Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012953
(1088 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533319.2| PREDICTED: similar to MKI67 FHA domain interact... 424 e-119
Alignment gi|XP_858230.1| PREDICTED: similar to MKI67 FHA domain interact... 416 e-116
Alignment gi|XP_543585.2| PREDICTED: similar to cleavage stimulation fact... 60 4e-09
Alignment gi|XP_850506.1| PREDICTED: similar to cleavage stimulation fact... 59 6e-09
Alignment gi|XP_549135.2| PREDICTED: similar to cleavage stimulation fact... 59 6e-09
Alignment gi|XP_861538.1| PREDICTED: similar to cleavage stimulation fact... 59 6e-09
Alignment gi|XP_861513.1| PREDICTED: similar to cleavage stimulation fact... 59 6e-09
Alignment gi|XP_861476.1| PREDICTED: similar to cleavage stimulation fact... 59 6e-09
Alignment gi|XP_861450.1| PREDICTED: similar to cleavage stimulation fact... 59 6e-09
Alignment gi|XP_861405.1| PREDICTED: similar to cleavage stimulation fact... 59 6e-09
>ref|XP_533319.2| PREDICTED: similar to MKI67 FHA domain interacting nucleolar
phosphoprotein (Nucleolar protein interacting with the
FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein
Nopp34) isoform 1 [Canis familiaris].
Length = 297
Score = 424 bits (1090), Expect = e-119
Identities = 213/287 (74%), Positives = 235/287 (81%), Gaps = 2/287 (0%)
Frame = +2
Query: 77 MAALAAPVGPLLSLNPQEDAKFQKKVAQARRRATKQPEKQKLTPGVIYVGHLPPSLYETQ 256
MAALA P P LSLNPQE+AKF+K+V QA RRA +Q EK+KLTPGVIYVGHLPP+LYETQ
Sbjct: 1 MAALAGPAKPFLSLNPQEEAKFRKEVTQACRRAAQQKEKEKLTPGVIYVGHLPPALYETQ 60
Query: 257 IRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHI 436
IRAYFSQFGTVTR RLSRSK+TGNSKGY FVEF SEDVA+I A+TMNNYLFGERLL+CH
Sbjct: 61 IRAYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFASEDVAKIVADTMNNYLFGERLLQCHF 120
Query: 437 IPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKG 616
IPPEKVHEELFREW++PFK+PS+PAVKRYNQ RTL QKL+MEERFKKKEK LRK+LAKKG
Sbjct: 121 IPPEKVHEELFREWYIPFKKPSYPAVKRYNQNRTLLQKLQMEERFKKKEKLLRKKLAKKG 180
Query: 617 IDYNFPSLVLHKDEEKPSFTGPRNSRKHQ--XXXXXXXXXXXXXXNTPEKTVDSQGPTPV 790
IDY+FPSL+LHK E+ S TG Q TPEKTVDSQG TPV
Sbjct: 181 IDYDFPSLILHKKEKNASDTGLEKPTDSQVLPKKKKKKKKSSRTTTTPEKTVDSQGSTPV 240
Query: 791 CTPTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSS 931
CTP FLEKRKSE AK+N DD+D+EIVFKQPV G KEETQETQ PT S
Sbjct: 241 CTPAFLEKRKSEAAKINVDDEDNEIVFKQPVPGVKEETQETQTPTRS 287
>ref|XP_858230.1| PREDICTED: similar to MKI67 FHA domain interacting nucleolar
phosphoprotein (Nucleolar protein interacting with the
FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein
Nopp34) isoform 2 [Canis familiaris].
Length = 276
Score = 416 bits (1068), Expect = e-116
Identities = 211/285 (74%), Positives = 235/285 (82%)
Frame = +2
Query: 77 MAALAAPVGPLLSLNPQEDAKFQKKVAQARRRATKQPEKQKLTPGVIYVGHLPPSLYETQ 256
MAALA P P LSLNPQE+AKF+K+V QA RRA +Q EK+KLTPGVIYVGHLPP+LYETQ
Sbjct: 1 MAALAGPAKPFLSLNPQEEAKFRKEVTQACRRAAQQKEKEKLTPGVIYVGHLPPALYETQ 60
Query: 257 IRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHI 436
IRAYFSQFGTVTR RLSRSK+TGNSKGY FVEF SEDVA+I A+TMNNYLFGERLL+CH
Sbjct: 61 IRAYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFASEDVAKIVADTMNNYLFGERLLQCHF 120
Query: 437 IPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKG 616
IPPEKVHEELFREW++PFK+PS+PAVKRYNQ RTL QKL+MEERFKKKEK LRK+LAKKG
Sbjct: 121 IPPEKVHEELFREWYIPFKKPSYPAVKRYNQNRTLLQKLQMEERFKKKEKLLRKKLAKKG 180
Query: 617 IDYNFPSLVLHKDEEKPSFTGPRNSRKHQXXXXXXXXXXXXXXNTPEKTVDSQGPTPVCT 796
IDY+FPSLVL K ++K ++SR TPEKTVDSQG TPVCT
Sbjct: 181 IDYDFPSLVLPKKKKKKK----KSSR---------------TTTTPEKTVDSQGSTPVCT 221
Query: 797 PTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSS 931
P FLEKRKSE AK+N DD+D+EIVFKQPV G KEETQETQ PT S
Sbjct: 222 PAFLEKRKSEAAKINVDDEDNEIVFKQPVPGVKEETQETQTPTRS 266
>ref|XP_543585.2| PREDICTED: similar to cleavage stimulation factor, 3 pre-RNA
subunit 2, tau [Canis familiaris].
