Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012974
(1471 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691025.1| PREDICTED: retinol dehydrogenase 11-like [Bo... 542 e-155
Alignment gi|XP_582373.4| PREDICTED: retinol dehydrogenase 11 isoform 1 [... 542 e-155
Alignment gi|NP_899207.1| retinol dehydrogenase 12 [Bos taurus]. 417 e-116
Alignment gi|NP_001068813.1| retinol dehydrogenase 13 [Bos taurus]. 255 8e-68
Alignment gi|NP_001069155.1| dehydrogenase/reductase SDR family member 13... 237 2e-62
Alignment gi|NP_001068701.1| retinol dehydrogenase 14 [Bos taurus]. 228 1e-59
Alignment gi|NP_001071560.1| WW domain-containing oxidoreductase [Bos tau... 182 9e-46
Alignment gi|NP_001095361.1| hypothetical protein LOC507942 [Bos taurus]. 173 4e-43
Alignment gi|XP_591168.4| PREDICTED: dehydrogenase/reductase (SDR family)... 134 2e-31
Alignment gi|NP_001093783.1| dehydrogenase/reductase SDR family member 12... 114 2e-25
>ref|XP_002691025.1| PREDICTED: retinol dehydrogenase 11-like [Bos taurus].
Length = 338
Score = 542 bits (1397), Expect(2) = e-155
Identities = 270/327 (82%), Positives = 286/327 (87%)
Frame = +2
Query: 161 MIGVXXXXXXXXXXXYIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELA 340
M+GV YIA PQIRKMLSSGVCTST+QLPGKVAVVTGAN GIGKETAKELA
Sbjct: 1 MVGVLLLLLLLPFLLYIAAPQIRKMLSSGVCTSTIQLPGKVAVVTGANAGIGKETAKELA 60
Query: 341 KRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLH 520
+RGARVYLACRDVQ GE VAREIQ MTGNQQVLVRKLDLADTKSIRAFAK FL EEKHLH
Sbjct: 61 RRGARVYLACRDVQNGELVAREIQMMTGNQQVLVRKLDLADTKSIRAFAKRFLEEEKHLH 120
Query: 521 ILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHM 700
ILINNAGVMMCPYSKTADGFE HMGVN +ESAPSRVVNVSSLAH +
Sbjct: 121 ILINNAGVMMCPYSKTADGFEMHMGVNHLGHFLLTHLLLEKLEESAPSRVVNVSSLAHLL 180
Query: 701 GRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH 880
GRIHFHNLQGEKFY +GLAYC+SKLAN+LFTQELARRLKGSGVT YSVHPGTV+SELVRH
Sbjct: 181 GRIHFHNLQGEKFYQSGLAYCHSKLANILFTQELARRLKGSGVTVYSVHPGTVNSELVRH 240
Query: 881 SSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA 1060
S+L+RWIWW+FSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA
Sbjct: 241 SALMRWIWWIFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA 300
Query: 1061 RRLWDVSCDLLGIPMD*RVMAVGPREA 1141
RRLWDVSCDLLGIP+D +MA GP+ +
Sbjct: 301 RRLWDVSCDLLGIPVDWLMMAAGPKRS 327
Score = 25.0 bits (53), Expect(2) = e-155
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 1132 KRSLQHTTQYSLPK 1173
KRSL+ TTQ++LPK
Sbjct: 325 KRSLKQTTQHTLPK 338
>ref|XP_582373.4| PREDICTED: retinol dehydrogenase 11 isoform 1 [Bos taurus].
