Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012951
(1424 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015631.1| tRNA-splicing ligase RtcB homolog [Bos tauru... 899 0.0
>ref|NP_001015631.1| tRNA-splicing ligase RtcB homolog [Bos taurus].
Length = 505
Score = 899 bits (2323), Expect = 0.0
Identities = 441/444 (99%), Positives = 443/444 (99%)
Frame = +3
Query: 93 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 272
MSRSYNDELQFLEKI+KNCWRIKKGFVPNMQVEGVFYVND+LEKLMFEELRNACRGGGVG
Sbjct: 1 MSRSYNDELQFLEKISKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG 60
Query: 273 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 452
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
Sbjct: 61 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120
Query: 453 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 632
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180
Query: 633 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 812
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 813 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 992
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
Query: 993 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 1172
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
Sbjct: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 1173 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 1352
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 1353 ETFGNTCHGAGRALSRAKSRRNLD 1424
ETFG TCHGAGRALSRAKSRRNLD
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLD 444
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,193,604
Number of extensions: 1788834
Number of successful extensions: 6148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6145
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 368
Effective length of database: 14,174,046
Effective search space: 5216048928
Effective search space used: 5216048928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012951
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012951
(1424 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531754.2| PREDICTED: similar to CG9987-PA [Canis familiar... 900 0.0
Alignment gi|XP_852206.1| PREDICTED: similar to CG9987-PA [Canis familiar... 857 0.0
>ref|XP_531754.2| PREDICTED: similar to CG9987-PA [Canis familiaris].
Length = 505
Score = 900 bits (2326), Expect = 0.0
Identities = 442/444 (99%), Positives = 443/444 (99%)
Frame = +3
Query: 93 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 272
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
Sbjct: 1 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 60
Query: 273 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 452
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
Sbjct: 61 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120
Query: 453 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 632
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPM+AKDLEEALEMGVDWSL
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL 180
Query: 633 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 812
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 813 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 992
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
Query: 993 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 1172
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
Sbjct: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 1173 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 1352
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 1353 ETFGNTCHGAGRALSRAKSRRNLD 1424
ETFG TCHGAGRALSRAKSRRNLD
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLD 444
>ref|XP_852206.1| PREDICTED: similar to CG9987-PA [Canis familiaris].
Length = 505
Score = 857 bits (2215), Expect = 0.0
Identities = 423/444 (95%), Positives = 429/444 (96%)
Frame = +3
Query: 93 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 272
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDAL KLMFEELRNA RGGGVG
Sbjct: 1 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALGKLMFEELRNAGRGGGVG 60
Query: 273 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 452
GFLPAMKQ GN+AALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
Sbjct: 61 GFLPAMKQTGNMAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120
Query: 453 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 632
NCGVRLLRTNLDES VQPVKEQLAQ MFDHIPVGVGSKGVIPM+AKDLEEALEMGV+WSL
Sbjct: 121 NCGVRLLRTNLDESGVQPVKEQLAQTMFDHIPVGVGSKGVIPMSAKDLEEALEMGVNWSL 180
Query: 633 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 812
REGY WAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
Sbjct: 181 REGYTWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 813 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 992
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVN+RQLACARIAS
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNNRQLACARIAS 300
Query: 993 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 1172
P GQDYLKGMAAAGNYAWVNRSSMTFLTRQA AKVFNTTPDDLDLHVIYDVSHNIAKVEQ
Sbjct: 301 PGGQDYLKGMAAAGNYAWVNRSSMTFLTRQALAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 1173 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 1352
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQ +L GGT GTCSYVLTGT+QGMT
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQLMLTGGTTGTCSYVLTGTKQGMT 420
Query: 1353 ETFGNTCHGAGRALSRAKSRRNLD 1424
ETFG TCHGAG ALSRAKS NLD
Sbjct: 421 ETFGTTCHGAGCALSRAKSHHNLD 444
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,836,132
Number of extensions: 1841559
Number of successful extensions: 6407
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6395
Number of HSP's successfully gapped: 2
Length of query: 474
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 367
Effective length of database: 15,307,552
Effective search space: 5617871584
Effective search space used: 5617871584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012951
(1424 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116458.1| tRNA-splicing ligase RtcB homolog [Sus scrof... 901 0.0
>ref|NP_001116458.1| tRNA-splicing ligase RtcB homolog [Sus scrofa].