Length = 459
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G+V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_850506.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform
3 [Canis familiaris].
Length = 557
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_549135.2| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform
2 [Canis familiaris].
Length = 597
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_861538.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform
10 [Canis familiaris].
Length = 562
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_861513.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform
9 [Canis familiaris].
Length = 471
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_861476.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform
8 [Canis familiaris].
Length = 498
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_861450.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform
7 [Canis familiaris].
Length = 253
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_861405.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform
5 [Canis familiaris].
Length = 577
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,639,844
Number of extensions: 967745
Number of successful extensions: 4212
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 4098
Number of HSP's successfully gapped: 95
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012953
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012953
(1088 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029526.1| MKI67 FHA domain-interacting nucleolar phosp... 473 e-133
Alignment gi|NP_001229511.1| cleavage stimulation factor subunit 2 tau va... 60 3e-09
Alignment gi|NP_777110.1| cleavage stimulation factor subunit 2 [Bos taur... 59 6e-09
Alignment gi|XP_001254105.1| PREDICTED: cleavage stimulation factor subun... 59 6e-09
Alignment gi|XP_002699579.1| PREDICTED: similar to RNA binding motif prot... 58 1e-08
Alignment gi|NP_001193433.1| RNA-binding protein 39 [Bos taurus]. 57 4e-08
Alignment gi|NP_001096578.1| ribonucleoprotein PTB-binding 1 [Bos taurus]. 55 8e-08
Alignment gi|NP_001069104.1| probable RNA-binding protein 23 [Bos taurus]. 54 2e-07
Alignment gi|XP_002689241.1| PREDICTED: heterogeneous nuclear ribonucleop... 54 2e-07
Alignment gi|XP_593096.3| PREDICTED: heterogeneous nuclear ribonucleoprot... 54 2e-07
>ref|NP_001029526.1| MKI67 FHA domain-interacting nucleolar phosphoprotein [Bos taurus].
Length = 296
Score = 473 bits (1216), Expect = e-133
Identities = 240/287 (83%), Positives = 249/287 (86%), Gaps = 2/287 (0%)
Frame = +2
Query: 77 MAALAAPVGPLLSLNPQEDAKFQKKVAQARRRATKQPEKQKLTPGVIYVGHLPPSLYETQ 256
MAA P PLLSLNPQEDAKF+K+VAQ RRRATKQ EKQK TPGVIYVGHLPP+LYETQ
Sbjct: 1 MAAFGGPAKPLLSLNPQEDAKFKKEVAQVRRRATKQQEKQKPTPGVIYVGHLPPTLYETQ 60
Query: 257 IRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHI 436
IRAYFSQFGTVTR RLSRSKKTGNSKGYGFVEFESEDVA+IAAETMNNYLFGERLLKCH
Sbjct: 61 IRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHF 120
Query: 437 IPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKG 616
IPPEKVHEELFREWHMPFKRPS+PAVKRYNQ R+L QKLRMEERFKKKEK LRKRLAKKG
Sbjct: 121 IPPEKVHEELFREWHMPFKRPSYPAVKRYNQNRSLVQKLRMEERFKKKEKLLRKRLAKKG 180
Query: 617 IDYNFPSL--VLHKDEEKPSFTGPRNSRKHQXXXXXXXXXXXXXXNTPEKTVDSQGPTPV 790
IDYNFPSL VLHK+EE S TGP+NSRKHQ TPEK VDSQGPTPV
Sbjct: 181 IDYNFPSLVKVLHKNEENASNTGPQNSRKHQ-ALRKKKKAASVTPETPEKAVDSQGPTPV 239
Query: 791 CTPTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSS 931
CTP FLEKRKSEVAKMNDDDKD+EIVFKQPVSG KEETQETQ P SS
Sbjct: 240 CTPAFLEKRKSEVAKMNDDDKDNEIVFKQPVSGVKEETQETQSPASS 286
>ref|NP_001229511.1| cleavage stimulation factor subunit 2 tau variant [Bos taurus].
Length = 642
Score = 60.1 bits (144), Expect = 3e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G+V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|NP_777110.1| cleavage stimulation factor subunit 2 [Bos taurus].
Length = 572
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_001254105.1| PREDICTED: cleavage stimulation factor subunit 2, partial [Bos
taurus].
