Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012956
(2158 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069298.1| matrix-remodeling-associated protein 8 precu... 653 0.0
>ref|NP_001069298.1| matrix-remodeling-associated protein 8 precursor [Bos taurus].
Length = 463
Score = 653 bits (1684), Expect = 0.0
Identities = 334/463 (72%), Positives = 351/463 (75%), Gaps = 23/463 (4%)
Frame = +1
Query: 121 MELRSPVILWQLVLLQSFAXXXXXXXXXXXXXXXXXXXXXXXX---GARAVLRCQSPRMV 291
MELR+ V+LW+LVLLQS A GARAVLRCQSPRMV
Sbjct: 1 MELRAWVLLWRLVLLQSSAVLLSSGPSGPATSDRSVVSESTVSWAAGARAVLRCQSPRMV 60
Query: 292 WTQDRLHDRQRVVHWDLXXXXXXXXXXRLVDMYSAGEQRV---------------YKLRD 426
WTQDRLHDRQRVVHWDL RLVDMYS GEQRV Y+ RD
Sbjct: 61 WTQDRLHDRQRVVHWDLSGSKAGGPARRLVDMYSTGEQRVGEQRLGEQRVGEQRVYEPRD 120
Query: 427 RGRLQLPPSAFHDGNFSLLIRAVEETDEGLYTCNLHHHYCHLYESLAVQLLVTDNAQAAG 606
RGRL LPPSAFHDGNFSL IRAVEETDEGLYTCNLHHHYCHLYESLAV L VTD+ +AAG
Sbjct: 121 RGRLLLPPSAFHDGNFSLFIRAVEETDEGLYTCNLHHHYCHLYESLAVSLEVTDDPRAAG 180
Query: 607 AHWTGEKEVLVVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLD 786
AHW GEKEVL VERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLD
Sbjct: 181 AHWDGEKEVLAVERGAPALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLD 240
Query: 787 LYASGERRAYGPPFLRDRVAVGADAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHER 966
LYASGERRAYGPPFLRDRVAV ADAFARGDFSL IDP+EPADEGTYSCHLHHHYCGLHER
Sbjct: 241 LYASGERRAYGPPFLRDRVAVEADAFARGDFSLLIDPVEPADEGTYSCHLHHHYCGLHER 300
Query: 967 RIFHLRVTEPAAE--PPPRDSPGNGSSHGGAPGP---DPTLARGRSVINVIVPEGRAHFF 1131
R+FHLRVTEPAA PPPRDSPGNGSSH GAPGP DPTL RGRSVINVIVPEGRAHFF
Sbjct: 301 RVFHLRVTEPAARPPPPPRDSPGNGSSHSGAPGPGARDPTLTRGRSVINVIVPEGRAHFF 360
Query: 1132 QQLGYXXXXXXXXXXXXXXXXXXXRQRRRXXXXXXXXXXXXXXXXVNVVEFAVATGDQAL 1311
QQLGY RQRRR +N+ EFAVA+GDQ+L
Sbjct: 361 QQLGYVLATLLLFILLLITVVLATRQRRRGGYEYSNKKSKSKGKDINMAEFAVASGDQSL 420
Query: 1312 YRSENIQLDYKNNILKERAELVHSPPPPKNIDLDKEFRKEHCR 1440
YRSE+I+LDYKNNILKERAE+ HS PP KNIDLDKEFRKE+C+
Sbjct: 421 YRSEDIRLDYKNNILKERAEVAHSLPPAKNIDLDKEFRKEYCK 463
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 77,929,770
Number of extensions: 2636986
Number of successful extensions: 19082
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 18597
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 609
Effective length of database: 14,041,694
Effective search space: 8551391646
Effective search space used: 8551391646
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012956
(2158 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546712.2| PREDICTED: similar to matrix-remodelling associ... 664 0.0
>ref|XP_546712.2| PREDICTED: similar to matrix-remodelling associated 8 [Canis
familiaris].
