Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012947
(1034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029941.1| ragulator complex protein LAMTOR1 [Bos tauru... 318 5e-87
>ref|NP_001029941.1| ragulator complex protein LAMTOR1 [Bos taurus].
Length = 161
Score = 318 bits (815), Expect = 5e-87
Identities = 160/161 (99%), Positives = 161/161 (100%)
Frame = +2
Query: 161 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 340
MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK
Sbjct: 1 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 60
Query: 341 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 520
TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
Sbjct: 61 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 120
Query: 521 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 643
SEP+PFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
Sbjct: 121 SEPVPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,973,619
Number of extensions: 1019094
Number of successful extensions: 6881
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6822
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012947
(1034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542329.2| PREDICTED: hypothetical protein XP_542329 isofo... 315 4e-86
Alignment gi|XP_861521.1| PREDICTED: hypothetical protein XP_856428 isofo... 263 2e-70
>ref|XP_542329.2| PREDICTED: hypothetical protein XP_542329 isoform 1 [Canis
familiaris].
Length = 161
Score = 315 bits (807), Expect = 4e-86
Identities = 159/161 (98%), Positives = 159/161 (98%)
Frame = +2
Query: 161 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 340
MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLP RTDEQALLSSILAK
Sbjct: 1 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPPTRTDEQALLSSILAK 60
Query: 341 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 520
TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
Sbjct: 61 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 120
Query: 521 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 643
SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
Sbjct: 121 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 161
>ref|XP_861521.1| PREDICTED: hypothetical protein XP_856428 isoform 2 [Canis
familiaris].
Length = 135
Score = 263 bits (673), Expect = 2e-70
Identities = 131/133 (98%), Positives = 131/133 (98%)
Frame = +2
Query: 161 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 340
MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLP RTDEQALLSSILAK
Sbjct: 1 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPPTRTDEQALLSSILAK 60
Query: 341 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 520
TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
Sbjct: 61 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 120
Query: 521 SEPIPFSDLQQVS 559
SEPIPFSDLQQVS
Sbjct: 121 SEPIPFSDLQQVS 133
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,511,242
Number of extensions: 1050531
Number of successful extensions: 6778
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6741
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012947
(1034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129639.1| PREDICTED: ragulator complex protein LAMTOR1... 318 2e-87
Alignment gi|XP_003129654.2| PREDICTED: transmembrane O-methyltransferase... 62 7e-10
>ref|XP_003129639.1| PREDICTED: ragulator complex protein LAMTOR1-like [Sus scrofa].
Length = 161
Score = 318 bits (816), Expect = 2e-87
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = +2
Query: 161 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 340
MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK
Sbjct: 1 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 60
Query: 341 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 520
TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
Sbjct: 61 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 120
Query: 521 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 643
SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
Sbjct: 121 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 161
>ref|XP_003129654.2| PREDICTED: transmembrane O-methyltransferase-like [Sus scrofa].
Length = 315
Score = 61.6 bits (148), Expect = 7e-10
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = -1
Query: 89 MTRACIQHRSTVPRQPLSRAAARRGCRRN 3
MTRACIQHR TVPRQPLSRAAARRGCRRN
Sbjct: 1 MTRACIQHRPTVPRQPLSRAAARRGCRRN 29
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,325,268
Number of extensions: 664097
Number of successful extensions: 4504
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4483
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012947
(1034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079881.2| ragulator complex protein LAMTOR1 [Mus musculus]. 315 3e-86
>ref|NP_079881.2| ragulator complex protein LAMTOR1 [Mus musculus].
Length = 161
Score = 315 bits (808), Expect = 3e-86
Identities = 160/161 (99%), Positives = 160/161 (99%)
Frame = +2
Query: 161 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 340
MGCCYSSENEDSDQDREERKLLLDPSS PTKALNGAEPNYHSLPSARTDEQALLSSILAK
Sbjct: 1 MGCCYSSENEDSDQDREERKLLLDPSSTPTKALNGAEPNYHSLPSARTDEQALLSSILAK 60
Query: 341 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 520
TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
Sbjct: 61 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 120
Query: 521 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 643
SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
Sbjct: 121 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 161
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,709,276
Number of extensions: 830151
Number of successful extensions: 5347
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5317
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012947
(1034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060377.1| ragulator complex protein LAMTOR1 [Homo sapiens]. 318 4e-87
>ref|NP_060377.1| ragulator complex protein LAMTOR1 [Homo sapiens].
