Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012936
(1632 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092492.1| GTP-binding protein era homolog [Bos taurus]. 723 0.0
>ref|NP_001092492.1| GTP-binding protein era homolog [Bos taurus].
Length = 437
Score = 723 bits (1866), Expect = 0.0
Identities = 362/437 (82%), Positives = 394/437 (90%)
Frame = +2
Query: 26 MAAPGWQGIALLRTVLGVWTRGPEAARECAARLPSLLGSQRRCISCVASQAFSGPRLASA 205
MAA W+G LLRTV G+W GP+AARE RLPSLLG Q+RC+SCVA AFSGPRLASA
Sbjct: 1 MAASSWRGAVLLRTVSGLWQAGPDAAREWMTRLPSLLGFQQRCVSCVAGPAFSGPRLASA 60
Query: 206 SRPNGHSSALDCFLGLSQPDSSLTFHVPAVSMHRDEQDLLLVHRPDMPENPRVLRVVILG 385
SRPNG +SALDCFLGLSQPD+SL F VPAVS+HRDEQDLLLVHRPDMPENPRVLRVV+LG
Sbjct: 61 SRPNGQNSALDCFLGLSQPDNSLPFRVPAVSVHRDEQDLLLVHRPDMPENPRVLRVVLLG 120
Query: 386 APNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLISPAKQKRH 565
APNAGKSTLSN+LLGRKVFPVSKKVHTTRSQALGVITEKE QVILLDTPGLISPAKQKRH
Sbjct: 121 APNAGKSTLSNQLLGRKVFPVSKKVHTTRSQALGVITEKETQVILLDTPGLISPAKQKRH 180
Query: 566 HLEPSLLEDPWKSMESAXXXXXXXXXSDQWTRNQLSPQVLQCLTQFSQVPSILVMNKVDR 745
HLE SLLEDPWKSMESA SD+WTRNQLSPQVL+CLTQFSQVPSILVMNKVD
Sbjct: 181 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQVLRCLTQFSQVPSILVMNKVDC 240
Query: 746 LKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPGPAAKGPDTESVGDPQRTGWP 925
LKQKSVLLELTAALTEGVVNGKKL +QALRS+ D P PAA+GP+ + V DPQ+ GWP
Sbjct: 241 LKQKSVLLELTAALTEGVVNGKKLKTKQALRSRPDTHCPSPAAQGPNPQPVRDPQQMGWP 300
Query: 926 HFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIVREKLLEYL 1105
HFQEIFMLSALSQEDVK LKQYLLAQARPGPWEFHS VLTSQTP+EICAN++REKLLEYL
Sbjct: 301 HFQEIFMLSALSQEDVKTLKQYLLAQARPGPWEFHSEVLTSQTPEEICANMIREKLLEYL 360
Query: 1106 PQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIAQEVGQDLM 1285
P+EVPY VQQKT++W+EGPSG+LVIEQKLLV KESHM++LIGPKG+LI+QIAQEVG+DLM
Sbjct: 361 PEEVPYNVQQKTVVWDEGPSGELVIEQKLLVSKESHMKILIGPKGYLIAQIAQEVGRDLM 420
Query: 1286 DIFLCEVQLRLSVKLLK 1336
+IFLCEVQLRLSVKLLK
Sbjct: 421 NIFLCEVQLRLSVKLLK 437
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,889,052
Number of extensions: 2482205
Number of successful extensions: 11800
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11720
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 437
Effective length of database: 14,140,958
Effective search space: 6179598646
Effective search space used: 6179598646
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012936
(1632 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537749.2| PREDICTED: similar to Era G-protein-like 1 [Can... 697 0.0
>ref|XP_537749.2| PREDICTED: similar to Era G-protein-like 1 [Canis familiaris].
