Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012930
(1110 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068802.1| microtubule-associated protein RP/EB family ... 509 e-144
Alignment gi|NP_001069385.1| microtubule-associated protein RP/EB family ... 336 2e-92
Alignment gi|NP_001029546.1| microtubule-associated protein RP/EB family ... 315 6e-86
>ref|NP_001068802.1| microtubule-associated protein RP/EB family member 1 [Bos taurus].
Length = 268
Score = 509 bits (1312), Expect = e-144
Identities = 252/257 (98%), Positives = 254/257 (98%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GK+YDPVAARQGQETA+APSLVAPALNKPKKPLSSS AAPQRPI THRTTA PKAGPGVV
Sbjct: 121 GKEYDPVAARQGQETAMAPSLVAPALNKPKKPLSSSSAAPQRPITTHRTTATPKAGPGVV 180
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ
Sbjct: 181 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 240
Query: 790 RIVDILYATDEGFVIPD 840
RIVDILYATDEGFVIPD
Sbjct: 241 RIVDILYATDEGFVIPD 257
>ref|NP_001069385.1| microtubule-associated protein RP/EB family member 3 [Bos taurus].
Length = 266
Score = 336 bits (862), Expect = 2e-92
Identities = 173/262 (66%), Positives = 202/262 (77%), Gaps = 5/262 (1%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTS+NLSRHDMLAW+N+SL LN TKIEQLCSGAAYCQFMDMLFPG + L+K
Sbjct: 1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FK+MGVDKIIPV+KLVKGKFQDNFEF+QWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GKDY+P+ ARQGQ+ A P+ V P +S P+ + R + A P ++
Sbjct: 121 GKDYNPLLARQGQDVAPPPNPV---------PQRTSPTGPKNMQTSGRLSNV--APPCIL 169
Query: 610 RKNP-----GVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGEN 774
RKNP G D + EL QQ+ LKLTV+ LEKERDFYF KLR+IELICQE+E EN
Sbjct: 170 RKNPPSARNGGHETDAQILELNQQLLDLKLTVDGLEKERDFYFSKLRDIELICQEHESEN 229
Query: 775 NPVLQRIVDILYATDEGFVIPD 840
+PV+ I+ ILYAT+EGF P+
Sbjct: 230 SPVISGIIGILYATEEGFAPPE 251
>ref|NP_001029546.1| microtubule-associated protein RP/EB family member 2 [Bos taurus].
Length = 326
Score = 315 bits (806), Expect = 6e-86
Identities = 157/277 (56%), Positives = 202/277 (72%), Gaps = 15/277 (5%)
Frame = +1
Query: 37 GQRTWSRGEPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMD 216
G+R++S G MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMD
Sbjct: 35 GERSYSWG---MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMD 91
Query: 217 MLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQ 396
MLFPG I+LKKVKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+Q
Sbjct: 92 MLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQ 151
Query: 397 WFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLS 531
WFKKF+DANYDGK+YDPV ARQGQ+ P N PKK P S
Sbjct: 152 WFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAS 211
Query: 532 SSGAAPQRPIATHRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKER 711
G+ P RP + R +++ A R + + + + +L +QV+ LKL +E +EKER
Sbjct: 212 KPGSTPSRPSSAKRASSSGSAS----RSDKDL---ETQVIQLNEQVHSLKLALEGVEKER 264
Query: 712 DFYFGKLRNIELICQENEGENNPVLQRIVDILYATDE 822
DFYFGKLR IEL+CQE+ EN+ ++QR++D+LYA+DE
Sbjct: 265 DFYFGKLREIELLCQEHGQENDDLVQRLMDVLYASDE 301
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,241,878
Number of extensions: 946657
Number of successful extensions: 3110
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 3
Length of query: 370
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,240,222
Effective search space: 3787899052
Effective search space used: 3787899052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012930
(1110 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851025.1| PREDICTED: similar to Microtubule-associated pr... 536 e-152
Alignment gi|XP_534382.2| PREDICTED: similar to Microtubule-associated pr... 498 e-141
Alignment gi|XP_533170.2| PREDICTED: similar to Microtubule-associated pr... 485 e-137
Alignment gi|XP_538061.2| PREDICTED: similar to Microtubule-associated pr... 458 e-129
Alignment gi|XP_852075.1| PREDICTED: similar to Microtubule-associated pr... 422 e-118
Alignment gi|XP_532440.1| PREDICTED: similar to Microtubule-associated pr... 411 e-115
Alignment gi|XP_864975.1| PREDICTED: similar to Microtubule-associated pr... 407 e-113
Alignment gi|XP_851284.1| PREDICTED: similar to Microtubule-associated pr... 395 e-110
Alignment gi|XP_848758.1| PREDICTED: similar to Microtubule-associated pr... 378 e-110
Alignment gi|XP_855299.1| PREDICTED: similar to Microtubule-associated pr... 388 e-108
>ref|XP_851025.1| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 359
Score = 536 bits (1382), Expect = e-152
Identities = 268/280 (95%), Positives = 270/280 (96%)
Frame = +1
Query: 1 FELDEDGTGAGYGQRTWSRGEPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQ 180
FE DEDG AG+ Q T SR EPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQ
Sbjct: 69 FERDEDGIEAGHRQWTRSRREPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQ 128
Query: 181 LCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLV 360
LCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNF+ILQAGFKRMGVDKIIPVDKLV
Sbjct: 129 LCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFEILQAGFKRMGVDKIIPVDKLV 188
Query: 361 KGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSG 540
KGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLV PALNKPKKPLSSS
Sbjct: 189 KGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVVPALNKPKKPLSSSS 248
Query: 541 AAPQRPIATHRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFY 720
AAPQRPIATHRTTA PKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFY
Sbjct: 249 AAPQRPIATHRTTATPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFY 308
Query: 721 FGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPD 840
FGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPD
Sbjct: 309 FGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPD 348
>ref|XP_534382.2| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 268
Score = 498 bits (1282), Expect = e-141
Identities = 248/257 (96%), Positives = 250/257 (97%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYST VTSDNLSR DMLAWINESLQLNLTKI QLCSGAAYC+FMDMLFPGSIALKK
Sbjct: 1 MAVNVYSTFVTSDNLSRRDMLAWINESLQLNLTKIAQLCSGAAYCRFMDMLFPGSIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYIQNFKILQAGFKRM VDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMNVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSS AAPQRPIATHRTTA PKAG GVV
Sbjct: 121 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGSGVV 180
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
RKNPGVGNGDDEAAELMQQVNVLKLTVEDL+KERDFYFGKLRNIELICQENEGENNPVLQ
Sbjct: 181 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLDKERDFYFGKLRNIELICQENEGENNPVLQ 240
Query: 790 RIVDILYATDEGFVIPD 840
RIVDILYATDEGFVIPD
Sbjct: 241 RIVDILYATDEGFVIPD 257
>ref|XP_533170.2| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 261
Score = 485 bits (1249), Expect = e-137
Identities = 243/252 (96%), Positives = 244/252 (96%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYIQNFKILQAGFKRM VDKIIPVDKLVKGKFQD+FEF QWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMSVDKIIPVDKLVKGKFQDHFEFFQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSS AAPQRPIATHRTTA PKAGPG V
Sbjct: 121 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGEV 180
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
RKNP VGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENE ENN VLQ
Sbjct: 181 RKNPDVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENERENNLVLQ 240
Query: 790 RIVDILYATDEG 825
RIVDILYATDEG
Sbjct: 241 RIVDILYATDEG 252
>ref|XP_538061.2| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 249
Score = 458 bits (1179), Expect = e-129
Identities = 226/238 (94%), Positives = 230/238 (96%)
Frame = +1
Query: 127 MLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQ 306
MLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGS ALKKVKFQAKL HEYIQNFKILQ
Sbjct: 1 MLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSTALKKVKFQAKLVHEYIQNFKILQ 60
Query: 307 AGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAP 486
AGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQ QETAVAP
Sbjct: 61 AGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQSQETAVAP 120
Query: 487 SLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQ 666
SLVAPALNKPKKPLSSS APQRPIATHRTTA PKAG GVVRKNPGV NGDDEAAELMQQ
Sbjct: 121 SLVAPALNKPKKPLSSSSEAPQRPIATHRTTATPKAGRGVVRKNPGVDNGDDEAAELMQQ 180
Query: 667 VNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVIPD 840
VNVLKLT+EDLEKERDFYFGKLRNIELICQENEGEN+PVLQRI+D+LYATDEGFVIPD
Sbjct: 181 VNVLKLTIEDLEKERDFYFGKLRNIELICQENEGENSPVLQRILDVLYATDEGFVIPD 238
>ref|XP_852075.1| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) isoform 1 [Canis familiaris].
Length = 259
Score = 422 bits (1085), Expect = e-118
Identities = 213/256 (83%), Positives = 227/256 (88%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTS+N SRHDMLAWINESL+LNLTK+EQLCSGAAYCQFMD+LFPG IALKK
Sbjct: 1 MAVNVYSTSVTSENRSRHDMLAWINESLRLNLTKLEQLCSGAAYCQFMDILFPGCIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKF+AKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWF+KFFDANYD
Sbjct: 61 VKFRAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFRKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
G DYDPVAAR+GQETAVAPSLV PALNK KKPLS S +APQRP THRTT KAG
Sbjct: 121 GTDYDPVAARRGQETAVAPSLVTPALNKLKKPLSPSQSAPQRPTGTHRTTTTLKAGQ--- 177
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
GD + A L+QQVNVLKLT++DLEKERDFYFGKLRNI+LICQENEGENN VLQ
Sbjct: 178 ------CGGDGQVAVLIQQVNVLKLTIKDLEKERDFYFGKLRNIDLICQENEGENNLVLQ 231
Query: 790 RIVDILYATDEGFVIP 837
RIVDILYAT +GFVIP
Sbjct: 232 RIVDILYATHQGFVIP 247
>ref|XP_532440.1| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 234
Score = 411 bits (1057), Expect = e-115
Identities = 207/227 (91%), Positives = 210/227 (92%)
Frame = +1
Query: 1 FELDEDGTGAGYGQRTWSRGEPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQ 180
FE DED T A + Q TWSR EPKMAVNVYSTSVTSDNLSRHD LAWINESLQLNL KIEQ
Sbjct: 6 FEPDEDRTEARHRQWTWSRQEPKMAVNVYSTSVTSDNLSRHDTLAWINESLQLNLIKIEQ 65
Query: 181 LCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLV 360
LCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRM VDKIIPVD+LV
Sbjct: 66 LCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMDVDKIIPVDQLV 125
Query: 361 KGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSG 540
KGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSS
Sbjct: 126 KGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSS 185
Query: 541 AAPQRPIATHRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLK 681
A P RPIATHRTTA PKAG VVRKNPGVGN DD+AAELMQQVNVLK
Sbjct: 186 AVPHRPIATHRTTATPKAGLSVVRKNPGVGNRDDKAAELMQQVNVLK 232
>ref|XP_864975.1| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) isoform 2 [Canis familiaris].