Length = 338
Score = 542 bits (1397), Expect(2) = e-155
Identities = 270/327 (82%), Positives = 286/327 (87%)
Frame = +2
Query: 161 MIGVXXXXXXXXXXXYIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELA 340
M+GV YIA PQIRKMLSSGVCTST+QLPGKVAVVTGAN GIGKETAKELA
Sbjct: 1 MVGVLLLLLLLPFLLYIAAPQIRKMLSSGVCTSTIQLPGKVAVVTGANAGIGKETAKELA 60
Query: 341 KRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLH 520
+RGARVYLACRDVQ GE VAREIQ MTGNQQVLVRKLDLADTKSIRAFAK FL EEKHLH
Sbjct: 61 RRGARVYLACRDVQNGELVAREIQMMTGNQQVLVRKLDLADTKSIRAFAKRFLEEEKHLH 120
Query: 521 ILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHM 700
ILINNAGVMMCPYSKTADGFE HMGVN +ESAPSRVVNVSSLAH +
Sbjct: 121 ILINNAGVMMCPYSKTADGFEMHMGVNHLGHFLLTHLLLEKLEESAPSRVVNVSSLAHLL 180
Query: 701 GRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH 880
GRIHFHNLQGEKFY +GLAYC+SKLAN+LFTQELARRLKGSGVT YSVHPGTV+SELVRH
Sbjct: 181 GRIHFHNLQGEKFYQSGLAYCHSKLANILFTQELARRLKGSGVTVYSVHPGTVNSELVRH 240
Query: 881 SSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA 1060
S+L+RWIWW+FSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA
Sbjct: 241 SALMRWIWWIFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA 300
Query: 1061 RRLWDVSCDLLGIPMD*RVMAVGPREA 1141
RRLWDVSCDLLGIP+D +MA GP+ +
Sbjct: 301 RRLWDVSCDLLGIPVDWLMMAAGPKRS 327
Score = 25.0 bits (53), Expect(2) = e-155
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 1132 KRSLQHTTQYSLPK 1173
KRSL+ TTQ++LPK
Sbjct: 325 KRSLKQTTQHTLPK 338
>ref|NP_899207.1| retinol dehydrogenase 12 [Bos taurus].
Length = 316
Score = 417 bits (1072), Expect = e-116
Identities = 207/298 (69%), Positives = 241/298 (80%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P IRK + GVC + VQL GKV V+TGANTGIGKETA+ELA+RGARVY+ACRDV K
Sbjct: 16 YVIAPSIRKFFAGGVCRTDVQLFGKVVVITGANTGIGKETARELARRGARVYIACRDVLK 75
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GES A EIQ T N QVLVRKLDL+DTKSIRAFA+GFLAEEK LHILINNAGVM+CPYSK
Sbjct: 76 GESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSK 135
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYH 745
TADGFETH+ VN KESAP+RVVN+SS+AHH+G+I FH+LQG+K+Y+
Sbjct: 136 TADGFETHLAVNHLGHFLLTHLLLGRLKESAPARVVNLSSVAHHLGKIRFHDLQGDKYYN 195
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
G AYC+SKLANVLFT+ELA+RLKG+GVTTY+VHPG V S+LVRHS LL +W LFS F+
Sbjct: 196 LGFAYCHSKLANVLFTRELAKRLKGTGVTTYAVHPGIVRSKLVRHSFLLCLLWRLFSPFL 255
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
KT +GAQTSL+CAL EGLE LSG +FSDC WVS +ARN A RLW+VSC+LLGI
Sbjct: 256 KTTWEGAQTSLHCALAEGLEPLSGKYFSDCKKTWVSPRARNNKTAERLWNVSCELLGI 313
>ref|NP_001068813.1| retinol dehydrogenase 13 [Bos taurus].
Length = 335
Score = 255 bits (651), Expect = 8e-68
Identities = 143/304 (47%), Positives = 188/304 (61%), Gaps = 10/304 (3%)
Frame = +2
Query: 224 IRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAR 403
++ ++ G C S +PGK +VTGANTGIGK+TA ELAKRG + LACRD++K E+ A+
Sbjct: 21 LKDFVAGGACPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNIILACRDMEKCEAAAK 80
Query: 404 EIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFE 583
EI+ T N +V R LDLA KSIR FA EE+H+HILINNA VM CP+ T DGFE
Sbjct: 81 EIRGETLNHRVNARHLDLASLKSIREFAAKVTEEEEHVHILINNAAVMRCPHWTTEDGFE 140
Query: 584 THMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEK-FYHAGLAY 760
+GVN K SAPSR++NVSSLAH G I F +L EK Y AY
Sbjct: 141 MQLGVNYLGHFLLTNLLLDKLKASAPSRIINVSSLAHVAGHIDFEDLNWEKRKYDTKAAY 200
Query: 761 CNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSL---------LRWIWWLF 913
C SKLA V+ T+EL+RRL+G+GVT ++HPG +EL RH+ + L I+WL
Sbjct: 201 CQSKLAVVVSTKELSRRLQGTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWL- 259
Query: 914 SFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLL 1093
+K+P+ AQ S+Y A+ E LE +SG +F + +A +E VA+RLW S L+
Sbjct: 260 --LVKSPELAAQPSVYLAVAEELEGVSGKYFDVLKEKPPAPEAEDEEVAKRLWAESVRLV 317
Query: 1094 GIPM 1105
G+ M
Sbjct: 318 GLEM 321
>ref|NP_001069155.1| dehydrogenase/reductase SDR family member 13 precursor [Bos taurus].