Length = 559
Score = 697 bits (1800), Expect = 0.0
Identities = 358/445 (80%), Positives = 385/445 (86%)
Frame = +2
Query: 2 FPQCLAAAMAAPGWQGIALLRTVLGVWTRGPEAARECAARLPSLLGSQRRCISCVASQAF 181
FP CLAAAMAA + LL TVLG+ GP+AARE ARL SL RRC+SC + AF
Sbjct: 115 FPACLAAAMAAASRRSALLLPTVLGIRRLGPDAAREWVARLSSLSDCPRRCVSCCSGAAF 174
Query: 182 SGPRLASASRPNGHSSALDCFLGLSQPDSSLTFHVPAVSMHRDEQDLLLVHRPDMPENPR 361
SGPRLASASR G SSALD FLGLSQ SLT H PAVSMHRDEQDLLLVHRPDMPENPR
Sbjct: 175 SGPRLASASRRYGQSSALDRFLGLSQHGGSLTSHPPAVSMHRDEQDLLLVHRPDMPENPR 234
Query: 362 VLRVVILGAPNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLI 541
VLRVV+LGAPNAGKSTLSN+LLGRKVFPVSKKVHTTR QALGVITE+EAQVILLDTPGLI
Sbjct: 235 VLRVVLLGAPNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEEEAQVILLDTPGLI 294
Query: 542 SPAKQKRHHLEPSLLEDPWKSMESAXXXXXXXXXSDQWTRNQLSPQVLQCLTQFSQVPSI 721
SPAKQKRHHLE SLLEDPWKSMESA SD+WTRNQLSPQVLQCLTQFSQVPSI
Sbjct: 295 SPAKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQVLQCLTQFSQVPSI 354
Query: 722 LVMNKVDRLKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPGPAAKGPDTESVG 901
LVMNKVD LKQKSVLLELTAALTEGVVNGKKL +RQAL Q D RP P AKGP+ +S+G
Sbjct: 355 LVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQALHLQSDTPRPSPTAKGPNIQSMG 414
Query: 902 DPQRTGWPHFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIV 1081
PQR GWPHF+EIFMLSALSQEDVK LKQYLLAQA PGPWE+HSGVLTSQTP+EICANI+
Sbjct: 415 GPQRIGWPHFREIFMLSALSQEDVKTLKQYLLAQALPGPWEYHSGVLTSQTPEEICANII 474
Query: 1082 REKLLEYLPQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIA 1261
REKLLE+LPQE+PY VQQKT++WEEGPSG+LVIEQKLLV KESH+R+LIGPKG LI+QIA
Sbjct: 475 REKLLEHLPQEMPYSVQQKTVLWEEGPSGELVIEQKLLVSKESHVRILIGPKGRLIAQIA 534
Query: 1262 QEVGQDLMDIFLCEVQLRLSVKLLK 1336
QE G DLMDIFLC+VQLRLSVKLL+
Sbjct: 535 QEAGHDLMDIFLCDVQLRLSVKLLQ 559
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,807,844
Number of extensions: 2538084
Number of successful extensions: 11728
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11659
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 436
Effective length of database: 15,274,216
Effective search space: 6659558176
Effective search space used: 6659558176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012936
(1632 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131840.2| PREDICTED: GTPase Era, mitochondrial-like [S... 847 0.0
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 53 4e-07
>ref|XP_003131840.2| PREDICTED: GTPase Era, mitochondrial-like [Sus scrofa].