Length = 256
Score = 407 bits (1045), Expect = e-113
Identities = 207/258 (80%), Positives = 223/258 (86%), Gaps = 2/258 (0%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTS+N SRHDMLAWINESL+LNLTK+EQLCSGAAYCQFMD+LFPG IALKK
Sbjct: 1 MAVNVYSTSVTSENRSRHDMLAWINESLRLNLTKLEQLCSGAAYCQFMDILFPGCIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKF+AKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWF+KFFDANYD
Sbjct: 61 VKFRAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFRKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
G DYDPVAAR+GQETA KPLS S +APQRP THRTT KAG V
Sbjct: 121 GTDYDPVAARRGQETA--------------KPLSPSQSAPQRPTGTHRTTTTLKAGQCGV 166
Query: 610 RKNP--GVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPV 783
+KNP G+G GD + A L+QQVNVLKLT++DLEKERDFYFGKLRNI+LICQENEGENN V
Sbjct: 167 QKNPVVGMGKGDGQVAVLIQQVNVLKLTIKDLEKERDFYFGKLRNIDLICQENEGENNLV 226
Query: 784 LQRIVDILYATDEGFVIP 837
LQRIVDILYAT +GFVIP
Sbjct: 227 LQRIVDILYATHQGFVIP 244
>ref|XP_851284.1| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 219
Score = 395 bits (1016), Expect = e-110
Identities = 196/208 (94%), Positives = 200/208 (96%)
Frame = +1
Query: 217 MLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQ 396
M FPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQ+NFEFVQ
Sbjct: 1 MFFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQENFEFVQ 60
Query: 397 WFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRT 576
WFKKFFDANYDGKDYDPV ARQGQ TAVAPSLVAPALNKPKKPLSSS AAPQRPIAT+RT
Sbjct: 61 WFKKFFDANYDGKDYDPVGARQGQVTAVAPSLVAPALNKPKKPLSSSSAAPQRPIATYRT 120
Query: 577 TAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQ 756
TA PKAGP VVRKNPGV NGDDEAAELMQQVNVLK TVEDLEKER+FYFGKLRNIELICQ
Sbjct: 121 TATPKAGPSVVRKNPGVCNGDDEAAELMQQVNVLKFTVEDLEKERNFYFGKLRNIELICQ 180
Query: 757 ENEGENNPVLQRIVDILYATDEGFVIPD 840
+NEGENNPVLQRIVDILYATDEGFVIPD
Sbjct: 181 KNEGENNPVLQRIVDILYATDEGFVIPD 208
>ref|XP_848758.1| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 244
Score = 378 bits (971), Expect(2) = e-110
Identities = 199/257 (77%), Positives = 202/257 (78%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNV+STS+TSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAY
Sbjct: 1 MAVNVHSTSITSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAY---------------- 44
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
PVDKLVKG FQDNFEFVQWFKKFFDANYD
Sbjct: 45 ------------------------------FPVDKLVKGNFQDNFEFVQWFKKFFDANYD 74
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GKDYDPVAARQGQETAV LVAPAL+KPKKPLSSS AAPQRP ATHRTTA PKAG GVV
Sbjct: 75 GKDYDPVAARQGQETAVVLFLVAPALDKPKKPLSSSRAAPQRPTATHRTTATPKAGLGVV 134
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ
Sbjct: 135 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 194
Query: 790 RIVDILYATDEGFVIPD 840
RIVDILYATDEGFVIPD
Sbjct: 195 RIVDILYATDEGFVIPD 211
Score = 39.3 bits (90), Expect(2) = e-110
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +2
Query: 854 RRSKKSINSLDQPSNIRILHSKSCA 928
+ KSINSLDQ S+IRI HSKSCA
Sbjct: 220 QEDNKSINSLDQQSDIRIFHSKSCA 244
>ref|XP_855299.1| PREDICTED: similar to Microtubule-associated protein RP/EB family
member 1 (APC-binding protein EB1) (End-binding protein
1) (EB1) [Canis familiaris].
Length = 223
Score = 388 bits (997), Expect = e-108
Identities = 195/213 (91%), Positives = 198/213 (92%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYS SVT DNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQF DMLFPGSIALKK
Sbjct: 1 MAVNVYSMSVTCDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFRDMLFPGSIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
+KFQA LEHEYIQNFKILQAG K M VDKIIPVDKLVKGKFQDNFEFVQWFKKFF+ANYD
Sbjct: 61 MKFQANLEHEYIQNFKILQAGVKTMDVDKIIPVDKLVKGKFQDNFEFVQWFKKFFNANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GKDYDPVAARQGQETAVAPS VAPALNKPKKPLSSS AAP RPIATHRTT KAGPGVV
Sbjct: 121 GKDYDPVAARQGQETAVAPSHVAPALNKPKKPLSSSSAAPLRPIATHRTTGTDKAGPGVV 180
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKE 708
KNPGVG+GDDEAAELM QVNVLKLTVEDLEKE
Sbjct: 181 GKNPGVGSGDDEAAELMHQVNVLKLTVEDLEKE 213
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,880,865
Number of extensions: 976452
Number of successful extensions: 3094
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 3080
Number of HSP's successfully gapped: 29
Length of query: 370
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 266
Effective length of database: 15,407,560
Effective search space: 4098410960
Effective search space used: 4098410960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012930
(1110 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038078.1| microtubule-associated protein RP/EB family ... 518 e-147
Alignment gi|XP_003127947.2| PREDICTED: microtubule-associated protein RP... 313 1e-85
Alignment gi|XP_003354947.1| PREDICTED: microtubule-associated protein RP... 266 2e-71
Alignment gi|XP_003125359.2| PREDICTED: microtubule-associated protein RP... 256 2e-68
>ref|NP_001038078.1| microtubule-associated protein RP/EB family member 1 [Sus scrofa].