Length = 275
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_002699579.1| PREDICTED: similar to RNA binding motif protein, X-linked 2 [Bos
taurus].
Length = 358
Score = 58.2 bits (139), Expect = 1e-08
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
I++G LP L E I FSQ+G + + L R KKTG SKG+ F+ +E + +A +
Sbjct: 58 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 117
Query: 395 NNYLFGERLLKCHIIP----PEKVHE--ELFRE-------WHMPFKRPSFPAVKRYNQKR 535
N R ++ + PE E E+ RE H P S + K+
Sbjct: 118 NGIKIKGRTIRVDHVSNYRLPEDSEEMDEVTRELQERGCGTHTPPPSSSEGSEDDKPTKK 177
Query: 536 TLRQKLRMEERFKKKEKSLRKRLAKKGIDYNFPSLVLHKDEEKPSFTGPRNSRKH 700
+ K +++ K KEK+ R+ A++ + P + K+++ P ++S KH
Sbjct: 178 HKKDKKEKKKKKKDKEKTGREVQAEQPASSSLPRSKMIKEKDDPG--SKKHSGKH 230
>ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus].
Length = 530
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 232 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 291
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 292 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 328
>ref|NP_001096578.1| ribonucleoprotein PTB-binding 1 [Bos taurus].
Length = 716
Score = 55.5 bits (132), Expect = 8e-08
Identities = 32/92 (34%), Positives = 48/92 (52%)
Frame = +2
Query: 158 QARRRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKG 337
Q+R R + + + T ++ V +LPPSL + Q FG++ R L S++TG+SKG
Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKG 174
Query: 338 YGFVEFESEDVARIAAETMNNYLFGERLLKCH 433
YGF E+ +D A A + G R L H
Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 206
>ref|NP_001069104.1| probable RNA-binding protein 23 [Bos taurus].
Length = 463
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGVI--YVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G + YVG L ++ E +R FG + + L +
Sbjct: 254 QASQAEKNRLAAMANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEPFGKIDNIVLMKDS 313
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + AR A E +N + R ++
Sbjct: 314 ETGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 350
>ref|XP_002689241.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Bos taurus].
Length = 305
Score = 53.9 bits (128), Expect = 2e-07
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG L + E + +FSQFGTV + + K++G +G+GFV F++ D A AA
Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK 159
Query: 395 NNYLFGERLLKCHIIPPEKVH 457
+ + G R+ +P E +H
Sbjct: 160 FHPIQGHRVEVKKAVPKEDIH 180
>ref|XP_593096.3| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Bos taurus].
Length = 305
Score = 53.9 bits (128), Expect = 2e-07
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG L + E + +FSQFGTV + + K++G +G+GFV F++ D A AA
Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK 159
Query: 395 NNYLFGERLLKCHIIPPEKVH 457
+ + G R+ +P E +H
Sbjct: 160 FHPIQGHRVEVKKAVPKEDIH 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,933,863
Number of extensions: 936065
Number of successful extensions: 3116
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 3082
Number of HSP's successfully gapped: 34
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012953
(1088 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095297.1| antigen KI-67 [Sus scrofa]. 542 e-154
Alignment gi|XP_001926989.1| PREDICTED: cleavage stimulation factor subun... 60 2e-09
Alignment gi|XP_003360436.1| PREDICTED: cleavage stimulation factor subun... 59 4e-09
Alignment gi|XP_003135279.1| PREDICTED: cleavage stimulation factor subun... 59 4e-09
Alignment gi|NP_001230600.1| RNA binding motif protein, X-linked 2 [Sus s... 58 1e-08
Alignment gi|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [... 57 2e-08
Alignment gi|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrof... 57 2e-08
Alignment gi|XP_003360014.1| PREDICTED: RNA-binding protein 39 [Sus scrof... 57 2e-08
Alignment gi|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrof... 57 2e-08
Alignment gi|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 ... 57 2e-08
>ref|NP_001095297.1| antigen KI-67 [Sus scrofa].
Length = 294
Score = 542 bits (1397), Expect = e-154
Identities = 272/294 (92%), Positives = 272/294 (92%)
Frame = +2
Query: 77 MAALAAPVGPLLSLNPQEDAKFQKKVAQARRRATKQPEKQKLTPGVIYVGHLPPSLYETQ 256
MAALAA VGPLLSLNPQEDAKFQKKVA ARRRATKQPEKQKLTPGVIYVGHLPPSLYETQ
Sbjct: 1 MAALAAXVGPLLSLNPQEDAKFQKKVAXARRRATKQPEKQKLTPGVIYVGHLPPSLYETQ 60
Query: 257 IRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHI 436
IRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHI
Sbjct: 61 IRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHI 120
Query: 437 IPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKG 616
IPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKG
Sbjct: 121 IPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKG 180
Query: 617 IDYNFPSLVLHKDEEKPSFTGPRNSRKHQXXXXXXXXXXXXXXNTPEKTVDSQGPTPVCT 796
IDYNFPSLVLHKDEEKPSFTGPRNSRKHQ NTPEKTVDSQGPTPVCT
Sbjct: 181 IDYNFPSLVLHKDEEKPSFTGPRNSRKHQALRKKKKKEALAALNTPEKTVDSQGPTPVCT 240
Query: 797 PTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSSXXXXXXNNQ 958
PTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSS NNQ
Sbjct: 241 PTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSSRKKRRKNNQ 294
>ref|XP_001926989.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 1 [Sus scrofa].
