Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012949
(1291 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071526.1| death-associated protein 1 [Bos taurus]. 187 2e-47
>ref|NP_001071526.1| death-associated protein 1 [Bos taurus].
Length = 102
Score = 187 bits (475), Expect = 2e-47
Identities = 88/102 (86%), Positives = 89/102 (87%)
Frame = +2
Query: 173 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 352
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGD WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDTREEKDKDDQEWESPSPPKPTVFIS 60
Query: 353 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 478
G IARGDKDFPPAAAQVAHQKPHASID+HP PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASIDRHPSPRTQHIQQPRK 102
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,602,243
Number of extensions: 1491368
Number of successful extensions: 6025
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5992
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012949
(1291 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849018.1| PREDICTED: similar to Death-associated protein ... 188 8e-48
>ref|XP_849018.1| PREDICTED: similar to Death-associated protein 1 (DAP-1) [Canis
familiaris].
Length = 102
Score = 188 bits (478), Expect = 8e-48
Identities = 89/102 (87%), Positives = 89/102 (87%)
Frame = +2
Query: 173 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 352
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGD WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDTKEERDKDDQEWESPSPPKPTVFIS 60
Query: 353 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 478
G IARGDKDFPPAAAQVAHQKPHASIDKHP PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASIDKHPSPRTQHIQQPRK 102
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,863,575
Number of extensions: 1538755
Number of successful extensions: 5881
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5851
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012949
(1291 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134226.1| PREDICTED: death-associated protein 1-like [... 195 4e-50
>ref|XP_003134226.1| PREDICTED: death-associated protein 1-like [Sus scrofa].
Length = 102
Score = 195 bits (496), Expect = 4e-50
Identities = 92/102 (90%), Positives = 92/102 (90%)
Frame = +2
Query: 173 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 352
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDA WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAKEEKDKDDQEWESPSPPKPTVFIS 60
Query: 353 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 478
GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK
Sbjct: 61 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 102
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,319,645
Number of extensions: 962016
Number of successful extensions: 3812
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3790
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012949
(1291 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666169.1| death-associated protein 1 [Mus musculus]. 179 3e-45
>ref|NP_666169.1| death-associated protein 1 [Mus musculus].
Length = 102
Score = 179 bits (455), Expect = 3e-45
Identities = 85/102 (83%), Positives = 87/102 (85%)
Frame = +2
Query: 173 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 352
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPH+GD WES SPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDGKEERDKDDQEWESTSPPKPTVFIS 60
Query: 353 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 478
G IARGDKDFPPAAAQVAHQKPHAS+DKH PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASMDKHVSPRTQHIQQPRK 102
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,677,137
Number of extensions: 1271426
Number of successful extensions: 5237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5169
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012949
(1291 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004385.1| death-associated protein 1 [Homo sapiens]. 186 4e-47
>ref|NP_004385.1| death-associated protein 1 [Homo sapiens].
Length = 102
Score = 186 bits (472), Expect = 4e-47
Identities = 87/102 (85%), Positives = 89/102 (87%)
Frame = +2
Query: 173 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAXXXXXXXXXXWESPSPPKPTVFIS 352
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPH+GD WESPSPPKPTVFIS
Sbjct: 1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS 60
Query: 353 GAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK 478
G IARGDKDFPPAAAQVAHQKPHAS+DKHP PRTQHIQQPRK
Sbjct: 61 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK 102
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,834,466
Number of extensions: 1516630
Number of successful extensions: 6132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6091
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012949
(1291 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1754 0.0
>Sscrofa_Chr16
|| Length = 86898991
Score = 1754 bits (885), Expect = 0.0
Identities = 916/925 (99%), Gaps = 1/925 (0%)
Strand = Plus / Plus
Query: 367 gggtgataaagactttccccctgcggctgcccaggtggcccaccagaagccccatgcctc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737687 gggtgataaagactttccccctgcggctgcccaggtggcccaccagaagccccatgcctc 86737746