Length = 161
Score = 318 bits (816), Expect = 4e-87
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = +2
Query: 161 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 340
MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK
Sbjct: 1 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK 60
Query: 341 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 520
TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
Sbjct: 61 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA 120
Query: 521 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 643
SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
Sbjct: 121 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP 161
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,594,433
Number of extensions: 1014701
Number of successful extensions: 6770
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6721
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012947
(1034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 416 e-113
>Sscrofa_Chr09
|| Length = 153670197
Score = 416 bits (210), Expect = e-113
Identities = 220/222 (99%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 551 caggtctccaggatagctgcttatgcctacagtgcactttctcagatccgcgtggacgca 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436156 caggtctccaggatagctgcttatgcctacagtgcactttctcagatccgcgtggacgca 7436097
Query: 611 aaagaggagctggttgtacagtttgggatcccgtgaagagggggcctcccccctgccgct 670
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7436096 aaagaggagctggttgtacagtttgggatcccgtgaagagggggcc-cccccctgccgct 7436038
Query: 671 gcacagctctcctctcttcaccctgcctccaccccgcctccccggcccccagcctcactg 730
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7436037 gcacagctctcctctcttcaccccgcctccaccccgcctccccggcccccagcctcactg 7435978
Query: 731 cggcttacacagaaccctaacctgcgacgaatcccggcacgt 772
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7435977 cggcttacacagaaccctaacctgcgacgaatcccggcacgt 7435936
Score = 394 bits (199), Expect = e-107
Identities = 202/203 (99%)
Strand = Plus / Minus
Query: 1 gggttccggcggcagccgcggcgagcagcagctctggaaaggggttggcgcgggactgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7441544 gggttccggcggcagccgcggcgagcagcagctctggaaaggggttggcgcgggactgtg 7441485
Query: 61 gatctgtgctggatgcaggcgcgggtcatgtgaccggaagggctcctgacggacgccgtc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7441484 ggtctgtgctggatgcaggcgcgggtcatgtgaccggaagggctcctgacggacgccgtc 7441425
Query: 121 cctgctcggcgcggcctgagcgcccggccctacccccgccatggggtgctgctacagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7441424 cctgctcggcgcggcctgagcgcccggccctacccccgccatggggtgctgctacagcag 7441365
Query: 181 cgagaacgaggactcggaccagg 203
|||||||||||||||||||||||
Sbjct: 7441364 cgagaacgaggactcggaccagg 7441342
Score = 270 bits (136), Expect = 1e-69
Identities = 145/148 (97%)
Strand = Plus / Minus
Query: 201 aggaccgagaggagcggaagctgctgctggaccctagcagccccccaaccaaagccctca 260
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7437291 aggaccgagaggagcggaagctgctgctggaccctagcagccccccgaccaaagccctca 7437232
Query: 261 atggagccgagcccaactaccacagcctgccttctgctcgcacagatgagcaggcgctgc 320
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 7437231 atggagccgagcccaactaccacagcctgccttccgctcgcacagacgagcaggcgctgc 7437172
Query: 321 tctcctccatcctcgccaagacagccag 348
||||||||||||||||||||||||||||
Sbjct: 7437171 tctcctccatcctcgccaagacagccag 7437144
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 424 cagcacccgcctggccgtgctgagcagcagcctgacccattggaagaagctgccgccgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436589 cagcacccgcctggccgtgctgagcagcagcctgacccattggaagaagctgccgccgct 7436530
Query: 484 gccgtccctcaccagccagccccaccaagtgctggccagcgagcccatccccttctccga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436529 gccgtccctcaccagccagccccaccaagtgctggccagcgagcccatccccttctccga 7436470
Query: 544 cttgcagcaggt 555
||||||||||||
Sbjct: 7436469 cttgcagcaggt 7436458
Score = 222 bits (112), Expect = 3e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 836 gtggcagctcctgggactggccctcgaagccctggccagggcggggtggggggcacaggg 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7435872 gtggcagctcctgggactggccctcgaagccctggccagggcggggtggggggcacaggg 7435813
Query: 896 acagggccttcaccgtcgctgggaaggtggaggtgccacggcgacagcggtcacag 951
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 7435812 acagggccttcaccgtcgctgggaaggtggaggtgccacggcgacggcggtcacag 7435757
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 347 agcaacatcatcgacgtgtctgccgccgactcccagggcatggagcagcacgagtacatg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7436993 agcaacatcatcgacgtgtctgccgccgactcccagggcatggagcagcacgagtacatg 7436934
Query: 407 gaccgggcgaggcagtacag 426
||||||||||||||||||||
Sbjct: 7436933 gaccgggcgaggcagtacag 7436914
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,226,899
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 6
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)