Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012928
(889 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538011.2| PREDICTED: similar to regucalcin [Canis familia... 463 e-135
>ref|XP_538011.2| PREDICTED: similar to regucalcin [Canis familiaris].
Length = 343
Score = 463 bits (1192), Expect(2) = e-135
Identities = 220/246 (89%), Positives = 234/246 (95%)
Frame = +3
Query: 105 RSPPMTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTL 284
+S P+TMSSIKIECVLRENC CGESPVWEEA+NSLLFVDIPAKKVCRW++LSK VQ VT+
Sbjct: 39 KSTPLTMSSIKIECVLRENCRCGESPVWEEAANSLLFVDIPAKKVCRWDSLSKSVQHVTV 98
Query: 285 DAPVSSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYF 464
DAP+SSVALRQ GYVAT+GTKFCALNWED+SAV LA VDKDKKNNRFNDGKVDPAGRYF
Sbjct: 99 DAPISSVALRQGRGYVATIGTKFCALNWEDQSAVALATVDKDKKNNRFNDGKVDPAGRYF 158
Query: 465 AGTMAEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYS 644
AGTMAEETAPAVLERHQGSLY+LF D HVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYS
Sbjct: 159 AGTMAEETAPAVLERHQGSLYSLFPDGHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYS 218
Query: 645 VDAFDYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKK 824
VDAFDYDLQTGKISNRRS+YK+EKEE IPDGMCIDTEGKLWVACYNG RVIRLDPETGK+
Sbjct: 219 VDAFDYDLQTGKISNRRSVYKLEKEEQIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKR 278
Query: 825 LQTVKV 842
LQTVK+
Sbjct: 279 LQTVKL 284
Score = 38.1 bits (87), Expect(2) = e-135
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG KDY
Sbjct: 283 KLPVDKTTSCCFGGKDY 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,246,662
Number of extensions: 1203158
Number of successful extensions: 3742
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3736
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 194
Effective length of database: 15,474,232
Effective search space: 3002001008
Effective search space used: 3002001008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012928
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012928
(889 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776382.1| regucalcin [Bos taurus]. 466 e-136
>ref|NP_776382.1| regucalcin [Bos taurus].
Length = 299
Score = 466 bits (1200), Expect(2) = e-136
Identities = 222/240 (92%), Positives = 234/240 (97%)
Frame = +3
Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRW++LSKQVQRVT+DAPVSS
Sbjct: 1 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWDSLSKQVQRVTVDAPVSS 60
Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
VALRQ+GGYVATVGTKFCALNWED+SAVVLA VDK+KKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61 VALRQSGGYVATVGTKFCALNWEDQSAVVLATVDKEKKNNRFNDGKVDPAGRYFAGTMAE 120
Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
ETAPAVLER QGSLY+LF DHHVEKYFDQVDISNGLDWS+DHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERRQGSLYSLFPDHHVEKYFDQVDISNGLDWSMDHKIFYYIDSLSYSVDAFDY 180
Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
DLQTGKISNRRS+YK+EKEE IPDGMCID EGKLWVACYNG RVIRLDPETGK+LQTVK+
Sbjct: 181 DLQTGKISNRRSVYKLEKEEQIPDGMCIDVEGKLWVACYNGGRVIRLDPETGKRLQTVKL 240
Score = 38.1 bits (87), Expect(2) = e-136
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG KDY
Sbjct: 239 KLPVDKTTSCCFGGKDY 255
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,526,676
Number of extensions: 1168112
Number of successful extensions: 3853
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3853
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,306,398
Effective search space: 2775441212
Effective search space used: 2775441212
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012928
(889 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135107.2| PREDICTED: regucalcin-like isoform 1 [Sus sc... 493 e-144
Alignment gi|XP_003360333.1| PREDICTED: regucalcin-like isoform 2 [Sus sc... 493 e-144
Alignment gi|NP_001070688.1| regucalcin [Sus scrofa]. 487 e-142
>ref|XP_003135107.2| PREDICTED: regucalcin-like isoform 1 [Sus scrofa].
