BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012921
(1003 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867948.1| PREDICTED: similar to splicing factor, arginine... 140 1e-33
Alignment gi|XP_853826.1| PREDICTED: similar to splicing factor, arginine... 140 1e-33
Alignment gi|XP_867937.1| PREDICTED: similar to splicing factor, arginine... 106 4e-23
Alignment gi|XP_547337.2| PREDICTED: similar to splicing factor, arginine... 106 4e-23
Alignment gi|XP_544361.2| PREDICTED: similar to splicing factor, arginine... 49 6e-06
>ref|XP_867948.1| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 4 [Canis familiaris].
Length = 379
Score = 140 bits (354), Expect = 1e-33
Identities = 84/136 (61%), Positives = 86/136 (63%)
Frame = +2
Query: 440 YAEGVIPDETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXX 619
++ GVIPDETKALS QIGAV
Sbjct: 5 FSAGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAA 64
Query: 620 XXXXXXXXNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA 799
NSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA
Sbjct: 65 LGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA 124
Query: 800 QSLISAAIEPDKKEEK 847
QSLISAAIEPDKKEEK
Sbjct: 125 QSLISAAIEPDKKEEK 140
>ref|XP_853826.1| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 2 [Canis familiaris].
Length = 378
Score = 140 bits (354), Expect = 1e-33
Identities = 84/136 (61%), Positives = 86/136 (63%)
Frame = +2
Query: 440 YAEGVIPDETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXX 619
++ GVIPDETKALS QIGAV
Sbjct: 5 FSAGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAA 64
Query: 620 XXXXXXXXNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA 799
NSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA
Sbjct: 65 LGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA 124
Query: 800 QSLISAAIEPDKKEEK 847
QSLISAAIEPDKKEEK
Sbjct: 125 QSLISAAIEPDKKEEK 140
>ref|XP_867937.1| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 3 [Canis familiaris].
Length = 293
Score = 106 bits (264), Expect = 4e-23
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = +2
Query: 683 MSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 847
MSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK
Sbjct: 1 MSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 55
Animal-Genome cDNA 20110601C-012921
Animal-Genome cDNA 20110601C-012921
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012921
(1003 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069089.1| splicing factor, arginine/serine-rich 11 [Bo... 309 3e-84
Alignment gi|NP_001193066.1| splicing regulatory glutamine/lysine-rich pr... 137 1e-32
Alignment gi|XP_002696348.1| PREDICTED: splicing factor, arginine/serine-... 83 3e-16
>ref|NP_001069089.1| splicing factor, arginine/serine-rich 11 [Bos taurus].
Length = 482
Score = 309 bits (791), Expect = 3e-84
Identities = 174/244 (71%), Positives = 175/244 (71%)
Frame = +2
Query: 116 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 295
MSNTT+VPST TEVIQVTNVSPSASSEQMRTLFGFLGKIDE
Sbjct: 1 MSNTTIVPSTAGPGPSGGPGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 60
Query: 296 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 475
LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA
Sbjct: 61 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 120
Query: 476 LSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQS 655
LS QIGAV NSQS
Sbjct: 121 LSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQS 180
Query: 656 LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK 835
LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK
Sbjct: 181 LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK 240
Query: 836 KEEK 847
KEEK
Sbjct: 241 KEEK 244
>ref|NP_001193066.1| splicing regulatory glutamine/lysine-rich protein 1 [Bos taurus].
Length = 632
Score = 137 bits (345), Expect = 1e-32
Identities = 67/92 (72%), Positives = 79/92 (85%)
Frame = +2
Query: 206 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVV 385
T VIQVTN+S + +SEQMRTLF FLG+I+ELRL+PPD++PL SS+VC+VKF DP S V
Sbjct: 18 TAVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGV 77
Query: 386 AQHLTNTVFVDRALIVVPYAEGVIPDETKALS 481
AQHLTNTVF+DRALIVVP AEG IP+E KALS
Sbjct: 78 AQHLTNTVFIDRALIVVPCAEGKIPEEAKALS 109
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 701 KLNHVAAGLVSP-SLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
K+NH +V P + ++KE+EE MKRVREAQS ISAAIEP+
Sbjct: 252 KINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPE 296
>ref|XP_002696348.1| PREDICTED: splicing factor, arginine/serine-rich 12-like [Bos
taurus].
