Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012944
(1238 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073085.1| protein-L-isoaspartate(D-aspartate) O-methyl... 455 e-128
Alignment gi|NP_001074995.1| protein-L-isoaspartate O-methyltransferase d... 63 6e-10
Alignment gi|NP_001019650.1| protein-L-isoaspartate O-methyltransferase d... 55 2e-07
Alignment gi|XP_002701130.1| PREDICTED: protein-L-isoaspartate O-methyltr... 55 2e-07
>ref|NP_001073085.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Bos taurus].
Length = 227
Score = 455 bits (1171), Expect = e-128
Identities = 224/227 (98%), Positives = 226/227 (99%)
Frame = +3
Query: 354 MAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATIS 533
MAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATIS
Sbjct: 1 MAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATIS 60
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 713
APHMHAYALELLFDQL+EGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI
Sbjct: 61 APHMHAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 120
Query: 714 NNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI 893
NNVRKDDPMLLS+GRVQLVVGDGRMGYA EAPYDAIHVGAAAPVVPQALIDQLKPGGRLI
Sbjct: 121 NNVRKDDPMLLSTGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI 180
Query: 894 LPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
LPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 181 LPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 227
>ref|NP_001074995.1| protein-L-isoaspartate O-methyltransferase domain-containing protein
1 [Bos taurus].
Length = 356
Score = 62.8 bits (151), Expect = 6e-10
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 12/229 (5%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA----KCNPYMDSPQSIGFQATIS 533
S G + +LI NL++ I+T++V + A DR Y + N Y D G +S
Sbjct: 6 SAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGI-------DHIK 692
AP +++ +E L +L G L++GSG+G L+ ++GP G GI ++ K
Sbjct: 65 APCIYSEVMEAL--KLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAK 122
Query: 693 ELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALID-Q 869
E ++ I N D VVG+ ++ YD I+ GA + +
Sbjct: 123 EKLESFIKNSDSFDKFEFC--EPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL 180
Query: 870 LKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEK 1016
LK GG L++P+ L Q + + + K ++ V + PL K
Sbjct: 181 LKVGGILVMPI-----EDQLTQIMRTGQNTWESKNILAVSFAPLVQPSK 224
>ref|NP_001019650.1| protein-L-isoaspartate O-methyltransferase domain-containing protein
2 [Bos taurus].
Length = 361
Score = 54.7 bits (130), Expect = 2e-07
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHY----AKCNPYMDSPQSIGFQATIS 533
S G + ELI NL++ I+++ V + A DR+ Y K N Y D G +S
Sbjct: 6 SAGEDNDELIDNLKEAQYIRSELVEQAFRAIDRADYYLEEFKENAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 713
AP +++ +E L L G L++GSG+G L++ ++GP G++H EL D
Sbjct: 65 APCIYSEVMEAL--DLQPGLSFLNLGSGTGYLSSMVGLILGP----FGVNHGVELHSDVT 118
Query: 714 NNVRKDDPMLLSSG---------RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALID 866
++ + + V G+ + + YD ++ GA + +
Sbjct: 119 EYAKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMK 178
Query: 867 Q-LKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPL 1001
LK GG L++P+ + L + + + + K ++ V + PL
Sbjct: 179 SLLKVGGILVMPL-----EEKLTKITRTGPSAWETKKILAVSFAPL 219
>ref|XP_002701130.1| PREDICTED: protein-L-isoaspartate O-methyltransferase
domain-containing protein 2-like [Bos taurus].