Length = 437
Score = 847 bits (2188), Expect = 0.0
Identities = 428/437 (97%), Positives = 428/437 (97%)
Frame = +2
Query: 26 MAAPGWQGIALLRTVLGVWTRGPEAARECAARLPSLLGSQRRCISCVASQAFSGPRLASA 205
MAAPGWQGIALLRTVLGVWTRGPEAARECAARLPSLLGSQRRCISCVASQAFSGPRLASA
Sbjct: 1 MAAPGWQGIALLRTVLGVWTRGPEAARECAARLPSLLGSQRRCISCVASQAFSGPRLASA 60
Query: 206 SRPNGHSSALDCFLGLSQPDSSLTFHVPAVSMHRDEQDLLLVHRPDMPENPRVLRVVILG 385
SRPNGHSSALDCFLGLSQPDSSLTFHVPAVSMHRDEQDLLLVHRPDMPENPRVLRVVILG
Sbjct: 61 SRPNGHSSALDCFLGLSQPDSSLTFHVPAVSMHRDEQDLLLVHRPDMPENPRVLRVVILG 120
Query: 386 APNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLISPAKQKRH 565
APNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLISPAKQKRH
Sbjct: 121 APNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLISPAKQKRH 180
Query: 566 HLEPSLLEDPWKSMESAXXXXXXXXXSDQWTRNQLSPQVLQCLTQFSQVPSILVMNKVDR 745
HLEPSLLEDPWKSMESA SDQWTRNQLSPQVLQCLTQFSQVPSILVMNKVDR
Sbjct: 181 HLEPSLLEDPWKSMESADLVVVLVDVSDQWTRNQLSPQVLQCLTQFSQVPSILVMNKVDR 240
Query: 746 LKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPGPAAKGPDTESVGDPQRTGWP 925
LKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPGPAAKGPDTESVGDPQRTGWP
Sbjct: 241 LKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPGPAAKGPDTESVGDPQRTGWP 300
Query: 926 HFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIVREKLLEYL 1105
HFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIVREKLLEYL
Sbjct: 301 HFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIVREKLLEYL 360
Query: 1106 PQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIAQEVGQDLM 1285
PQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIAQEVGQDLM
Sbjct: 361 PQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIAQEVGQDLM 420
Query: 1286 DIFLCEVQLRLSVKLLK 1336
DIFLCEVQLRLSVKLLK
Sbjct: 421 DIFLCEVQLRLSVKLLK 437
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like
[Sus scrofa].
Length = 315
Score = 53.1 bits (126), Expect = 4e-07
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +2
Query: 365 LRVVILGAPNAGKSTLSNKLLGRKVFP--VSKKVHTTRSQALGVITEKEAQVILLDTPGL 538
LR+V++G AGKS N +LG+KVFP +S K T + G T KE +V+++DTPG+
Sbjct: 25 LRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEK-GKSTWKEREVVVVDTPGI 83
Query: 539 ISPAKQK 559
P Q+
Sbjct: 84 FDPEVQE 90
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,446,012
Number of extensions: 1608170
Number of successful extensions: 7589
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7539
Number of HSP's successfully gapped: 2
Length of query: 544
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 440
Effective length of database: 8,754,644
Effective search space: 3852043360
Effective search space used: 3852043360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012936
(1632 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071708.2| GTPase Era, mitochondrial [Mus musculus]. 634 0.0
>ref|NP_071708.2| GTPase Era, mitochondrial [Mus musculus].
Length = 437
Score = 634 bits (1635), Expect = 0.0
Identities = 325/437 (74%), Positives = 362/437 (82%)
Frame = +2
Query: 26 MAAPGWQGIALLRTVLGVWTRGPEAARECAARLPSLLGSQRRCISCVASQAFSGPRLASA 205
MAAP L+R +LG G A RE A LLG+Q RC+SCV FSGP LASA
Sbjct: 1 MAAPRRYCAGLVRALLGARQVGSHAGREWLAPPGCLLGNQARCVSCVVGSTFSGPLLASA 60
Query: 206 SRPNGHSSALDCFLGLSQPDSSLTFHVPAVSMHRDEQDLLLVHRPDMPENPRVLRVVILG 385
S G SALD LG SQPDSSL VPAVS+HRDEQ+LLLVH PDMPENPRVLRVV+LG
Sbjct: 61 SSRYGQDSALDRILGFSQPDSSLVPSVPAVSVHRDEQNLLLVHTPDMPENPRVLRVVLLG 120
Query: 386 APNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLISPAKQKRH 565
APNAGKSTLSN+LLGRKVFPVSKKVHTTR QALGVITEKE QVILLDTPG+ISP KQKRH
Sbjct: 121 APNAGKSTLSNQLLGRKVFPVSKKVHTTRCQALGVITEKETQVILLDTPGIISPVKQKRH 180