Length = 268
Score = 518 bits (1333), Expect = e-147
Identities = 257/257 (100%), Positives = 257/257 (100%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV
Sbjct: 121 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 180
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ
Sbjct: 181 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 240
Query: 790 RIVDILYATDEGFVIPD 840
RIVDILYATDEGFVIPD
Sbjct: 241 RIVDILYATDEGFVIPD 257
>ref|XP_003127947.2| PREDICTED: microtubule-associated protein RP/EB family member
2-like [Sus scrofa].
Length = 429
Score = 313 bits (802), Expect = 1e-85
Identities = 155/281 (55%), Positives = 203/281 (72%), Gaps = 15/281 (5%)
Frame = +1
Query: 37 GQRTWSRGEPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMD 216
G+R++S G MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMD
Sbjct: 35 GERSYSWG---MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMD 91
Query: 217 MLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQ 396
MLFPG I+LKKVKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+Q
Sbjct: 92 MLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQ 151
Query: 397 WFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLS 531
WFKKF+DANYDGK+YDPV ARQGQ+ P N PKK P S
Sbjct: 152 WFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAS 211
Query: 532 SSGAAPQRPIATHRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKER 711
G+ P RP + R +++ A + + + + +L +QV+ LKL +E +EKER
Sbjct: 212 KPGSTPSRPSSAKRASSSSSA-------SKSDKDLETQVIQLNEQVHSLKLALEGVEKER 264
Query: 712 DFYFGKLRNIELICQENEGENNPVLQRIVDILYATDEGFVI 834
DFYFGKLR IEL+CQE+ EN+ ++QR++++LYA++E V+
Sbjct: 265 DFYFGKLREIELLCQEHGQENDDLVQRLMEVLYASEEHLVV 305
>ref|XP_003354947.1| PREDICTED: microtubule-associated protein RP/EB family member
3-like [Sus scrofa].
Length = 238
Score = 266 bits (679), Expect = 2e-71
Identities = 150/262 (57%), Positives = 175/262 (66%), Gaps = 5/262 (1%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTS+NLSRHDMLAW+N+SL LN TKIEQLCSGAAYCQFMDMLFPG + L+K
Sbjct: 1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FK+MGVDKIIPV+KLVKGKFQDNFE
Sbjct: 61 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEL------------- 107
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
+V LV P +S P+ + R + A P ++
Sbjct: 108 ---------------SVLRILV---------PQRTSPTGPKNMQTSGRLSNV--APPCIL 141
Query: 610 RKNP-----GVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGEN 774
RKNP G D + EL QQ+ LKLTV+ LEKERDFYF KLR+IELICQE+E EN
Sbjct: 142 RKNPPSARNGGHETDAQILELNQQLLDLKLTVDGLEKERDFYFSKLRDIELICQEHESEN 201
Query: 775 NPVLQRIVDILYATDEGFVIPD 840
+PV+ I+ ILYAT+EGF P+
Sbjct: 202 SPVIAGIIGILYATEEGFAPPE 223
>ref|XP_003125359.2| PREDICTED: microtubule-associated protein RP/EB family member
3-like, partial [Sus scrofa].
Length = 154
Score = 256 bits (653), Expect = 2e-68
Identities = 121/151 (80%), Positives = 134/151 (88%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTS+NLSRHDMLAW+N+SL LN TKIEQLCSGAAYCQFMDMLFPG + L+K
Sbjct: 1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FK+MGVDKIIPV+KLVKGKFQDNFEF+QWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKK 522
GKDY+P+ ARQGQ+ A P+ NK KK
Sbjct: 121 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKK 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,575,307
Number of extensions: 607186
Number of successful extensions: 1975
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1972
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,854,232
Effective search space: 2390642640
Effective search space used: 2390642640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012930
(1110 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031922.1| microtubule-associated protein RP/EB family mem... 501 e-142
Alignment gi|NP_579928.1| microtubule-associated protein RP/EB family mem... 342 2e-94
Alignment gi|NP_694698.3| microtubule-associated protein RP/EB family mem... 313 2e-85
Alignment gi|NP_001156414.1| microtubule-associated protein RP/EB family ... 310 2e-84
Alignment gi|NP_001156413.1| microtubule-associated protein RP/EB family ... 310 2e-84
>ref|NP_031922.1| microtubule-associated protein RP/EB family member 1 [Mus
musculus].
Length = 268
Score = 501 bits (1290), Expect = e-142
Identities = 249/257 (96%), Positives = 253/257 (98%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GK+YDPVAARQGQETAVAPSLVAPAL+KPKKPL SS AAPQRPIAT RTTAAPKAGPG+V
Sbjct: 121 GKEYDPVAARQGQETAVAPSLVAPALSKPKKPLGSSTAAPQRPIATQRTTAAPKAGPGMV 180
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
RKNPGVGNGDDEAAELMQQV VLKLTVEDLEKERDFYFGKLRNIELICQENEGEN+PVLQ
Sbjct: 181 RKNPGVGNGDDEAAELMQQVKVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQ 240
Query: 790 RIVDILYATDEGFVIPD 840
RIVDILYATDEGFVIPD
Sbjct: 241 RIVDILYATDEGFVIPD 257
>ref|NP_579928.1| microtubule-associated protein RP/EB family member 3 [Mus
musculus].
