Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012972
(1927 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030392.1| GTP-binding protein SAR1b [Bos taurus]. 400 e-111
Alignment gi|NP_001029693.1| GTP-binding protein SAR1a [Bos taurus]. 372 e-103
Alignment gi|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus]. 98 2e-20
Alignment gi|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus]. 98 2e-20
Alignment gi|XP_002684999.1| PREDICTED: ADP-ribosylation factor-like 14-l... 98 3e-20
Alignment gi|XP_590420.1| PREDICTED: ADP-ribosylation factor-like 14 [Bos... 98 3e-20
Alignment gi|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus]. 95 3e-19
Alignment gi|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos ... 94 3e-19
Alignment gi|NP_001069250.1| ADP-ribosylation factor-like protein 6 [Bos ... 94 3e-19
Alignment gi|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus]. 94 4e-19
>ref|NP_001030392.1| GTP-binding protein SAR1b [Bos taurus].
Length = 198
Score = 400 bits (1029), Expect = e-111
Identities = 197/198 (99%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKG+VSLKELNARPLEVFMCSV
Sbjct: 121 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001029693.1| GTP-binding protein SAR1a [Bos taurus].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_002684999.1| PREDICTED: ADP-ribosylation factor-like 14-like [Bos taurus].
Length = 192
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK D+ +PT+ E + +A G++ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLDKDIVTIPTVGFNVEMIELAKGVSLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R W Y +G+V++VD D +RL +S++E + ++ +E + NVP+++L NK D P A+
Sbjct: 72 RATWGLYCENTDGLVYVVDSTDTQRLEDSRKEFEHILKNEYIKNVPVVLLANKQDMPGAL 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKEL-NARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
S E + MF +K+L + R V C + G EGF+ + ++
Sbjct: 132 SAEDITRMF------------KVKQLCSDRNWCVQPCCAVTGDGLMEGFQKLTGFV 175
>ref|XP_590420.1| PREDICTED: ADP-ribosylation factor-like 14 [Bos taurus].
Length = 192
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK D+ +PT+ E + +A G++ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLDKDIVTIPTVGFNVEMIELAKGVSLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R W Y +G+V++VD D +RL +S++E + ++ +E + NVP+++L NK D P A+
Sbjct: 72 RATWGLYCENTDGLVYVVDSTDTQRLEDSRKEFEHILKNEYIKNVPVVLLANKQDMPGAL 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKEL-NARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
S E + MF +K+L + R V C + G EGF+ + ++
Sbjct: 132 SAEDITRMF------------KVKQLCSDRNWCVQPCCAVTGDGLMEGFQKLTGFV 175
>ref|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus].
Length = 181
Score = 94.7 bits (234), Expect = 3e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos taurus].
Length = 184
Score = 94.4 bits (233), Expect = 3e-19
Identities = 48/143 (33%), Positives = 80/143 (55%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL +L+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S +RE L
Sbjct: 122 IFANKQDLPGALSSNAIREALEL 144
>ref|NP_001069250.1| ADP-ribosylation factor-like protein 6 [Bos taurus].
Length = 186
Score = 94.4 bits (233), Expect = 3e-19
Identities = 52/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK VPT+ + ++ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEEL +L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D +A++ ++ ++ + L+++ +P + +K +G EG W+
Sbjct: 131 KMDLRDALTSVKVSQL------------LCLEDIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus].
Length = 181
Score = 94.0 bits (232), Expect = 4e-19
Identities = 53/186 (28%), Positives = 97/186 (52%)
Frame = +1
Query: 1057 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 1236
F ++L+ L + KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++F
Sbjct: 5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 1237 TTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILI 1416
T +D+GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 1417 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
NK D P A++ + + GL+ L R + G EG
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLD 171
Query: 1597 WMAQYI 1614
W+A +
Sbjct: 172 WLANQL 177
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,338,505
Number of extensions: 1918708
Number of successful extensions: 8937
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 8828
Number of HSP's successfully gapped: 40
Length of query: 642
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,074,782
Effective search space: 7501858806
Effective search space used: 7501858806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012972
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012972
(1927 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538630.2| PREDICTED: similar to GTP-binding protein SAR1b... 400 e-111
Alignment gi|XP_536379.1| PREDICTED: similar to SAR1a gene homolog 1 isof... 372 e-103
Alignment gi|XP_861292.1| PREDICTED: similar to SAR1a gene homolog 1 isof... 149 7e-36
Alignment gi|XP_861261.1| PREDICTED: similar to SAR1a gene homolog 1 isof... 149 7e-36
Alignment gi|XP_849898.1| PREDICTED: similar to ADP-ribosylation factor-l... 100 5e-21
Alignment gi|XP_547801.1| PREDICTED: similar to ADP-ribosylation factor 6... 98 2e-20
Alignment gi|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-l... 96 2e-19
Alignment gi|XP_545258.1| PREDICTED: similar to ADP-ribosylation factor 7... 95 2e-19
Alignment gi|XP_544360.1| PREDICTED: similar to GTP-binding protein ARD-1... 95 2e-19
Alignment gi|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3... 94 5e-19
>ref|XP_538630.2| PREDICTED: similar to GTP-binding protein SAR1b (GTBPB) [Canis
familiaris].