Length = 325
Score = 83.2 bits (204), Expect = 3e-16
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = +2
Query: 317 DSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALS 481
++PL SS+VC+VKF DP S VAQHLTNTVF+DRALIVVP AEG IP+qCP_Rel49_3>>ref|XP_547337.2| PREDICTED: similar to splicing factor, arginine/serine-rich 11
isoform 1 [Canis familiaris].
Length = 293
Score = 106 bits (264), Expect = 4e-23
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = +2
Query: 683 MSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 847
MSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK
Sbjct: 1 MSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEK 55
>ref|XP_544361.2| PREDICTED: similar to splicing factor, arginine/serine-rich 12
isoform 1 [Canis familiaris].
Length = 510
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 701 KLNHVAAGLVSP-SLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
K+NH +V P + ++KE+EE MKRVREAQS ISAAIEP+
Sbjct: 136 KINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPE 180
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,928,064
Number of extensions: 458041
Number of successful extensions: 1667
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1665
Number of HSP's successfully gapped: 5
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
E KALS
Sbjct: 7 NAPLAFSSKVCYVKFRDPSSVGVAQHLTNTVFIDRALIVVPCAEGKIPEEAKALS 61
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 701 KLNHVAAGLVSP-SLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
K+NH +V P + ++KE+EE MKRVREAQS ISAAIEP+
Sbjct: 204 KINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPE 248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,151,443
Number of extensions: 499403
Number of successful extensions: 1506
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1504
Number of HSP's successfully gapped: 5
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012921
(1003 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038052.1| serine/arginine-rich splicing factor 11 [Sus... 309 1e-84
Alignment gi|XP_003134051.2| PREDICTED: splicing regulatory glutamine/lys... 75 4e-14
>ref|NP_001038052.1| serine/arginine-rich splicing factor 11 [Sus scrofa].
Length = 483
Score = 309 bits (792), Expect = 1e-84
Identities = 175/244 (71%), Positives = 175/244 (71%)
Frame = +2
Query: 116 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 295
MSNTTVVPST TEVIQVTNVSPSASSEQMRTLFGFLGKIDE
Sbjct: 1 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 60
Query: 296 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 475
LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA
Sbjct: 61 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 120
Query: 476 LSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQS 655
LS QIGAV NSQS
Sbjct: 121 LSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQS 180
Query: 656 LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK 835
LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK
Sbjct: 181 LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK 240
Query: 836 KEEK 847
KEEK
Sbjct: 241 KEEK 244
>ref|XP_003134051.2| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Sus scrofa].
Length = 643
Score = 75.5 bits (184), Expect = 4e-14
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = +2
Query: 341 RVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALS 481
+VC+VKF DP S VAQHLTNTVF+DRALIVVP AEG IP+E KALS
Sbjct: 105 QVCYVKFRDPSSVGVAQHLTNTVFIDRALIVVPCAEGKIPEEAKALS 151
Score = 49.3 bits (116), Expect = 3e-06
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 701 KLNHVAAGLVSP-SLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
K+NH +V P + ++KE+EE MKRVREAQS ISAAIEP+
Sbjct: 294 KINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPE 338
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,989,232
Number of extensions: 389875
Number of successful extensions: 1100
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012921
(1003 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001087221.1| splicing factor, arginine/serine-rich 11 iso... 302 2e-82
Alignment gi|NP_001087222.1| splicing factor, arginine/serine-rich 11 iso... 299 2e-81
Alignment gi|NP_081265.1| splicing factor, arginine/serine-rich 11 isofor... 140 1e-33
Alignment gi|NP_766180.1| splicing regulatory glutamine/lysine-rich prote... 49 5e-06
>ref|NP_001087221.1| splicing factor, arginine/serine-rich 11 isoform 2 [Mus musculus].