Length = 505
Score = 901 bits (2328), Expect = 0.0
Identities = 442/444 (99%), Positives = 443/444 (99%)
Frame = +3
Query: 93 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 272
MSRSYNDELQFLEKINKNCWRI+KGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
Sbjct: 1 MSRSYNDELQFLEKINKNCWRIRKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 60
Query: 273 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 452
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
Sbjct: 61 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120
Query: 453 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 632
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180
Query: 633 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 812
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 813 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 992
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
Query: 993 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 1172
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
Sbjct: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 1173 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 1352
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 1353 ETFGNTCHGAGRALSRAKSRRNLD 1424
ETFG TCHGAGRALSRAKSRRNLD
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLD 444
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,809,703
Number of extensions: 1150000
Number of successful extensions: 4029
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4023
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 371
Effective length of database: 8,779,541
Effective search space: 3257209711
Effective search space used: 3257209711
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012951
(1424 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663397.1| tRNA-splicing ligase RtcB homolog [Mus musculus]. 898 0.0
>ref|NP_663397.1| tRNA-splicing ligase RtcB homolog [Mus musculus].
Length = 505
Score = 898 bits (2320), Expect = 0.0
Identities = 440/444 (99%), Positives = 442/444 (99%)
Frame = +3
Query: 93 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 272
MSR+YNDELQFL+KINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
Sbjct: 1 MSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 60
Query: 273 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 452
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
Sbjct: 61 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120
Query: 453 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 632
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180
Query: 633 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 812
REGYAWAEDKEHCEEYGRMLQADPNKVS RAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 813 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 992
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
Query: 993 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 1172
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
Sbjct: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 1173 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 1352
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 1353 ETFGNTCHGAGRALSRAKSRRNLD 1424
ETFG TCHGAGRALSRAKSRRNLD
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLD 444
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,266,878
Number of extensions: 1523631
Number of successful extensions: 5259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5239
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 369
Effective length of database: 12,463,779
Effective search space: 4599134451
Effective search space used: 4599134451
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012951
(1424 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055121.1| tRNA-splicing ligase RtcB homolog [Homo sapiens]. 902 0.0
>ref|NP_055121.1| tRNA-splicing ligase RtcB homolog [Homo sapiens].
Length = 505
Score = 902 bits (2331), Expect = 0.0
Identities = 443/444 (99%), Positives = 443/444 (99%)
Frame = +3
Query: 93 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 272
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
Sbjct: 1 MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG 60
Query: 273 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 452
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
Sbjct: 61 GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI 120
Query: 453 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 632
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
Sbjct: 121 NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL 180
Query: 633 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 812
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
Sbjct: 181 REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE 240
Query: 813 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 992
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
Sbjct: 241 YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS 300
Query: 993 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 1172
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
Sbjct: 301 PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ 360
Query: 1173 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 1352
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
Sbjct: 361 HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT 420
Query: 1353 ETFGNTCHGAGRALSRAKSRRNLD 1424
ETFG TCHGAGRALSRAKSRRNLD
Sbjct: 421 ETFGTTCHGAGRALSRAKSRRNLD 444
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,789,503
Number of extensions: 1825161
Number of successful extensions: 6264
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6250
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 368
Effective length of database: 14,802,980
Effective search space: 5447496640
Effective search space used: 5447496640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012951
(1424 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 371 e-100
>Sscrofa_Chr05
|| Length = 111506441
Score = 371 bits (187), Expect = e-100
Identities = 190/191 (99%)
Strand = Plus / Plus
Query: 1081 aggcatttgccaaggtcttcaacacaacccctgatgacttggacctacacgtgatctacg 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384039 aggcatttgccaaggtcttcaacacaacccctgatgacttggacctacacgtgatctacg 12384098