Length = 198
Score = 400 bits (1028), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKG+VSLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|XP_536379.1| PREDICTED: similar to SAR1a gene homolog 1 isoform 2 [Canis
familiaris].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|XP_861292.1| PREDICTED: similar to SAR1a gene homolog 1 isoform 4 [Canis
familiaris].
Length = 80
Score = 149 bits (377), Expect = 7e-36
Identities = 69/80 (86%), Positives = 79/80 (98%)
Frame = +1
Query: 1378 MTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 1557
MTDET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMC
Sbjct: 1 MTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMC 60
Query: 1558 SVLKRQGYGEGFRWMAQYID 1617
SVLKRQGYGEGFRW++QYID
Sbjct: 61 SVLKRQGYGEGFRWLSQYID 80
>ref|XP_861261.1| PREDICTED: similar to SAR1a gene homolog 1 isoform 3 [Canis
familiaris].
Length = 80
Score = 149 bits (377), Expect = 7e-36
Identities = 69/80 (86%), Positives = 79/80 (98%)
Frame = +1
Query: 1378 MTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 1557
MTDET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMC
Sbjct: 1 MTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMC 60
Query: 1558 SVLKRQGYGEGFRWMAQYID 1617
SVLKRQGYGEGFRW++QYID
Sbjct: 61 SVLKRQGYGEGFRWLSQYID 80
>ref|XP_849898.1| PREDICTED: similar to ADP-ribosylation factor-like 6 [Canis
familiaris].
Length = 317
Score = 100 bits (249), Expect = 5e-21
Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 11/277 (3%)
Frame = +1
Query: 817 IGRGTAR-----RRNFGAWRC--SPENLRE*STRRPGRS*REFGPRQPSRLTPECRGPTP 975
+ RGT R RR G R SP+ + + PG + R+ R PE T
Sbjct: 53 VARGTPRTRAPARRLLGLRRALRSPQLV---AAAVPGPGSVRWRRREEGREAPETSPGTD 109
Query: 976 RKESRSLQSQTL*DLAMSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHM 1155
+ +R+ Q+ + L ++ + I + LGL KK ++ LGLDN+GKTT+++
Sbjct: 110 GRAARA-QADSEDQLVWKYL-NHIMGLLDRLSGLLGLKKKEVHVLCLGLDNSGKTTIINK 167
Query: 1156 LKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDC 1329
LK VPT+ + E+ + ++FT FD+ G + R +W++Y I+F++D
Sbjct: 168 LKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDS 227
Query: 1330 ADHERLLESKEELDSLMTDETVAN--VPILILGNKIDRPEAISEERLREMFGLYGQTTGK 1503
+D R++ +KEELD+L+ + + +PIL NK+D +A++ ++ ++
Sbjct: 228 SDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQL---------- 277
Query: 1504 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ L+ + +P + +K +G EG W+ I
Sbjct: 278 --LCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 312
>ref|XP_547801.1| PREDICTED: similar to ADP-ribosylation factor 6 [Canis familiaris].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-like protein 2 isoform
1 [Canis familiaris].
Length = 184
Score = 95.5 bits (236), Expect = 2e-19
Identities = 49/143 (34%), Positives = 80/143 (55%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL SL+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S +RE L
Sbjct: 122 IFANKQDLPGALSSNAIREALEL 144
>ref|XP_545258.1| PREDICTED: similar to ADP-ribosylation factor 7 [Canis familiaris].
