Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012963
(1264 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540898.2| PREDICTED: similar to solute carrier family 3 (... 487 e-137
Alignment gi|XP_855564.1| PREDICTED: amino acid transporter SLC3A1 [Canis... 77 5e-14
Alignment gi|NP_001003109.1| neutral and basic amino acid transport prote... 74 2e-13
>ref|XP_540898.2| PREDICTED: similar to solute carrier family 3 (activators of dibasic
and neutral amino acid transport), member 2 isoform a
[Canis familiaris].
Length = 569
Score = 487 bits (1253), Expect = e-137
Identities = 265/422 (62%), Positives = 291/422 (68%), Gaps = 3/422 (0%)
Frame = +1
Query: 7 VAEAARNPAALGGRSGTGRSGQVGVQPLADRRLRRVAGSAGTMSQDTEVDMKEVELNELE 186
VAEAAR GR+ R+ Q L +AG MSQDTEVD+KEVELNELE
Sbjct: 5 VAEAARGGVVRRGRADAERAEQESSHQL----------TAGAMSQDTEVDLKEVELNELE 54
Query: 187 PEKQPMNXXXXXXXXXXXX--PEKNGLVKIKVXXXXXXXXXX-KFTGLSKEELLKVAGSP 357
PEKQPMN EKNGLVKIKV KFTGLSKEELLKVAGSP
Sbjct: 55 PEKQPMNAASGAAMAVVVAGGAEKNGLVKIKVADDEAEAAAAAKFTGLSKEELLKVAGSP 114
Query: 358 GWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGR 537
GWVRTR VVIIV+APRCRELPAQSWWHKGALYRIGDLQAFQG
Sbjct: 115 GWVRTRWALLVLFWLGWLGMLAGAVVIIVRAPRCRELPAQSWWHKGALYRIGDLQAFQGP 174
Query: 538 DAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQS 717
G L LKGHLDYLSTLKVKGFVLGPIH++QKDDL+GT+LEQIDP FGSKEDFD+LLQS
Sbjct: 175 RGGGLVGLKGHLDYLSTLKVKGFVLGPIHRNQKDDLSGTNLEQIDPTFGSKEDFDNLLQS 234
Query: 718 AKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVGDLPG 897
AKKKSIRVILDLTPNYKGQ+SWF T++D VAAKMK ALSFWL+AGVDGFQVR+V +L
Sbjct: 235 AKKKSIRVILDLTPNYKGQDSWFLPTEIDAVAAKMKFALSFWLRAGVDGFQVRNVENLTD 294
Query: 898 ASSFLAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXXXPTRDXXXXXXXXXXXXFTGEQT 1077
AS +LAEWQN+TKSFSEDRLLIAGT+ T+D TG T
Sbjct: 295 ASLYLAEWQNVTKSFSEDRLLIAGTESSDLQQILSLLGSTKDLLLTSSYLSSPDITGRHT 354
Query: 1078 SFLVTQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXXXXXXXXXXPGTPMFTYGNEIGLE 1257
FLVTQYLNAT +RWC+WSLSQAG L S VP+H PGTP+F+YG+EIGLE
Sbjct: 355 EFLVTQYLNATDNRWCSWSLSQAGFLTSFVPAHLLRLYQLLLFTLPGTPVFSYGDEIGLE 414
Query: 1258 EA 1263
A
Sbjct: 415 AA 416
>ref|XP_855564.1| PREDICTED: amino acid transporter SLC3A1 [Canis familiaris].
Length = 700
Score = 76.6 bits (187), Expect = 5e-14
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 6/209 (2%)
Frame = +1
Query: 178 ELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXXKFTGLSKEELLKVAGSP 357
E EPE +P P G + + + G+ KE L + +
Sbjct: 36 EPEPEPEPEPEPERARGPASSPPCPGGAAGLGLGLGLGLGAAGPYAGMPKEVLFQFSRRA 95
Query: 358 GWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGR 537
+ R + II +PRC + WW G +YRI ++F+
Sbjct: 96 RYRAPREALFWLTVASVLALTGATIAIIAVSPRCLD-----WWQAGPVYRIYP-RSFRDS 149
Query: 538 DA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG--TDLEQIDPAFGSKEDFD 702
DA GDL ++ LDY++TL +K + +K D D IDP FG+ +DF+
Sbjct: 150 DADGNGDLKGIQEKLDYITTLNIKTIWITSFYKSSLKDFRYGIEDFRDIDPIFGTMKDFE 209
Query: 703 SLLQSAKKKSIRVILDLTPNY-KGQNSWF 786
+LL + K +++I+D PN+ +++WF
Sbjct: 210 NLLAAIHDKGLKLIIDFIPNHTSDKHAWF 238
>ref|NP_001003109.1| neutral and basic amino acid transport protein rBAT [Canis lupus
familiaris].