Length = 361
Score = 54.7 bits (130), Expect = 2e-07
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHY----AKCNPYMDSPQSIGFQATIS 533
S G + ELI NL++ I+++ V + A DR+ Y K N Y D G +S
Sbjct: 6 SAGEDNDELIDNLKEAQYIRSELVEQAFRAIDRADYYLEEFKENAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 713
AP +++ +E L L G L++GSG+G L++ ++GP G++H EL D
Sbjct: 65 APCIYSEVMEAL--DLQPGLSFLNLGSGTGYLSSMVGLILGP----FGVNHGVELHSDVT 118
Query: 714 NNVRKDDPMLLSSG---------RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALID 866
++ + + V G+ + + YD ++ GA + +
Sbjct: 119 EYAKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMK 178
Query: 867 Q-LKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPL 1001
LK GG L++P+ + L + + + + K ++ V + PL
Sbjct: 179 SLLKVGGILVMPL-----EEKLTKITRTGPSAWETKKILAVSFAPL 219
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,256,074
Number of extensions: 1069229
Number of successful extensions: 4935
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4905
Number of HSP's successfully gapped: 4
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012944
(1238 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861806.1| PREDICTED: similar to Protein-L-isoaspartate(D-... 518 e-147
Alignment gi|XP_850565.1| PREDICTED: similar to Protein-L-isoaspartate(D-... 518 e-147
Alignment gi|XP_861777.1| PREDICTED: similar to Protein-L-isoaspartate(D-... 512 e-145
Alignment gi|XP_861918.1| PREDICTED: similar to Protein-L-isoaspartate(D-... 431 e-121
Alignment gi|XP_861832.1| PREDICTED: similar to Protein-L-isoaspartate(D-... 425 e-119
Alignment gi|XP_533447.2| PREDICTED: similar to Protein-L-isoaspartate(D-... 348 6e-96
Alignment gi|XP_861862.1| PREDICTED: similar to Protein-L-isoaspartate(D-... 342 4e-94
Alignment gi|XP_861888.1| PREDICTED: similar to Protein-L-isoaspartate(D-... 258 6e-69
Alignment gi|XP_535066.1| PREDICTED: similar to R119.5 isoform 1 [Canis f... 63 7e-10
Alignment gi|XP_848620.1| PREDICTED: similar to R119.5 isoform 3 [Canis f... 63 7e-10
>ref|XP_861806.1| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 8 [Canis familiaris].
Length = 285
Score = 518 bits (1334), Expect = e-147
Identities = 262/285 (91%), Positives = 263/285 (92%)
Frame = +3
Query: 180 MPGARXXXXXXXXXXXXXXXXXXXXXVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 359
MPGAR VTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA
Sbjct: 1 MPGARSGGTGGDSSHSGDSSGDASGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 60
Query: 360 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 539
WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
Sbjct: 61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120
Query: 540 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 719
HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG SGKVIGIDHIKELVDDSINN
Sbjct: 121 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIGIDHIKELVDDSINN 180
Query: 720 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 899
VRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
Sbjct: 181 VRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 240
Query: 900 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 241 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 285
>ref|XP_850565.1| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 6 [Canis familiaris].
Length = 285
Score = 518 bits (1334), Expect = e-147
Identities = 262/285 (91%), Positives = 263/285 (92%)
Frame = +3
Query: 180 MPGARXXXXXXXXXXXXXXXXXXXXXVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 359
MPGAR VTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA
Sbjct: 1 MPGARSGGTGGDSSHSGDSSGDASGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 60
Query: 360 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 539
WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
Sbjct: 61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120
Query: 540 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 719
HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG SGKVIGIDHIKELVDDSINN
Sbjct: 121 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIGIDHIKELVDDSINN 180
Query: 720 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 899
VRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
Sbjct: 181 VRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 240
Query: 900 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 241 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 285
>ref|XP_861777.1| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 7 [Canis familiaris].
Length = 286
Score = 512 bits (1318), Expect = e-145
Identities = 260/283 (91%), Positives = 261/283 (92%)
Frame = +3
Query: 180 MPGARXXXXXXXXXXXXXXXXXXXXXVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 359
MPGAR VTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA
Sbjct: 1 MPGARSGGTGGDSSHSGDSSGDASGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 60
Query: 360 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 539
WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
Sbjct: 61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120
Query: 540 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 719
HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG SGKVIGIDHIKELVDDSINN
Sbjct: 121 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIGIDHIKELVDDSINN 180
Query: 720 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 899
VRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
Sbjct: 181 VRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 240
Query: 900 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR 1028
VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR
Sbjct: 241 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR 283
>ref|XP_861918.1| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 12 [Canis familiaris].