Length = 192
Score = 95.1 bits (235), Expect = 2e-19
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK + +PT+ E + + ++ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLAKNISTLPTIGFNVEMIQLEKNLSLTIWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R VW +Y +G++++VD D +RL +S EL+ ++ +E + NVP+++L NK D P A+
Sbjct: 72 RTVWDHYCENTDGLMYVVDSTDKQRLKDSSRELEHILKNEHIKNVPVVLLANKQDVPGAL 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E + MF + K + R V C + G EGFR + ++
Sbjct: 132 TAEDITRMFKV-----------KKLCSDRNWYVQPCCAITGDGLMEGFRKLTGFV 175
>ref|XP_544360.1| PREDICTED: similar to GTP-binding protein ARD-1 (ADP-ribosylation
factor domain protein 1) (Tripartite motif protein 23)
[Canis familiaris].
Length = 574
Score = 95.1 bits (235), Expect = 2e-19
Identities = 54/171 (31%), Positives = 88/171 (51%)
Frame = +1
Query: 1102 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVW 1281
++V LGLD AGKTT+L LK D Q +PT+ E + + FT +D+GG + R +W
Sbjct: 406 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 465
Query: 1282 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEER 1461
K+Y +VF+VD + +R+ E+ EL L+T++ + + +LI NK D A+S E
Sbjct: 466 KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 525
Query: 1462 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E+ L+ G R + C G EG W+++++
Sbjct: 526 ITELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRHL 565
>ref|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3 isoform 1 [Canis
familiaris].
Length = 181
Score = 94.0 bits (232), Expect = 5e-19
Identities = 53/186 (28%), Positives = 97/186 (52%)
Frame = +1
Query: 1057 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 1236
F ++L+ L + KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++F
Sbjct: 5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 1237 TTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILI 1416
T +D+GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 1417 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
NK D P A++ + + GL+ L R + G EG
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLD 171
Query: 1597 WMAQYI 1614
W+A +
Sbjct: 172 WLANQL 177
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,484,002
Number of extensions: 1975919
Number of successful extensions: 9207
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 9100
Number of HSP's successfully gapped: 38
Length of query: 642
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 533
Effective length of database: 15,240,880
Effective search space: 8123389040
Effective search space used: 8123389040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012972
(1927 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008689.1| GTP-binding protein SAR1b [Sus scrofa]. 402 e-112
Alignment gi|NP_001026956.1| GTP-binding protein SAR1a [Sus scrofa]. 372 e-103
Alignment gi|XP_003358917.1| PREDICTED: ADP-ribosylation factor-like prot... 99 1e-20
Alignment gi|XP_003357883.1| PREDICTED: ADP-ribosylation factor-like prot... 99 1e-20
Alignment gi|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa]. 98 1e-20
Alignment gi|XP_003131009.1| PREDICTED: ADP-ribosylation factor-like prot... 98 2e-20
Alignment gi|XP_003132562.1| PREDICTED: ADP-ribosylation factor-like prot... 96 5e-20
Alignment gi|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like prot... 96 7e-20
Alignment gi|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa]. 95 2e-19
Alignment gi|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa]. 94 3e-19
>ref|NP_001008689.1| GTP-binding protein SAR1b [Sus scrofa].
Length = 198
Score = 402 bits (1032), Expect = e-112
Identities = 198/198 (100%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV
Sbjct: 121 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001026956.1| GTP-binding protein SAR1a [Sus scrofa].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|XP_003358917.1| PREDICTED: ADP-ribosylation factor-like protein 6-like [Sus scrofa].
Length = 186
Score = 98.6 bits (244), Expect = 1e-20
Identities = 54/183 (29%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK VPT+ + E+ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEELD+L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D +A++ ++ ++ + L+ + +P + +K +G EG W+
Sbjct: 131 KMDLRDAVTSVKVSQL------------LCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|XP_003357883.1| PREDICTED: ADP-ribosylation factor-like protein 11-like [Sus scrofa].
Length = 229
Score = 98.6 bits (244), Expect = 1e-20
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Frame = +1
Query: 1087 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHV 1263
++ ++V +GLD+AGKTTLL+ LK +L + +PT+ E L G ++ T +D+GG
Sbjct: 9 HRAEAQVVMMGLDSAGKTTLLYRLKGYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQS 68
Query: 1264 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPE 1443
Q R WK++L + +V+++D D RL E+ EL ++ D +VA+VP+L+L NK + P+
Sbjct: 69 QLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEAPQ 128
Query: 1444 AISEERLREMFGLYG 1488
A+S +R+ GL G
Sbjct: 129 ALSLPEIRDRLGLQG 143
>ref|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa].
Length = 175
Score = 98.2 bits (243), Expect = 1e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_003131009.1| PREDICTED: ADP-ribosylation factor-like protein 11-like [Sus scrofa].