Length = 377
Score = 237 bits (604), Expect = 2e-62
Identities = 139/291 (47%), Positives = 179/291 (61%), Gaps = 8/291 (2%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L G+ AVVTGAN+GIGK TA ELA+RGARV LACR ++GE+ A +++ +GN
Sbjct: 28 CRGLASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNN 87
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
+V+ LDLA S+RAFA FL+ E L ILI+NAG+ C +T + F + VN
Sbjct: 88 EVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSC--GRTREPFNLLLRVNHIG 145
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE--KFYHAGLAYCNSKLANV 784
K SAPSRVV VSS AH GR+ F L + AY NSKLANV
Sbjct: 146 PFLLTHLLLPRLKTSAPSRVVVVSSAAHRRGRLDFTRLDHPVVGWQQELRAYANSKLANV 205
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSEL-VRH-----SSLLRWIWWLFSFFIKTPQQGA 946
LF +ELA +L+G+GVT Y+ HPG V+SEL +RH LLR + WL ++ P+ GA
Sbjct: 206 LFARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWL---VLRAPRGGA 262
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
QT LYCAL EG+E LSG +F++CHV V AR++ A RLW+ S L G+
Sbjct: 263 QTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASRKLAGL 313
>ref|NP_001068701.1| retinol dehydrogenase 14 [Bos taurus].
Length = 336
Score = 228 bits (580), Expect = 1e-59
Identities = 124/292 (42%), Positives = 176/292 (60%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQ-------------N 415
GK ++TGAN+G+G+ TA EL + GARV + CRD ++ E A +++ N
Sbjct: 43 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRERAEEAAGQLRREVCPAGGPDSGPN 102
Query: 416 MTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
G +++V++LDLA S+R+F + L EE L +LINNAGV CPY KT DGFE G
Sbjct: 103 SGGAGELVVKELDLASLSSVRSFCQEMLQEEPRLDVLINNAGVFQCPYMKTEDGFEMQFG 162
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 163 VNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSFCYSRSKL 222
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP++G
Sbjct: 223 ANILFTRELARRLEGTSVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPEEG 282
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQT++Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 283 AQTAVYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 334
>ref|NP_001071560.1| WW domain-containing oxidoreductase [Bos taurus].
Length = 414
Score = 182 bits (461), Expect = 9e-46
Identities = 121/294 (41%), Positives = 160/294 (54%), Gaps = 16/294 (5%)
Frame = +2
Query: 269 LPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRK 448
L GKV VVTGAN+GIG ETAK A GA V LACR++ + I +V
Sbjct: 122 LSGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMTRANEAVSRILGEWHKAKVEAMT 181
Query: 449 LDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXX 628
LDLA +S++ FA+ F A+ LH+L+ NA V P++ T DG ET VN
Sbjct: 182 LDLALLRSVQHFAQAFKAKNVSLHVLVCNAAVFGLPWTLTKDGLETTFQVNHLGHFYLVQ 241
Query: 629 XXXXXXKESAPSRVVNVSSLAHHM-------GRIHFHNLQGEK-FYHAGLAYCNSKLANV 784
SAP+RVV VSS +H G++ F L K Y A LAY SKL N+
Sbjct: 242 LLQDVLCRSAPARVVVVSSESHRFTDINDSSGKLDFSRLSPSKNDYWAMLAYNRSKLCNI 301
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF-------FIKTPQQG 943
LF+ EL RRL GVT+ +VHPG + +S+L R WW+++ F K+ QQG
Sbjct: 302 LFSNELHRRLSPRGVTSNAVHPGN-----MMYSALHRG-WWVYTLLFTLARPFTKSMQQG 355
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLL-GIP 1102
A T++YCA+ LE L G +F+ C SA+A++E AR LW +S LL G+P
Sbjct: 356 AATTVYCAVAPELEGLGGMYFNSCCRCLPSAEAQSEDSARALWALSERLLQGVP 409
>ref|NP_001095361.1| hypothetical protein LOC507942 [Bos taurus].