Length = 700
Score = 74.3 bits (181), Expect = 2e-13
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Frame = +1
Query: 310 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 489
+ G+ KE L + + + R + II +PRC + WW
Sbjct: 80 YAGMPKEVLFQFSRRARYRAPREALFWLTVASVLALTGATIAIIAVSPRCLD-----WWQ 134
Query: 490 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG--T 654
G +YRI ++F+ DA GDL ++ LDY++TL +K + +K D
Sbjct: 135 AGPVYRIYP-RSFRDSDADGNGDLKGIQEKLDYITTLNIKTIWITSFYKSSLKDFRYGIE 193
Query: 655 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWF 786
D IDP FG+ +DF++LL + K +++I+D PN+ +++WF
Sbjct: 194 DFRDIDPIFGTMKDFENLLAAIHDKGLKLIIDFIPNHTSDKHAWF 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,227,372
Number of extensions: 1544403
Number of successful extensions: 7764
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7694
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012963
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012963
(1264 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019659.2| solute carrier family 3, member 2 [Bos tauru... 470 e-132
Alignment gi|NP_001029805.1| neutral and basic amino acid transport prote... 70 3e-12
>ref|NP_001019659.2| solute carrier family 3, member 2 [Bos taurus].
Length = 572
Score = 470 bits (1210), Expect = e-132
Identities = 251/385 (65%), Positives = 271/385 (70%), Gaps = 3/385 (0%)
Frame = +1
Query: 118 GSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXX--PEKNGLVKIKVXXXXX 291
G +GTMSQDTEVDMKEVELNELEPEKQPMN EKNGLVKIKV
Sbjct: 35 GDSGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAMAVVVAGGTEKNGLVKIKVADDEA 94
Query: 292 XXXXX-KFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCREL 468
KFTGLSKEELLKVAGSP WVRTR VVIIVQAPRCREL
Sbjct: 95 DAAAEAKFTGLSKEELLKVAGSPAWVRTRWALLLLFWLGWLGMLAGAVVIIVQAPRCREL 154
Query: 469 PAQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLA 648
P Q WWHKGALYRIGDL+AF G++AG+LA LK +DYLSTLKVKGFVLGPIHK+Q+DDL
Sbjct: 155 PEQRWWHKGALYRIGDLRAFLGQEAGNLADLKERMDYLSTLKVKGFVLGPIHKNQEDDLT 214
Query: 649 GTDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKE 828
T+LEQIDP FGSKEDF+SLL SAKKKSIRVILDLTPNYKGQN WF S Q+DTVA KMKE
Sbjct: 215 ETNLEQIDPIFGSKEDFESLLHSAKKKSIRVILDLTPNYKGQNPWFQSIQIDTVAIKMKE 274
Query: 829 ALSFWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXX 1008
AL FWLQ GVDGFQVRDV +L SSFLAEWQN+TKS SEDRLLIAGTD
Sbjct: 275 ALRFWLQTGVDGFQVRDVQNLTNPSSFLAEWQNITKSVSEDRLLIAGTDSSDLQQILRLL 334
Query: 1009 XPTRDXXXXXXXXXXXXFTGEQTSFLVTQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXX 1188
PTRD TG T+FLVTQYL+A GS WC+WS+SQAGLL S V
Sbjct: 335 EPTRDLLLTSSYLSHSSLTGNHTNFLVTQYLDAFGSNWCSWSVSQAGLLTSFVSPQLLRL 394
Query: 1189 XXXXXXXXPGTPMFTYGNEIGLEEA 1263
PGTP+F+YG+EIGLE A
Sbjct: 395 YQLLFFTLPGTPVFSYGDEIGLEGA 419
>ref|NP_001029805.1| neutral and basic amino acid transport protein rBAT [Bos taurus].
Length = 685
Score = 70.5 bits (171), Expect = 3e-12
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
Frame = +1
Query: 310 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 489
+ G+ KE L + +G + R + II +P+C + WW
Sbjct: 65 YAGMPKEVLFQFSGQACYRIPREVLFWLTVASVLVLIAATIAIIAISPKCLD-----WWQ 119
Query: 490 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG--T 654
G +Y+I ++F+ + GDL ++ LDY++TL +K + +K D
Sbjct: 120 AGPMYQIYP-RSFRDSNKDGDGDLKGIQDKLDYITTLNIKTVWITSFYKSSLKDFRHGVE 178
Query: 655 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQVDT 807
D +IDP FG+ +DF++L+ + K +++I+D PN+ +++WF ++ T
Sbjct: 179 DFREIDPIFGTMKDFENLVAAIHDKGLKLIIDFIPNHTSDKHAWFQWSRNQT 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,974,127
Number of extensions: 1496827
Number of successful extensions: 7847
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7695
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012963
(1264 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353857.1| PREDICTED: 4F2 cell-surface antigen heavy ch... 577 e-165
Alignment gi|XP_003361866.1| PREDICTED: 4F2 cell-surface antigen heavy ch... 369 e-102
Alignment gi|NP_001116514.1| neutral and basic amino acid transport prote... 74 2e-13
>ref|XP_003353857.1| PREDICTED: 4F2 cell-surface antigen heavy chain [Sus scrofa].