Length = 615
Score = 60.1 bits (144), Expect = 2e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G+V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_003360436.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Sus scrofa].
Length = 592
Score = 59.3 bits (142), Expect = 4e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|XP_003135279.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Sus scrofa].
Length = 572
Score = 59.3 bits (142), Expect = 4e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|NP_001230600.1| RNA binding motif protein, X-linked 2 [Sus scrofa].
Length = 329
Score = 57.8 bits (138), Expect = 1e-08
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
I++G LP L E I FSQ+G + + L R KKTG SKG+ F+ +E + +A +
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 395 NNYLFGERLLKCHII----------PPEKVHEELFREW---HMPFKRPSFPAVKRYNQKR 535
N R ++ + + V +EL H P + S + K+
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEETDDVTKELQERGCGAHTPSQSSSESSEDDKPTKK 157
Query: 536 TLRQKLRMEERFKKKEKSLRKRLAKKGIDYNFPSLVLHKDEEKPSFTGPRNSRKH 700
+ K ++R K KEK+ ++ LA++ + P + K+++ P S+KH
Sbjct: 158 HKKDKKEKKKRKKDKEKTDQEVLAEQPASSSSPRSKMTKEKDDP------GSKKH 206
>ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa].
Length = 443
Score = 56.6 bits (135), Expect = 2e-08
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK T G +YVG L ++ E +R F FG + + L +
Sbjct: 241 QASQAEKNRLAAMANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS 300
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
TG SKGYGF+ F + AR A E +N + R ++
Sbjct: 301 DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR 337
>ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa].
Length = 502
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 204 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 263
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 264 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 300
>ref|XP_003360014.1| PREDICTED: RNA-binding protein 39 [Sus scrofa].
Length = 504
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 200 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 259
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 260 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 296
>ref|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrofa].
Length = 508
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 204 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 263
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 264 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 300
>ref|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 [Sus scrofa].
Length = 524
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 226 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 285
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 286 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,351,175
Number of extensions: 596844
Number of successful extensions: 2130
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 2101
Number of HSP's successfully gapped: 31
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012953
(1088 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080748.3| MKI67 FHA domain-interacting nucleolar phosphop... 297 1e-80
Alignment gi|NP_112539.2| cleavage stimulation factor subunit 2 tau varia... 60 3e-09
Alignment gi|NP_573459.1| cleavage stimulation factor subunit 2 [Mus musc... 59 5e-09
Alignment gi|NP_082187.1| ribonucleoprotein PTB-binding 1 [Mus musculus]. 57 3e-08
Alignment gi|NP_573505.2| RNA-binding protein 39 [Mus musculus]. 57 3e-08
Alignment gi|NP_766350.2| RNA-binding protein 34 [Mus musculus]. 54 2e-07
Alignment gi|NP_775552.1| RNA-binding motif protein, X-linked 2 [Mus musc... 54 3e-07
Alignment gi|NP_084148.1| heterogeneous nuclear ribonucleoprotein A0 [Mus... 53 4e-07
Alignment gi|NP_766022.1| CUGBP Elav-like family member 3 [Mus musculus]. 53 4e-07
Alignment gi|NP_034151.3| deleted in azoospermia-like [Mus musculus]. 52 6e-07
>ref|NP_080748.3| MKI67 FHA domain-interacting nucleolar phosphoprotein [Mus
musculus].
Length = 317
Score = 297 bits (760), Expect = 1e-80
Identities = 167/306 (54%), Positives = 208/306 (67%), Gaps = 21/306 (6%)
Frame = +2
Query: 77 MAALAAPVGPLLSLNPQEDAKFQKKVAQARRRATK--QPEKQKLTPGVIYVGHLPPSLYE 250
MA LA P P L+LNPQED++F+K + Q + R K Q +K+KL GV+Y+GHLP +L E
Sbjct: 1 MAGLAGPAKPSLALNPQEDSQFEKALTQIQGRTKKPQQKKKEKLNRGVVYLGHLPSTLSE 60
Query: 251 TQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKC 430
+ I Y +QFG ++R RLSRSK+TGNSKGY FVEFESEDVA+I AETM+NYLFGERLL C
Sbjct: 61 SHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLLSC 120
Query: 431 HIIPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAK 610
+P +KVH++LF + + F RPSFPAVKRYN+KR Q L+ME RFKKKEK LRK+LA
Sbjct: 121 KFMPRKKVHKDLFSQRNALFHRPSFPAVKRYNRKRGHLQMLKMEYRFKKKEKLLRKKLAA 180
Query: 611 KGIDYNFPSLVL---------HKDEE--------KPSFTG-PRNSRKHQXXXXXXXXXXX 736
KGIDY+FPSLVL H+D E K +G PR K
Sbjct: 181 KGIDYSFPSLVLPKPKNIAVAHRDSEGNQVLPDQKEGLSGEPRRKEKMMKEDISNNIPKK 240
Query: 737 XXXNTPEK-TVDSQGPTPVCTPTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQET 913
+ +K +VDSQGPTPVCTPTFLE+RKS+V ++ DKD EI+ K PV KE+TQ+T
Sbjct: 241 RKRSRRKKSSVDSQGPTPVCTPTFLERRKSQVMEVG-GDKDDEIILKLPVPPVKEDTQKT 299
Query: 914 QIPTSS 931
PTS+
Sbjct: 300 --PTSA 303
>ref|NP_112539.2| cleavage stimulation factor subunit 2 tau variant [Mus musculus].