Length = 441
Score = 664 bits (1712), Expect = 0.0
Identities = 335/443 (75%), Positives = 346/443 (78%), Gaps = 3/443 (0%)
Frame = +1
Query: 121 MELRSPVILWQLVLLQSFAXXXXXXXXXXXXXXXXXXXXXXXX---GARAVLRCQSPRMV 291
MEL+S V+LW+LVLL S A GA AVLRCQSPRMV
Sbjct: 1 MELQSQVLLWELVLLHSSAVLLSSVPSGSLPAASSVVSESTVSWAAGALAVLRCQSPRMV 60
Query: 292 WTQDRLHDRQRVVHWDLXXXXXXXXXXRLVDMYSAGEQRVYKLRDRGRLQLPPSAFHDGN 471
WTQDRLHDRQRVVHWDL RLVDMYSAGEQRVY RD GRL LPPSAFHDGN
Sbjct: 61 WTQDRLHDRQRVVHWDLSGSPAGGPARRLVDMYSAGEQRVYGPRDHGRLLLPPSAFHDGN 120
Query: 472 FSLLIRAVEETDEGLYTCNLHHHYCHLYESLAVQLLVTDNAQAAGAHWTGEKEVLVVERG 651
FSLLIRAVE DEGLYTCNLHHHYCHLYE+LAV+L VTDN Q AGAHW GEKEVLVVERG
Sbjct: 121 FSLLIRAVEYADEGLYTCNLHHHYCHLYETLAVRLEVTDNPQEAGAHWDGEKEVLVVERG 180
Query: 652 APALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFL 831
APALLTCVNR HVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFL
Sbjct: 181 APALLTCVNREHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFL 240
Query: 832 RDRVAVGADAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEPAAEPP 1011
RDRVAVG DAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEP AEPP
Sbjct: 241 RDRVAVGVDAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEPVAEPP 300
Query: 1012 PRDSPGNGSSHGGAPGPDPTLARGRSVINVIVPEGRAHFFQQLGYXXXXXXXXXXXXXXX 1191
PRDSPGNGSSH GAPGPD TL RGRSVINVIVPEGRAHFFQQLGY
Sbjct: 301 PRDSPGNGSSHSGAPGPDSTLPRGRSVINVIVPEGRAHFFQQLGYVLATLLLFILLLITV 360
Query: 1192 XXXXRQRRRXXXXXXXXXXXXXXXXVNVVEFAVATGDQALYRSENIQLDYKNNILKERAE 1371
RQRRR VN+ EFAVATGDQA+YRSE+IQLDYKNNILKERAE
Sbjct: 361 ILATRQRRR--GGYQYWDKKSGKKDVNLAEFAVATGDQAVYRSEDIQLDYKNNILKERAE 418
Query: 1372 LVHSPPPPKNIDLDKEFRKEHCR 1440
L H+P P KNIDLDK FRKE+C+
Sbjct: 419 LGHTPLPTKNIDLDKVFRKEYCK 441
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 80,287,627
Number of extensions: 2567617
Number of successful extensions: 19637
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 19108
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 609
Effective length of database: 15,207,544
Effective search space: 9261394296
Effective search space used: 9261394296
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012956
(2158 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356164.1| PREDICTED: matrix-remodeling-associated prot... 579 e-165
>ref|XP_003356164.1| PREDICTED: matrix-remodeling-associated protein 8-like [Sus scrofa].
Length = 323
Score = 579 bits (1492), Expect = e-165
Identities = 280/314 (89%), Positives = 280/314 (89%)
Frame = +1
Query: 121 MELRSPVILWQLVLLQSFAXXXXXXXXXXXXXXXXXXXXXXXXGARAVLRCQSPRMVWTQ 300
MELRSPVILWQLVLLQSFA GARAVLRCQSPRMVWTQ
Sbjct: 1 MELRSPVILWQLVLLQSFAVLLSSGLSGPDSSVVSESAVSWAAGARAVLRCQSPRMVWTQ 60
Query: 301 DRLHDRQRVVHWDLXXXXXXXXXXRLVDMYSAGEQRVYKLRDRGRLQLPPSAFHDGNFSL 480
DRLHDRQRVVHWDL RLVDMYSAGEQRVYKLRDRGRLQLPPSAFHDGNFSL
Sbjct: 61 DRLHDRQRVVHWDLSGGPAGGPAHRLVDMYSAGEQRVYKLRDRGRLQLPPSAFHDGNFSL 120
Query: 481 LIRAVEETDEGLYTCNLHHHYCHLYESLAVQLLVTDNAQAAGAHWTGEKEVLVVERGAPA 660
LIRAVEETDEGLYTCNLHHHYCHLYESLAVQLLVTDNAQAAGAHWTGEKEVLVVERGAPA
Sbjct: 121 LIRAVEETDEGLYTCNLHHHYCHLYESLAVQLLVTDNAQAAGAHWTGEKEVLVVERGAPA 180
Query: 661 LLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFLRDR 840
LLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFLRDR
Sbjct: 181 LLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFLRDR 240
Query: 841 VAVGADAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEPAAEPPPRD 1020
VAVGADAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEPAAEPPPRD
Sbjct: 241 VAVGADAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEPAAEPPPRD 300
Query: 1021 SPGNGSSHGGAPGP 1062
SPGNGSSHGGAPGP
Sbjct: 301 SPGNGSSHGGAPGP 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,701,033
Number of extensions: 1913805
Number of successful extensions: 12266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11877
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 613
Effective length of database: 8,704,850
Effective search space: 5336073050
Effective search space used: 5336073050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012956
(2158 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077225.4| matrix-remodeling-associated protein 8 precurso... 585 e-167
>ref|NP_077225.4| matrix-remodeling-associated protein 8 precursor [Mus musculus].