Length = 250
Score = 431 bits (1109), Expect = e-121
Identities = 227/285 (79%), Positives = 228/285 (80%)
Frame = +3
Query: 180 MPGARXXXXXXXXXXXXXXXXXXXXXVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 359
MPGAR VTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA
Sbjct: 1 MPGARSGGTGGDSSHSGDSSGDASGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 60
Query: 360 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 539
WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
Sbjct: 61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120
Query: 540 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 719
HM VG SGKVIGIDHIKELVDDSINN
Sbjct: 121 HM-----------------------------------VGSSGKVIGIDHIKELVDDSINN 145
Query: 720 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 899
VRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
Sbjct: 146 VRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 205
Query: 900 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 206 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 250
>ref|XP_861832.1| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 9 [Canis familiaris].
Length = 251
Score = 425 bits (1093), Expect = e-119
Identities = 225/283 (79%), Positives = 226/283 (79%)
Frame = +3
Query: 180 MPGARXXXXXXXXXXXXXXXXXXXXXVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 359
MPGAR VTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA
Sbjct: 1 MPGARSGGTGGDSSHSGDSSGDASGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 60
Query: 360 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 539
WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
Sbjct: 61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120
Query: 540 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 719
HM VG SGKVIGIDHIKELVDDSINN
Sbjct: 121 HM-----------------------------------VGSSGKVIGIDHIKELVDDSINN 145
Query: 720 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 899
VRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
Sbjct: 146 VRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 205
Query: 900 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR 1028
VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR
Sbjct: 206 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR 248
>ref|XP_533447.2| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 5 [Canis familiaris].
Length = 205
Score = 348 bits (893), Expect = 6e-96
Identities = 173/179 (96%), Positives = 174/179 (97%)
Frame = +3
Query: 498 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIG 677
S GFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG SGKVIG
Sbjct: 27 SDAEAGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIG 86
Query: 678 IDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA 857
IDHIKELVDDSINNVRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA
Sbjct: 87 IDHIKELVDDSINNVRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA 146
Query: 858 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 147 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 205
>ref|XP_861862.1| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 10 [Canis familiaris].
Length = 206
Score = 342 bits (877), Expect = 4e-94
Identities = 171/177 (96%), Positives = 172/177 (97%)
Frame = +3
Query: 498 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIG 677
S GFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG SGKVIG
Sbjct: 27 SDAEAGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGSSGKVIG 86
Query: 678 IDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA 857
IDHIKELVDDSINNVRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA
Sbjct: 87 IDHIKELVDDSINNVRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA 146
Query: 858 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR 1028
LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR
Sbjct: 147 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSR 203
>ref|XP_861888.1| PREDICTED: similar to Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (Protein-beta-aspartate
methyltransferase) (PIMT) (Protein
L-isoaspartyl/D-aspartyl methyltransferase)
(L-isoaspartyl protein carboxyl methyltransferase)
isoform 11 [Canis familiaris].
Length = 129
Score = 258 bits (660), Expect = 6e-69
Identities = 127/129 (98%), Positives = 128/129 (99%)
Frame = +3
Query: 648 MVGPSGKVIGIDHIKELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 827
MVG SGKVIGIDHIKELVDDSINNVRKDDP+LLSSGRVQLVVGDGRMGYAEEAPYDAIHV
Sbjct: 1 MVGSSGKVIGIDHIKELVDDSINNVRKDDPVLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 60
Query: 828 GAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTD 1007
GAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTD
Sbjct: 61 GAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTD 120
Query: 1008 KEKQWSRWK 1034
KEKQWSRWK
Sbjct: 121 KEKQWSRWK 129
>ref|XP_535066.1| PREDICTED: similar to R119.5 isoform 1 [Canis familiaris].
