Animal-Genome cDNA 20110601C-012928


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012928
         (889 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538011.2| PREDICTED: similar to regucalcin [Canis familia...   463   e-135

>ref|XP_538011.2| PREDICTED: similar to regucalcin [Canis familiaris].
          Length = 343

 Score =  463 bits (1192), Expect(2) = e-135
 Identities = 220/246 (89%), Positives = 234/246 (95%)
 Frame = +3

Query: 105 RSPPMTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTL 284
           +S P+TMSSIKIECVLRENC CGESPVWEEA+NSLLFVDIPAKKVCRW++LSK VQ VT+
Sbjct: 39  KSTPLTMSSIKIECVLRENCRCGESPVWEEAANSLLFVDIPAKKVCRWDSLSKSVQHVTV 98

Query: 285 DAPVSSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYF 464
           DAP+SSVALRQ  GYVAT+GTKFCALNWED+SAV LA VDKDKKNNRFNDGKVDPAGRYF
Sbjct: 99  DAPISSVALRQGRGYVATIGTKFCALNWEDQSAVALATVDKDKKNNRFNDGKVDPAGRYF 158

Query: 465 AGTMAEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYS 644
           AGTMAEETAPAVLERHQGSLY+LF D HVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYS
Sbjct: 159 AGTMAEETAPAVLERHQGSLYSLFPDGHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYS 218

Query: 645 VDAFDYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKK 824
           VDAFDYDLQTGKISNRRS+YK+EKEE IPDGMCIDTEGKLWVACYNG RVIRLDPETGK+
Sbjct: 219 VDAFDYDLQTGKISNRRSVYKLEKEEQIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKR 278

Query: 825 LQTVKV 842
           LQTVK+
Sbjct: 279 LQTVKL 284



 Score = 38.1 bits (87), Expect(2) = e-135
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG KDY
Sbjct: 283 KLPVDKTTSCCFGGKDY 299


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,246,662
Number of extensions: 1203158
Number of successful extensions: 3742
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3736
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 194
Effective length of database: 15,474,232
Effective search space: 3002001008
Effective search space used: 3002001008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012928

Animal-Genome cDNA 20110601C-012928


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012928
         (889 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776382.1| regucalcin [Bos taurus].                             466   e-136

>ref|NP_776382.1| regucalcin [Bos taurus].
          Length = 299

 Score =  466 bits (1200), Expect(2) = e-136
 Identities = 222/240 (92%), Positives = 234/240 (97%)
 Frame = +3

Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
           MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRW++LSKQVQRVT+DAPVSS
Sbjct: 1   MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWDSLSKQVQRVTVDAPVSS 60

Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
           VALRQ+GGYVATVGTKFCALNWED+SAVVLA VDK+KKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61  VALRQSGGYVATVGTKFCALNWEDQSAVVLATVDKEKKNNRFNDGKVDPAGRYFAGTMAE 120

Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
           ETAPAVLER QGSLY+LF DHHVEKYFDQVDISNGLDWS+DHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERRQGSLYSLFPDHHVEKYFDQVDISNGLDWSMDHKIFYYIDSLSYSVDAFDY 180

Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
           DLQTGKISNRRS+YK+EKEE IPDGMCID EGKLWVACYNG RVIRLDPETGK+LQTVK+
Sbjct: 181 DLQTGKISNRRSVYKLEKEEQIPDGMCIDVEGKLWVACYNGGRVIRLDPETGKRLQTVKL 240



 Score = 38.1 bits (87), Expect(2) = e-136
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG KDY
Sbjct: 239 KLPVDKTTSCCFGGKDY 255


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,526,676
Number of extensions: 1168112
Number of successful extensions: 3853
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3853
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,306,398
Effective search space: 2775441212
Effective search space used: 2775441212
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012928
         (889 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003135107.2| PREDICTED: regucalcin-like isoform 1 [Sus sc...   493   e-144
Alignment   gi|XP_003360333.1| PREDICTED: regucalcin-like isoform 2 [Sus sc...   493   e-144
Alignment   gi|NP_001070688.1| regucalcin [Sus scrofa].                          487   e-142

>ref|XP_003135107.2| PREDICTED: regucalcin-like isoform 1 [Sus scrofa].
          Length = 301

 Score =  493 bits (1270), Expect(2) = e-144
 Identities = 239/242 (98%), Positives = 241/242 (99%)
 Frame = +3

Query: 117 MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 296
           MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV
Sbjct: 1   MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 60

Query: 297 SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 476
           SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM
Sbjct: 61  SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 120

Query: 477 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 656
           AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF
Sbjct: 121 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 180

Query: 657 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTV 836
           DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNG RVIRLDPETGK+LQTV
Sbjct: 181 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKRLQTV 240