Length = 563
Score = 577 bits (1487), Expect = e-165
Identities = 297/382 (77%), Positives = 305/382 (79%)
Frame = +1
Query: 118 GSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXX 297
G++GTMSQDTEVDMKEVELNELEPEKQPMN PEKNGLVKIKV
Sbjct: 35 GNSGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAVVVSGGPEKNGLVKIKVADDEADA 94
Query: 298 XXXKFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQ 477
KFTGLSKEELLKVAGSPGWVRTR VVIIVQAPRCRELPAQ
Sbjct: 95 AAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVQAPRCRELPAQ 154
Query: 478 SWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTD 657
SWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTD
Sbjct: 155 SWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTD 214
Query: 658 LEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALS 837
LEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALS
Sbjct: 215 LEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALS 274
Query: 838 FWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXXXPT 1017
FWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTD PT
Sbjct: 275 FWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTDSSDLQQILSLLEPT 334
Query: 1018 RDXXXXXXXXXXXXFTGEQTSFLVTQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXXXXX 1197
+D FTG+QTSFLVTQYLNATGSRWC+WSLSQAGLL SSVPSH
Sbjct: 335 KDLLLTSSYLSNSSFTGKQTSFLVTQYLNATGSRWCSWSLSQAGLLTSSVPSHLLRLYQL 394
Query: 1198 XXXXXPGTPMFTYGNEIGLEEA 1263
PGTP+F+YG+EIGLEEA
Sbjct: 395 LLFTLPGTPVFSYGDEIGLEEA 416
>ref|XP_003361866.1| PREDICTED: 4F2 cell-surface antigen heavy chain-like, partial [Sus
scrofa].
Length = 427
Score = 369 bits (947), Expect = e-102
Identities = 186/238 (78%), Positives = 195/238 (81%)
Frame = +1
Query: 550 LASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKK 729
++ LKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKK
Sbjct: 74 ISGLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKK 133
Query: 730 SIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVGDLPGASSF 909
SIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVGDLPGASSF
Sbjct: 134 SIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVGDLPGASSF 193
Query: 910 LAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXXXPTRDXXXXXXXXXXXXFTGEQTSFLV 1089
LAEWQNLTKSFSEDR + D PT+D FTG+QTSFLV
Sbjct: 194 LAEWQNLTKSFSEDRWVXXXXDSSDLQQILSLLEPTKDLLLTSSYLSNSSFTGKQTSFLV 253
Query: 1090 TQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXXXXXXXXXXPGTPMFTYGNEIGLEEA 1263
TQYLNATGSRWC+WSLSQAGLL SSVPSH PGTP+F+YG+EIGLEEA
Sbjct: 254 TQYLNATGSRWCSWSLSQAGLLTSSVPSHLLRLYQLLLLTLPGTPVFSYGDEIGLEEA 311
Score = 56.6 bits (135), Expect = 3e-08
Identities = 37/82 (45%), Positives = 39/82 (47%)
Frame = +1
Query: 115 AGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXX 294
AGSAGTMSQDTEVDMKE PEKNGLVKIKV
Sbjct: 22 AGSAGTMSQDTEVDMKEX------------------------GPEKNGLVKIKVADDEAD 57
Query: 295 XXXXKFTGLSKEELLKVAGSPG 360
KFTGLSK ++G G
Sbjct: 58 AAAAKFTGLSKXICFSISGLKG 79
>ref|NP_001116514.1| neutral and basic amino acid transport protein rBAT [Sus scrofa].
Length = 682
Score = 73.6 bits (179), Expect = 2e-13
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
Frame = +1
Query: 310 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 489
+ G+ KE L + +G + R + II +P+C + WW
Sbjct: 62 YAGMPKEVLFQFSGQARYRVPREVLFWLTVASVLALIAATISIIAISPKCLD-----WWQ 116
Query: 490 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDL--AGT 654
G +Y+I ++F+ D GDL ++ LDYL+TL +K + +K D
Sbjct: 117 AGPMYQIYP-RSFKDSDKDGNGDLKGIQDKLDYLTTLNIKTVWITSFYKSSLKDFRYGVE 175
Query: 655 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQVDT 807
D +IDP FG+ +DF++L+ + K +++I+D PN+ +++WF ++ T
Sbjct: 176 DFREIDPIFGTMKDFENLVAAIHDKGLKLIIDFIPNHTSDKHAWFQLSRTRT 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,670,414
Number of extensions: 969481
Number of successful extensions: 5300
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5231
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012963
(1264 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154885.1| 4F2 cell-surface antigen heavy chain isoform... 453 e-127
Alignment gi|NP_032603.3| 4F2 cell-surface antigen heavy chain isoform b ... 444 e-125
Alignment gi|NP_033231.2| solute carrier family 3, member 1 [Mus musculus]. 75 8e-14
>ref|NP_001154885.1| 4F2 cell-surface antigen heavy chain isoform a [Mus musculus].