Length = 356
Score = 62.8 bits (151), Expect = 7e-10
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 12/229 (5%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA----KCNPYMDSPQSIGFQATIS 533
S G + +LI NL++ I+T++V + A DR Y + N Y D G +S
Sbjct: 6 SAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGI-------DHIK 692
AP +++ +E L +L G L++GSG+G L+ ++GP G GI ++ K
Sbjct: 65 APCIYSEVMEAL--KLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAK 122
Query: 693 ELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALID-Q 869
E ++ I N D VVG+ ++ YD I+ GA + +
Sbjct: 123 EKLESFIKNSDSFDKFEFC--EPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL 180
Query: 870 LKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEK 1016
LK GG L++P+ L Q + + + K ++ V + PL K
Sbjct: 181 LKVGGILVMPI-----EDQLTQIMRTGQNTWESKNILAVSFAPLVQPSK 224
>ref|XP_848620.1| PREDICTED: similar to R119.5 isoform 3 [Canis familiaris].
Length = 356
Score = 62.8 bits (151), Expect = 7e-10
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 12/229 (5%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA----KCNPYMDSPQSIGFQATIS 533
S G + +LI NL++ I+T++V + A DR Y + N Y D G +S
Sbjct: 6 SAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGI-------DHIK 692
AP +++ +E L +L G L++GSG+G L+ ++GP G GI ++ K
Sbjct: 65 APCIYSEVMEAL--KLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAK 122
Query: 693 ELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALID-Q 869
E ++ I N D VVG+ ++ YD I+ GA + +
Sbjct: 123 EKLESFIKNSDSFDKFEFC--EPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL 180
Query: 870 LKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEK 1016
LK GG L++P+ L Q + + + K ++ V + PL K
Sbjct: 181 LKVGGILVMPI-----EDQLTQIMRTGQNTWESKNILAVSFAPLVQPSK 224
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,059,638
Number of extensions: 1097468
Number of successful extensions: 5334
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5318
Number of HSP's successfully gapped: 16
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012944
(1238 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182709.1| protein-L-isoaspartate(D-aspartate) O-methyl... 461 e-130
>ref|NP_001182709.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Sus scrofa].
Length = 227
Score = 461 bits (1187), Expect = e-130
Identities = 227/227 (100%), Positives = 227/227 (100%)
Frame = +3
Query: 354 MAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATIS 533
MAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATIS
Sbjct: 1 MAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATIS 60
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 713
APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI
Sbjct: 61 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 120
Query: 714 NNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI 893
NNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI
Sbjct: 121 NNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI 180
Query: 894 LPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
LPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 181 LPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,842,468
Number of extensions: 685373
Number of successful extensions: 3319
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3311
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012944
(1238 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032812.2| protein-L-isoaspartate(D-aspartate) O-methyltra... 509 e-144
Alignment gi|NP_898849.1| protein-L-isoaspartate O-methyltransferase doma... 63 5e-10
Alignment gi|NP_705822.1| protein-L-isoaspartate O-methyltransferase doma... 58 2e-08
>ref|NP_032812.2| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Mus
musculus].
Length = 285
Score = 509 bits (1310), Expect = e-144
Identities = 258/285 (90%), Positives = 260/285 (91%)
Frame = +3
Query: 180 MPGARXXXXXXXXXXXXXXXXXXXXXVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 359
MPGAR VTVWEVVSLLGKLLGTVAALKVVLYLLRVC AMA
Sbjct: 1 MPGARIGGSGSDGSNSGRSSGDTSGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCFAMA 60
Query: 360 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 539
WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAK NPYMDSPQSIGFQATISAP
Sbjct: 61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNPYMDSPQSIGFQATISAP 120
Query: 540 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 719
HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG SGKVIGIDHIKELVDDSI N
Sbjct: 121 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITN 180
Query: 720 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 899
V+KDDPMLLSSGRV+LVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
Sbjct: 181 VKKDDPMLLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 240
Query: 900 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 241 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 285
>ref|NP_898849.1| protein-L-isoaspartate O-methyltransferase domain-containing protein
1 [Mus musculus].