Query: 427 catagacaagcatccatgcccgagaacccagcacatccagcagcctcgcaagtgatcggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737747 catagacaagcatccatgcccgagaacccagcacatccagcagcctcgcaagtgatcggc 86737806
Query: 487 gagcacccaccacccaccctagcctcggttccctgacacttggtatttcccaacaaagag 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737807 gagcacccaccacccaccctagcctcggttccctgacacttggtatttcccaacaaagag 86737866
Query: 547 gactggcatcttcttcaaaacacttccccgtggagaaatccaagacaaagcaaaactccc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737867 gactggcatcttcttcaaaacacttccccgtggagaaatccaagacaaagcaaaactccc 86737926
Query: 607 cttccgttgccttaaatttccacatctaacactagaatcagaccccaaaccttgtttgca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86737927 cttccgttgccttaaatttccacatctaacactagaatcagaccccaaaccttgtttgca 86737986
Query: 667 gggagtcctggctggtgtcacttgagggtccttgggcctcttacaagtgccattagcaga 726
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 86737987 gggagtcctggctggtgtcacttgaggatccttgggcctcttacaagtgccattagcaga 86738046
Query: 727 acttaccggacctgagtgaaatgagcttgttcagagtttagctttgttcccattcatcgg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738047 acttaccggacctgagtgaaatgagcttgttcagagtttagctttgttcccattcatcgg 86738106
Query: 787 ctgccctgtcagtggacttaaaaacaagcgggcacagattttggagggttagaggaaggt 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738107 ctgccctgtcagtggacttaaaaacaagcgggcacagattttggagggttagaggaaggt 86738166
Query: 847 caggggaaagctcagtcatttcatgctttttggtaagaggaccataacgtcttaacacct 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738167 caggggaaagctcagtcatttcatgctttttggtaagaggaccataacgtcttaacacct 86738226
Query: 907 agtgggcagagaaagagatgaaggcattgattacaggaaggctgagcaggagagactttt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738227 agtgggcagagaaagagatgaaggcattgattacaggaaggctgagcaggagagactttt 86738286
Query: 967 gaaacaggcaacagcatcgctgtatttccctcccttgtgtgacaagggatcacagcacag 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738287 gaaacaggcaacagcatcgctgtatttccctcccttgtgtgacaagggatcacagcacag 86738346
Query: 1027 gagacaccaagcactcacagaaaggccacggaaaagctcacagctttgaaatggctcttc 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738347 gagacaccaagcactcacagaaaggccacggaaaagctcacagctttgaaatggctcttc 86738406
Query: 1087 tttcccaggagtcatcttgctgaaaattttgcctaaaccagatctgtcagtgcaggtccc 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86738407 tttcccaggagtcatcttgctgaaaattttgcctaaaccagatctgtcagtgcaggtccc 86738466
Query: 1147 aagtccagcacagccccaccatccacaatgggtttgtaggaaatcaaggaaaaaccttcc 1206
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 86738467 aagtccagcacagccccaccatccacaatgggtttgtaggaaatcaagg-aaaaccttcc 86738525
Query: 1207 tttctcaagcatcacctccagagctgtcttcgggttctggccgtgatcactgaaccaggg 1266
|| ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 86738526 ttcttcaggcatcacctccagagctgtcttcgggttctggccgtgatcactgaccagggg 86738585
Query: 1267 acacatagctagtcttggaaaccta 1291
|||||||||||||||||||| ||||
Sbjct: 86738586 acacatagctagtcttggaacccta 86738610
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 108 aattccctctcgccggctagccttcagccgccgacgtctcggcccctcagaaagccggtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86667866 aattccctctcgccggctagccttcagccgccgacgtctcggcccctcagaaagccggtc 86667925
Query: 168 gcaccatgtcttcgcctcccgagggaaagctagagacgaaagcaggacacccgcccgccg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86667926 gcaccatgtcttcgcctcccgagggaaagctagagacgaaagcaggacacccgcccgccg 86667985
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 227 gtgaaagctggtgggatgcgaattgtgcagaaacatccgcactctggagatgccaaggaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86680629 gtgaaagctggtgggatgcgaattgtgcagaaacatccgcactctggagatgccaaggaa 86680688
Query: 287 gagaaggacaaggacgaccaggagtgggaaagccccag 324
||||||||||||||||||||||||||||||||||||||
Sbjct: 86680689 gagaaggacaaggacgaccaggagtgggaaagccccag 86680726
Score = 180 bits (91), Expect = 1e-42
Identities = 107/111 (96%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 863 catttcatgctttttggtaagaggaccataacgtcttaacacctagtgggcagagaaaga 922
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 86740598 catttcatgctttttggtaagaggaccataacgtcgtaacacctagtgggcagagaaaga 86740657
Query: 923 gatgaaggcattgattacaggaaggctgagcaggagagacttttgaaacag 973
|||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 86740658 gatgaaggcattgattacaggaaggctgagcagg-gagactgtagaaacag 86740707
Score = 95.6 bits (48), Expect = 6e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 321 ccagcccacccaaaccgacggtgttcatctctggagccatcgcccggg 368
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86735766 ccagcccacccaaaccgacggtgttcatctctggagccatcgcccggg 86735813
Score = 75.8 bits (38), Expect = 5e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 2 gcagcggccgcgccccctctcggcggcctgggtctgtt 39
||||||||||||||||||||||||||||||||||||||
Sbjct: 86667760 gcagcggccgcgccccctctcggcggcctgggtctgtt 86667797
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 863 catttcatgctttttggtaagaggaccataac 894
||||||||||||||||||||||||||||||||
Sbjct: 86739988 catttcatgctttttggtaagaggaccataac 86740019
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,213,160
Number of extensions: 193
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 7
Length of query: 1291
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1270
Effective length of database: 2,808,413,156
Effective search space: 3566684708120
Effective search space used: 3566684708120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)