Length = 442
Score = 585 bits (1507), Expect = e-167
Identities = 299/443 (67%), Positives = 325/443 (73%), Gaps = 3/443 (0%)
Frame = +1
Query: 121 MELRSPVILWQLVLLQSFAXXXXXXXXXXXXXXXXXXXXXXXX--GARAVLRCQSPRMVW 294
MEL S V+LW+L+LLQS A G +AVLRCQSPRMVW
Sbjct: 1 MELLSRVLLWKLLLLQSSAVLSSGPSGTAAASSSLVSESVVSLAAGTQAVLRCQSPRMVW 60
Query: 295 TQDRLHDRQRVVHWDLXXXXXXXXXXRLVDMYSAGEQRVYKLRDRGRLQLPPSAFHDGNF 474
TQDRLHDRQRVVHWDL RLVDMYSAGEQRVY+ RDR RL L PSAFHDGNF
Sbjct: 61 TQDRLHDRQRVVHWDLSGGPGSQRR-RLVDMYSAGEQRVYEPRDRDRLLLSPSAFHDGNF 119
Query: 475 SLLIRAVEETDEGLYTCNLHHHYCHLYESLAVQLLVTDNAQAAGAHWTGEKEVLVVERGA 654
SLLIRAV+ DEG+YTCNLHHHYCHL ESLAV+L VT++ + A+W GEKEVLVV GA
Sbjct: 120 SLLIRAVDRGDEGVYTCNLHHHYCHLDESLAVRLEVTEDPLLSRAYWDGEKEVLVVAHGA 179
Query: 655 PALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFLR 834
PAL+TC+NRAHVWTDRHLEEAQQVVHWDRQ PGV HDRADRLLDLYASGERRAYGPPFLR
Sbjct: 180 PALMTCINRAHVWTDRHLEEAQQVVHWDRQLPGVSHDRADRLLDLYASGERRAYGPPFLR 239
Query: 835 DRVAVGADAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEPAAEPPP 1014
DRV+V +AFARGDFSLRID LE ADEG YSCHLHHHYCGLHERR+FHL+VTEPA EPP
Sbjct: 240 DRVSVNTNAFARGDFSLRIDELERADEGIYSCHLHHHYCGLHERRVFHLQVTEPAFEPPA 299
Query: 1015 RDSPGNGSSHGGAPGPDPTLARGRSVINVIVPEGRAHFFQQLGYXXXXXXXXXXXXXXXX 1194
R SPGNGS H AP PDPTL RG S+INVIVPE HFFQQLGY
Sbjct: 300 RASPGNGSGHSSAPSPDPTLTRGHSIINVIVPEDHTHFFQQLGYVLATLLLFILLLITVV 359
Query: 1195 XXXRQRRR-XXXXXXXXXXXXXXXXVNVVEFAVATGDQALYRSENIQLDYKNNILKERAE 1371
R R VN+VEFAVAT DQA YR+E+IQLDYKNNILKERAE
Sbjct: 360 LATRYRHSGGCKTSDKKAGKSKGKDVNMVEFAVATRDQAPYRTEDIQLDYKNNILKERAE 419
Query: 1372 LVHSPPPPKNIDLDKEFRKEHCR 1440
L HSP P K++DLDKEFRKE+C+
Sbjct: 420 LAHSPLPAKDVDLDKEFRKEYCK 442
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,713,833
Number of extensions: 2036238
Number of successful extensions: 14678
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14184
Number of HSP's successfully gapped: 2
Length of query: 719
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 610
Effective length of database: 12,343,635
Effective search space: 7529617350
Effective search space used: 7529617350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012956
(2158 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115724.1| matrix-remodeling-associated protein 8 precurso... 619 e-177
>ref|NP_115724.1| matrix-remodeling-associated protein 8 precursor [Homo sapiens].