Length = 357
Score = 62.8 bits (151), Expect = 5e-10
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 12/229 (5%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA----KCNPYMDSPQSIGFQATIS 533
S G + +LI NL++ I+T++V + A DR Y + N Y D G +S
Sbjct: 6 SAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGI-------DHIK 692
AP +++ +E L +L G L++GSG+G L+ ++GP G GI ++ K
Sbjct: 65 APCIYSEVMEAL--KLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAK 122
Query: 693 ELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALID-Q 869
E ++ I N D VVG+ ++ YD I+ GA + +
Sbjct: 123 EKLESFIKNSDSFDKFEFC--EPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL 180
Query: 870 LKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEK 1016
LK GG L++P+ L Q + + + K ++ V + PL K
Sbjct: 181 LKVGGILVMPI-----EDQLTQIMRTGQNTWESKNILAVSFAPLVQPSK 224
>ref|NP_705822.1| protein-L-isoaspartate O-methyltransferase domain-containing protein
2 [Mus musculus].
Length = 359
Score = 57.8 bits (138), Expect = 2e-08
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 14/226 (6%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHY----AKCNPYMDSPQSIGFQATIS 533
S G + ELI NL++ I+TD V + A DR+ Y K N Y D G +S
Sbjct: 6 SAGEDNDELIDNLKEAQYIRTDLVEQAFRAIDRADYYLEEFKENAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 713
AP +++ +E L L G L++GSG+G L++ ++GP G++H EL D
Sbjct: 65 APCIYSEVMEAL--DLQPGLSFLNLGSGTGYLSSMVGLILGP----FGVNHGVELHSDVT 118
Query: 714 NNVRKDDPMLLSSG---------RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALI- 863
++ + + + V G+ + YD ++ GA + +
Sbjct: 119 EYAKQKLDVFIRTSDSFDKFDFCEPSFVTGNCLEIAPDCCQYDRVYCGAGVQKEHEEYMK 178
Query: 864 DQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPL 1001
+ LK GG L++P+ + L + + + + K ++ V + PL
Sbjct: 179 NLLKVGGILVMPL-----EEKLTKITRTGPSAWETKKILAVSFAPL 219
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,547,310
Number of extensions: 902445
Number of successful extensions: 3770
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3750
Number of HSP's successfully gapped: 3
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012944
(1238 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005380.2| protein-L-isoaspartate(D-aspartate) O-methyltra... 513 e-145
Alignment gi|NP_443169.2| protein-L-isoaspartate O-methyltransferase doma... 63 6e-10
Alignment gi|NP_060727.2| protein-L-isoaspartate O-methyltransferase doma... 58 2e-08
Alignment gi|NP_001098395.1| protein-L-isoaspartate O-methyltransferase d... 55 1e-07
>ref|NP_005380.2| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Homo
sapiens].
Length = 285
Score = 513 bits (1321), Expect = e-145
Identities = 258/285 (90%), Positives = 261/285 (91%)
Frame = +3
Query: 180 MPGARXXXXXXXXXXXXXXXXXXXXXVTVWEVVSLLGKLLGTVAALKVVLYLLRVCLAMA 359
MPGAR VTVWEVVSLLGKLLGTV ALKVVLYLLRVCLAMA
Sbjct: 1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 60
Query: 360 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 539
WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP
Sbjct: 61 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 120
Query: 540 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINN 719
HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVG +GKVIGIDHIKELVDDS+NN
Sbjct: 121 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 180
Query: 720 VRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 899
VRKDDP LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP
Sbjct: 181 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 240
Query: 900 VGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRWK 1034
VGPAGGNQMLEQYDKLQDGS+KMKPLMGVIYVPLTDKEKQWSRWK
Sbjct: 241 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 285
>ref|NP_443169.2| protein-L-isoaspartate O-methyltransferase domain-containing protein
1 [Homo sapiens].