Length = 511
Score = 302 bits (774), Expect = 2e-82
Identities = 174/248 (70%), Positives = 176/248 (70%)
Frame = +2
Query: 104 ASSAMSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVIQVTNVSPSASSEQMRTLFGFLG 283
A+ AMS+T VVPS TEVIQVTNVSPSASSEQMRTLFGFLG
Sbjct: 32 AARAMSSTAVVPSAPGPGPGPSGGPGGG------TEVIQVTNVSPSASSEQMRTLFGFLG 85
Query: 284 KIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPD 463
KIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPD
Sbjct: 86 KIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPD 145
Query: 464 ETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXX 643
ETKALS QIGAV
Sbjct: 146 ETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNL 205
Query: 644 NSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAI 823
NSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAI
Sbjct: 206 NSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAI 265
Query: 824 EPDKKEEK 847
EPDKKEEK
Sbjct: 266 EPDKKEEK 273
>ref|NP_001087222.1| splicing factor, arginine/serine-rich 11 isoform 1 [Mus musculus].
Length = 476
Score = 299 bits (766), Expect = 2e-81
Identities = 172/244 (70%), Positives = 173/244 (70%)
Frame = +2
Query: 116 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXXTEVIQVTNVSPSASSEQMRTLFGFLGKIDE 295
MS+T VVPS TEVIQVTNVSPSASSEQMRTLFGFLGKIDE
Sbjct: 1 MSSTAVVPSAPGPGPGPSGGPGGG------TEVIQVTNVSPSASSEQMRTLFGFLGKIDE 54
Query: 296 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 475
LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA
Sbjct: 55 LRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKA 114
Query: 476 LSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQS 655
LS QIGAV NSQS
Sbjct: 115 LSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQS 174
Query: 656 LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK 835
LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK
Sbjct: 175 LAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDK 234
Query: 836 KEEK 847
KEEK
Sbjct: 235 KEEK 238
>ref|NP_081265.1| splicing factor, arginine/serine-rich 11 isoform 3 [Mus musculus].
Length = 423
Score = 140 bits (354), Expect = 1e-33
Identities = 84/136 (61%), Positives = 86/136 (63%)
Frame = +2
Query: 440 YAEGVIPDETKALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXX 619
++ GVIPDETKALS QIGAV
Sbjct: 50 FSAGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAA 109
Query: 620 XXXXXXXXNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA 799
NSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA
Sbjct: 110 LGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREA 169
Query: 800 QSLISAAIEPDKKEEK 847
QSLISAAIEPDKKEEK
Sbjct: 170 QSLISAAIEPDKKEEK 185
>ref|NP_766180.1| splicing regulatory glutamine/lysine-rich protein 1 [Mus musculus].
Length = 494
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 701 KLNHVAAGLVSP-SLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
K+NH +V P + ++KE+EE MKRVREAQS ISAAIEP+
Sbjct: 139 KINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPE 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,021,884
Number of extensions: 394540
Number of successful extensions: 1356
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 4
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012921
(1003 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177916.1| serine/arginine-rich splicing factor 11 isof... 303 2e-82
Alignment gi|NP_004759.1| serine/arginine-rich splicing factor 11 isoform... 303 2e-82
Alignment gi|NP_001070667.1| splicing regulatory glutamine/lysine-rich pr... 138 9e-33
Alignment gi|NP_631907.1| splicing regulatory glutamine/lysine-rich prote... 49 6e-06
>ref|NP_001177916.1| serine/arginine-rich splicing factor 11 isoform 2 [Homo sapiens].