Length = 442
Score = 619 bits (1597), Expect = e-177
Identities = 314/443 (70%), Positives = 333/443 (75%), Gaps = 3/443 (0%)
Frame = +1
Query: 121 MELRSPVILWQLVLLQSFAXXXXXXXXXXXXXXXXXXXXXXXX---GARAVLRCQSPRMV 291
M L S ++LW+LVLLQS A GARAVLRCQSPRMV
Sbjct: 1 MALPSRILLWKLVLLQSSAVLLHSGSSVPAAAGSSVVSESAVSWEAGARAVLRCQSPRMV 60
Query: 292 WTQDRLHDRQRVVHWDLXXXXXXXXXXRLVDMYSAGEQRVYKLRDRGRLQLPPSAFHDGN 471
WTQDRLHDRQRV+HWDL RL+D+YSAGEQRVY+ RDRGRL+L SAF DGN
Sbjct: 61 WTQDRLHDRQRVLHWDLRGPGGGPAR-RLLDLYSAGEQRVYEARDRGRLELSASAFDDGN 119
Query: 472 FSLLIRAVEETDEGLYTCNLHHHYCHLYESLAVQLLVTDNAQAAGAHWTGEKEVLVVERG 651
FSLLIRAVEETD GLYTCNLHHHYCHLYESLAV+L VTD A A+W GEKEVL V RG
Sbjct: 120 FSLLIRAVEETDAGLYTCNLHHHYCHLYESLAVRLEVTDGPPATPAYWDGEKEVLAVARG 179
Query: 652 APALLTCVNRAHVWTDRHLEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPPFL 831
APALLTCVNR HVWTDRH+EEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGP FL
Sbjct: 180 APALLTCVNRGHVWTDRHVEEAQQVVHWDRQPPGVPHDRADRLLDLYASGERRAYGPLFL 239
Query: 832 RDRVAVGADAFARGDFSLRIDPLEPADEGTYSCHLHHHYCGLHERRIFHLRVTEPAAEPP 1011
RDRVAVGADAF RGDFSLRI+PLE ADEGTYSCHLHHHYCGLHERR+FHL V EP AEPP
Sbjct: 240 RDRVAVGADAFERGDFSLRIEPLEVADEGTYSCHLHHHYCGLHERRVFHLTVAEPHAEPP 299
Query: 1012 PRDSPGNGSSHGGAPGPDPTLARGRSVINVIVPEGRAHFFQQLGYXXXXXXXXXXXXXXX 1191
PR SPGNGSSH GAPGPDPTLARG +VINVIVPE RAHFFQQLGY
Sbjct: 300 PRGSPGNGSSHSGAPGPDPTLARGHNVINVIVPESRAHFFQQLGYVLATLLLFILLLVTV 359
Query: 1192 XXXXRQRRRXXXXXXXXXXXXXXXXVNVVEFAVATGDQALYRSENIQLDYKNNILKERAE 1371
R+RR VN+ EFAVA GDQ LYRSE+IQLDYKNNILKERAE
Sbjct: 360 LLAARRRRGGYEYSDQKSGKSKGKDVNLAEFAVAAGDQMLYRSEDIQLDYKNNILKERAE 419
Query: 1372 LVHSPPPPKNIDLDKEFRKEHCR 1440
L HSP P K IDLDK FRKE+C+
Sbjct: 420 LAHSPLPAKYIDLDKGFRKENCK 442
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,456,654
Number of extensions: 2480063
Number of successful extensions: 18754
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 18169
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 609
Effective length of database: 14,671,124
Effective search space: 8934714516
Effective search space used: 8934714516
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012956
(2158 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1227 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1227 bits (619), Expect = 0.0
Identities = 619/619 (100%)
Strand = Plus / Minus
Query: 1416 agaattcaggaaggagcactgcagataaggtgatcctgggctcctggctgggccagcagc 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130377 agaattcaggaaggagcactgcagataaggtgatcctgggctcctggctgggccagcagc 58130318
Query: 1476 tctgccaactcctgtctgtccacctcagaggactcctgaccccatgcctggccccgcttc 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130317 tctgccaactcctgtctgtccacctcagaggactcctgaccccatgcctggccccgcttc 58130258
Query: 1536 cagcggctggtcccgctgtcctggaatttggctcggactcgtgccgaaggaggctgcttc 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130257 cagcggctggtcccgctgtcctggaatttggctcggactcgtgccgaaggaggctgcttc 58130198
Query: 1596 cagacccctctcctcacgcccaagagtgggctccttgggactctgccagggctgcagcca 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130197 cagacccctctcctcacgcccaagagtgggctccttgggactctgccagggctgcagcca 58130138
Query: 1656 tgccccctgtggccgcccttggcccatgcccttccctcctggcacagcctagaccccact 1715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130137 tgccccctgtggccgcccttggcccatgcccttccctcctggcacagcctagaccccact 58130078
Query: 1716 gatgtgcaccaaatccccaggctctcctggcctctgcctgcagagttggggaagggcagg 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130077 gatgtgcaccaaatccccaggctctcctggcctctgcctgcagagttggggaagggcagg 58130018