Query: 566 HLEPSLLEDPWKSMESAXXXXXXXXXSDQWTRNQLSPQVLQCLTQFSQVPSILVMNKVDR 745
HLE SLLEDPW SMESA SD+WTR++L+PQVLQCLT+FSQVPSILV+NKVD
Sbjct: 181 HLERSLLEDPWTSMESADLVVVLVDVSDKWTRSRLNPQVLQCLTKFSQVPSILVLNKVDC 240
Query: 746 LKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPGPAAKGPDTESVGDPQRTGWP 925
LKQKSVLLELTAALTEGVVNGKKL ++QALRS+ PGP +GP+ SV +PQR GWP
Sbjct: 241 LKQKSVLLELTAALTEGVVNGKKLNIKQALRSRSSTHCPGPETEGPNAHSVRNPQRIGWP 300
Query: 926 HFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIVREKLLEYL 1105
+FQEIFMLSAL+ +DV LKQYLL QA+PGPWEFHSGVLTSQTP+EICAN +REKLLEYL
Sbjct: 301 YFQEIFMLSALNNKDVNTLKQYLLTQAQPGPWEFHSGVLTSQTPEEICANKIREKLLEYL 360
Query: 1106 PQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIAQEVGQDLM 1285
P+EVPYGVQQKT++WEEGPSG+LVI+Q LLVPKESH+R+LIG KG LISQIAQEVG+DLM
Sbjct: 361 PEEVPYGVQQKTVIWEEGPSGELVIQQNLLVPKESHVRILIGQKGLLISQIAQEVGRDLM 420
Query: 1286 DIFLCEVQLRLSVKLLK 1336
DIF C+V +RLSVKLLK
Sbjct: 421 DIFHCDVLIRLSVKLLK 437
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,842,612
Number of extensions: 2013052
Number of successful extensions: 8852
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8818
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 438
Effective length of database: 12,433,743
Effective search space: 5445979434
Effective search space used: 5445979434
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012936
(1632 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005693.1| GTPase Era, mitochondrial [Homo sapiens]. 674 0.0
>ref|NP_005693.1| GTPase Era, mitochondrial [Homo sapiens].
Length = 437
Score = 674 bits (1739), Expect = 0.0
Identities = 337/437 (77%), Positives = 375/437 (85%)
Frame = +2
Query: 26 MAAPGWQGIALLRTVLGVWTRGPEAARECAARLPSLLGSQRRCISCVASQAFSGPRLASA 205
MAAP W+G L+++VL VW GP ARE SLLG QRRC+SCVA AFSGPRLASA
Sbjct: 1 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA 60
Query: 206 SRPNGHSSALDCFLGLSQPDSSLTFHVPAVSMHRDEQDLLLVHRPDMPENPRVLRVVILG 385
SR NG SALD FLG SQPDSS+T VPAVSM+RDEQD+LLVH PDMPEN RVLRVV+LG
Sbjct: 61 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG 120
Query: 386 APNAGKSTLSNKLLGRKVFPVSKKVHTTRSQALGVITEKEAQVILLDTPGLISPAKQKRH 565
APNAGKSTLSN+LLGRKVFPVS+KVHTTR QALGVITEKE QVILLDTPG+ISP KQKRH
Sbjct: 121 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH 180
Query: 566 HLEPSLLEDPWKSMESAXXXXXXXXXSDQWTRNQLSPQVLQCLTQFSQVPSILVMNKVDR 745
HLE SLLEDPWKSMESA SD+WTRNQLSPQ+L+CLT++SQ+PS+LVMNKVD
Sbjct: 181 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC 240
Query: 746 LKQKSVLLELTAALTEGVVNGKKLTVRQALRSQRDARRPGPAAKGPDTESVGDPQRTGWP 925
LKQKSVLLELTAALTEGVVNGKKL +RQA S P PA K P+T+SVG+PQR GWP
Sbjct: 241 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP 300
Query: 926 HFQEIFMLSALSQEDVKILKQYLLAQARPGPWEFHSGVLTSQTPQEICANIVREKLLEYL 1105
HF+EIFMLSALSQEDVK LKQYLL QA+PGPWE+HS VLTSQTP+EICANI+REKLLE+L
Sbjct: 301 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL 360
Query: 1106 PQEVPYGVQQKTMMWEEGPSGQLVIEQKLLVPKESHMRLLIGPKGHLISQIAQEVGQDLM 1285
PQEVPY VQQKT +WEEGP G+LVI+QKLLVPKES+++LLIGPKGH+ISQIAQE G DLM
Sbjct: 361 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM 420
Query: 1286 DIFLCEVQLRLSVKLLK 1336
DIFLC+V +RLSVKLLK
Sbjct: 421 DIFLCDVDIRLSVKLLK 437
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 76,152,012
Number of extensions: 2465371
Number of successful extensions: 10965
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10910
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 437
Effective length of database: 14,770,016
Effective search space: 6454496992
Effective search space used: 6454496992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012936