Length = 330
Score = 173 bits (438), Expect = 4e-43
Identities = 108/283 (38%), Positives = 159/283 (56%), Gaps = 3/283 (1%)
Frame = +2
Query: 260 TVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVL 439
+ L GK AVVTGAN+GIGK ++ELA RGARV LACR ++G+ EIQ + + ++L
Sbjct: 44 STDLTGKTAVVTGANSGIGKAVSQELAHRGARVILACRSRERGQQALAEIQATSKSNRLL 103
Query: 440 VRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXX 619
+ ++DL+ SIR+FA+ L E +H+L+NNA V P + T +G + N
Sbjct: 104 LGEVDLSSMASIRSFAQRLLQECPEIHLLVNNAAVCGFPTTLTPEGLDLTFATNYTGPFL 163
Query: 620 XXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE-KFYHAGLAYCNSKLANVLFTQ 796
+ + +RVVNVSS G I +L G + Y SKL FT
Sbjct: 164 LTNLLQGALQRAGSARVVNVSSFRQSHGYIDEDHLIGAGRPLTFNQNYDCSKLLLASFTG 223
Query: 797 ELARRLKGSGVTTYSVHPGTVDSELVRHSS-LLRWIWWLFSFFIKTPQQGAQTSLYCALT 973
+LA+RL+G+ VT SV PG V +++++H S R+++WL SFF K +QGA LY +L
Sbjct: 224 KLAQRLQGTVVTVNSVDPGVVYTKIMKHFSWSYRFLFWLLSFFFKDSKQGAVPVLYLSLA 283
Query: 974 EGLEVLSGNHF-SDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
+ L+ +SG HF S C + A++ VA+ LW+ S L +
Sbjct: 284 KELDGISGKHFSSSCVITLPPEAAQDPHVAQSLWNTSVRLTNL 326
>ref|XP_591168.4| PREDICTED: dehydrogenase/reductase (SDR family) X-linked [Bos
taurus].
Length = 237
Score = 134 bits (338), Expect = 2e-31
Identities = 88/223 (39%), Positives = 118/223 (52%), Gaps = 12/223 (5%)
Frame = +2
Query: 467 KSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXXXXXX 646
+SIR F + F ++ LH+L+NNAGVMM P T DGFE H GVN
Sbjct: 2 RSIREFVQTFKMKKLPLHVLVNNAGVMMVPQRTTEDGFEEHFGVNYLGHFLLTNLLLDTL 61
Query: 647 KES-AP---SRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQELARRL 814
+ES AP +RVV VSS H++G ++ +LQ +Y A AY SKLA VLFT L L
Sbjct: 62 QESGAPGHSARVVTVSSATHYVGELNLDDLQSSTYYSAHAAYAQSKLALVLFTYHLQALL 121
Query: 815 KGSG--VTTYSVHPGTVDSELVRH----SSLLRWI--WWLFSFFIKTPQQGAQTSLYCAL 970
G VT PG VD++L R+ + L++ + WW+F KTP +GA TS+Y A+
Sbjct: 122 TAQGMPVTASVADPGVVDTDLYRYVFWGTRLVKKLLGWWVF----KTPDEGAWTSVYAAV 177
Query: 971 TEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
T LE L G + + + + R+LW SC L GI
Sbjct: 178 TPALEGLGGRYLYNEKETRSLEATYDPELQRQLWARSCQLTGI 220
>ref|NP_001093783.1| dehydrogenase/reductase SDR family member 12 [Bos taurus].