Query: 1776 aaggcactcttggagggggtttggtggggattcctggagctggcgtcagccgcagggctg 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130017 aaggcactcttggagggggtttggtggggattcctggagctggcgtcagccgcagggctg 58129958
Query: 1836 gcactcccaccccttcctttaccagccaggctgccctgccgagggttctgcatgggatga 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58129957 gcactcccaccccttcctttaccagccaggctgccctgccgagggttctgcatgggatga 58129898
Query: 1896 gggctgtgcaccccgggtggtgttcctctgcactgtgtccagccacctggggctgccctg 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58129897 gggctgtgcaccccgggtggtgttcctctgcactgtgtccagccacctggggctgccctg 58129838
Query: 1956 gggccccgtctctgcctcccaccctgccccagccctgtttccatcaggctgccttgacag 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58129837 gggccccgtctctgcctcccaccctgccccagccctgtttccatcaggctgccttgacag 58129778
Query: 2016 tcactgggctccacgtgac 2034
|||||||||||||||||||
Sbjct: 58129777 tcactgggctccacgtgac 58129759
Score = 928 bits (468), Expect = 0.0
Identities = 471/472 (99%)
Strand = Plus / Minus
Query: 592 gcccaggccgccggcgcgcactggacgggcgagaaggaggtgctggtagtggagcgcggc 651
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 58132120 gcccaggccgccggcgcgcactggacgggcgagaaagaggtgctggtagtggagcgcggc 58132061
Query: 652 gcgcccgcgctgctgacctgcgtgaaccgcgcgcacgtgtggaccgaccggcacctggag 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132060 gcgcccgcgctgctgacctgcgtgaaccgcgcgcacgtgtggaccgaccggcacctggag 58132001
Query: 712 gaggcgcagcaggtggtgcactgggaccggcagccgcccggggtgccacacgaccgcgcc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132000 gaggcgcagcaggtggtgcactgggaccggcagccgcccggggtgccacacgaccgcgcc 58131941
Query: 772 gaccgcctgctcgacctgtacgcgtcgggtgagcgccgcgcctacgggccgcccttcctg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131940 gaccgcctgctcgacctgtacgcgtcgggtgagcgccgcgcctacgggccgcccttcctg 58131881
Query: 832 cgcgaccgcgtggcagtcggggcggacgccttcgcgcgcggcgacttctcgctgcgcatc 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131880 cgcgaccgcgtggcagtcggggcggacgccttcgcgcgcggcgacttctcgctgcgcatc 58131821
Query: 892 gaccctctggagcccgcagacgaaggcacctactcctgccacctgcaccaccactactgc 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131820 gaccctctggagcccgcagacgaaggcacctactcctgccacctgcaccaccactactgc 58131761
Query: 952 ggcctgcacgagcgccgcatcttccacctgagagttaccgagcccgccgccgagccgccc 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131760 ggcctgcacgagcgccgcatcttccacctgagagttaccgagcccgccgccgagccgccc 58131701
Query: 1012 ccgcgggactcgccgggcaacggctccagccacggcggcgcgcccggcccag 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131700 ccgcgggactcgccgggcaacggctccagccacggcggcgcgcccggcccag 58131649
Score = 337 bits (170), Expect = 2e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 1 aggcccagggctccgtgatgtcaaggcgggtgctgaggaaggggaggaggaggggcccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58134206 aggcccagggctccgtgatgtcaaggcgggtgctgaggaaggggaggaggaggggcccgg 58134147
Query: 61 ctgtttttcgggagagttagagctcgggagacaaagcagctggcgggccaggcaggcgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58134146 ctgtttttcgggagagttagagctcgggagacaaagcagctggcgggccaggcaggcgcc 58134087
Query: 121 atggagctgcggtccccggtcattctctggcaacttgtgcttctgcagag 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58134086 atggagctgcggtccccggtcattctctggcaacttgtgcttctgcagag 58134037
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 1061 cagaccccacgttggcacgcggccgcagcgtcatcaacgtcatcgtccccgagggccggg 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131444 cagaccccacgttggcacgcggccgcagcgtcatcaacgtcatcgtccccgagggccggg 58131385