Length = 281
Score = 342 bits (878), Expect = 2e-94
Identities = 177/268 (66%), Positives = 204/268 (76%), Gaps = 11/268 (4%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTS+NLSRHDMLAW+N+SL LN TKIEQLCSGAAYCQFMDMLFPG + L+K
Sbjct: 1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FK+MGVDKIIPV+KLVKGKFQDNFEF+QWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPK------ 591
GKDY+P+ ARQGQ+ A P+ NK KK + + A PQR T
Sbjct: 121 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGT--AVPQRTSPTGPKNMQTSGRLSNV 178
Query: 592 AGPGVVRKNP-----GVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQ 756
A P ++RKNP G D + EL QQ+ LKLTV+ LEKERDFYF KLR+IELICQ
Sbjct: 179 APPCILRKNPPSARNGGHEADAQILELNQQLLDLKLTVDGLEKERDFYFSKLRDIELICQ 238
Query: 757 ENEGENNPVLQRIVDILYATDEGFVIPD 840
E+E EN+PV+ I+ ILYAT+EGF P+
Sbjct: 239 EHESENSPVISGIIGILYATEEGFAPPE 266
>ref|NP_694698.3| microtubule-associated protein RP/EB family member 2 isoform 1 [Mus
musculus].
Length = 326
Score = 313 bits (802), Expect = 2e-85
Identities = 156/277 (56%), Positives = 202/277 (72%), Gaps = 15/277 (5%)
Frame = +1
Query: 37 GQRTWSRGEPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMD 216
G+R++S G MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMD
Sbjct: 35 GERSYSWG---MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMD 91
Query: 217 MLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQ 396
MLFPG I+LKKVKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+Q
Sbjct: 92 MLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQ 151
Query: 397 WFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLS 531
WFKKF+DANYDGK+YDPV ARQGQ+ P N PKK P S
Sbjct: 152 WFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAS 211
Query: 532 SSGAAPQRPIATHRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKER 711
G+ P RP + R +++ A R + + + + +L +QV+ LKL +E +EKER
Sbjct: 212 KPGSTPSRPSSAKRASSSGSAS----RSDKDL---ETQVIQLNEQVHSLKLALEGVEKER 264
Query: 712 DFYFGKLRNIELICQENEGENNPVLQRIVDILYATDE 822
DFYFGKLR IEL+CQE+ EN+ ++QR++++LYA+DE
Sbjct: 265 DFYFGKLREIELLCQEHGQENDDLVQRLMEVLYASDE 301
>ref|NP_001156414.1| microtubule-associated protein RP/EB family member 2 isoform 3 [Mus
musculus].
Length = 284
Score = 310 bits (793), Expect = 2e-84
Identities = 152/266 (57%), Positives = 195/266 (73%), Gaps = 15/266 (5%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKK
Sbjct: 1 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYD
Sbjct: 61 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLSSSGAAPQRPIA 564
GK+YDPV ARQGQ+ P N PKK P S G+ P RP +
Sbjct: 121 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPASKPGSTPSRPSS 180
Query: 565 THRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 744
R +++ A R + + + + +L +QV+ LKL +E +EKERDFYFGKLR IE
Sbjct: 181 AKRASSSGSAS----RSDKDL---ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIE 233
Query: 745 LICQENEGENNPVLQRIVDILYATDE 822
L+CQE+ EN+ ++QR++++LYA+DE
Sbjct: 234 LLCQEHGQENDDLVQRLMEVLYASDE 259
>ref|NP_001156413.1| microtubule-associated protein RP/EB family member 2 isoform 2 [Mus
musculus].
Length = 317
Score = 310 bits (793), Expect = 2e-84
Identities = 152/266 (57%), Positives = 195/266 (73%), Gaps = 15/266 (5%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKK
Sbjct: 34 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 93
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYD
Sbjct: 94 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 153
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLSSSGAAPQRPIA 564
GK+YDPV ARQGQ+ P N PKK P S G+ P RP +
Sbjct: 154 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPASKPGSTPSRPSS 213
Query: 565 THRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 744
R +++ A R + + + + +L +QV+ LKL +E +EKERDFYFGKLR IE
Sbjct: 214 AKRASSSGSAS----RSDKDL---ETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIE 266
Query: 745 LICQENEGENNPVLQRIVDILYATDE 822
L+CQE+ EN+ ++QR++++LYA+DE
Sbjct: 267 LLCQEHGQENDDLVQRLMEVLYASDE 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,500,002
Number of extensions: 823123
Number of successful extensions: 2680
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2671
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 267
Effective length of database: 12,523,851
Effective search space: 3343868217
Effective search space used: 3343868217
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012930
(1110 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036457.1| microtubule-associated protein RP/EB family mem... 506 e-143
Alignment gi|NP_036458.2| microtubule-associated protein RP/EB family mem... 342 5e-94
Alignment gi|NP_055083.1| microtubule-associated protein RP/EB family mem... 311 5e-85
Alignment gi|NP_001137298.1| microtubule-associated protein RP/EB family ... 308 6e-84
Alignment gi|NP_001137299.1| microtubule-associated protein RP/EB family ... 308 6e-84
>ref|NP_036457.1| microtubule-associated protein RP/EB family member 1 [Homo
sapiens].
Length = 268
Score = 506 bits (1303), Expect = e-143
Identities = 251/257 (97%), Positives = 254/257 (98%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
Sbjct: 1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPKAGPGVV 609
GKDYDPVAARQGQETAVAPSLVAPALNKPKKPL+SS AAPQRPI+T RT AAPKAGPGVV
Sbjct: 121 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVV 180
Query: 610 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQ 789
RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGEN+PVLQ
Sbjct: 181 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQ 240
Query: 790 RIVDILYATDEGFVIPD 840
RIVDILYATDEGFVIPD
Sbjct: 241 RIVDILYATDEGFVIPD 257
>ref|NP_036458.2| microtubule-associated protein RP/EB family member 3 [Homo
sapiens].