Length = 565
Score = 453 bits (1166), Expect = e-127
Identities = 241/400 (60%), Positives = 274/400 (68%)
Frame = +1
Query: 64 SGQVGVQPLADRRLRRVAGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXX 243
S Q G+ D ++ AG +GTMSQDTEVDMK+VELNELEPEKQPMN
Sbjct: 21 SAQTGL----DVQVVSAAGDSGTMSQDTEVDMKDVELNELEPEKQPMNAADGAAAG---- 72
Query: 244 PEKNGLVKIKVXXXXXXXXXXKFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXX 423
EKNGLVKIKV KFTGLSKEELLKVAGSPGWVRTR
Sbjct: 73 -EKNGLVKIKVAEDETEAGV-KFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLA 130
Query: 424 XXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKG 603
VVIIV+APRCRELP Q WWHKGALYRIGDLQAF GRDAG +A LK HL+YLSTLKVKG
Sbjct: 131 GAVVIIVRAPRCRELPVQRWWHKGALYRIGDLQAFVGRDAGGIAGLKSHLEYLSTLKVKG 190
Query: 604 FVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSW 783
VLGPIHK+QKD++ TDL+QI+P GS+EDF LLQSAKKKSI +ILDLTPNY+GQN+W
Sbjct: 191 LVLGPIHKNQKDEINETDLKQINPTLGSQEDFKDLLQSAKKKSIHIILDLTPNYQGQNAW 250
Query: 784 FDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLI 963
F Q D VA KMKEALS WLQ GVDGFQ RDVG L A +LAEWQN+TK+ SEDRLLI
Sbjct: 251 FLPAQADIVATKMKEALSSWLQDGVDGFQFRDVGKLMNAPLYLAEWQNITKNLSEDRLLI 310
Query: 964 AGTDXXXXXXXXXXXXPTRDXXXXXXXXXXXXFTGEQTSFLVTQYLNATGSRWCTWSLSQ 1143
AGT+ T D FTGE+T LVT++LNATGS+WC+WS+SQ
Sbjct: 311 AGTESSDLQQIVNILESTSDLLLTSSYLSNSTFTGERTESLVTRFLNATGSQWCSWSVSQ 370
Query: 1144 AGLLDSSVPSHXXXXXXXXXXXXPGTPMFTYGNEIGLEEA 1263
AGLL +P H PGTP+F+YG+E+GL+ A
Sbjct: 371 AGLLADFIPDHLLRLYQLLLFTLPGTPVFSYGDELGLQGA 410
>ref|NP_032603.3| 4F2 cell-surface antigen heavy chain isoform b [Mus musculus].
Length = 526
Score = 444 bits (1142), Expect = e-125
Identities = 233/377 (61%), Positives = 262/377 (69%)
Frame = +1
Query: 133 MSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXXKF 312
MSQDTEVDMK+VELNELEPEKQPMN EKNGLVKIKV KF
Sbjct: 1 MSQDTEVDMKDVELNELEPEKQPMNAADGAAAG-----EKNGLVKIKVAEDETEAGV-KF 54
Query: 313 TGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHK 492
TGLSKEELLKVAGSPGWVRTR VVIIV+APRCRELP Q WWHK
Sbjct: 55 TGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELPVQRWWHK 114
Query: 493 GALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQID 672
GALYRIGDLQAF GRDAG +A LK HL+YLSTLKVKG VLGPIHK+QKD++ TDL+QI+
Sbjct: 115 GALYRIGDLQAFVGRDAGGIAGLKSHLEYLSTLKVKGLVLGPIHKNQKDEINETDLKQIN 174
Query: 673 PAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQA 852
P GS+EDF LLQSAKKKSI +ILDLTPNY+GQN+WF Q D VA KMKEALS WLQ
Sbjct: 175 PTLGSQEDFKDLLQSAKKKSIHIILDLTPNYQGQNAWFLPAQADIVATKMKEALSSWLQD 234
Query: 853 GVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXXXPTRDXXX 1032
GVDGFQ RDVG L A +LAEWQN+TK+ SEDRLLIAGT+ T D
Sbjct: 235 GVDGFQFRDVGKLMNAPLYLAEWQNITKNLSEDRLLIAGTESSDLQQIVNILESTSDLLL 294
Query: 1033 XXXXXXXXXFTGEQTSFLVTQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXXXXXXXXXX 1212
FTGE+T LVT++LNATGS+WC+WS+SQAGLL +P H
Sbjct: 295 TSSYLSNSTFTGERTESLVTRFLNATGSQWCSWSVSQAGLLADFIPDHLLRLYQLLLFTL 354
Query: 1213 PGTPMFTYGNEIGLEEA 1263
PGTP+F+YG+E+GL+ A
Sbjct: 355 PGTPVFSYGDELGLQGA 371
>ref|NP_033231.2| solute carrier family 3, member 1 [Mus musculus].