Length = 301
Score = 493 bits (1270), Expect(2) = e-144
Identities = 239/242 (98%), Positives = 241/242 (99%)
Frame = +3
Query: 117 MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 296
MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV
Sbjct: 1 MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 60
Query: 297 SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 476
SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM
Sbjct: 61 SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 120
Query: 477 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 656
AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF
Sbjct: 121 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 180
Query: 657 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTV 836
DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNG RVIRLDPETGK+LQTV
Sbjct: 181 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKRLQTV 240
Query: 837 KV 842
K+
Sbjct: 241 KL 242
Score = 38.1 bits (87), Expect(2) = e-144
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG KDY
Sbjct: 241 KLPVDKTTSCCFGGKDY 257
>ref|XP_003360333.1| PREDICTED: regucalcin-like isoform 2 [Sus scrofa].
Length = 301
Score = 493 bits (1270), Expect(2) = e-144
Identities = 239/242 (98%), Positives = 241/242 (99%)
Frame = +3
Query: 117 MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 296
MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV
Sbjct: 1 MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 60
Query: 297 SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 476
SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM
Sbjct: 61 SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 120
Query: 477 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 656
AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF
Sbjct: 121 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 180
Query: 657 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTV 836
DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNG RVIRLDPETGK+LQTV
Sbjct: 181 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKRLQTV 240
Query: 837 KV 842
K+
Sbjct: 241 KL 242
Score = 38.1 bits (87), Expect(2) = e-144
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG KDY
Sbjct: 241 KLPVDKTTSCCFGGKDY 257
>ref|NP_001070688.1| regucalcin [Sus scrofa].
Length = 299
Score = 487 bits (1253), Expect(2) = e-142
Identities = 236/240 (98%), Positives = 238/240 (99%)
Frame = +3
Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
MSSIKIECVLRENCHCGESPVW EASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS
Sbjct: 1 MSSIKIECVLRENCHCGESPVWGEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 60
Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 120
Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 180
Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNG RVIRLDPETGK+LQTVK+
Sbjct: 181 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKRLQTVKL 240
Score = 38.1 bits (87), Expect(2) = e-142
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG KDY
Sbjct: 239 KLPVDKTTSCCFGGKDY 255
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,478,252
Number of extensions: 750106
Number of successful extensions: 2435
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2432
Number of HSP's successfully gapped: 6
Length of query: 296
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,904,026
Effective search space: 1762997148
Effective search space used: 1762997148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012928
(889 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033086.1| regucalcin [Mus musculus]. 433 e-126
>ref|NP_033086.1| regucalcin [Mus musculus].
Length = 299
Score = 433 bits (1114), Expect(2) = e-126
Identities = 205/240 (85%), Positives = 223/240 (92%)
Frame = +3
Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
MSSIK+ECVLREN CGESPVWEEAS SLLFVDIP+K +CRW+ +S QVQRV +DAPVSS
Sbjct: 1 MSSIKVECVLRENYRCGESPVWEEASQSLLFVDIPSKIICRWDTVSNQVQRVAVDAPVSS 60
Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
VALRQ GGYVAT+GTKFCALNWE++S VLA VD+DKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61 VALRQLGGYVATIGTKFCALNWENQSVFVLAMVDEDKKNNRFNDGKVDPAGRYFAGTMAE 120
Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
ETAPAVLERHQGSLY+LF DH V+KYFDQVDISNGLDWSLDHKIFYYIDSLSY+VDAFDY
Sbjct: 121 ETAPAVLERHQGSLYSLFPDHSVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYTVDAFDY 180
Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
DLQTG+ISNRR +YKMEK+E IPDGMCID EGKLWVACYNG RVIRLDPETGK+LQTVK+
Sbjct: 181 DLQTGQISNRRIVYKMEKDEQIPDGMCIDAEGKLWVACYNGGRVIRLDPETGKRLQTVKL 240
Score = 38.1 bits (87), Expect(2) = e-126
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG KDY
Sbjct: 239 KLPVDKTTSCCFGGKDY 255
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,407,255
Number of extensions: 1001648
Number of successful extensions: 3559
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3557
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 195
Effective length of database: 12,583,923
Effective search space: 2453864985
Effective search space used: 2453864985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012928
(889 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_690608.1| regucalcin [Homo sapiens]. 450 e-131
Alignment gi|NP_004674.1| regucalcin [Homo sapiens]. 450 e-131
>ref|NP_690608.1| regucalcin [Homo sapiens].