Length = 632
Score = 60.1 bits (144), Expect = 3e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G+V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|NP_573459.1| cleavage stimulation factor subunit 2 [Mus musculus].
Length = 580
Score = 59.3 bits (142), Expect = 5e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|NP_082187.1| ribonucleoprotein PTB-binding 1 [Mus musculus].
Length = 748
Score = 56.6 bits (135), Expect = 3e-08
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Frame = +2
Query: 158 QARRRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKG 337
Q+R R + + + T ++ V +LPPSL + Q FG++ R L S++TG+SKG
Sbjct: 115 QSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKG 174
Query: 338 YGFVEFESEDVARIAAETMNNYLFGERLLKCH-----IIPPEKVHEELFREWHMP 487
YGF E+ +D A A + G R L H + P +H H+P
Sbjct: 175 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDHLP 229
>ref|NP_573505.2| RNA-binding protein 39 [Mus musculus].
Length = 530
Score = 56.6 bits (135), Expect = 3e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 226 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 285
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 286 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
>ref|NP_766350.2| RNA-binding protein 34 [Mus musculus].
Length = 442
Score = 53.9 bits (128), Expect = 2e-07
Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG+LP + ++ + +F G++ +R+ R+ TG +G+G+V FE+ D +A +
Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 352
Query: 395 NNYLFGERLLKCHIIPPEKVHEE-----LFREWHMPFKRPSFPAVKRYNQKRTLRQKLRM 559
N+ L G +L + EK+ ++ L ++ P +R +F + + + K
Sbjct: 353 NSELMGRKLRVMRSVNKEKLKQQNSNPSLKKDVIKPKQRLNF--TSKEGKFHSKEGKFHS 410
Query: 560 EERF--------KKKEKSLRKRLAKK 613
+ F KKK+K +K++ K
Sbjct: 411 KNAFIGEKAVLMKKKKKGQKKKVQMK 436
>ref|NP_775552.1| RNA-binding motif protein, X-linked 2 [Mus musculus].
Length = 326
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
I+VG LP L E I FSQ+G + + L R KKTG SKG+ F+ +E + +A +
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 395 NNYLFGERLLKC-HI----IPPEK-----VHEELFREWHMPFKRPSFPAVKRYNQKRTLR 544
N R ++ H+ P E V EL + PS P ++ L
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEKGCGVKTPPSSPPEVSEDEDAKLT 157
Query: 545 QKLRMEERFKKKEK 586
+K + +++ KKK K
Sbjct: 158 KKHKKDKKEKKKRK 171
>ref|NP_084148.1| heterogeneous nuclear ribonucleoprotein A0 [Mus musculus].
Length = 305
Score = 53.1 bits (126), Expect = 4e-07
Identities = 27/81 (33%), Positives = 44/81 (54%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG L + E + +FSQFG V + + K++G +G+GFV F+S D A AA
Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVK 159
Query: 395 NNYLFGERLLKCHIIPPEKVH 457
+ + G R+ +P E +H
Sbjct: 160 FHPIQGHRVEVKKAVPKEDIH 180
>ref|NP_766022.1| CUGBP Elav-like family member 3 [Mus musculus].
Length = 465
Score = 53.1 bits (126), Expect = 4e-07
Identities = 35/129 (27%), Positives = 63/129 (48%)
Frame = +2
Query: 62 PVAGLMAALAAPVGPLLSLNPQEDAKFQKKVAQARRRATKQPEKQKLTPGVIYVGHLPPS 241
P A + A A P P L + Q Q++ Q +++ +Q +++ I++ HLP
Sbjct: 332 PAAYSLVAPAFPQPPAL-VAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE 390
Query: 242 LYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERL 421
+++I F FG V ++ + T SK +GFV F++ A+ A + MN + G +
Sbjct: 391 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 450
Query: 422 LKCHIIPPE 448
LK + P+
Sbjct: 451 LKVQLKRPK 459
>ref|NP_034151.3| deleted in azoospermia-like [Mus musculus].