Length = 685
Score = 75.5 bits (184), Expect = 8e-14
Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Frame = +1
Query: 310 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 489
+ G+ KE L + +G + R + IIV +P+C + WW
Sbjct: 64 YAGMPKEVLFQFSGQARYRVPREILFWLTVVSVFLLIGATIAIIVISPKCLD-----WWQ 118
Query: 490 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDL--AGT 654
G +Y+I ++F+ D GDL ++ LDY++ L +K + +K D A
Sbjct: 119 AGPIYQIYP-RSFKDSDKDGNGDLKGIQEKLDYITALNIKTLWITSFYKSSLKDFRYAVE 177
Query: 655 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQ 798
D ++IDP FG+ +DF++L+ + K +++I+D PN+ ++ WF S++
Sbjct: 178 DFKEIDPIFGTMKDFENLVAAIHDKGLKLIIDFIPNHTSDKHPWFQSSR 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,994,245
Number of extensions: 1236846
Number of successful extensions: 6473
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6277
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012963
(1264 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012680.1| 4F2 cell-surface antigen heavy chain isoform... 473 e-133
Alignment gi|NP_001012682.1| 4F2 cell-surface antigen heavy chain isoform... 473 e-133
Alignment gi|NP_002385.3| 4F2 cell-surface antigen heavy chain isoform c ... 472 e-133
Alignment gi|NP_001013269.1| 4F2 cell-surface antigen heavy chain isoform... 466 e-131
Alignment gi|NP_000332.2| neutral and basic amino acid transport protein ... 71 2e-12
>ref|NP_001012680.1| 4F2 cell-surface antigen heavy chain isoform b [Homo sapiens].
Length = 631
Score = 473 bits (1218), Expect = e-133
Identities = 254/384 (66%), Positives = 276/384 (71%), Gaps = 1/384 (0%)
Frame = +1
Query: 115 AGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXX 294
AG GTMSQDTEVDMKEVELNELEPEKQPMN EKNGLVKIKV
Sbjct: 97 AGITGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAMSLAGA-EKNGLVKIKVAEDEAE 155
Query: 295 XXXX-KFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELP 471
KFTGLSKEELLKVAGSPGWVRTR VVIIV+APRCRELP
Sbjct: 156 AAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELP 215
Query: 472 AQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAG 651
AQ WWH GALYRIGDLQAFQG AG+LA LKG LDYLS+LKVKG VLGPIHK+QKDD+A
Sbjct: 216 AQKWWHTGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQ 275
Query: 652 TDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEA 831
TDL QIDP FGSKEDFDSLLQSAKKKSIRVILDLTPNY+G+NSWF STQVDTVA K+K+A
Sbjct: 276 TDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGENSWF-STQVDTVATKVKDA 334
Query: 832 LSFWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXXX 1011
L FWLQAGVDGFQVRD+ +L ASSFLAEWQN+TK FSEDRLLIAGT+
Sbjct: 335 LEFWLQAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLE 394
Query: 1012 PTRDXXXXXXXXXXXXFTGEQTSFLVTQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXXX 1191
+D TGE T LVTQYLNATG+RWC+WSLSQA LL S +P+
Sbjct: 395 SNKDLLLTSSYLSDSGSTGEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQLLRLY 454
Query: 1192 XXXXXXXPGTPMFTYGNEIGLEEA 1263
PGTP+F+YG+EIGL+ A
Sbjct: 455 QLMLFTLPGTPVFSYGDEIGLDAA 478
>ref|NP_001012682.1| 4F2 cell-surface antigen heavy chain isoform e [Homo sapiens].
Length = 568
Score = 473 bits (1217), Expect = e-133
Identities = 257/403 (63%), Positives = 282/403 (69%), Gaps = 1/403 (0%)
Frame = +1
Query: 58 GRSGQVGVQPLADRRLRRVAGSAGTMSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXX 237
G + GVQ L+ +GTMSQDTEVDMKEVELNELEPEKQPMN
Sbjct: 21 GSHSEAGVQGLS------AGDDSGTMSQDTEVDMKEVELNELEPEKQPMNAASGAAMSLA 74
Query: 238 XXPEKNGLVKIKVXXXXXXXXXX-KFTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXX 414
EKNGLVKIKV KFTGLSKEELLKVAGSPGWVRTR
Sbjct: 75 GA-EKNGLVKIKVAEDEAEAAAAAKFTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLG 133
Query: 415 XXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLK 594
VVIIV+APRCRELPAQ WWH GALYRIGDLQAFQG AG+LA LKG LDYLS+LK
Sbjct: 134 MLAGAVVIIVRAPRCRELPAQKWWHTGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLK 193
Query: 595 VKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQ 774
VKG VLGPIHK+QKDD+A TDL QIDP FGSKEDFDSLLQSAKKKSIRVILDLTPNY+G+
Sbjct: 194 VKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGE 253
Query: 775 NSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDR 954
NSWF STQVDTVA K+K+AL FWLQAGVDGFQVRD+ +L ASSFLAEWQN+TK FSEDR
Sbjct: 254 NSWF-STQVDTVATKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDR 312
Query: 955 LLIAGTDXXXXXXXXXXXXPTRDXXXXXXXXXXXXFTGEQTSFLVTQYLNATGSRWCTWS 1134
LLIAGT+ +D TGE T LVTQYLNATG+RWC+WS
Sbjct: 313 LLIAGTNSSDLQQILSLLESNKDLLLTSSYLSDSGSTGEHTKSLVTQYLNATGNRWCSWS 372
Query: 1135 LSQAGLLDSSVPSHXXXXXXXXXXXXPGTPMFTYGNEIGLEEA 1263
LSQA LL S +P+ PGTP+F+YG+EIGL+ A
Sbjct: 373 LSQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDEIGLDAA 415
>ref|NP_002385.3| 4F2 cell-surface antigen heavy chain isoform c [Homo sapiens].