Length = 182
Score = 97.8 bits (242), Expect = 2e-20
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Frame = +1
Query: 1087 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHV 1263
++ ++V +GLD+AGKTTLL+ LK +L + +PT+ E L G ++ T +D+GG
Sbjct: 9 HRAEAQVVMMGLDSAGKTTLLYRLKGYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQS 68
Query: 1264 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPE 1443
Q R WK++L + +V+++D D RL E+ EL ++ D +VA+VP+L+L NK + P+
Sbjct: 69 QLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQ 128
Query: 1444 AISEERLREMFGLYG 1488
A+S +R+ GL G
Sbjct: 129 ALSLPEIRDRLGLQG 143
>ref|XP_003132562.1| PREDICTED: ADP-ribosylation factor-like protein 14-like [Sus scrofa].
Length = 192
Score = 96.3 bits (238), Expect = 5e-20
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK + + PT+ E + + G+ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLAKDIETTPTIGFNVEMMELEKGLQLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R VW Y +G+V++VD +D +RL +S+ E + ++ +E + NVP+++L NK D P A+
Sbjct: 72 RTVWSLYCENTDGLVYVVDSSDTQRLEDSRREFEHILKNEHIKNVPVILLANKQDVPGAM 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E + MF + K + R V C + G EGFR + ++
Sbjct: 132 NAEEITRMFKV-----------KKLCSDRNWYVQPCCAVTGDGLMEGFRKLTGFV 175
>ref|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Sus scrofa].
Length = 184
Score = 95.9 bits (237), Expect = 7e-20
Identities = 49/143 (34%), Positives = 81/143 (56%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL SL+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S + +RE L
Sbjct: 122 IFANKQDLPGALSSKAIREALEL 144
>ref|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa].
Length = 181
Score = 94.7 bits (234), Expect = 2e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa].
Length = 181
Score = 94.0 bits (232), Expect = 3e-19
Identities = 53/186 (28%), Positives = 97/186 (52%)
Frame = +1
Query: 1057 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 1236
F ++L+ L + KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++F
Sbjct: 5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKSISF 63
Query: 1237 TTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILI 1416
T +D+GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 1417 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
NK D P A++ + + GL+ L R + G EG
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLD 171
Query: 1597 WMAQYI 1614
W+A +
Sbjct: 172 WLANQL 177
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,890,443
Number of extensions: 1231691
Number of successful extensions: 5766
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5706
Number of HSP's successfully gapped: 35
Length of query: 642
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 537
Effective length of database: 8,729,747
Effective search space: 4687874139
Effective search space used: 4687874139
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012972
(1927 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079811.1| GTP-binding protein SAR1b [Mus musculus]. 400 e-111
Alignment gi|NP_033146.1| GTP-binding protein SAR1a [Mus musculus]. 373 e-103
Alignment gi|NP_796311.2| ADP-ribosylation factor-like protein 11 [Mus mu... 99 1e-20
Alignment gi|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus]. 98 2e-20
Alignment gi|NP_062639.3| ADP-ribosylation factor-like protein 6 [Mus mus... 97 6e-20
Alignment gi|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus]. 95 2e-19
Alignment gi|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus]. 95 2e-19
Alignment gi|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculu... 94 3e-19
Alignment gi|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus]. 94 4e-19
Alignment gi|NP_082119.1| ADP-ribosylation factor-like protein 14 [Mus mu... 93 6e-19
>ref|NP_079811.1| GTP-binding protein SAR1b [Mus musculus].
Length = 198
Score = 400 bits (1027), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_033146.1| GTP-binding protein SAR1a [Mus musculus].
Length = 198
Score = 373 bits (957), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|NP_796311.2| ADP-ribosylation factor-like protein 11 [Mus musculus].
Length = 176
Score = 99.0 bits (245), Expect = 1e-20
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 1/171 (0%)
Frame = +1
Query: 1087 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHV 1263
+K ++V +GLD+AGKTT+L+ LK ++L +PT+ E L G ++ T +D+GG
Sbjct: 9 HKAEAQVVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQT 68
Query: 1264 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPE 1443
Q R WK+YL I+ +V+++D D RL E+ EL ++ D +A VP L+L NK + P
Sbjct: 69 QLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPG 128
Query: 1444 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
A+ +R GL G E+ CS L QG E +
Sbjct: 129 ALPLLEIRNRLGLEG------------FQKHCWELRACSALTGQGLQEALQ 167
>ref|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|NP_062639.3| ADP-ribosylation factor-like protein 6 [Mus musculus].