Length = 298
Score = 52.4 bits (124), Expect = 6e-07
Identities = 25/68 (36%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +2
Query: 197 KLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESE-DVA 373
K+ P ++VG + + ET+IR++F+++G+V +++ + +TG SKGYGFV F ++ DV
Sbjct: 36 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII-TDRTGVSKGYGFVSFYNDVDVQ 94
Query: 374 RIAAETMN 397
+I +N
Sbjct: 95 KIVESQIN 102
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,225,425
Number of extensions: 812168
Number of successful extensions: 2904
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 2864
Number of HSP's successfully gapped: 44
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012953
(1088 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115766.3| MKI67 FHA domain-interacting nucleolar phosphop... 397 e-110
Alignment gi|NP_056050.1| cleavage stimulation factor subunit 2 tau varia... 60 4e-09
Alignment gi|NP_001316.1| cleavage stimulation factor subunit 2 [Homo sap... 59 6e-09
Alignment gi|NP_057108.2| RNA-binding motif protein, X-linked 2 [Homo sap... 57 4e-08
Alignment gi|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapie... 57 4e-08
Alignment gi|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapie... 57 4e-08
Alignment gi|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens]. 57 4e-08
Alignment gi|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens]. 57 4e-08
Alignment gi|NP_055829.2| RNA-binding protein 34 isoform 1 [Homo sapiens]. 57 4e-08
Alignment gi|NP_597709.2| ribonucleoprotein PTB-binding 1 [Homo sapiens]. 55 1e-07
>ref|NP_115766.3| MKI67 FHA domain-interacting nucleolar phosphoprotein [Homo
sapiens].
Length = 293
Score = 397 bits (1019), Expect = e-110
Identities = 197/285 (69%), Positives = 234/285 (82%)
Frame = +2
Query: 77 MAALAAPVGPLLSLNPQEDAKFQKKVAQARRRATKQPEKQKLTPGVIYVGHLPPSLYETQ 256
MA + P GP+LSLNPQED +FQK+VAQ R+R T++ ++++LTPGV+YV HLP L ETQ
Sbjct: 1 MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQ 60
Query: 257 IRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHI 436
I +YFSQFGTVTR RLSRSK+TGNSKGY FVEFESEDVA+I AETMNNYLFGERLL+CH
Sbjct: 61 IFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF 120
Query: 437 IPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKG 616
+PPEKVH+ELF++W++PFK+PS+P+VKRYN+ RTL QKLRMEERFKKKE+ LRK+LAKKG
Sbjct: 121 MPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKG 180
Query: 617 IDYNFPSLVLHKDEEKPSFTGPRNSRKHQXXXXXXXXXXXXXXNTPEKTVDSQGPTPVCT 796
IDY+FPSL+L K E S T + S K Q +TPEKTVDSQGPTPVCT
Sbjct: 181 IDYDFPSLILQK-TESISKTNRQTSTKGQ-VLRKKKKKVSGTLDTPEKTVDSQGPTPVCT 238
Query: 797 PTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSS 931
PTFLE+RKS+VA++NDDDKD EIVFKQP+S KEE QETQ PT S
Sbjct: 239 PTFLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHS 283
>ref|NP_056050.1| cleavage stimulation factor subunit 2 tau variant [Homo sapiens].
Length = 616
Score = 60.1 bits (144), Expect = 4e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G+V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|NP_001316.1| cleavage stimulation factor subunit 2 [Homo sapiens].
Length = 577
Score = 59.3 bits (142), Expect = 6e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG++P E Q++ FS+ G V RL ++TG KGYGF E++ ++ A A +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 395 NNYLFGERLLKCHIIPPEKVHEEL 466
N F R L+ EK EEL
Sbjct: 78 NGREFSGRALRVDNAASEKNKEEL 101
>ref|NP_057108.2| RNA-binding motif protein, X-linked 2 [Homo sapiens].
Length = 322
Score = 56.6 bits (135), Expect = 4e-08
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
I++G LP L E I FSQ+G + + L R KKTG SKG+ F+ +E + +A +
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 395 NNYLFGERLLKCHIIP---PEKVHEEL------FREWHMPFKRPSFPAVKRYNQKRTLRQ 547
N R ++ + K EE+ +E + PS P++ ++ +
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPS-PSLSESSEDEKPTK 156
Query: 548 KLRMEERFKKKEKSLRKRLAKKGIDYNFPS-------LVLHKDEEKPSFTGPRNSRKHQ 703
K + +++ KKK+K K A + + PS V KD+ P +NS + Q
Sbjct: 157 KHKKDKKEKKKKKK-EKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQ 214
>ref|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapiens].
Length = 502
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 204 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 263
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 264 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 300
>ref|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapiens].
Length = 508
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 204 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 263
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 264 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 300
>ref|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens].
Length = 524
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 226 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 285
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 286 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
>ref|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens].