Length = 630
Score = 472 bits (1215), Expect = e-133
Identities = 262/426 (61%), Positives = 292/426 (68%), Gaps = 5/426 (1%)
Frame = +1
Query: 1 DVVAEAARNPAALGGRSGTGRSGQVGVQPLADRRLRRVAGS----AGTMSQDTEVDMKEV 168
D + A++N + +G+ Q G+Q LA +A GTMSQDTEVDMKEV
Sbjct: 56 DPLPSASQNAEMI--ETGSDCVTQAGLQLLASSDPPALASKNAEVTGTMSQDTEVDMKEV 113
Query: 169 ELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXX-KFTGLSKEELLKV 345
ELNELEPEKQPMN EKNGLVKIKV KFTGLSKEELLKV
Sbjct: 114 ELNELEPEKQPMNAASGAAMSLAGA-EKNGLVKIKVAEDEAEAAAAAKFTGLSKEELLKV 172
Query: 346 AGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWHKGALYRIGDLQA 525
AGSPGWVRTR VVIIV+APRCRELPAQ WWH GALYRIGDLQA
Sbjct: 173 AGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELPAQKWWHTGALYRIGDLQA 232
Query: 526 FQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQIDPAFGSKEDFDS 705
FQG AG+LA LKG LDYLS+LKVKG VLGPIHK+QKDD+A TDL QIDP FGSKEDFDS
Sbjct: 233 FQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKEDFDS 292
Query: 706 LLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQAGVDGFQVRDVG 885
LLQSAKKKSIRVILDLTPNY+G+NSWF STQVDTVA K+K+AL FWLQAGVDGFQVRD+
Sbjct: 293 LLQSAKKKSIRVILDLTPNYRGENSWF-STQVDTVATKVKDALEFWLQAGVDGFQVRDIE 351
Query: 886 DLPGASSFLAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXXXPTRDXXXXXXXXXXXXFT 1065
+L ASSFLAEWQN+TK FSEDRLLIAGT+ +D T
Sbjct: 352 NLKDASSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLESNKDLLLTSSYLSDSGST 411
Query: 1066 GEQTSFLVTQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXXXXXXXXXXPGTPMFTYGNE 1245
GE T LVTQYLNATG+RWC+WSLSQA LL S +P+ PGTP+F+YG+E
Sbjct: 412 GEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSYGDE 471
Query: 1246 IGLEEA 1263
IGL+ A
Sbjct: 472 IGLDAA 477
>ref|NP_001013269.1| 4F2 cell-surface antigen heavy chain isoform f [Homo sapiens].
Length = 529
Score = 466 bits (1199), Expect = e-131
Identities = 250/378 (66%), Positives = 272/378 (71%), Gaps = 1/378 (0%)
Frame = +1
Query: 133 MSQDTEVDMKEVELNELEPEKQPMNXXXXXXXXXXXXPEKNGLVKIKVXXXXXXXXXX-K 309
MSQDTEVDMKEVELNELEPEKQPMN EKNGLVKIKV K
Sbjct: 1 MSQDTEVDMKEVELNELEPEKQPMNAASGAAMSLAGA-EKNGLVKIKVAEDEAEAAAAAK 59
Query: 310 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 489
FTGLSKEELLKVAGSPGWVRTR VVIIV+APRCRELPAQ WWH
Sbjct: 60 FTGLSKEELLKVAGSPGWVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELPAQKWWH 119
Query: 490 KGALYRIGDLQAFQGRDAGDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDLAGTDLEQI 669
GALYRIGDLQAFQG AG+LA LKG LDYLS+LKVKG VLGPIHK+QKDD+A TDL QI
Sbjct: 120 TGALYRIGDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQKDDVAQTDLLQI 179
Query: 670 DPAFGSKEDFDSLLQSAKKKSIRVILDLTPNYKGQNSWFDSTQVDTVAAKMKEALSFWLQ 849
DP FGSKEDFDSLLQSAKKKSIRVILDLTPNY+G+NSWF STQVDTVA K+K+AL FWLQ
Sbjct: 180 DPNFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGENSWF-STQVDTVATKVKDALEFWLQ 238
Query: 850 AGVDGFQVRDVGDLPGASSFLAEWQNLTKSFSEDRLLIAGTDXXXXXXXXXXXXPTRDXX 1029
AGVDGFQVRD+ +L ASSFLAEWQN+TK FSEDRLLIAGT+ +D
Sbjct: 239 AGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGTNSSDLQQILSLLESNKDLL 298
Query: 1030 XXXXXXXXXXFTGEQTSFLVTQYLNATGSRWCTWSLSQAGLLDSSVPSHXXXXXXXXXXX 1209
TGE T LVTQYLNATG+RWC+WSLSQA LL S +P+
Sbjct: 299 LTSSYLSDSGSTGEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQLLRLYQLMLFT 358
Query: 1210 XPGTPMFTYGNEIGLEEA 1263
PGTP+F+YG+EIGL+ A
Sbjct: 359 LPGTPVFSYGDEIGLDAA 376
>ref|NP_000332.2| neutral and basic amino acid transport protein rBAT [Homo sapiens].