Length = 186
Score = 96.7 bits (239), Expect = 6e-20
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK VPT+ + E+ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEELD+L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D ++++ ++ ++ + L+ + +P + +K +G EG W+
Sbjct: 131 KMDLRDSVTSVKVSQL------------LCLESIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 94.7 bits (234), Expect = 2e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 94.7 bits (234), Expect = 2e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculus].
Length = 554
Score = 94.4 bits (233), Expect = 3e-19
Identities = 54/171 (31%), Positives = 87/171 (50%)
Frame = +1
Query: 1102 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVW 1281
++V LGLD AGKTT+L LK D Q +PT+ E + + FT +D+GG + R +W
Sbjct: 386 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 445
Query: 1282 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEER 1461
K+Y +VF+VD + +R+ E+ EL L+T++ + + +LI NK D A+S E
Sbjct: 446 KHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 505
Query: 1462 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E+ L+ G R + C G EG W+++ +
Sbjct: 506 ITELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRQL 545
>ref|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus].
Length = 181
Score = 94.0 bits (232), Expect = 4e-19
Identities = 53/186 (28%), Positives = 97/186 (52%)
Frame = +1
Query: 1057 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 1236
F ++L+ L + KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++F
Sbjct: 5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 1237 TTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILI 1416
T +D+GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 1417 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
NK D P A++ + + GL+ L R + G EG
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLD 171
Query: 1597 WMAQYI 1614
W+A +
Sbjct: 172 WLANQL 177
>ref|NP_082119.1| ADP-ribosylation factor-like protein 14 [Mus musculus].
Length = 192
Score = 93.2 bits (230), Expect = 6e-19
Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 2/176 (1%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI-AGMTFTTFDLGGHVQA 1269
K ++ LGLD+AGK+TLL+ LK +PT+ E + + + +T T +D+GG +
Sbjct: 12 KQAHILLLGLDSAGKSTLLYRLKFAETLSTIPTIGFNVEMVQLQSSLTLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCAD-HERLLESKEELDSLMTDETVANVPILILGNKIDRPEA 1446
R VW Y G++++VDC++ +RL +S++E ++ +E + N P++IL NK D P A
Sbjct: 72 RTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGA 131
Query: 1447 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+S E + MF + K + R V C + +G +GFR + +++
Sbjct: 132 LSAEDITRMFKV-----------KKLCSNRNWYVQPCCAVTGEGLDDGFRKLTEFL 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,235,661
Number of extensions: 1639829
Number of successful extensions: 7001
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 6934
Number of HSP's successfully gapped: 35
Length of query: 642
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 534
Effective length of database: 12,373,671
Effective search space: 6607540314
Effective search space used: 6607540314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012972
(1927 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057187.1| GTP-binding protein SAR1b [Homo sapiens]. 401 e-111
Alignment gi|NP_001028675.1| GTP-binding protein SAR1b [Homo sapiens]. 401 e-111
Alignment gi|NP_001136120.1| GTP-binding protein SAR1a [Homo sapiens]. 372 e-103
Alignment gi|NP_064535.1| GTP-binding protein SAR1a [Homo sapiens]. 372 e-103
Alignment gi|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens]. 98 2e-20
Alignment gi|NP_816931.1| ADP-ribosylation factor-like protein 6 [Homo sa... 97 4e-20
Alignment gi|NP_115522.1| ADP-ribosylation factor-like protein 6 [Homo sa... 97 4e-20
Alignment gi|NP_001658.2| ADP-ribosylation factor-like protein 2 isoform ... 96 9e-20
Alignment gi|NP_079323.1| ADP-ribosylation factor-like protein 14 [Homo s... 95 3e-19
Alignment gi|NP_612459.1| ADP-ribosylation factor-like protein 11 [Homo s... 95 3e-19
>ref|NP_057187.1| GTP-binding protein SAR1b [Homo sapiens].
Length = 198
Score = 401 bits (1030), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS+SLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001028675.1| GTP-binding protein SAR1b [Homo sapiens].
Length = 198
Score = 401 bits (1030), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS+SLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001136120.1| GTP-binding protein SAR1a [Homo sapiens].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|NP_064535.1| GTP-binding protein SAR1a [Homo sapiens].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|NP_816931.1| ADP-ribosylation factor-like protein 6 [Homo sapiens].
Length = 186
Score = 97.4 bits (241), Expect = 4e-20
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK +PT+ + E+ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEELD+L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D +A++ ++ ++ + L+ + +P + +K +G EG W+
Sbjct: 131 KMDLRDAVTSVKVSQL------------LCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_115522.1| ADP-ribosylation factor-like protein 6 [Homo sapiens].