Length = 281
Score = 342 bits (876), Expect = 5e-94
Identities = 177/268 (66%), Positives = 204/268 (76%), Gaps = 11/268 (4%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTSVTS+NLSRHDMLAW+N+SL LN TKIEQLCSGAAYCQFMDMLFPG + L+K
Sbjct: 1 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FK+MGVDKIIPV+KLVKGKFQDNFEF+QWFKKFFDANYD
Sbjct: 61 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLSSSGAAPQRPIATHRTTAAPK------ 591
GKDY+P+ ARQGQ+ A P+ NK KK + + A PQR T
Sbjct: 121 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLIGT--AVPQRTSPTGPKNMQTSGRLSNV 178
Query: 592 AGPGVVRKNP-----GVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQ 756
A P ++RKNP G D + EL QQ+ LKLTV+ LEKERDFYF KLR+IELICQ
Sbjct: 179 APPCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQ 238
Query: 757 ENEGENNPVLQRIVDILYATDEGFVIPD 840
E+E EN+PV+ I+ ILYAT+EGF P+
Sbjct: 239 EHESENSPVISGIIGILYATEEGFAPPE 266
>ref|NP_055083.1| microtubule-associated protein RP/EB family member 2 isoform 1
[Homo sapiens].
Length = 327
Score = 311 bits (798), Expect = 5e-85
Identities = 155/277 (55%), Positives = 201/277 (72%), Gaps = 15/277 (5%)
Frame = +1
Query: 37 GQRTWSRGEPKMAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMD 216
G+R++S G MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMD
Sbjct: 36 GERSYSWG---MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMD 92
Query: 217 MLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQ 396
MLFPG I+LKKVKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+Q
Sbjct: 93 MLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQ 152
Query: 397 WFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLS 531
WFKKF+DANYDGK+YDPV ARQGQ+ P N PKK P +
Sbjct: 153 WFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAA 212
Query: 532 SSGAAPQRPIATHRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKER 711
G+ P RP + R +++ A + + + + +L +QV+ LKL +E +EKER
Sbjct: 213 KPGSTPSRPSSAKRASSSGSA-------SKSDKDLETQVIQLNEQVHSLKLALEGVEKER 265
Query: 712 DFYFGKLRNIELICQENEGENNPVLQRIVDILYATDE 822
DFYFGKLR IEL+CQE+ EN+ ++QR++DILYA++E
Sbjct: 266 DFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEE 302
>ref|NP_001137298.1| microtubule-associated protein RP/EB family member 2 isoform 2
[Homo sapiens].
Length = 284
Score = 308 bits (789), Expect = 6e-84
Identities = 151/266 (56%), Positives = 194/266 (72%), Gaps = 15/266 (5%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKK
Sbjct: 1 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 60
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYD
Sbjct: 61 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 120
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLSSSGAAPQRPIA 564
GK+YDPV ARQGQ+ P N PKK P + G+ P RP +
Sbjct: 121 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSS 180
Query: 565 THRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 744
R +++ A + + + + +L +QV+ LKL +E +EKERDFYFGKLR IE
Sbjct: 181 AKRASSSGSA-------SKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIE 233
Query: 745 LICQENEGENNPVLQRIVDILYATDE 822
L+CQE+ EN+ ++QR++DILYA++E
Sbjct: 234 LLCQEHGQENDDLVQRLMDILYASEE 259
>ref|NP_001137299.1| microtubule-associated protein RP/EB family member 2 isoform 3
[Homo sapiens].
Length = 315
Score = 308 bits (789), Expect = 6e-84
Identities = 151/266 (56%), Positives = 194/266 (72%), Gaps = 15/266 (5%)
Frame = +1
Query: 70 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK 249
MAVNVYSTS+T + +SRHD++AW+N+ + LN TK+EQLCSGAAYCQFMDMLFPG I+LKK
Sbjct: 32 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK 91
Query: 250 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD 429
VKFQAKLEHEYI NFK+LQA FKRM VDK+IPV+KLVKG+FQDN +F+QWFKKF+DANYD
Sbjct: 92 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD 151
Query: 430 GKDYDPVAARQGQETAVAPSLVAPALNKPKK---------------PLSSSGAAPQRPIA 564
GK+YDPV ARQGQ+ P N PKK P + G+ P RP +
Sbjct: 152 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANSPTAGAAKSSPAAKPGSTPSRPSS 211
Query: 565 THRTTAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIE 744
R +++ A + + + + +L +QV+ LKL +E +EKERDFYFGKLR IE
Sbjct: 212 AKRASSSGSA-------SKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIE 264
Query: 745 LICQENEGENNPVLQRIVDILYATDE 822
L+CQE+ EN+ ++QR++DILYA++E
Sbjct: 265 LLCQEHGQENDDLVQRLMDILYASEE 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,264,550
Number of extensions: 964341
Number of successful extensions: 3198
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3190
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,868,908
Effective search space: 3955129528
Effective search space used: 3955129528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012930
(1110 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 737 0.0
Sscrofa_Chr17 464 e-128
Sscrofa_Chr03 90 3e-15
>Sscrofa_Chr01
|| Length = 315321322
Score = 737 bits (372), Expect = 0.0
Identities = 851/1005 (84%), Gaps = 43/1005 (4%)
Strand = Plus / Plus