(1632 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 803 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 803 bits (405), Expect = 0.0
Identities = 415/417 (99%), Gaps = 1/417 (0%)
Strand = Plus / Minus
Query: 1216 gaggctcctgatcggtccaaaggggcacttgatctcccagattgcacaggaggtgggcca 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47177906 gaggctcctgatcggtccaaaggggcacttgatctcccagattgcacaggaggtgggcca 47177847
Query: 1276 agacctcatggacatcttcctctgtgaggttcagctccgcctgtctgtgaaactcctcaa 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47177846 agacctcatggacatcttcctctgtgaggttcagctccgcctgtctgtgaaactcctcaa 47177787
Query: 1336 gtgaccaccgtctgctgtctttcctgaagtgtccctgcccaagatgctggcgggagccgc 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47177786 gtgaccaccgtctgctgtctttcctgaagtgtccctgcccaagatgctggcgggagccgc 47177727
Query: 1396 ggaccagaccagaactgcccccgacccgggcccacagggtttggggagggtcttggtcgc 1455
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 47177726 ggaccagaccagaactgcccccgacccgggcccacagggtctggggagggtcttggtcgc 47177667
Query: 1456 tggctgactggctaactgctggcctggcctggccgagtccgcacagcacctgcccagctg 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47177666 tggctgactggctaactgctggcctggcctggccgagtccgcacagcacctgcccagctg 47177607
Query: 1516 tgctgcctgttgggggaaggaacccaccttagctcggttgccaggtggttccactccctg 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47177606 tgctgcctgttgggggaaggaacccaccttagctcggttgccaggtggttccactccctg 47177547
Query: 1576 gggctagagctgctaaggtcttagaagctggccctttggtgtggggggcaggagcgc 1632
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 47177546 gggctagagctgctaaggtcttagaagctggccctttggtgtg-ggggcaggagcgc 47177491
Score = 611 bits (308), Expect = e-172
Identities = 308/308 (100%)
Strand = Plus / Minus
Query: 1 gttcccgcagtgccttgcggctgccatggctgcccccggctggcaagggattgcgctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47183011 gttcccgcagtgccttgcggctgccatggctgcccccggctggcaagggattgcgctcct 47182952
Query: 61 tcggaccgtcttaggggtctggacgcggggcccagaggctgcgagagagtgcgcggcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47182951 tcggaccgtcttaggggtctggacgcggggcccagaggctgcgagagagtgcgcggcccg 47182892
Query: 121 gctcccctcgctcttgggcagtcagcggaggtgcatttcctgtgtcgcgagccaggcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47182891 gctcccctcgctcttgggcagtcagcggaggtgcatttcctgtgtcgcgagccaggcttt 47182832
Query: 181 ctctggtccccgcctagcctcggcttctcgccctaatggccacagctcagccttggactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47182831 ctctggtccccgcctagcctcggcttctcgccctaatggccacagctcagccttggactg 47182772
Query: 241 cttcctcggactctctcagcccgatagttcgttgacttttcacgtccccgccgtgtccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47182771 cttcctcggactctctcagcccgatagttcgttgacttttcacgtccccgccgtgtccat 47182712
Query: 301 gcacagag 308
||||||||
Sbjct: 47182711 gcacagag 47182704
Score = 498 bits (251), Expect = e-138
Identities = 251/251 (100%)
Strand = Plus / Minus
Query: 735 aggtggatcgcctgaagcagaagtcagttctcctggagctcacggcagccctcaccgaag 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178748 aggtggatcgcctgaagcagaagtcagttctcctggagctcacggcagccctcaccgaag 47178689
Query: 795 gcgtggtcaacggcaagaagctcacggtgaggcaggccttgcgctcacagcgggatgctc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178688 gcgtggtcaacggcaagaagctcacggtgaggcaggccttgcgctcacagcgggatgctc 47178629
Query: 855 gtcgccccggcccagctgctaagggcccagacacagagtctgtgggagaccctcagagga 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178628 gtcgccccggcccagctgctaagggcccagacacagagtctgtgggagaccctcagagga 47178569