Length = 186
Score = 97.4 bits (241), Expect = 4e-20
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK +PT+ + E+ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEELD+L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D +A++ ++ ++ + L+ + +P + +K +G EG W+
Sbjct: 131 KMDLRDAVTSVKVSQL------------LCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_001658.2| ADP-ribosylation factor-like protein 2 isoform 1 [Homo sapiens].
Length = 184
Score = 96.3 bits (238), Expect = 9e-20
Identities = 49/143 (34%), Positives = 81/143 (56%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL SL+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S +RE+ L
Sbjct: 122 IFANKQDLPGALSSNAIREVLEL 144
>ref|NP_079323.1| ADP-ribosylation factor-like protein 14 [Homo sapiens].
Length = 192
Score = 94.7 bits (234), Expect = 3e-19
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK + +PT+ E + + ++ T +D+GG +
Sbjct: 12 KQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R VW Y +G+V++VD D +RL ES+ + + ++ +E + NVP+++L NK D P A+
Sbjct: 72 RTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGAL 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E + MF + K + R V C L +G +GFR + ++
Sbjct: 132 TAEDITRMFKV-----------KKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFV 175
>ref|NP_612459.1| ADP-ribosylation factor-like protein 11 [Homo sapiens].
Length = 196
Score = 94.7 bits (234), Expect = 3e-19
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 1/171 (0%)
Frame = +1
Query: 1087 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHV 1263
+K ++V +GLD+AGKTTLL+ LK +L + +PT+ E L G ++ T +D+GG
Sbjct: 9 HKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLTLWDVGGQA 68
Query: 1264 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPE 1443
R WK+YL + +V+++D D RL ES EL ++ D +A VP L+L NK + P+
Sbjct: 69 PLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPD 128
Query: 1444 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
A+ ++R +SL+ E+ CS L +G E +
Sbjct: 129 ALPLLKIR------------NRLSLERFQDHCWELRGCSALTGEGLPEALQ 167
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,142,729
Number of extensions: 1946243
Number of successful extensions: 8855
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 8755
Number of HSP's successfully gapped: 48
Length of query: 642
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,704,088
Effective search space: 7837278904
Effective search space used: 7837278904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012972
(1927 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1961 0.0
Sscrofa_Chr09 161 2e-36
Sscrofa_Chr14 80 5e-12
>Sscrofa_Chr02
|| Length = 162569375
Score = 1961 bits (989), Expect = 0.0
Identities = 1001/1005 (99%)
Strand = Plus / Minus
Query: 1 agagcggaaaaggcagatgtggttcttgacctaagaaaccttgatagaatatctgtgggg 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 142489988 agagcggaaaaggcagatgtggttcttgacctaaggaaccttgatagaatatctgttggg 142489929
Query: 61 gaaagctatagataaataatcatacaaatttaactgtacaattataagcaacatagcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489928 gaaagctatagataaataatcatacaaatttaactgtacaattataagcaacatagcttc 142489869
Query: 121 aatgatatggcaaattgtacagttgctgggaagcctgtaaaggagggcttaaccaagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489868 aatgatatggcaaattgtacagttgctgggaagcctgtaaaggagggcttaaccaagcct 142489809
Query: 181 gagagggaggctttgataagagatggggacctgtgctgacatgggaagagtgtgtagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489808 gagagggaggctttgataagagatggggacctgtgctgacatgggaagagtgtgtagatg 142489749
Query: 241 ttagcaggaaggagaggagcaatctggggaagacgttctggcagaggaatgacaagcacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489748 ttagcaggaaggagaggagcaatctggggaagacgttctggcagaggaatgacaagcacg 142489689
Query: 301 aagggaggacccatgagtaaggcgtttcctgaggctggggggaaagaggaggggatctag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 142489688 aagggaggacccatgagtaaggcgtttcctgaggctggggggaaagaggaggagatctag 142489629
Query: 361 cagagccatcataggctttgttggcaatctatcggaaaactctgcttcggtccccaaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489628 cagagccatcataggctttgttggcaatctatcggaaaactctgcttcggtccccaaagc 142489569