Query: 837 KV 842
           K+
Sbjct: 241 KL 242



 Score = 38.1 bits (87), Expect(2) = e-144
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG KDY
Sbjct: 241 KLPVDKTTSCCFGGKDY 257


>ref|XP_003360333.1| PREDICTED: regucalcin-like isoform 2 [Sus scrofa].
          Length = 301

 Score =  493 bits (1270), Expect(2) = e-144
 Identities = 239/242 (98%), Positives = 241/242 (99%)
 Frame = +3

Query: 117 MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 296
           MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV
Sbjct: 1   MTMSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPV 60

Query: 297 SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 476
           SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM
Sbjct: 61  SSVALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTM 120

Query: 477 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 656
           AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF
Sbjct: 121 AEETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAF 180

Query: 657 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTV 836
           DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNG RVIRLDPETGK+LQTV
Sbjct: 181 DYDLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKRLQTV 240

Query: 837 KV 842
           K+
Sbjct: 241 KL 242



 Score = 38.1 bits (87), Expect(2) = e-144
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG KDY
Sbjct: 241 KLPVDKTTSCCFGGKDY 257


>ref|NP_001070688.1| regucalcin [Sus scrofa].
          Length = 299

 Score =  487 bits (1253), Expect(2) = e-142
 Identities = 236/240 (98%), Positives = 238/240 (99%)
 Frame = +3

Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
           MSSIKIECVLRENCHCGESPVW EASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS
Sbjct: 1   MSSIKIECVLRENCHCGESPVWGEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 60

Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
           VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61  VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 120

Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
           ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 180

Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
           DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNG RVIRLDPETGK+LQTVK+
Sbjct: 181 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGGRVIRLDPETGKRLQTVKL 240



 Score = 38.1 bits (87), Expect(2) = e-142
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG KDY
Sbjct: 239 KLPVDKTTSCCFGGKDY 255


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,478,252
Number of extensions: 750106
Number of successful extensions: 2435
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2432
Number of HSP's successfully gapped: 6
Length of query: 296
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,904,026
Effective search space: 1762997148
Effective search space used: 1762997148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012928
         (889 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033086.1| regucalcin [Mus musculus].                           433   e-126

>ref|NP_033086.1| regucalcin [Mus musculus].
          Length = 299

 Score =  433 bits (1114), Expect(2) = e-126
 Identities = 205/240 (85%), Positives = 223/240 (92%)
 Frame = +3

Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
           MSSIK+ECVLREN  CGESPVWEEAS SLLFVDIP+K +CRW+ +S QVQRV +DAPVSS
Sbjct: 1   MSSIKVECVLRENYRCGESPVWEEASQSLLFVDIPSKIICRWDTVSNQVQRVAVDAPVSS 60

Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
           VALRQ GGYVAT+GTKFCALNWE++S  VLA VD+DKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61  VALRQLGGYVATIGTKFCALNWENQSVFVLAMVDEDKKNNRFNDGKVDPAGRYFAGTMAE 120

Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
           ETAPAVLERHQGSLY+LF DH V+KYFDQVDISNGLDWSLDHKIFYYIDSLSY+VDAFDY
Sbjct: 121 ETAPAVLERHQGSLYSLFPDHSVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYTVDAFDY 180

Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
           DLQTG+ISNRR +YKMEK+E IPDGMCID EGKLWVACYNG RVIRLDPETGK+LQTVK+
Sbjct: 181 DLQTGQISNRRIVYKMEKDEQIPDGMCIDAEGKLWVACYNGGRVIRLDPETGKRLQTVKL 240



 Score = 38.1 bits (87), Expect(2) = e-126
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG KDY
Sbjct: 239 KLPVDKTTSCCFGGKDY 255


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,407,255
Number of extensions: 1001648
Number of successful extensions: 3559
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3557
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 195
Effective length of database: 12,583,923
Effective search space: 2453864985
Effective search space used: 2453864985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012928
         (889 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_690608.1| regucalcin [Homo sapiens].                           450   e-131
Alignment   gi|NP_004674.1| regucalcin [Homo sapiens].                           450   e-131

>ref|NP_690608.1| regucalcin [Homo sapiens].
          Length = 299

 Score =  450 bits (1157), Expect(2) = e-131
 Identities = 212/240 (88%), Positives = 229/240 (95%)
 Frame = +3

Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
           MSSIKIECVL ENC CGESPVWEE SNSLLFVDIPAKKVCRW++ +KQVQRVT+DAPVSS
Sbjct: 1   MSSIKIECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSS 60

Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
           VALRQ+GGYVAT+GTKFCALNW+++SAVVLA VD DKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61  VALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAE 120

Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
           ETAPAVLERHQG+LY+LF DHHV+KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 180

Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
           DLQTG+ISNRRS+YK+EKEE IPDGMCID EGKLWVACYNG RVIRLDP TGK+LQTVK+
Sbjct: 181 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 240



