Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012948
(970 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071526.1| death-associated protein 1 [Bos taurus]. 187 1e-47
>ref|NP_001071526.1| death-associated protein 1 [Bos taurus].
Length = 102
Score = 187 bits (475), Expect = 1e-47
Identities = 88/102 (86%), Positives = 89/102 (87%)
Frame = +2
Query: 146 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 325
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGD WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDTREEKDKDDQEWESPSPPKPTVFIS 60
Query: 326 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 451
G IARGDKDFPPAAAQVAHQKPHASID+HP PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASIDRHPSPRTQHIQQPRK 102
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,516,589
Number of extensions: 1127334
Number of successful extensions: 4677
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4649
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012948
(970 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849018.1| PREDICTED: similar to Death-associated protein ... 188 6e-48
>ref|XP_849018.1| PREDICTED: similar to Death-associated protein 1 (DAP-1) [Canis
familiaris].
Length = 102
Score = 188 bits (478), Expect = 6e-48
Identities = 89/102 (87%), Positives = 89/102 (87%)
Frame = +2
Query: 146 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 325
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGD WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDTKEERDKDDQEWESPSPPKPTVFIS 60
Query: 326 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 451
G IARGDKDFPPAAAQVAHQKPHASIDKHP PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASIDKHPSPRTQHIQQPRK 102
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,282,615
Number of extensions: 1168872
Number of successful extensions: 4728
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4705
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012948
(970 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134226.1| PREDICTED: death-associated protein 1-like [... 195 3e-50
>ref|XP_003134226.1| PREDICTED: death-associated protein 1-like [Sus scrofa].
Length = 102
Score = 195 bits (496), Expect = 3e-50
Identities = 92/102 (90%), Positives = 92/102 (90%)
Frame = +2
Query: 146 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 325
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDA WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAKEEKDKDDQEWESPSPPKPTVFIS 60
Query: 326 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 451
GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK
Sbjct: 61 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 102
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,898,739
Number of extensions: 729225
Number of successful extensions: 3008
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2986
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012948
(970 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666169.1| death-associated protein 1 [Mus musculus]. 179 2e-45
>ref|NP_666169.1| death-associated protein 1 [Mus musculus].
Length = 102
Score = 179 bits (455), Expect = 2e-45
Identities = 85/102 (83%), Positives = 87/102 (85%)
Frame = +2
Query: 146 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 325
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPH+GD WES SPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDGKEERDKDDQEWESTSPPKPTVFIS 60
Query: 326 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 451
G IARGDKDFPPAAAQVAHQKPHAS+DKH PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASMDKHVSPRTQHIQQPRK 102
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,296,077
Number of extensions: 954426
Number of successful extensions: 4105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4043
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012948
(970 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004385.1| death-associated protein 1 [Homo sapiens]. 186 3e-47
>ref|NP_004385.1| death-associated protein 1 [Homo sapiens].
Length = 102
Score = 186 bits (472), Expect = 3e-47
Identities = 87/102 (85%), Positives = 89/102 (87%)
Frame = +2
Query: 146 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 325
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPH+GD WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS 60
Query: 326 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 451
G IARGDKDFPPAAAQVAHQKPHAS+DKHP PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK 102
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,425,797
Number of extensions: 1142973