Query: 915 ctggctggccccacttccaggagatcttcatgttgtccgctctaagccaggaggatgtga 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178568 ctggctggccccacttccaggagatcttcatgttgtccgctctaagccaggaggatgtga 47178509
Query: 975 aaatactaaag 985
|||||||||||
Sbjct: 47178508 aaatactaaag 47178498
Score = 301 bits (152), Expect = 6e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 984 agcaatacctcctggcacaggcccggcccgggccctgggagttccacagtggagttctca 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178343 agcaatacctcctggcacaggcccggcccgggccctgggagttccacagtggagttctca 47178284
Query: 1044 ccagccagacgcctcaggagatctgcgccaacattgtccgagagaagctgctagagtacc 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178283 ccagccagacgcctcaggagatctgcgccaacattgtccgagagaagctgctagagtacc 47178224
Query: 1104 tgccccaggaggtgccctatggagtgcagcag 1135
||||||||||||||||||||||||||||||||
Sbjct: 47178223 tgccccaggaggtgccctatggagtgcagcag 47178192
Score = 262 bits (132), Expect = 5e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 307 agatgagcaggatctcctcttggtccaccgccctgacatgcctgagaacccccgggtcct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47180377 agatgagcaggatctcctcttggtccaccgccctgacatgcctgagaacccccgggtcct 47180318
Query: 367 acgagtagtcatcctgggtgccccaaatgcagggaagtcaacactctccaacaagctgct 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47180317 acgagtagtcatcctgggtgccccaaatgcagggaagtcaacactctccaacaagctgct 47180258
Query: 427 gggccgaaaagt 438
||||||||||||
Sbjct: 47180257 gggccgaaaagt 47180246
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 623 gttgtggttcttgtggatgtctcggaccagtggactcggaaccagctcagcccgcaggtg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178945 gttgtggttcttgtggatgtctcggaccagtggactcggaaccagctcagcccgcaggtg 47178886
Query: 683 ctccagtgcttgacccagttctcccaagtgcccagcatccttgtcatgaacaaggtg 739
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178885 ctccagtgcttgacccagttctcccaagtgcccagcatccttgtcatgaacaaggtg 47178829
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1132 gcagaagacgatgatgtgggaggaagggccaagcgggcagctggtgattgaacaaaagct 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47178075 gcagaagacgatgatgtgggaggaagggccaagcgggcagctggtgattgaacaaaagct 47178016
Query: 1192 tctggtgcccaaggaatctcatatg 1216
|||||||||||||||||||||||||
Sbjct: 47178015 tctggtgcccaaggaatctcatatg 47177991
Score = 155 bits (78), Expect = 9e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 437 gtgttccctgtctccaagaaggtgcacaccactcgcagccaagctctgggggtcatcaca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47180133 gtgttccctgtctccaagaaggtgcacaccactcgcagccaagctctgggggtcatcaca 47180074
Query: 497 gagaaagaggcccaggtg 514
||||||||||||||||||
Sbjct: 47180073 gagaaagaggcccaggtg 47180056
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 560 aggcatcatttggagccctctttgttggaagatccgtggaagagcatggaatctgctgat 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47179171 aggcatcatttggagccctctttgttggaagatccgtggaagagcatggaatctgctgat 47179112
Query: 620 ctgg 623
||||
Sbjct: 47179111 ctgg 47179108
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 514 gattctacttgatactcctggcctcatcagccctgctaaacagaaaagg 562
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47179648 gattctacttgatactcctggcctcatcagccctgctaaacagaaaagg 47179600
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,891,568
Number of extensions: 230
Number of successful extensions: 230
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 10
Length of query: 1632
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1610
Effective length of database: 2,808,408,574
Effective search space: 4521537804140
Effective search space used: 4521537804140
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)