Length = 685
Score = 70.9 bits (172), Expect = 2e-12
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Frame = +1
Query: 310 FTGLSKEELLKVAGSPGWVRTRXXXXXXXXXXXXXXXXXXVVIIVQAPRCRELPAQSWWH 489
+ G+ KE L + +G + R + II +P+C + WW
Sbjct: 65 YAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLD-----WWQ 119
Query: 490 KGALYRIGDLQAFQGRDA---GDLASLKGHLDYLSTLKVKGFVLGPIHKHQKDDL--AGT 654
+G +Y+I ++F+ + GDL ++ LDY++ L +K + +K D
Sbjct: 120 EGPMYQIYP-RSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVE 178
Query: 655 DLEQIDPAFGSKEDFDSLLQSAKKKSIRVILDLTPNY-KGQNSWFDSTQVDT 807
D ++DP FG+ EDF++L+ + K +++I+D PN+ ++ WF ++ T
Sbjct: 179 DFREVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRT 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,048,658
Number of extensions: 1496919
Number of successful extensions: 7454
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7295
Number of HSP's successfully gapped: 5
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012963
(1264 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1104 0.0
gb|GL895728.2| Sus scrofa unplaced genomic scaffold ChrUScaf3612 347 9e-93
>Sscrofa_Chr02
|| Length = 162569375
Score = 1104 bits (557), Expect = 0.0
Identities = 557/557 (100%)
Strand = Plus / Plus
Query: 1 gacgttgtggcggaagctgcgcggaatccagccgccttgggaggccgttctgggaccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8265773 gacgttgtggcggaagctgcgcggaatccagccgccttgggaggccgttctgggaccggg 8265832
Query: 61 aggtccgggcaggtaggcgtccagccgctcgctgaccgaaggctgcgtcgtgtcgccggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8265833 aggtccgggcaggtaggcgtccagccgctcgctgaccgaaggctgcgtcgtgtcgccggt 8265892
Query: 121 tctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtggagctgaacgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8265893 tctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtggagctgaacgag 8265952
Query: 181 ctggaacccgagaagcagccgatgaacgcggcgtctggggcagccgtggtcgtgtcgggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8265953 ctggaacccgagaagcagccgatgaacgcggcgtctggggcagccgtggtcgtgtcgggc 8266012
Query: 241 ggccccgagaagaatggtctggtgaagattaaggtggccgacgatgaggcagacgcggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266013 ggccccgagaagaatggtctggtgaagattaaggtggccgacgatgaggcagacgcggca 8266072
Query: 301 gcagccaagttcacgggcctgtctaaagaggagctgctgaaggtggcgggaagccccggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266073 gcagccaagttcacgggcctgtctaaagaggagctgctgaaggtggcgggaagccccggc 8266132
Query: 361 tgggtgcgcacccgctgggcgctgctgctgctcttttggctcggctggctgggtatgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266133 tgggtgcgcacccgctgggcgctgctgctgctcttttggctcggctggctgggtatgctg 8266192
Query: 421 gcgggcgccgtggtcatcatcgtgcaggcgccacgctgccgcgagctgcccgcgcagagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266193 gcgggcgccgtggtcatcatcgtgcaggcgccacgctgccgcgagctgcccgcgcagagc 8266252
Query: 481 tggtggcacaagggcgccctctaccgcattggcgaccttcaggctttccagggccgcgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266253 tggtggcacaagggcgccctctaccgcattggcgaccttcaggctttccagggccgcgac 8266312
Query: 541 gcgggagacctagcgag 557
|||||||||||||||||
Sbjct: 8266313 gcgggagacctagcgag 8266329
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 557 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266697 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 8266756
Query: 617 caattcacaagcaccagaaggatgacctcgcaggcaccgacttggaacagatcgaccccg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266757 caattcacaagcaccagaaggatgacctcgcaggcaccgacttggaacagatcgaccccg 8266816
Query: 677 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8266817 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 8266871
Score = 331 bits (167), Expect = 5e-88
Identities = 179/183 (97%)
Strand = Plus / Plus
Query: 952 aggctcttgattgcaggcaccgactcctccgaactacagcagatcctgagcctcctcgaa 1011
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8270374 aggctcttgattgcaggcaccgactcctccgacctacagcagatcctgagcctcctcgaa 8270433
Query: 1012 cccaccagggacctgttgttaactagctcgtacctgtccaactcctctttcacgggggag 1071
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8270434 cccaccaaggacctgttgttaactagctcgtacctgtccaactcctctttcacggggaag 8270493
Query: 1072 caaaccagtttcctggtcacgcagtatttgaatgccactggcagtcgctggtgcacctgg 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8270494 caaaccagtttcctggtcacgcagtatttgaatgccactggcagtcgctggtgcagctgg 8270553
Query: 1132 agc 1134
|||
Sbjct: 8270554 agc 8270556
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 731 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8267448 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 8267507