Length = 317
Score = 114 bits (286), Expect = 2e-25
Identities = 83/252 (32%), Positives = 123/252 (48%), Gaps = 2/252 (0%)
Frame = +2
Query: 263 VQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLV 442
VQ+PG+ +VTG N+GIGK TA E+AKRG V+L CRD + E EI +GNQ + +
Sbjct: 36 VQVPGRAFMVTGGNSGIGKATAMEIAKRGGTVHLVCRDHSRAEGAKAEIIRESGNQNIFL 95
Query: 443 RKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXX 622
+DL+ KS+ F + F +E L++LINNAG M+ T DG E + N
Sbjct: 96 HIVDLSLPKSVWKFVENF-KQEHTLNVLINNAGCMVNKRELTEDGLEKNFATNTLGVYVL 154
Query: 623 XXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAG-LAYCNSKLANVLFTQE 799
++ RV+ VSS + +++ + Q E+ G + Y +K V+ T+
Sbjct: 155 TTALIPVLEKEHDPRVITVSSGGMLVQKLNTDDPQSERTAFDGTMVYAQNKRQQVVLTER 214
Query: 800 LARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEG 979
AR + +HPG VD+ VR S + +++ QGA T L+ AL
Sbjct: 215 WAR--AHPAIHFSCMHPGWVDTPGVRLS--MPGFHARLGARLRSEAQGADTVLWLALAPA 270
Query: 980 LEVL-SGNHFSD 1012
SG F D
Sbjct: 271 ATAQPSGCFFQD 282
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,488,364
Number of extensions: 1661915
Number of successful extensions: 4390
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 4345
Number of HSP's successfully gapped: 32
Length of query: 490
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 384
Effective length of database: 14,174,046
Effective search space: 5442833664
Effective search space used: 5442833664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012974
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012974
(1471 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 ... 511 e-145
Alignment gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ... 416 e-116
Alignment gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ... 253 3e-67
Alignment gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ... 230 3e-60
Alignment gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ... 226 6e-59
Alignment gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ... 184 2e-46
Alignment gi|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (... 177 2e-44
Alignment gi|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 ... 172 1e-42
Alignment gi|XP_852623.1| PREDICTED: similar to WW domain-containing oxid... 143 4e-34
Alignment gi|XP_857503.1| PREDICTED: similar to retinol dehydrogenase 14 ... 63 8e-10
>ref|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1)
(RalR1) (Prostate short-chain dehydrogenase/reductase 1)
(Androgen-regulated short-chain dehydrogenase/reductase
1) (HCV core-binding protein HCBP12) [Canis familiaris].
Length = 337
Score = 511 bits (1317), Expect = e-145
Identities = 249/298 (83%), Positives = 270/298 (90%)
Frame = +2
Query: 215 VPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGES 394
V ++ K+LS GVCTSTVQLPGKVAVVTGANTGIGKETAKELA+RGARVYLACRDV KGE
Sbjct: 40 VDRLMKILSRGVCTSTVQLPGKVAVVTGANTGIGKETAKELAQRGARVYLACRDVLKGEL 99
Query: 395 VAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTAD 574
VAREIQ MTGN+QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPY+KT D
Sbjct: 100 VAREIQTMTGNKQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYTKTVD 159
Query: 575 GFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGL 754
GFE HMGVN KESAPSR+VNVSSLAHH+GRIHFH+LQGEKFY++GL
Sbjct: 160 GFEMHMGVNHLGHFLLTHLLLEKLKESAPSRIVNVSSLAHHLGRIHFHDLQGEKFYNSGL 219
Query: 755 AYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTP 934
AYC+SKLAN+LFTQELARRLKGSG+T YSVHPGTV SELVRHS ++W+WWLFSFFIKTP
Sbjct: 220 AYCHSKLANILFTQELARRLKGSGITAYSVHPGTVKSELVRHSPFMKWMWWLFSFFIKTP 279
Query: 935 QQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD 1108
QQGAQTSLYCA+TEGLEVLSG+HFSDC VAWVSAQARNET+ARRLWDVSCDLLGIP+D
Sbjct: 280 QQGAQTSLYCAITEGLEVLSGHHFSDCSVAWVSAQARNETIARRLWDVSCDLLGIPVD 337
>ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and 9-cis)
[Canis familiaris].