Length = 357
Score = 62.8 bits (151), Expect = 6e-10
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 12/229 (5%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYA----KCNPYMDSPQSIGFQATIS 533
S G + +LI NL++ I+T++V + A DR Y + N Y D G +S
Sbjct: 6 SAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGI-------DHIK 692
AP +++ +E L +L G L++GSG+G L+ ++GP G GI ++ K
Sbjct: 65 APCIYSEVMEAL--KLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEYAK 122
Query: 693 ELVDDSINNVRKDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALID-Q 869
E ++ I N D VVG+ ++ YD I+ GA + +
Sbjct: 123 EKLESFIKNSDSFDKFEFC--EPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL 180
Query: 870 LKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEK 1016
LK GG L++P+ L Q + + + K ++ V + PL K
Sbjct: 181 LKVGGILVMPI-----EDQLTQIMRTGQNTWESKNILAVSFAPLVQPSK 224
>ref|NP_060727.2| protein-L-isoaspartate O-methyltransferase domain-containing protein
2 isoform 1 [Homo sapiens].
Length = 361
Score = 58.2 bits (139), Expect = 2e-08
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 14/226 (6%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHY----AKCNPYMDSPQSIGFQATIS 533
S G + ELI NL++ I+T+ V + A DR+ Y K N Y D G +S
Sbjct: 6 SAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 713
AP +++ +E L L G L++GSG+G L++ ++GP G++H EL D I
Sbjct: 65 APCIYSEVMEAL--DLQPGLSFLNLGSGTGYLSSMVGLILGP----FGVNHGVELHSDVI 118
Query: 714 NNVRKDDPMLLSSG---------RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALI- 863
++ + + V G+ + + YD ++ GA + +
Sbjct: 119 EYAKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMK 178
Query: 864 DQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPL 1001
+ LK GG L++P+ + L + + + + K ++ V + PL
Sbjct: 179 NLLKVGGILVMPL-----EEKLTKITRTGPSAWETKKILAVSFAPL 219
>ref|NP_001098395.1| protein-L-isoaspartate O-methyltransferase domain-containing
protein 2 isoform 2 [Homo sapiens].
Length = 334
Score = 55.5 bits (132), Expect = 1e-07
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Frame = +3
Query: 366 SGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHY----AKCNPYMDSPQSIGFQATIS 533
S G + ELI NL++ I+T+ V + A DR+ Y K N Y D G +S
Sbjct: 6 SAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHG-NIHLS 64
Query: 534 APHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSI 713
AP +++ +E L L G L++GSG+G L++ ++GP G++H EL D I
Sbjct: 65 APCIYSEVMEAL--DLQPGLSFLNLGSGTGYLSSMVGLILGP----FGVNHGVELHSDVI 118
Query: 714 NNVRKDDPMLLSSG---------RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALI- 863
++ + + V G+ + + YD ++ GA + +
Sbjct: 119 EYAKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMK 178
Query: 864 DQLKPGGRLILPV 902
+ LK GG L++P+
Sbjct: 179 NLLKVGGILVMPL 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,302,069
Number of extensions: 1080156
Number of successful extensions: 4641
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4626
Number of HSP's successfully gapped: 4
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012944
(1238 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 416 e-113
>Sscrofa_Chr01
|| Length = 315321322
Score = 416 bits (210), Expect = e-113
Identities = 217/218 (99%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 858 ctaatagaccagttaaagcctggtggaagattgatattgccagttggtcctgcaggtgga 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18462002 ctaatagaccagttaaagcctggtggaagattgatattgccagttggtcctgcaggtgga 18462061
Query: 918 aatcagatgttggagcagtatgacaagctgcaagatggcagtgtcaaaatgaaacctctg 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18462062 aatcagatgttggagcagtatgacaagctgcaagatggcagtgtcaaaatgaaacctctg 18462121