Length = 299
Score = 450 bits (1157), Expect(2) = e-131
Identities = 212/240 (88%), Positives = 229/240 (95%)
Frame = +3
Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
MSSIKIECVL ENC CGESPVWEE SNSLLFVDIPAKKVCRW++ +KQVQRVT+DAPVSS
Sbjct: 1 MSSIKIECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSS 60
Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
VALRQ+GGYVAT+GTKFCALNW+++SAVVLA VD DKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61 VALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAE 120
Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
ETAPAVLERHQG+LY+LF DHHV+KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 180
Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
DLQTG+ISNRRS+YK+EKEE IPDGMCID EGKLWVACYNG RVIRLDP TGK+LQTVK+
Sbjct: 181 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 240
Score = 36.2 bits (82), Expect(2) = e-131
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG K+Y
Sbjct: 239 KLPVDKTTSCCFGGKNY 255
>ref|NP_004674.1| regucalcin [Homo sapiens].
Length = 299
Score = 450 bits (1157), Expect(2) = e-131
Identities = 212/240 (88%), Positives = 229/240 (95%)
Frame = +3
Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
MSSIKIECVL ENC CGESPVWEE SNSLLFVDIPAKKVCRW++ +KQVQRVT+DAPVSS
Sbjct: 1 MSSIKIECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSS 60
Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
VALRQ+GGYVAT+GTKFCALNW+++SAVVLA VD DKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61 VALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAE 120
Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
ETAPAVLERHQG+LY+LF DHHV+KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 180
Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
DLQTG+ISNRRS+YK+EKEE IPDGMCID EGKLWVACYNG RVIRLDP TGK+LQTVK+
Sbjct: 181 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 240
Score = 36.2 bits (82), Expect(2) = e-131
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 838 KLPVEKTTSCCFGRKDY 888
KLPV+KTTSCCFG K+Y
Sbjct: 239 KLPVDKTTSCCFGGKNY 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,543,840
Number of extensions: 1193167
Number of successful extensions: 4108
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 4
Length of query: 296
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,934,836
Effective search space: 2897358184
Effective search space used: 2897358184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012928
(889 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 422 e-115
>Sscrofa_ChrX
|| Length = 144288218
Score = 422 bits (213), Expect = e-115
Identities = 216/217 (99%)
Strand = Plus / Plus
Query: 468 ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaggggtccctgtac 527
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 46576928 ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaagggtccctgtac 46576987
Query: 528 gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46576988 gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 46577047
Query: 588 ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46577048 ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 46577107
Query: 648 gatgcctttgactatgacctgcagacaggaaagattt 684
|||||||||||||||||||||||||||||||||||||
Sbjct: 46577108 gatgcctttgactatgacctgcagacaggaaagattt 46577144
Score = 422 bits (213), Expect = e-115
Identities = 216/217 (99%)
Strand = Plus / Minus
Query: 468 ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaggggtccctgtac 527
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 46912382 ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaagggtccctgtac 46912323
Query: 528 gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46912322 gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 46912263
Query: 588 ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46912262 ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 46912203
Query: 648 gatgcctttgactatgacctgcagacaggaaagattt 684
|||||||||||||||||||||||||||||||||||||
Sbjct: 46912202 gatgcctttgactatgacctgcagacaggaaagattt 46912166
Score = 367 bits (185), Expect = 7e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 285 gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46568837 gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 46568896
Query: 345 acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46568897 acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 46568956
Query: 405 aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46568957 aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 46569016
Query: 465 gctgg 469
|||||
Sbjct: 46569017 gctgg 46569021