Length = 530
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 143 QKKVAQARRRATKQPEKQKLTPGV--IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSK 316
Q A+ R A QK + G +YVG L ++ E +R F FG + ++L
Sbjct: 226 QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS 285
Query: 317 KTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLK 427
+TG SKGYGF+ F + A+ A E +N + R +K
Sbjct: 286 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
>ref|NP_055829.2| RNA-binding protein 34 isoform 1 [Homo sapiens].
Length = 430
Score = 56.6 bits (135), Expect = 4e-08
Identities = 27/83 (32%), Positives = 47/83 (56%)
Frame = +2
Query: 215 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETM 394
++VG+LP + E+ I +F G++ +R+ R K TG KG+G+V FE+ D +A +
Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348
Query: 395 NNYLFGERLLKCHIIPPEKVHEE 463
N+ L G +L + EK ++
Sbjct: 349 NSELMGRKLRVMRSVNKEKFKQQ 371
>ref|NP_597709.2| ribonucleoprotein PTB-binding 1 [Homo sapiens].
Length = 756
Score = 55.1 bits (131), Expect = 1e-07
Identities = 32/92 (34%), Positives = 47/92 (51%)
Frame = +2
Query: 158 QARRRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKG 337
Q+R R + + + T ++ V +LPPSL + Q FG++ R L S++TG SKG
Sbjct: 132 QSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKG 191
Query: 338 YGFVEFESEDVARIAAETMNNYLFGERLLKCH 433
YGF E+ +D A A + G R L H
Sbjct: 192 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 223
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,935,495
Number of extensions: 953119
Number of successful extensions: 3377
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 3326
Number of HSP's successfully gapped: 47
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012953
(1088 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118483.1| Sus scrofa unplaced genomic scaffold ChrUScaf590 561 e-157
Sscrofa_Chr15 561 e-157
>gb|JH118483.1| Sus scrofa unplaced genomic scaffold ChrUScaf590
Length = 24079
Score = 561 bits (283), Expect = e-157
Identities = 297/299 (99%), Gaps = 2/299 (0%)
Strand = Plus / Plus
Query: 772 ccagggccccacaccagtgtgtacaccaacatttttggagaaacgaaagtcagaagtggc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10894 ccagggccccacaccagtgtgtacaccaacatttttggagaaacgaaagtcagaagtggc 10953
Query: 832 taaaatgaatgatgatgataaagatcacgaaattgttttcaagcagcccgtatctggtgc 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10954 taaaatgaatgatgatgataaagatcacgaaattgttttcaagcagcccgtatctggtgc 11013
Query: 892 aaaagaagaaacacaggagactcagatacctacaagttcaaggaaaaagagaagaaaaaa 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11014 aaaagaagaaacacaggagactcagatacctacaagttcaaggaaaaagagaagaaaaaa 11073
Query: 952 caatcagtgattctgaatgtattgtgtatagttctgaaaaatgtgattttatgatggaag 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11074 caatcagtgattctgaatgtattgtgtatagttctgaaaaatgtgattttatgatggaag 11133
Query: 1012 ctgacttctttgtattt-acgagatagaatagaatgcaaccagtaaacaagatttttgg 1069
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 11134 ctgacttctttgtatttaacgagatagaatagaatgcaaccagt-aacaagatttttgg 11191
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 180 agcaaccagagaaacaaaaacttactcctggagtaatctatgtgggccacttacctccat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589 agcaaccagagaaacaaaaacttactcctggagtaatctatgtgggccacttacctccat 5648
Query: 240 cgctatatgaaacccagatccgagcatatttctcccagtttggcactgttacaagattga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5649 cgctatatgaaacccagatccgagcatatttctcccagtttggcactgttacaagattga 5708
Query: 300 gactgtccaggagtaaaaag 319
||||||||||||||||||||
Sbjct: 5709 gactgtccaggagtaaaaag 5728
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 702 aggctttacggaagaagaagaagaaagaggccttggccgctcttaacacccctgagaaga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10151 aggctttacggaagaagaagaagaaagaggccttggccgctcttaacacccctgagaaga 10210
Query: 762 cagtggatagccagg 776
|||||||||||||||
Sbjct: 10211 cagtggatagccagg 10225
Score = 135 bits (68), Expect = 6e-29
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 cttccgctttggaaccctacaggactcgcatttccgggagctccgcgtggattaggttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3947 cttccgctttggaaccctacaggactcgcatttccgggagctccgcgtggatttggttag 4006
Query: 61 cccggtagcagg 72
||||||||||||
Sbjct: 4007 cccggtagcagg 4018
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 640 ggtcttacataaagatgaggaaaagccttcattcactggtcctcgaaattccagaaagca 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9967 ggtcttacataaagatgaggaaaagccttcattcactggtcctcgaaattccagaaagca 10026
Query: 700 ccagg 704
|||||
Sbjct: 10027 ccagg 10031
>Sscrofa_Chr15
|| Length = 157681621
Score = 561 bits (283), Expect = e-157
Identities = 297/299 (99%), Gaps = 2/299 (0%)