 Score = 36.2 bits (82), Expect(2) = e-131
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG K+Y
Sbjct: 239 KLPVDKTTSCCFGGKNY 255


>ref|NP_004674.1| regucalcin [Homo sapiens].
          Length = 299

 Score =  450 bits (1157), Expect(2) = e-131
 Identities = 212/240 (88%), Positives = 229/240 (95%)
 Frame = +3

Query: 123 MSSIKIECVLRENCHCGESPVWEEASNSLLFVDIPAKKVCRWNALSKQVQRVTLDAPVSS 302
           MSSIKIECVL ENC CGESPVWEE SNSLLFVDIPAKKVCRW++ +KQVQRVT+DAPVSS
Sbjct: 1   MSSIKIECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSS 60

Query: 303 VALRQAGGYVATVGTKFCALNWEDESAVVLAAVDKDKKNNRFNDGKVDPAGRYFAGTMAE 482
           VALRQ+GGYVAT+GTKFCALNW+++SAVVLA VD DKKNNRFNDGKVDPAGRYFAGTMAE
Sbjct: 61  VALRQSGGYVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAE 120

Query: 483 ETAPAVLERHQGSLYALFADHHVEKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 662
           ETAPAVLERHQG+LY+LF DHHV+KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY
Sbjct: 121 ETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 180

Query: 663 DLQTGKISNRRSIYKMEKEEHIPDGMCIDTEGKLWVACYNGRRVIRLDPETGKKLQTVKV 842
           DLQTG+ISNRRS+YK+EKEE IPDGMCID EGKLWVACYNG RVIRLDP TGK+LQTVK+
Sbjct: 181 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 240



 Score = 36.2 bits (82), Expect(2) = e-131
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +1

Query: 838 KLPVEKTTSCCFGRKDY 888
           KLPV+KTTSCCFG K+Y
Sbjct: 239 KLPVDKTTSCCFGGKNY 255


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,543,840
Number of extensions: 1193167
Number of successful extensions: 4108
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 4
Length of query: 296
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,934,836
Effective search space: 2897358184
Effective search space used: 2897358184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012928
         (889 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                          422   e-115

>Sscrofa_ChrX 
||          Length = 144288218

 Score =  422 bits (213), Expect = e-115
 Identities = 216/217 (99%)
 Strand = Plus / Plus

                                                                            
Query: 468      ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaggggtccctgtac 527
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 46576928 ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaagggtccctgtac 46576987

                                                                            
Query: 528      gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 587
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46576988 gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 46577047

                                                                            
Query: 588      ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 647
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46577048 ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 46577107

                                                     
Query: 648      gatgcctttgactatgacctgcagacaggaaagattt 684
                |||||||||||||||||||||||||||||||||||||
Sbjct: 46577108 gatgcctttgactatgacctgcagacaggaaagattt 46577144



 Score =  422 bits (213), Expect = e-115
 Identities = 216/217 (99%)
 Strand = Plus / Minus

                                                                            
Query: 468      ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaggggtccctgtac 527
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 46912382 ggaaccatggctgaggaaacagcgccggcggttctggaacggcaccaagggtccctgtac 46912323

                                                                            
Query: 528      gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 587
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46912322 gccctctttgccgaccaccacgtggaaaagtactttgatcaggtggacatctccaatggt 46912263

                                                                            
Query: 588      ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 647
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46912262 ttggattggtctctggaccacaaaatcttctattacatcgatagcctgtcctactccgtg 46912203

                                                     
Query: 648      gatgcctttgactatgacctgcagacaggaaagattt 684
                |||||||||||||||||||||||||||||||||||||
Sbjct: 46912202 gatgcctttgactatgacctgcagacaggaaagattt 46912166



 Score =  367 bits (185), Expect = 7e-99
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                            
Query: 285      gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 344
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46568837 gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 46568896

                                                                            
Query: 345      acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 404
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46568897 acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 46568956

                                                                            
Query: 405      aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 464
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46568957 aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 46569016

                     
Query: 465      gctgg 469
                |||||
Sbjct: 46569017 gctgg 46569021



 Score =  367 bits (185), Expect = 7e-99
 Identities = 185/185 (100%)
 Strand = Plus / Minus

                                                                            
Query: 285      gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 344
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920471 gatgctcctgtcagctctgtggcccttcgccaggcaggaggctatgtcgccacagttgga 46920412

                                                                            
Query: 345      acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 404
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920411 acaaagttctgtgctttgaactgggaagatgagtcagcagttgtcttggccgctgtcgat 46920352

                                                                            
Query: 405      aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 464
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46920351 aaagacaagaaaaacaatcgattcaatgacgggaaggtggatcccgctgggagatacttt 46920292