Query: 1121 cacacttcttccagcagctgggctacgtactggccaccctgctgctcttcattctgctgc 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131384 cacacttcttccagcagctgggctacgtactggccaccctgctgctcttcattctgctgc 58131325
Query: 1181 tcatcactgtggtcctggccacccgacagcgccgccgcggagg 1223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131324 tcatcactgtggtcctggccacccgacagcgccgccgcggagg 58131282
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 191 caggcctgtctgggccggacagctcggtggtgtctgagtccgcagtgagctgggcagcgg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132718 caggcctgtctgggccggacagctcggtggtgtctgagtccgcagtgagctgggcagcgg 58132659
Query: 251 gagcccgcgccgtgctgcgctgccagagcccgcgcatggtgtggacccaagaccggctgc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132658 gagcccgcgccgtgctgcgctgccagagcccgcgcatggtgtggacccaagaccggctgc 58132599
Query: 311 acgaccgccagcgtgtggtccactgggacctca 343
|||||||||||||||||||||||||||||||||
Sbjct: 58132598 acgaccgccagcgtgtggtccactgggacctca 58132566
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 371 accgactcgtggacatgtactcggcgggcgagcagcgcgtgtacaagctgcgcgaccgcg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132538 accgactcgtggacatgtactcggcgggcgagcagcgcgtgtacaagctgcgcgaccgcg 58132479
Query: 431 ggcgcttgcagctgcctccctccgccttccacgacggcaacttctcgctgctcatccgcg 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132478 ggcgcttgcagctgcctccctccgccttccacgacggcaacttctcgctgctcatccgcg 58132419
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 490 gcggtggaggagacagacgaggggctgtacacctgcaacctgcatcaccattactgtcac 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132313 gcggtggaggagacagacgaggggctgtacacctgcaacctgcatcaccattactgtcac 58132254
Query: 550 ctctacgagagcctggccgtgcaactcctggtcaccgacaacg 592
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58132253 ctctacgagagcctggccgtgcaactcctggtcaccgacaacg 58132211
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 1259 ggaaggacgtgaacgtggtggaatttgctgtggccacaggggatcaggctctttacagga 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131000 ggaaggacgtgaacgtggtggaatttgctgtggccacaggggatcaggctctttacagga 58130941
Query: 1319 gtgagaacatccaactcg 1336
||||||||||||||||||
Sbjct: 58130940 gtgagaacatccaactcg 58130923
Score = 93.7 bits (47), Expect = 4e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 1336 gattacaaaaacaacatcctcaaggagagggccgagctggtccacag 1382
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58130621 gattacaaaaacaacatcctcaaggagagggccgagctggtccacag 58130575
Score = 79.8 bits (40), Expect = 6e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 1221 aggctatgaatactccgacaagaagtccaagtcaaagggg 1260
||||||||||||||||||||||||||||||||||||||||
Sbjct: 58131118 aggctatgaatactccgacaagaagtccaagtcaaagggg 58131079
Score = 73.8 bits (37), Expect = 4e-10
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1340 acaaaaacaacatcctcaaggagagggccgagctggtcca 1379
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 58130668 acaaaaacaacatcntcaaggagagggccgagctggtcca 58130707
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,395,312
Number of extensions: 486
Number of successful extensions: 486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 11
Length of query: 2158
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2136
Effective length of database: 2,808,408,574
Effective search space: 5998760714064
Effective search space used: 5998760714064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)