Query: 421 ccttcctgttctgtccgcatcacctagaatcctagtgttgagagcaatcttggaagcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489568 ccttcctgttctgtccgcatcacctagaatcctagtgttgagagcaatcttggaagcact 142489509
Query: 481 gtcatcacactttcatgcaaggcacccaaggaatcccatctgaatacatttaagaaaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489508 gtcatcacactttcatgcaaggcacccaaggaatcccatctgaatacatttaagaaaggc 142489449
Query: 541 agcatccattagcaaagaactgcggagtcagtcttgcttaaagctcaacagccagcatcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489448 agcatccattagcaaagaactgcggagtcagtcttgcttaaagctcaacagccagcatcc 142489389
Query: 601 aacatactatctggcacgcagttacattttgtaaattacttgttgaattcaagaaacaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489388 aacatactatctggcacgcagttacattttgtaaattacttgttgaattcaagaaacaag 142489329
Query: 661 tgtactttaaaaatgtgtttttcaaaaaaggatgtcacatataatttccccaagctaagc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489328 tgtactttaaaaatgtgtttttcaaaaaaggatgtcacatataatttccccaagctaagc 142489269
Query: 721 acctgtgttcccttctctgtttaggcccgcggccccagaagcgcgttcagttggaggtct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489268 acctgtgttcccttctctgtttaggcccgcggccccagaagcgcgttcagttggaggtct 142489209
Query: 781 ggagttcgccccaggtcttggcgcgctcacggtgggattggccgcggaaccgccaggagg 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489208 ggagctcgccccaggtcttggcgcgctcacggtgggattggccgcggaaccgccaggagg 142489149
Query: 841 cggaacttcggcgcgtggcgctgcagtcccgagaaccttcgggagtgaagcacccgccgg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489148 cggaacttcggcgcgtggcgctgcagtcccgagaaccttcgggagtgaagcacccgccgg 142489089
Query: 901 cccggaaggagctgacgcgagttcgggccgcggcagccatcgcgcttgacaccggagtgc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489088 cccggaaggagctgacgcgagttcgggccgcggcagccatcgcgcttgacaccggagtgc 142489029
Query: 961 cgagggccgacgccgagaaaggaatcgcgttctctccagtcgcag 1005
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142489028 cgagggccgacgccgagaaaggaatcgcgttctctccagtcgcag 142488984
Score = 666 bits (336), Expect = 0.0
Identities = 412/429 (96%), Gaps = 8/429 (1%)
Strand = Plus / Minus
Query: 1502 agggcagcgtgtctctgaaggaactcaacgcccggcccttggaggtgttcatgtgcagcg 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142464347 agggcagcgtgtctctgaaggaactcaacgcccggcccttggaggtgttcatgtgcagcg 142464288
Query: 1562 tgcttaaaagacaaggctacggagaaggcttccgctggatggcccagtacatagattaac 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142464287 tgcttaaaagacaaggctacggagaaggcttccgctggatggcccagtacatagattaac 142464228
Query: 1622 cccggcccggcccgcggggtccaggtcccgccgctcaggcctcctcagaggtgtgattcc 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142464227 cccggcccggcccgcggggtccaggtcccgccgctcaggcctcctcagaggtgtgattcc 142464168
Query: 1682 tcgacatgcagaacttgaatgcaatggactttggttggttgaaaaacaga-gttttttag 1740
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 142464167 tcgacatgcagaacttgaatgcaatggactttggttggttagaaaacagaggttttttag 142464108
Query: 1741 atgattattactattctatccaatttatttgagtgaggattg-aaacggattc-agggag 1798
|||||||||||||||||||| | || |||||||||||||||| |||||||||| ||||||
Sbjct: 142464107 atgattattactattctatcaacttaatttgagtgaggattgaaaacggattcaagggag 142464048
Query: 1799 tttgacgatcac-atgttagctttcgaattccatagaaataattccctttttaccgtt-- 1855
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 142464047 tttgacgatcacaatgttagctttcgaattccatagaaataatt-cctttttaccgttta 142463989
Query: 1856 taatctgacatcgccccccagcnacatttttaangagc-acttttcagactacatttgaa 1914
|||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||
Sbjct: 142463988 taatctgacatcgccccccagcaccatttttaaagagcaactttccagactacatttgaa 142463929
Query: 1915 gcacttttt 1923
|||||||||
Sbjct: 142463928 gcacttttt 142463920
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 1372 tcactaatgacagatgaaactgttgctaacgtgcctatattgattcttgggaataagatt 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142465979 tcactaatgacagatgaaactgttgctaacgtgcctatattgattcttgggaataagatt 142465920