Number of successful extensions: 4762
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4731
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012948
(970 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1068 0.0
>Sscrofa_Chr16
|| Length = 86898991
Score = 1068 bits (539), Expect = 0.0
Identities = 616/635 (97%), Gaps = 5/635 (0%)
Strand = Plus / Plus
Query: 340 gggtgataaagactttccccctgcggctgcccaggtggcccaccagaagccccatgcctc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737687 gggtgataaagactttccccctgcggctgcccaggtggcccaccagaagccccatgcctc 86737746
Query: 400 catagacaagcatccatgcccgagaacccagcacatccagcagcctcgcaagtgatcggc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737747 catagacaagcatccatgcccgagaacccagcacatccagcagcctcgcaagtgatcggc 86737806
Query: 460 gagcacccaccacccaccctagcctcggttccctgacacttggtatttcccgacaaagag 519
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 86737807 gagcacccaccacccaccctagcctcggttccctgacacttggtatttcccaacaaagag 86737866
Query: 520 gactggcatcttcttcaaaacacttccccgtggagaaatccaagacaaagcaaaactccc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737867 gactggcatcttcttcaaaacacttccccgtggagaaatccaagacaaagcaaaactccc 86737926
Query: 580 cttccgttgccttaaatttccacatctaacactagaatcagaccccaaaccttgtttgca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737927 cttccgttgccttaaatttccacatctaacactagaatcagaccccaaaccttgtttgca 86737986
Query: 640 gggagtcctggctggtgtcacttgagggtccttgggcctcttacaagtgccattagcaga 699
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 86737987 gggagtcctggctggtgtcacttgaggatccttgggcctcttacaagtgccattagcaga 86738046
Query: 700 acttaccggacctgagtgaaatgagcttgttcagagtttagctttgttcccattcatcgg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738047 acttaccggacctgagtgaaatgagcttgttcagagtttagctttgttcccattcatcgg 86738106
Query: 760 ctgccctgtcagtggacttaaaaac-agcgggcacagattttggagggttaga-gaaggt 817
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 86738107 ctgccctgtcagtggacttaaaaacaagcgggcacagattttggagggttagaggaaggt 86738166
Query: 818 caggggaaagctcagtcatttcatgctttttggtaggaagaccaattacgtc-taacacc 876
||||||||||||||||||||||||||||||||||| || |||| || ||||| |||||||
Sbjct: 86738167 caggggaaagctcagtcatttcatgctttttggtaagaggacc-ataacgtcttaacacc 86738225
Query: 877 tagtgggcaaagaaaaagatgaaggccttgatttcaggaaggctgagcaggggaaacttt 936
||||||||| ||||| |||||||||| |||||| ||||||||||||||||| || |||||
Sbjct: 86738226 tagtgggcagagaaagagatgaaggcattgattacaggaaggctgagcaggagagacttt 86738285
Query: 937 tg-aacaggcaataacatccctgtatttccctccc 970
|| ||||||||| | |||| |||||||||||||||
Sbjct: 86738286 tgaaacaggcaacagcatcgctgtatttccctccc 86738320
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 81 aattccctctcgccggctagccttcagccgccgacgtctcggcccctcagaaagccggtc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86667866 aattccctctcgccggctagccttcagccgccgacgtctcggcccctcagaaagccggtc 86667925
Query: 141 gcaccatgtcttcgcctcccgagggaaagctagagacgaaagcaggacacccgcccgccg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86667926 gcaccatgtcttcgcctcccgagggaaagctagagacgaaagcaggacacccgcccgccg 86667985
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 200 gtgaaagctggtgggatgcgaattgtgcagaaacatccgcactctggagatgccaaggaa 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86680629 gtgaaagctggtgggatgcgaattgtgcagaaacatccgcactctggagatgccaaggaa 86680688
Query: 260 gagaaggacaaggacgaccaggagtgggaaagccccag 297
||||||||||||||||||||||||||||||||||||||
Sbjct: 86680689 gagaaggacaaggacgaccaggagtgggaaagccccag 86680726
Score = 103 bits (52), Expect = 2e-19
Identities = 87/96 (90%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 834 catttcatgctttttggtaggaagaccaattacgtc-taacacctagtgggcaaagaaaa 892
||||||||||||||||||| || ||||| | ||||| |||||||||||||||| |||||
Sbjct: 86740598 catttcatgctttttggtaagaggacca-taacgtcgtaacacctagtgggcagagaaag 86740656
Query: 893 agatgaaggccttgatttcaggaaggctgagcaggg 928
|||||||||| |||||| ||||||||||||||||||
Sbjct: 86740657 agatgaaggcattgattacaggaaggctgagcaggg 86740692
Score = 87.7 bits (44), Expect = 1e-14
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 294 ccagcccacccaaaccgactgtgttcatctctggagccatcgcccggg 341
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 86735766 ccagcccacccaaaccgacggtgttcatctctggagccatcgcccggg 86735813
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,891,189
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 5
Length of query: 970
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 949
Effective length of database: 2,808,413,156
Effective search space: 2665184085044
Effective search space used: 2665184085044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)