Length = 303
Score = 416 bits (1070), Expect = e-116
Identities = 206/294 (70%), Positives = 240/294 (81%)
Frame = +2
Query: 227 RKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVARE 406
RK + GVC S VQLPGKV V+TGANTGIGKETA+ELA+RGARVY+ACRDV KGES A E
Sbjct: 10 RKFFAGGVCRSNVQLPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASE 69
Query: 407 IQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFET 586
I+ T N QVLVRKLDL+DTKSIRAFA+GFLAEEK LHILINNAGVMMCPYSKTADGFET
Sbjct: 70 IRADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFET 129
Query: 587 HMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCN 766
H+GVN KES P+RVVN+SS+AHH+G+IHFH+LQGEK Y G AYC+
Sbjct: 130 HLGVNHLGHFLLTHLLLERLKESTPARVVNLSSVAHHIGKIHFHDLQGEKRYSRGFAYCH 189
Query: 767 SKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGA 946
SKLAN+LFT+ELA+RL+G+GVTTY+VHPG V SELVRHS LL +W +FS F+K+ ++GA
Sbjct: 190 SKLANMLFTRELAKRLQGTGVTTYAVHPGVVSSELVRHSFLLCLLWRIFSPFVKSAREGA 249
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD 1108
QTSL+CAL EGLE LSG +FSDC AWVS +AR+ A RLW+VSC+LLGI D
Sbjct: 250 QTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARDNKTAERLWNVSCELLGIQWD 303
>ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris].
Length = 334
Score = 253 bits (647), Expect = 3e-67
Identities = 141/304 (46%), Positives = 186/304 (61%), Gaps = 10/304 (3%)
Frame = +2
Query: 224 IRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAR 403
+R ++ G C S +PGK +VTGANTGIGK+TA ELA+RG + LACRD++K E+ A+
Sbjct: 21 LRDYIAGGACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAK 80
Query: 404 EIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFE 583
EI+ T N +V LDLA KSIR FA + EE+ +HIL+NNA VM CP+ T DGFE
Sbjct: 81 EIRGETLNHRVSAWHLDLASLKSIREFAAKIIEEEEQVHILVNNAAVMRCPHWTTKDGFE 140
Query: 584 THMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEK-FYHAGLAY 760
GVN K SAPSR++N+SSLAH G I F +L EK Y AY
Sbjct: 141 MQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWEKRKYDTKAAY 200
Query: 761 CNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSL---------LRWIWWLF 913
C SKLA +LFT+EL+RRL+G+GVT ++HPG +EL RH+ + L I+WL
Sbjct: 201 CQSKLAVILFTKELSRRLQGTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWL- 259
Query: 914 SFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLL 1093
+K+PQ AQ S Y A+ E LE +SG +F + +A +E VA+RLW S L+
Sbjct: 260 --LVKSPQLAAQPSTYLAVAEELEGVSGKYFDGLKEKAPAPEAEDEEVAQRLWAESARLV 317
Query: 1094 GIPM 1105
G+ M
Sbjct: 318 GLEM 321
>ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis
familiaris].
Length = 377
Score = 230 bits (586), Expect = 3e-60
Identities = 146/337 (43%), Positives = 192/337 (56%), Gaps = 9/337 (2%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L G+ AVVTGAN+GIGK TA ELA+RGARV LACR ++GE+ A +++ +GN
Sbjct: 28 CGGIASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNN 87
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
+V+ LDLA S+RAFA FL+ E L ILI+NAG+ C +T F + VN
Sbjct: 88 EVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSC--GRTHKPFNLLLRVNHIG 145
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE--KFYHAGLAYCNSKLANV 784
K APSRVV VSS AH GR+ F L + AY +SKLANV
Sbjct: 146 PFLLTHLLLPRLKTCAPSRVVVVSSAAHRRGRLDFTRLDRPVVGWQQELRAYADSKLANV 205
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSEL-VRH-----SSLLRWIWWLFSFFIKTPQQGA 946
LF +ELA +L+G+GVT Y+ HPG V+SEL +RH LLR + WL ++ P+ GA
Sbjct: 206 LFARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLCPLLRPLAWL---MLRAPRGGA 262
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPMD*RVMAV 1126
QT LYCAL EG+E LSG +F++CHV V AR++ A +LW+ S L G+
Sbjct: 263 QTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHQLWEASKRLAGL--------- 313
Query: 1127 GP-REACSTLLSTPCQNDSPSGWPKP*AQRLQTFHPC 1234
GP ++A + S P +PS P + PC
Sbjct: 314 GPGKDAEADEDSQPEDPRTPSSPSSPHPEEPTVSEPC 350
>ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis)
isoform 1 [Canis familiaris].