Length = 483
Score = 303 bits (775), Expect = 2e-82
Identities = 174/245 (71%), Positives = 174/245 (71%), Gaps = 1/245 (0%)
Frame = +2
Query: 116 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXX-TEVIQVTNVSPSASSEQMRTLFGFLGKID 292
MSNTTVVPST TEVIQVTNVSPSASSEQMRTLFGFLGKID
Sbjct: 1 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID 60
Query: 293 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETK 472
ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDE K
Sbjct: 61 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK 120
Query: 473 ALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQ 652
ALS QIGAV NSQ
Sbjct: 121 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ 180
Query: 653 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD
Sbjct: 181 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 240
Query: 833 KKEEK 847
KKEEK
Sbjct: 241 KKEEK 245
>ref|NP_004759.1| serine/arginine-rich splicing factor 11 isoform 1 [Homo sapiens].
Length = 484
Score = 303 bits (775), Expect = 2e-82
Identities = 174/245 (71%), Positives = 174/245 (71%), Gaps = 1/245 (0%)
Frame = +2
Query: 116 MSNTTVVPSTXXXXXXXXXXXXXXXXXXXX-TEVIQVTNVSPSASSEQMRTLFGFLGKID 292
MSNTTVVPST TEVIQVTNVSPSASSEQMRTLFGFLGKID
Sbjct: 1 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID 60
Query: 293 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETK 472
ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDE K
Sbjct: 61 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK 120
Query: 473 ALSXXXXXXXXXXXXXXXXXXXXXXXXXQIGAVXXXXXXXXXXXXXXXXXXXXXXXXNSQ 652
ALS QIGAV NSQ
Sbjct: 121 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ 180
Query: 653 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD
Sbjct: 181 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 240
Query: 833 KKEEK 847
KKEEK
Sbjct: 241 KKEEK 245
>ref|NP_001070667.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a [Homo
sapiens].
Length = 624
Score = 138 bits (347), Expect = 9e-33
Identities = 67/92 (72%), Positives = 80/92 (86%)
Frame = +2
Query: 206 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVV 385
T VIQVTN+S + +SEQMRTLF FLG+I+ELRL+PPD++PL SS+VC+VKF DP S V
Sbjct: 18 TSVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGV 77
Query: 386 AQHLTNTVFVDRALIVVPYAEGVIPDETKALS 481
AQHLTNTVF+DRALIVVP AEG IP+E+KALS
Sbjct: 78 AQHLTNTVFIDRALIVVPCAEGKIPEESKALS 109
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 701 KLNHVAAGLVSP-SLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
K+NH +V P + ++KE+EE MKRVREAQS ISAAIEP+
Sbjct: 252 KINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPE 296
>ref|NP_631907.1| splicing regulatory glutamine/lysine-rich protein 1 isoform b [Homo
sapiens].