Query: 978 atgggagtgatatacgtgcctttaacagataaagaaaagcagtggtccaggtggaagtga 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18462122 atgggagtgatatacgtgcctttaacagataaagaaaagcagtggtccaggtggaagtga 18462181
Query: 1038 ttttatcttctgctctttcttctt-cacacatgcaagg 1074
|||||||||||||||||||||||| |||||||||||||
Sbjct: 18462182 ttttatcttctgctctttcttcttccacacatgcaagg 18462219
Score = 270 bits (136), Expect = 2e-69
Identities = 159/167 (95%)
Strand = Plus / Plus
Query: 1072 agggacgaactgtaaaagcaacatcagcttgaccagtatatactattacagtggattgct 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18471963 agggacgaactgtaaaagcaacatcagcttgaccagtatatactattacagtggattgct 18472022
Query: 1132 catctcagtccctcaagcttttttgaaatcgacagcatcacagcttgttttggactttcn 1191
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18472023 catctcagtcctcaaagctttttgaaaatcgacagcatcacagcttgttttggactttct 18472082
Query: 1192 tacactattttcagcatgaaaatgtatggttttgtggggattctaat 1238
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18472083 tacactattttcagcatgaaaatgtatggttttgtgggatttctaat 18472129
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 650 ggttggacctagtggaaaagtcataggaattgaccatattaaagaactagtagatgactc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18455230 ggttggacctagtggaaaagtcataggaattgaccatattaaagaactagtagatgactc 18455289
Query: 710 aataaataatgtcagaaaggatgatccaatgcttttgtcttcagggagagtgcagctggt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18455290 aataaataatgtcagaaaggatgatccaatgcttttgtcttcagggagagtgcagctggt 18455349
Query: 770 tg 771
||
Sbjct: 18455350 tg 18455351
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 545 gcatgcgtatgcgctagaacttctatttgatcaattgcatgaaggagctaaagctctcga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18451547 gcatgcgtatgcgctagaacttctatttgatcaattgcatgaaggagctaaagctctcga 18451606
Query: 605 tgtaggatctggaagtggaatccttactgcatgttttgcacgtatggt 652
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18451607 tgtaggatctggaagtggaatccttactgcatgttttgcacgtatggt 18451654
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 409 aaaatggaatcatcaaaacagataaagtatttgaagtaatgctggccacagaccgctccc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18440912 aaaatggaatcatcaaaacagataaagtatttgaagtaatgctggccacagaccgctccc 18440971
Query: 469 actatgcaaaatgtaacccttacatggactcaccacaatcaatagg 514
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18440972 actatgcaaaatgtaacccttacatggactcaccacaatcaatagg 18441017
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 311 cgcgctgaaggtggttctgtacctgctccgggtgtgcctagcgatggcctggaaatccgg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18571709 cgcgctgaaggtggttctgtacctgctccgggtgtgcctagcgatggcctggaaatccgg 18571650
Query: 371 cggcgccagccactcggagctaatccacaacctccgca 408
||||||||||||||||||||||||||||||||||||||
Sbjct: 18571649 cggcgccagccactcggagctaatccacaacctccgca 18571612
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 771 gtgggggatggaagaatgggatatgccgaagaagccccttatgatgctattcatgtagga 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18457219 gtgggggatggaagaatgggatatgccgaagaagccccttatgatgctattcatgtagga 18457278
Query: 831 gctgcagcccctgttgtaccccaggca 857
|||||||||||||||||||||||||||
Sbjct: 18457279 gctgcagcccctgttgtaccccaggca 18457305
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 512 agggttccaggcaacaatcagtgctccacacatg 545
||||||||||||||||||||||||||||||||||
Sbjct: 18442231 agggttccaggcaacaatcagtgctccacacatg 18442264
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,884,079
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 8
Length of query: 1238
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1217
Effective length of database: 2,808,413,156
Effective search space: 3417838810852
Effective search space used: 3417838810852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)