Query: 66 gaagatggcagtgaatgtgtactcaacgtccgtcaccagcgataacctcagtcgacatga 125
|||||||||||||||||||||||||| | |||||||| ||||||||| |||| |||||
Sbjct: 212549044 gaagatggcagtgaatgtgtactcaatgctggtcaccagtgataacctctgtcgccatga 212549103
Query: 126 catgctggcctggatcaatgagtctctgcagttgaatctaacaaagattgaacagttgtg 185
|| |||||||||||||| ||||||| |||||||||||||| ||| || || ||||
Sbjct: 212549104 caagctggcctggatcagtgagtct--gcagttgaatctaa----gatccaatagctgtg 212549157
Query: 186 ctcaggggctgcctattgtcagtttatggacatgctgttccctggctccattgccttgaa 245
|||||||||||||||||||| | |||||| |||| | ||||||||||||||||||||||
Sbjct: 212549158 ctcaggggctgcctattgtccatctatggagatgccgatccctggctccattgccttgaa 212549217
Query: 246 gaaagtgaaattccaagctaagctagaacatgaatacatccagaacttcaaaatactaca 305
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 212549218 gaaactgaaattccaagctaagctagaacaccaatacatccagaacttcaaaatactaca 212549277
Query: 306 ggcaggttttaagaggatgggtgttgacaaaataattcctgtggacaaattagtaaaagg 365
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 212549278 agcaggttttaagaggatgagtgttgacaaaataattcctctggacaaattagtaaaagg 212549337
Query: 366 aaagtttcaggataattttgaatttgttcagtggttcaagaaattttttgatgccaa--- 422
|||||||||||| | ||||||||| ||||||||||||||||||||||| |||| ||
Sbjct: 212549338 aaagtttcaggacacttttgaattcgttcagtggttcaagaaatttttcgatgggaaaat 212549397
Query: 423 -ctacgatgggaaagactatgaccctgtagctgccagacaaggtcaagaaactgcggtgg 481
|| || | ||||||||| | |||| ||||||||||||||||||||||||||| ||
Sbjct: 212549398 tttatgacgcgaaagacta--agcctgcagctgccagacaaggtcaagaaactgcaatga 212549455
Query: 482 ccccttcccttgttgctccagctctgaacaaaccgaagaaacctctcagctct------- 534
||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 212549456 ccccttccc-tgttgctcctgctgtgaacaaacggaagaaacctctcagctctaacagtg 212549514
Query: 535 -------agcggtgcagctccacagaggcccattgcaacacacagaactactgcagcccc 587
| | ||||||||||||| |||||||||||| | ||||||||| | ||| ||||
Sbjct: 212549515 cagctccaccagtgcagctccacaaaggcccattgcagcgcacagaactgcagcaacccc 212549574
Query: 588 taaggctggcccaggtgtggtgcggaagaatcctggtgtggggaacggggatgacgaagc 647
| |||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||
Sbjct: 212549575 tgaggctggcccaggtgtggtgtggaagaatcctggtgtaaggaacggggctgatgaagc 212549634
Query: 648 agccgaattgatgcagcaggtcaacgtactgaaacttaccgttgaagatttggagaaaga 707
||| |||||||| ||||||||| | ||| ||| ||||||| | |||| |||||||| |
Sbjct: 212549635 agctgaattgatacagcaggtccatgtattgagacttaccctccaagacttggagaa--a 212549692
Query: 708 gagagatttctactttggaaaactga---gaa--acattgaattgatttgccaggagaat 762
|||||||||||| || ||||| |||| ||| |||||||||| ||| || |||||
Sbjct: 212549693 gagagatttctatttcggaaacctgaattgaattgaattgaattgaattggcaagagaac 212549752
Query: 763 gagggggaaaacaaccctgtattgcagaggat--tgtggacattctctatgccacagatg 820
|||| | |||||||| ||||| ||||| | | |||||||||| |||||||| ||||||
Sbjct: 212549753 gaggaaggaaacaaccttgtatcgcagaaggttgtgtggacattgtctatgccccagatg 212549812
Query: 821 aaggcttcgtgatacccgatgaagggggcccacaggaggagcaagaagagtattaacagc 880
||||||| |||||||| |||||||||| ||||||| ||| | |||||||| ||||||||
Sbjct: 212549813 aaggctttgtgatacctgatgaaggggtcccacagagggaactagaagagtcttaacagc 212549872
Query: 881 ctggaccagccgagcaacatccgaattcttcactccaaatcatgtgcttaactgtaaaat 940
||||||||| | |||||||| |||||||| ||||||||| ||||| ||| || ||||
Sbjct: 212549873 ctggaccagacaagcaacatgacaattcttc-ctccaaatcttgtgcataagagtgaaat 212549931
Query: 941 actcccttttattattcttaaaggactcactggt------ttcttttcataagcaaaaag 994
| |||||||||||| ||||| ||||||||||| | || |||||||||||||||||
Sbjct: 212549932 attcccttttattagtcttagaggactcactgtttgtttgtttttttcataagcaaaaag 212549991
Query: 995 tacctcttctttaagtgcactttgcagaagtttcactccttttcc 1039
||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 212549992 tacctcttcttaaagtgcacttcacagaagtttcactccttttcc 212550036
>Sscrofa_Chr17
|| Length = 69701581
Score = 464 bits (234), Expect = e-128
Identities = 278/292 (95%), Gaps = 2/292 (0%)
Strand = Plus / Plus
Query: 820 gaaggcttcgtgatacccgatgaagggggcccacaggaggagcaagaagagtattaacag 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41357379 gaaggcttcgtgatacccgatgaagggggcccacaggaggagcaagaagagtattaacag 41357438
Query: 880 cctggaccagccgagcaacatccgaattcttcactccaaatcatgtgcttaactgtaaaa 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41357439 cctggaccagccgagcaacatccgaattcttcactccaaatcatgtgcttaactgtaaaa 41357498
Query: 940 tactcccttttattattcttaaaggactcactggtttcttttcataagcaaaaagtacct 999
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 41357499 tactcccttttattattcttagaggactcactggtttcttttcataagcaaaaagtacct 41357558
Query: 1000 cttctttaagtgcactttgcagaagtttcactccttttccnnatagttngagnnntagag 1059
|||||| ||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct: 41357559 cttcttaaagtgcactttgcagaagtttcactccttttccaataagtttgagtta-ggag 41357617
Query: 1060 cttttacc-tatagcagagcagtattaccatctagttggttcacctagggaa 1110
|||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 41357618 cttttaccttatagcagagcagtattaacatctagttggttcacctagggaa 41357669