Strand = Plus / Plus
Query: 772 ccagggccccacaccagtgtgtacaccaacatttttggagaaacgaaagtcagaagtggc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34691609 ccagggccccacaccagtgtgtacaccaacatttttggagaaacgaaagtcagaagtggc 34691668
Query: 832 taaaatgaatgatgatgataaagatcacgaaattgttttcaagcagcccgtatctggtgc 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34691669 taaaatgaatgatgatgataaagatcacgaaattgttttcaagcagcccgtatctggtgc 34691728
Query: 892 aaaagaagaaacacaggagactcagatacctacaagttcaaggaaaaagagaagaaaaaa 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34691729 aaaagaagaaacacaggagactcagatacctacaagttcaaggaaaaagagaagaaaaaa 34691788
Query: 952 caatcagtgattctgaatgtattgtgtatagttctgaaaaatgtgattttatgatggaag 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34691789 caatcagtgattctgaatgtattgtgtatagttctgaaaaatgtgattttatgatggaag 34691848
Query: 1012 ctgacttctttgtattt-acgagatagaatagaatgcaaccagtaaacaagatttttgg 1069
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 34691849 ctgacttctttgtatttaacgagatagaatagaatgcaaccagt-aacaagatttttgg 34691906
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 429 gtcatatcataccacctgaaaaagtacatgaagaactttttagagagtggcacatgccat 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34688385 gtcatatcataccacctgaaaaagtacatgaagaactttttagagagtggcacatgccat 34688444
Query: 489 ttaaaaggccgtcgttcccggcagtgaaacgctataatcagaagcggacgcttcgacaaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34688445 ttaaaaggccgtcgttcccggcagtgaaacgctataatcagaagcggacgcttcgacaaa 34688504
Query: 549 agctgcggatggaggagagatttaaaaagaaggaaaaatctctcaggaagagattagcta 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34688505 agctgcggatggaggagagatttaaaaagaaggaaaaatctctcaggaagagattagcta 34688564
Query: 609 aaaagggaattgattataattttccttcattggt 642
||||||||||||||||||||||||||||||||||
Sbjct: 34688565 aaaagggaattgattataattttccttcattggt 34688598
Score = 335 bits (169), Expect = 3e-89
Identities = 178/181 (98%)
Strand = Plus / Plus
Query: 1 cttccgctttggaaccctacaggactcgcatttccgggagctccgcgtggattaggttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 34678355 cttccgctttggaaccctacaggactcgcatttccgggagctccgcgtggatttggttag 34678414
Query: 61 cccggtagcaggcttaatggcggctctcgctgccccggttgggccgctcttgtccctgaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 34678415 cccggtagcaggcttaatggcggctctcgctgcccaggttgggccgctcttgtccctgaa 34678474
Query: 121 tccgcaagaagatgctaagttccagaagaaggtagcgcaggctcgccgtcgcgcaaccaa 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 34678475 tccgcaagaagatgctaagttccagaagaaggtagcgctggctcgccgtcgcgcaaccaa 34678534
Query: 181 g 181
|
Sbjct: 34678535 g 34678535
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 180 agcaaccagagaaacaaaaacttactcctggagtaatctatgtgggccacttacctccat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34680030 agcaaccagagaaacaaaaacttactcctggagtaatctatgtgggccacttacctccat 34680089
Query: 240 cgctatatgaaacccagatccgagcatatttctcccagtttggcactgttacaagattga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34680090 cgctatatgaaacccagatccgagcatatttctcccagtttggcactgttacaagattga 34680149
Query: 300 gactgtccaggagtaaaaag 319
||||||||||||||||||||
Sbjct: 34680150 gactgtccaggagtaaaaag 34680169
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 318 agactggaaatagcaaaggctatggctttgtggagtttgaatctgaagatgttgccagaa 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687277 agactggaaatagcaaaggctatggctttgtggagtttgaatctgaagatgttgccagaa 34687336
Query: 378 tagctgctgaaacaatgaacaactacctttttggagaaagactcttgaagtgt 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687337 tagctgctgaaacaatgaacaactacctttttggagaaagactcttgaagtgt 34687389
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 702 aggctttacggaagaagaagaagaaagaggccttggccgctcttaacacccctgagaaga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34690866 aggctttacggaagaagaagaagaaagaggccttggccgctcttaacacccctgagaaga 34690925
Query: 762 cagtggatagccagg 776
|||||||||||||||
Sbjct: 34690926 cagtggatagccagg 34690940
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 640 ggtcttacataaagatgaggaaaagccttcattcactggtcctcgaaattccagaaagca 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34690682 ggtcttacataaagatgaggaaaagccttcattcactggtcctcgaaattccagaaagca 34690741
Query: 700 ccagg 704
|||||
Sbjct: 34690742 ccagg 34690746
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,649,318
Number of extensions: 1034
Number of successful extensions: 1034
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 12
Length of query: 1088
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1067
Effective length of database: 2,808,413,156
Effective search space: 2996576837452
Effective search space used: 2996576837452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)