Query: 791 ccactcaggtggacactgtggctgccaagatgaagg 826
||||||||||||||||||||||||||||||||||||
Sbjct: 8267508 ccactcaggtggacactgtggctgccaagatgaagg 8267543
Score = 170 bits (86), Expect = 1e-39
Identities = 119/130 (91%)
Strand = Plus / Plus
Query: 1135 ttgtcccaggcggggcttctggactcctctgtgccgtctcaccttctccgggtctaacag 1194
||||| ||||||||||||||| ||||||||||||||||||||| |||||| |||| |||
Sbjct: 8270863 ttgtcgcaggcggggcttctgacctcctctgtgccgtctcacctcctccggctctaccag 8270922
Query: 1195 ctgctgctcttcaatctgccggggaccccaatgttcacctacggaaacgaaattggcctg 1254
||||||||||||| |||||||||||||||| |||||| ||||||| |||| |||||||||
Sbjct: 8270923 ctgctgctcttcactctgccggggaccccagtgttcagctacggagacgagattggcctg 8270982
Query: 1255 gaggaagcgg 1264
||||||||||
Sbjct: 8270983 gaggaagcgg 8270992
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 824 aggaagctctgagtttttggctgcaggccggtgtggatgggttccaggttcgggacgtgg 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8269982 aggaagctctgagtttttggctgcaggccggtgtggatgggttccaggttcgggacgtgg 8270041
Query: 884 gggatctgccag 895
||||||||||||
Sbjct: 8270042 gggatctgccag 8270053
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 895 ggcgcgtcttcattcctggctgagtggcagaacctcactaagagcttcagcgaggatagg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8270155 ggcgcgtcttcattcctggctgagtggcagaacctcactaagagcttcagcgaggatagg 8270214
>gb|GL895728.2| Sus scrofa unplaced genomic scaffold ChrUScaf3612
Length = 17238
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 557 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7116 gcctgaaggggcatcttgattacttgagcaccctgaaggtgaaaggttttgtgctgggcc 7057
Query: 617 caattcacaagcaccagaaggatgacctcgcaggcaccgacttggaacagatcgaccccg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7056 caattcacaagcaccagaaggatgacctcgcaggcaccgacttggaacagatcgaccccg 6997
Query: 677 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6996 ctttcggttctaaggaagattttgacagtctcctgcaatcggccaagaaaaagag 6942
Score = 289 bits (146), Expect = 2e-75
Identities = 158/162 (97%)
Strand = Plus / Minus
Query: 973 gactcctccgaactacagcagatcctgagcctcctcgaacccaccagggacctgttgtta 1032
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4083 gactcctccgacctacagcagatcctgagcctcctcgaacccaccaaggacctgttgtta 4024
Query: 1033 actagctcgtacctgtccaactcctctttcacgggggagcaaaccagtttcctggtcacg 1092
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4023 actagctcgtacctgtccaactcctctttcacggggaagcaaaccagtttcctggtcacg 3964
Query: 1093 cagtatttgaatgccactggcagtcgctggtgcacctggagc 1134
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3963 cagtatttgaatgccactggcagtcgctggtgcagctggagc 3922
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 731 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6365 gcatccgggtcattctagacctcactcccaactataagggccagaactcatggttcgact 6306
Query: 791 ccactcaggtggacactgtggctgccaagatgaagg 826
||||||||||||||||||||||||||||||||||||
Sbjct: 6305 ccactcaggtggacactgtggctgccaagatgaagg 6270
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 241 ggccccgagaagaatggtctggtgaagattaaggtggccgacgatgaggcagacgcggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7660 ggccccgagaagaatggtctggtgaagattaaggtggccgacgatgaggcagacgcggca 7601
Query: 301 gcagccaagttcacgggcctgtctaaag 328
||||||||||||||||||||||||||||
Sbjct: 7600 gcagccaagttcacgggcctgtctaaag 7573
Score = 163 bits (82), Expect = 3e-37
Identities = 118/130 (90%)
Strand = Plus / Minus
Query: 1135 ttgtcccaggcggggcttctggactcctctgtgccgtctcaccttctccgggtctaacag 1194
||||| ||||||||||||||| ||||||||||||||||||||| |||||| |||| |||
Sbjct: 3612 ttgtcgcaggcggggcttctgacctcctctgtgccgtctcacctcctccggctctaccag 3553
Query: 1195 ctgctgctcttcaatctgccggggaccccaatgttcacctacggaaacgaaattggcctg 1254
||||||||| ||| |||||||||||||||| |||||| ||||||| |||| |||||||||
Sbjct: 3552 ctgctgctcctcactctgccggggaccccagtgttcagctacggagacgagattggcctg 3493
Query: 1255 gaggaagcgg 1264
||||||||||
Sbjct: 3492 gaggaagcgg 3483
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 113 tcgccggttctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtgga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7818 tcgccggttctgcaggcaccatgagccaggacaccgaggtggacatgaaggaagtgga 7761
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,375,085
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 13
Length of query: 1264
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1243
Effective length of database: 2,808,413,156
Effective search space: 3490857552908
Effective search space used: 3490857552908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)