Query: 1141 atgtctctcacaatattgccaaagtcgaacagcatgtggtggacggaaaggaacggactc 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12384099 atgtctctcacaatattgccaaagtcgaacagcatgtggtggacggaaaggagcggactc 12384158
Query: 1201 tgctagtacacaggaagggctccacccgggctttccctcctcaccatcccctcattgccg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384159 tgctagtacacaggaagggctccacccgggctttccctcctcaccatcccctcattgccg 12384218
Query: 1261 ttgattaccaa 1271
|||||||||||
Sbjct: 12384219 ttgattaccaa 12384229
Score = 363 bits (183), Expect = 2e-97
Identities = 186/187 (99%)
Strand = Plus / Plus
Query: 1 gagtaccggaaggcggtgtttcgttccgccggacaacgcggcagccgctcttcaaagcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12366192 gagtaccggaaggcggtgtttcgttccgccggacaacgcggcagccgctcttcaaagcga 12366251
Query: 61 agccgggagtttttgttgcggttgtcgccaccatgagtcgcagttataacgatgagctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12366252 agccgggagtttttgttgcggttgtcgccaccatgagtcgcagttataacgatgagctgc 12366311
Query: 121 agttcttggaaaagatcaataaaaactgctggagaatcaagaagggcttcgtgcccaaca 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12366312 agttcttggaaaagattaataaaaactgctggagaatcaagaagggcttcgtgcccaaca 12366371
Query: 181 tgcaggt 187
|||||||
Sbjct: 12366372 tgcaggt 12366378
Score = 349 bits (176), Expect = 3e-93
Identities = 179/180 (99%)
Strand = Plus / Plus
Query: 904 cagatgccctggtagctatggaaaaagccatgaagagagacaagattatagtcaatgacc 963
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12383078 cagatgccctggtggctatggaaaaagccatgaagagagacaagattatagtcaatgacc 12383137
Query: 964 gtcagttggcttgtgctcgaatcgcttcccctgaggggcaggactacctgaagggaatgg 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12383138 gtcagttggcttgtgctcgaatcgcttcccctgaggggcaggactacctgaagggaatgg 12383197
Query: 1024 cagcggctgggaactacgcctgggtcaaccgctcttccatgaccttcttaacccgtcagg 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12383198 cagcggctgggaactacgcctgggtcaaccgctcttccatgaccttcttaacccgtcagg 12383257
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 744 cagctggggactctgggagccggcaaccactatgcagaaatccaagttgtggatgagatt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381480 cagctggggactctgggagccggcaaccactatgcagaaatccaagttgtggatgagatt 12381539
Query: 804 ttcaatgagtatgctgctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatg 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381540 ttcaatgagtatgctgctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatg 12381599
Query: 864 atccacagtggaagcagaggcttgggccaccaagtagccacag 906
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381600 atccacagtggaagcagaggcttgggccaccaagtagccacag 12381642
Score = 315 bits (159), Expect = 4e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 431 aggtggcgtcggatttgacatcaactgtggtgttcgcttgctgagaaccaatttagacga 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12378052 aggtggcgtcggatttgacatcaactgtggtgttcgcttgctgagaaccaatttagacga 12378111
Query: 491 aagtgatgtccagcctgtgaaggagcagcttgcccaggctatgtttgaccacattcctgt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12378112 aagtgatgtccagcctgtgaaggagcagcttgcccaggctatgtttgaccacattcctgt 12378171
Query: 551 tggggtggggtccaaaggcgtcatcccaatgaatgccaa 589
|||||||||||||||||||||||||||||||||||||||
Sbjct: 12378172 tggggtggggtccaaaggcgtcatcccaatgaatgccaa 12378210
Score = 311 bits (157), Expect = 6e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 590 agacttggaggaggccttggagatgggtgtggactggtccctaagagaaggctacgcctg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12380286 agacttggaggaggccttggagatgggtgtggactggtccctaagagaaggctacgcctg 12380345
Query: 650 ggccgaagacaaggagcactgtgaggagtatggaaggatgctgcaagctgaccccaataa 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12380346 ggccgaagacaaggagcactgtgaggagtatggaaggatgctgcaagctgaccccaataa 12380405
Query: 710 ggtctctgccagggccaaaaagagaggccttccccag 746
|||||||||||||||||||||||||||||||||||||
Sbjct: 12380406 ggtctctgccagggccaaaaagagaggccttccccag 12380442
Score = 206 bits (104), Expect = 2e-50
Identities = 110/112 (98%)
Strand = Plus / Plus
Query: 1272 ctcactggacaaccagtgctcattggtggcaccatgggaacctgtagctatgttctcact 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12385072 ctcactggacaaccagtgctcattggtggcaccatgggaacctgtagctatgttctcact 12385131
Query: 1332 ggcactgagcagggcatgactgagaccttcggaaacacctgccatggtgcgg 1383
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12385132 ggcactgagcagggcatgactgagaccttcggaacaacctgccatggtgcgg 12385183
Score = 204 bits (103), Expect = 1e-49
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 328 ttcatcgttccatcgggcttcctgatgtccattctggttacgggtttgctattggtaata 387
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12374003 ttcagcgttccatcgggcttcctgatgtccattctggttacgggtttgctattggtaata 12374062
Query: 388 tggcagcctttgatatgaatgaccccgaagcagtggtgtccccaggt 434
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12374063 tggcagcctttgatatgaatgaccccgaagcagtggtgtccccaggt 12374109
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 183 caggttgaaggagttttctatgtgaatgatgctctggaaaaattaatgtttgaggaacta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12371082 caggttgaaggagttttctatgtgaatgatgctctggaaaaattaatgtttgaggaacta 12371141
Query: 243 aggaatgcctgccgaggtggtgg 265
|||||||||||||||||||||||
Sbjct: 12371142 aggaatgcctgccgaggtggtgg 12371164
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 264 ggcgttggtggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctggg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12372283 ggcgttggtggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctggg 12372342
Query: 324 atcgttcat 332
|||||||||
Sbjct: 12372343 atcgttcat 12372351
Score = 85.7 bits (43), Expect = 6e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1382 gggtcgtgcactgtcccgagcaaagtcaagacgtaatttggat 1424
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387128 gggtcgtgcactgtcccgagcaaagtcaagacgtaatttggat 12387170
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,859,709
Number of extensions: 490
Number of successful extensions: 490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 11
Length of query: 1424
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1403
Effective length of database: 2,808,413,156
Effective search space: 3940203657868
Effective search space used: 3940203657868
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)