Score = 367 bits (185), Expect = 7e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 285 gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920471 gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 46920412
Query: 345 acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920411 acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 46920352
Query: 405 aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920351 aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 46920292
Query: 465 gctgg 469
|||||
Sbjct: 46920291 gctgg 46920287
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 103 gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565868 gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 46565927
Query: 163 gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565928 gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 46565987
Query: 223 ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565988 ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 46566047
Query: 283 tgg 285
|||
Sbjct: 46566048 tgg 46566050
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 103 gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923441 gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 46923382
Query: 163 gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923381 gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 46923322
Query: 223 ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923321 ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 46923262
Query: 283 tgg 285
|||
Sbjct: 46923261 tgg 46923259
Score = 248 bits (125), Expect = 4e-63
Identities = 131/133 (98%)
Strand = Plus / Plus
Query: 685 ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46583782 ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 46583841
Query: 745 ttgatactgaggggaagctctgggtggcctgttacaatggaagaagagtgatccgcctgg 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 46583842 ttgatactgaggggaagctctgggtggcctgttacaatggaggaagagtgatccgcctgg 46583901
Query: 805 atcctgaaacagg 817
||||||| |||||
Sbjct: 46583902 atcctgagacagg 46583914
Score = 248 bits (125), Expect = 4e-63
Identities = 131/133 (98%)
Strand = Plus / Minus
Query: 685 ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46905438 ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 46905379
Query: 745 ttgatactgaggggaagctctgggtggcctgttacaatggaagaagagtgatccgcctgg 804
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 46905378 ttgatactgaggggaagctctgggtggcctgttacaatggaggaagagtgatccgcctgg 46905319
Query: 805 atcctgaaacagg 817
||||||| |||||
Sbjct: 46905318 atcctgagacagg 46905306
Score = 155 bits (78), Expect = 5e-35
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 1 cagtcagctttccctnnnnnnntcactagcaccaaggtgtggctgttggggtgttgcttt 60
||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 46565000 cagtcagctttccctgggggggtcactagcgccaaggtgtggctgttggggtgttgcttt 46565059
Query: 61 tctgcggctctcttttttaaagattgcttaacaaacagcactg 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565060 tctgcggctctcttttttaaagattgcttaacaaacagcactg 46565102
Score = 155 bits (78), Expect = 5e-35
Identities = 95/103 (92%)
Strand = Plus / Minus
Query: 1 cagtcagctttccctnnnnnnntcactagcaccaaggtgtggctgttggggtgttgcttt 60
||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 46924309 cagtcagctttccctgggggggtcactagcgccaaggtgtggctgttggggtgttgcttt 46924250
Query: 61 tctgcggctctcttttttaaagattgcttaacaaacagcactg 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46924249 tctgcggctctcttttttaaagattgcttaacaaacagcactg 46924207
Score = 89.7 bits (45), Expect = 2e-15
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 825 ctccaaaccgtgaaagttgcctgttgaaaaaacaacctcctgctgctttggaaggaagga 884
|||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 46584593 ctccaaaccgtgaa-gttgcctgttgataaaacaacctcatgctgctttggagggaagga 46584651
Query: 885 ttact 889
|||||
Sbjct: 46584652 ttact 46584656
Score = 89.7 bits (45), Expect = 2e-15
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 825 ctccaaaccgtgaaagttgcctgttgaaaaaacaacctcctgctgctttggaaggaagga 884
|||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 46904627 ctccaaaccgtgaa-gttgcctgttgataaaacaacctcatgctgctttggagggaagga 46904569
Query: 885 ttact 889
|||||
Sbjct: 46904568 ttact 46904564
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,110,635
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 12
Length of query: 889
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 868
Effective length of database: 2,808,413,156
Effective search space: 2437702619408
Effective search space used: 2437702619408
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)