Length = 336
Score = 226 bits (575), Expect = 6e-59
Identities = 126/292 (43%), Positives = 175/292 (59%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVA----REIQNMTGNQ---- 430
GK ++TGAN+G+G+ TA L + GARV + CRD + E A RE++ G +
Sbjct: 43 GKTVLITGANSGLGRATAAALLRLGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102
Query: 431 -----QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
+++VR+LDLA +S+RAF + L EE L +LINNAG+ CPY KT DGFE G
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFG 162
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 163 VNHLGHFLLTNLLLGLLKNSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSFCYSRSKL 222
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP +G
Sbjct: 223 ANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEG 282
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQTS+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 283 AQTSVYLASSPEVEGVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 334
>ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris].
Length = 596
Score = 184 bits (467), Expect = 2e-46
Identities = 111/283 (39%), Positives = 164/283 (57%), Gaps = 3/283 (1%)
Frame = +2
Query: 260 TVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVL 439
+ L GK AVVTGAN+GIGK +ELA+RGARV LACR+ ++G+ EIQ + +L
Sbjct: 310 STDLTGKTAVVTGANSGIGKAVCQELARRGARVILACRNWERGQKALAEIQVASKGTCLL 369
Query: 440 VRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXX 619
+ ++DL+ SIR+FA+ L E +H+L+NNA + P + T +G + N
Sbjct: 370 LGQVDLSSMASIRSFARWLLQEYPEIHLLVNNAAISGFPKTLTPEGLDLTFATNYVGPFL 429
Query: 620 XXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE-KFYHAGLAYCNSKLANVLFTQ 796
+ + +RVVNVSS H G + +L G K + +Y SKL FT
Sbjct: 430 LTNLLQGALQRAGSARVVNVSSFRHAHGYVDEKHLTGAGKPLNLIQSYDCSKLLLTSFTG 489
Query: 797 ELARRLKGSGVTTYSVHPGTVDSELVR-HSSLLRWIWWLFSFFIKTPQQGAQTSLYCALT 973
ELARRL+G+GVT SV PG V +E+++ + L R+++WLFSFF K +QGA LY +L
Sbjct: 490 ELARRLQGTGVTVNSVDPGVVYTEIMKPYPWLYRFLFWLFSFFCKDVKQGAIPVLYLSLA 549
Query: 974 EGLEVLSGNHF-SDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
+ L+ +SG +F S C + + A++ VA+ LW+ S L +
Sbjct: 550 KELDGVSGKYFSSSCMITLPTEAAQDPQVAQSLWNASVQLTNL 592
>ref|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) X-linked
[Canis familiaris].
Length = 387
Score = 177 bits (450), Expect = 2e-44
Identities = 118/288 (40%), Positives = 152/288 (52%), Gaps = 12/288 (4%)
Frame = +2
Query: 272 PGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKL 451
P +VA+VTG GIG TAK LA+ G V LA + V R+IQ T N +V
Sbjct: 94 PERVAIVTGGTDGIGYSTAKHLARLGMHVILAGNNDSSAPDVVRKIQEETLNDKVEFLYC 153
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXX 631
DLA +SIR F + F ++ LH+L+NNAGVMM P T DGFE H G+N
Sbjct: 154 DLASLRSIRQFVQKFKKKKIPLHVLVNNAGVMMVPERTTEDGFEEHFGLNYLGHFLLTNL 213
Query: 632 XXXXXKES-AP---SRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQE 799
KES AP +RVV VSS H++G + +LQG + Y AY SKLA VLFT
Sbjct: 214 LLDTLKESGAPGRCARVVTVSSATHYIGELDMDDLQGSRCYSPHAAYAQSKLALVLFTYH 273
Query: 800 LARRL--KGSGVTTYSVHPGTVDSELVRH----SSLLRWI--WWLFSFFIKTPQQGAQTS 955
L R L +GS VT V PG V++ L RH + L++ + WW F KTP +GA TS
Sbjct: 274 LQRLLAAQGSPVTANVVDPGVVNTNLYRHVFWGTRLIKKLFGWW----FFKTPDEGAWTS 329
Query: 956 LYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
+Y A+T LE L G + + A + + LW SC + GI
Sbjct: 330 VYAAVTPDLEGLGGRYLYNEKETKSLAVTYDLDLQTELWARSCQMTGI 377
>ref|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis)
isoform 4 [Canis familiaris].