                     
Query: 465      gctgg 469
                |||||
Sbjct: 46920291 gctgg 46920287



 Score =  363 bits (183), Expect = 1e-97
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                            
Query: 103      gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 162
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565868 gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 46565927

                                                                            
Query: 163      gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 222
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565928 gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 46565987

                                                                            
Query: 223      ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 282
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565988 ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 46566047

                   
Query: 283      tgg 285
                |||
Sbjct: 46566048 tgg 46566050



 Score =  363 bits (183), Expect = 1e-97
 Identities = 183/183 (100%)
 Strand = Plus / Minus

                                                                            
Query: 103      gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 162
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923441 gtagatctccccccatgacaatgtcttccattaagattgagtgcgttttgcgggagaact 46923382

                                                                            
Query: 163      gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 222
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923381 gccactgcggtgagtcgcccgtgtgggaggaagcgtccaactctctgctcttcgtggata 46923322

                                                                            
Query: 223      ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 282
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46923321 ttcccgccaaaaaggtttgccggtggaatgcgctcagcaagcaagtgcagcgagtgaccc 46923262

                   
Query: 283      tgg 285
                |||
Sbjct: 46923261 tgg 46923259



 Score =  248 bits (125), Expect = 4e-63
 Identities = 131/133 (98%)
 Strand = Plus / Plus

                                                                            
Query: 685      ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 744
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46583782 ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 46583841

                                                                            
Query: 745      ttgatactgaggggaagctctgggtggcctgttacaatggaagaagagtgatccgcctgg 804
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 46583842 ttgatactgaggggaagctctgggtggcctgttacaatggaggaagagtgatccgcctgg 46583901

                             
Query: 805      atcctgaaacagg 817
                ||||||| |||||
Sbjct: 46583902 atcctgagacagg 46583914



 Score =  248 bits (125), Expect = 4e-63
 Identities = 131/133 (98%)
 Strand = Plus / Minus

                                                                            
Query: 685      ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 744
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46905438 ccaaccgcagaagcatttacaagatggagaaagaagaacacatcccagatggaatgtgca 46905379

                                                                            
Query: 745      ttgatactgaggggaagctctgggtggcctgttacaatggaagaagagtgatccgcctgg 804
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 46905378 ttgatactgaggggaagctctgggtggcctgttacaatggaggaagagtgatccgcctgg 46905319

                             
Query: 805      atcctgaaacagg 817
                ||||||| |||||
Sbjct: 46905318 atcctgagacagg 46905306



 Score =  155 bits (78), Expect = 5e-35
 Identities = 95/103 (92%)
 Strand = Plus / Plus

                                                                            
Query: 1        cagtcagctttccctnnnnnnntcactagcaccaaggtgtggctgttggggtgttgcttt 60
                |||||||||||||||       |||||||| |||||||||||||||||||||||||||||
Sbjct: 46565000 cagtcagctttccctgggggggtcactagcgccaaggtgtggctgttggggtgttgcttt 46565059

                                                           
Query: 61       tctgcggctctcttttttaaagattgcttaacaaacagcactg 103
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46565060 tctgcggctctcttttttaaagattgcttaacaaacagcactg 46565102



 Score =  155 bits (78), Expect = 5e-35
 Identities = 95/103 (92%)
 Strand = Plus / Minus

                                                                            
Query: 1        cagtcagctttccctnnnnnnntcactagcaccaaggtgtggctgttggggtgttgcttt 60
                |||||||||||||||       |||||||| |||||||||||||||||||||||||||||
Sbjct: 46924309 cagtcagctttccctgggggggtcactagcgccaaggtgtggctgttggggtgttgcttt 46924250

                                                           
Query: 61       tctgcggctctcttttttaaagattgcttaacaaacagcactg 103
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46924249 tctgcggctctcttttttaaagattgcttaacaaacagcactg 46924207



 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 61/65 (93%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 825      ctccaaaccgtgaaagttgcctgttgaaaaaacaacctcctgctgctttggaaggaagga 884
                |||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 46584593 ctccaaaccgtgaa-gttgcctgttgataaaacaacctcatgctgctttggagggaagga 46584651

                     
Query: 885      ttact 889
                |||||
Sbjct: 46584652 ttact 46584656



 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 61/65 (93%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                            
Query: 825      ctccaaaccgtgaaagttgcctgttgaaaaaacaacctcctgctgctttggaaggaagga 884
                |||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 46904627 ctccaaaccgtgaa-gttgcctgttgataaaacaacctcatgctgctttggagggaagga 46904569

                     
Query: 885      ttact 889
                |||||
Sbjct: 46904568 ttact 46904564


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,110,635
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 12
Length of query: 889
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 868
Effective length of database: 2,808,413,156
Effective search space: 2437702619408
Effective search space used: 2437702619408
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)