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 337 ataattcctgtggacaaattagtaaaaggaaagtttcaggataattttgaatttgttcag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41346158 ataattcctgtggacaaattagtaaaaggaaagtttcaggataattttgaatttgttcag 41346217
Query: 397 tggttcaagaaattttttgatgccaactacgatgggaaagactatgaccctgtagctgcc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41346218 tggttcaagaaattttttgatgccaactacgatgggaaagactatgaccctgtagctgcc 41346277
Query: 457 agacaaggtcaagaaactgcggtggccccttcccttgttgctccagctctgaacaaaccg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41346278 agacaaggtcaagaaactgcggtggccccttcccttgttgctccagctctgaacaaaccg 41346337
Query: 517 aagaaacctctcagctctagcggtgcag 544
||||||||||||||||||||||||||||
Sbjct: 41346338 aagaaacctctcagctctagcggtgcag 41346365
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 663 gcaggtcaacgtactgaaacttaccgttgaagatttggagaaagagagagatttctactt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41355570 gcaggtcaacgtactgaaacttaccgttgaagatttggagaaagagagagatttctactt 41355629
Query: 723 tggaaaactgagaaacattgaattgatttgccaggagaatgagggggaaaacaaccctgt 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41355630 tggaaaactgagaaacattgaattgatttgccaggagaatgagggggaaaacaaccctgt 41355689
Query: 783 attgcagaggattgtggacattctctatgccacagatg 820
||||||||||||||||||||||||||||||||||||||
Sbjct: 41355690 attgcagaggattgtggacattctctatgccacagatg 41355727
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 187 tcaggggctgcctattgtcagtttatggacatgctgttccctggctccattgccttgaag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41342963 tcaggggctgcctattgtcagtttatggacatgctgttccctggctccattgccttgaag 41343022
Query: 247 aaagtgaaattccaagctaagctagaacatgaatacatccagaacttcaaaatactacag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41343023 aaagtgaaattccaagctaagctagaacatgaatacatccagaacttcaaaatactacag 41343082
Query: 307 gcaggttttaagaggatgggtgttgacaaa 336
||||||||||||||||||||||||||||||
Sbjct: 41343083 gcaggttttaagaggatgggtgttgacaaa 41343112
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 66 gaagatggcagtgaatgtgtactcaacgtccgtcaccagcgataacctcagtcgacatga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41333112 gaagatggcagtgaatgtgtactcaacgtccgtcaccagcgataacctcagtcgacatga 41333171
Query: 126 catgctggcctggatcaatgagtctctgcagttgaatctaacaaagattgaacagttgtg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41333172 catgctggcctggatcaatgagtctctgcagttgaatctaacaaagattgaacagttgtg 41333231
Query: 186 ctcagg 191
||||||
Sbjct: 41333232 ctcagg 41333237
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 543 agctccacagaggcccattgcaacacacagaactactgcagcccctaaggctggcccagg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41349623 agctccacagaggcccattgcaacacacagaactactgcagcccctaaggctggcccagg 41349682
Query: 603 tgtggtgcggaagaatcctggtgtggggaacggggatgacgaagcagccgaattgatgca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41349683 tgtggtgcggaagaatcctggtgtggggaacggggatgacgaagcagccgaattgatgca 41349742
Query: 663 gcaggt 668
||||||
Sbjct: 41349743 gcaggt 41349748
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tttgaactagacgaagacggaaccggagccgggtacggacagcggacgtggtcccgcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41327608 tttgaactagacgaagacggaaccggagccgggtacggacagcggacgtggtcccgcgga 41327667
Query: 61 gagccg 66
||||||
Sbjct: 41327668 gagccg 41327673
>Sscrofa_Chr03
|| Length = 144787322
Score = 89.7 bits (45), Expect = 3e-15
Identities = 123/149 (82%)
Strand = Plus / Minus
Query: 188 caggggctgcctattgtcagtttatggacatgctgttccctggctccattgccttgaaga 247
||||||| ||||| || ||||| ||||||||||| |||||||||| | ||||| ||
Sbjct: 119087273 caggggccgcctactgccagttcatggacatgctcttccctggctgtgtgcacttgagga 119087214
Query: 248 aagtgaaattccaagctaagctagaacatgaatacatccagaacttcaaaatactacagg 307
| ||||| ||||| || |||||||| |||||||||||||| |||||||| | || || |
Sbjct: 119087213 aggtgaagttccaggccaagctagagcatgaatacatccacaacttcaaggtgctgcaag 119087154
Query: 308 caggttttaagaggatgggtgttgacaaa 336
||| ||| |||| ||||||||||||||||
Sbjct: 119087153 cagctttcaagaagatgggtgttgacaaa 119087125
Score = 79.8 bits (40), Expect = 3e-12
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 340 attcctgtggacaaattagtaaaaggaaagtttcaggataattttgaatttgttcagtgg 399
|||||||| || |||||||| |||||||| || || ||||||||||| ||| ||||||||
Sbjct: 119086522 attcctgtagagaaattagtgaaaggaaaattccaagataattttgagtttattcagtgg 119086463
Query: 400 ttcaagaaattttttgatgccaactacgatgg 431
|| |||||||| ||||| || ||||| |||||
Sbjct: 119086462 tttaagaaattctttgacgcaaactatgatgg 119086431
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,774,051
Number of extensions: 271
Number of successful extensions: 271
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 16
Length of query: 1110
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1089
Effective length of database: 2,808,413,156
Effective search space: 3058361926884
Effective search space used: 3058361926884
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)