Query: 1432 gacagacctgaagccatcagtgaagagaggttacgagagatgtttggtttatatggtcag 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142465919 gacagacctgaagccatcagtgaagagaggttacgagagatgtttggtttatatggtcag 142465860
Query: 1492 acaacaggaaagg 1504
|||||||||||||
Sbjct: 142465859 acaacaggaaagg 142465847
Score = 242 bits (122), Expect = 6e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1080 aggattatataagaaaactggtaaactggtatttcttggattggataatgcgggaaaaac 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142477261 aggattatataagaaaactggtaaactggtatttcttggattggataatgcgggaaaaac 142477202
Query: 1140 aacattactacacatgctaaaagacgacagactgggacaacatgtcccaacgttacatcc 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142477201 aacattactacacatgctaaaagacgacagactgggacaacatgtcccaacgttacatcc 142477142
Query: 1200 ca 1201
||
Sbjct: 142477141 ca 142477140
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 1266 agctcggagagtgtggaaaaactaccttcctgctatcaatggcattgtatttctggtgga 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142467402 agctcggagagtgtggaaaaactaccttcctgctatcaatggcattgtatttctggtgga 142467343
Query: 1326 ttgtgcagaccatgaaaggctgttagaatcaaaagaagaacttgat 1371
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142467342 ttgtgcagaccatgaaaggctgttagaatcaaaagaagaacttgat 142467297
Score = 159 bits (80), Expect = 7e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1003 cagaccctataagatttggctatgtccttcatatttgactggatttacagtggtttcagc 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142478349 cagaccctataagatttggctatgtccttcatatttgactggatttacagtggtttcagc 142478290
Query: 1063 agtgtgctacagtttttagg 1082
||||||||||||||||||||
Sbjct: 142478289 agtgtgctacagtttttagg 142478270
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1202 cttcagaggaactaaccattgctggcatgacctttacaacttttgatctgggtggacacg 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142469466 cttcagaggaactaaccattgctggcatgacctttacaacttttgatctgggtggacacg 142469407
Query: 1262 ttcaag 1267
||||||
Sbjct: 142469406 ttcaag 142469401
>Sscrofa_Chr09
|| Length = 153670197
Score = 161 bits (81), Expect = 2e-36
Identities = 244/291 (83%), Gaps = 13/291 (4%)
Strand = Plus / Minus
Query: 1234 tttacaacttttgatctgggtggacacgttcaagctcggagagtgtggaaaaactacctt 1293
|||||||||||||||||||||| | | |||||||||| ||||||||||||| |||||||
Sbjct: 36937946 tttacaacttttgatctgggtgaagaagttcaagctc--agagtgtggaaaa-ctacctt 36937890
Query: 1294 cctgctatcaatggcattgtatttctggtggattgtg---cagaccatgaaaggctgtta 1350
|||||| ||| || ||||||| |||||||||||| | | || |||||| ||||||
Sbjct: 36937889 cctgctttcagtgtcattgtacttctggtggattttaggacggattgtgaaagactgtta 36937830
Query: 1351 gaatcaaaagaagaacttgattcactaatgacagatgaaactgttgctaacgtgcctata 1410
|||||||||| ||||| | |||||||||||||| |||||| |||||| || |||||
Sbjct: 36937829 gaatcaaaaggagaacat--ttcactaatgacagttgaaaca-ttgctagtgtatctata 36937773
Query: 1411 ttgattcttgggaataagattgacagacctgaagccatcagtgaagagaggttac-gaga 1469
|||||||| | |||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct: 36937772 ctgattcttagtaataagatcaacagacctgaagctatcagtgaagagaggttacaaaga 36937713
Query: 1470 gatgtttggtttatatggtcagacaacaggaaagggcagcgtgtctctgaa 1520
| |||||||||||||| |||||||| ||||||||| | ||||||||||
Sbjct: 36937712 ggcgtttggtttatatgatcagacaa---gaaagggcaacatgtctctgaa 36937665
>Sscrofa_Chr14
|| Length = 153851969
Score = 79.8 bits (40), Expect = 5e-12
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 1516 ctgaaggaactcaacgcccggcccttggaggtgttcatgtgcagcgtgcttaaaagacaa 1575
|||||||| || |||||||| ||| |||| |||||||||||||| ||||| || || |||
Sbjct: 79012689 ctgaaggagctgaacgcccgccccatggaagtgttcatgtgcagtgtgctcaagaggcaa 79012630
Query: 1576 ggctacggagaaggcttccgctgg 1599
|||||||| || ||||||||||||
Sbjct: 79012629 ggctacggcgagggcttccgctgg 79012606
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 56,074,773
Number of extensions: 366
Number of successful extensions: 366
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 10
Length of query: 1927
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1905
Effective length of database: 2,808,408,574
Effective search space: 5350018333470
Effective search space used: 5350018333470
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)