Length = 508
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 701 KLNHVAAGLVSP-SLKSDTSSKEIEEAMKRVREAQSLISAAIEPD 832
K+NH +V P + ++KE+EE MKRVREAQS ISAAIEP+
Sbjct: 136 KINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPE 180
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,506,644
Number of extensions: 451354
Number of successful extensions: 1495
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1489
Number of HSP's successfully gapped: 5
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012921
(1003 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 268 5e-69
>Sscrofa_Chr06
|| Length = 157765593
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 316 tgattcgcctttgccagtctcatcccgtgtctgctttgttaagttccatgatccagactc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132217626 tgattcgcctttgccagtctcatcccgtgtctgctttgttaagttccatgatccagactc 132217567
Query: 376 agcagttgtggcacagcatctgacaaacactgtattcgttgacagagctttgatagtcgt 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132217566 agcagttgtggcacagcatctgacaaacactgtattcgttgacagagctttgatagtcgt 132217507
Query: 436 accatatgcagaagg 450
|||||||||||||||
Sbjct: 132217506 accatatgcagaagg 132217492
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 703 gttgaatcatgtagctgctggtcttgtttcaccaagtctgaaatcagatacctctagtaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132209481 gttgaatcatgtagctgctggtcttgtttcaccaagtctgaaatcagatacctctagtaa 132209422
Query: 763 agaaatagaggaagccatgaagagagtacgagaagcacagtccttaatttctgctgctat 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132209421 agaaatagaggaagccatgaagagagtacgagaagcacagtccttaatttctgctgctat 132209362
Query: 823 agaaccag 830
||||||||
Sbjct: 132209361 agaaccag 132209354
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 448 aggagttattcctgatgagactaaggctttgtctctgttggcaccagctaatgcagtggc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132213695 aggagttattcctgatgagactaaggctttgtctctgttggcaccagctaatgcagtggc 132213636
Query: 508 aggtcttctgcctggtggtggactcctgcctacccctaacccacttacccag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132213635 aggtcttctgcctggtggtggactcctgcctacccctaacccacttacccag 132213584
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 206 accgaggtaatccaggtgactaatgtctccccgagcgctagctctgagcagatgcggacc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223658 accgaggtaatccaggtgactaatgtctccccgagcgctagctctgagcagatgcggacc 132223599
Query: 266 ctcttcggtttcctaggcaagatcgacgaactgcgcctcttcccgcctga 315
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223598 ctcttcggtttcctaggcaagatcgacgaactgcgcctcttcccgcctga 132223549
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 557 cagatcggcgctgttccactggctgctttgggagctcctactcttgatcctgcccttgct 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132211759 cagatcggcgctgttccactggctgctttgggagctcctactcttgatcctgcccttgct 132211700
Query: 617 gcacttgggcttcctggagcaaacttgaattctcag 652
||||||||||||||||||||||||||||||||||||
Sbjct: 132211699 gcacttgggcttcctggagcaaacttgaattctcag 132211664
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 2 gatgtcgtcatcgcgagcgcctgaggcaggaggacagaggagcccttcccgttgccggtg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132240405 gatgtcgtcatcgcgagcgcctgaggcaggaggacagaggagcccttcccgttgccggtg 132240346
Query: 62 ccggccttgtgtcttggaattactttgctcaag 94
|||||||||||||||||||||||||||||||||
Sbjct: 132240345 ccggccttgtgtcttggaattactttgctcaag 132240313
Score = 178 bits (90), Expect = 4e-42
Identities = 92/93 (98%)
Strand = Plus / Minus
Query: 911 aggcgatcaagaagcagatcaagaaggcgatcacactctaagtcaaggagtangcgacga 970
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 132201650 aggcgatcaagaagcagatcaagaaggcgatcacactctaagtcaaggagtaggcgacga 132201591
Query: 971 tccaaaagtccaagacggagaagatctcattcc 1003
|||||||||||||||||||||||||||||||||
Sbjct: 132201590 tccaaaagtccaagacggagaagatctcattcc 132201558
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 827 ccagataagaaagaagaaaaacgaaggcactcaaggtcaagatcacgttctaggaggagg 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132207125 ccagataagaaagaagaaaaacgaaggcactcaaggtcaagatcacgttctaggaggagg 132207066
Query: 887 aggacgccctcatcttctaggcacagg 913
|||||||||||||||||||||||||||
Sbjct: 132207065 aggacgccctcatcttctaggcacagg 132207039
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 651 agtctcttgctgcagaccagttgctgaagcttatgagtactgttgatcccaagt 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132210902 agtctcttgctgcagaccagttgctgaagcttatgagtactgttgatcccaagt 132210849
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 94 gagcgagaacgcgagcagcgccatgagcaacactaccgtcgtccccagcact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132223770 gagcgagaacgcgagcagcgccatgagcaacactaccgtcgtccccagcact 132223719
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,497,897
Number of extensions: 142
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 10
Length of query: 1003
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 982
Effective length of database: 2,808,413,156
Effective search space: 2757861719192
Effective search space used: 2757861719192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)