Length = 307
Score = 172 bits (435), Expect = 1e-42
Identities = 108/292 (36%), Positives = 155/292 (53%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVA----REIQNMTGNQ---- 430
GK ++TGAN+G+G+ TA L + GARV + CRD + E A RE++ G +
Sbjct: 43 GKTVLITGANSGLGRATAAALLRLGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102
Query: 431 -----QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
+++VR+LDLA +S+RAF + L G
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVL-----------------------------QFG 133
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 134 VNHLGHFLLTNLLLGLLKNSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSFCYSRSKL 193
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP +G
Sbjct: 194 ANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEG 253
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQTS+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 254 AQTSVYLASSPEVEGVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 305
>ref|XP_852623.1| PREDICTED: similar to WW domain-containing oxidoreductase isoform 1
[Canis familiaris].
Length = 383
Score = 143 bits (361), Expect = 4e-34
Identities = 93/243 (38%), Positives = 127/243 (52%), Gaps = 8/243 (3%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
GKV VVTGAN+GIG ETAK A GA V LACR++ + +I +V LD
Sbjct: 124 GKVVVVTGANSGIGFETAKSFALHGAHVILACRNMTRANEAVSQILGEWHKAKVEAMTLD 183
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
LA +S++ FA+ F A+ LH+L+ NA P+S T DG ET VN
Sbjct: 184 LALLRSVQHFAQAFKAKNVSLHVLVCNAAAFALPWSLTKDGLETTFQVNHLGHFYLVQLL 243
Query: 635 XXXXKESAPSRVVNVSSLAHHM-------GRIHFHNLQGEKF-YHAGLAYCNSKLANVLF 790
SAP+RVV VSS +H G++ F L K Y A LAY SKL N+LF
Sbjct: 244 QDVLCRSAPARVVVVSSESHRFTDINDSSGKLDFSRLSPSKSDYWAMLAYNRSKLCNILF 303
Query: 791 TQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFIKTPQQGAQTSLYCAL 970
+ EL RRL GVT+ +VHPG + +SS+ R WW+++ + ++ L +
Sbjct: 304 SNELHRRLSPRGVTSNAVHPGN-----MMYSSIHR-NWWVYTLLFTLARPFTKSMLLVSC 357
Query: 971 TEG 979
++G
Sbjct: 358 SDG 360
>ref|XP_857503.1| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and
9-cis) isoform 3 [Canis familiaris].
Length = 153
Score = 62.8 bits (151), Expect = 8e-10
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVA----REIQNMTGNQ---- 430
GK ++TGAN+G+G+ TA L + GARV + CRD + E A RE++ G +
Sbjct: 43 GKTVLITGANSGLGRATAAALLRLGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102
Query: 431 -----QVLVRKLDLADTKSIRAFAKGFLAEEK 511
+++VR+LDLA +S+RAF + L K
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQGRK 134
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,787,056
Number of extensions: 1704548
Number of successful extensions: 4505
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 4464
Number of HSP's successfully gapped: 28
Length of query: 490
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 383
Effective length of database: 15,307,552
Effective search space: 5862792416
Effective search space used: 5862792416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012974
(1471 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928802.1| PREDICTED: retinol dehydrogenase 11 [Sus scr... 576 e-164
Alignment gi|NP_001230331.1| retinol dehydrogenase 12 [Sus scrofa]. 418 e-117
Alignment gi|XP_003125388.1| PREDICTED: retinol dehydrogenase 14-like [Su... 226 3e-59
Alignment gi|XP_003125042.1| PREDICTED: retinol dehydrogenase 12-like [Su... 103 3e-22
Alignment gi|XP_003126896.2| PREDICTED: WW domain-containing oxidoreducta... 83 3e-16
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 64 2e-10
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 61 1e-09
Alignment gi|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reducta... 60 2e-09
Alignment gi|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like iso... 58 1e-08
Alignment gi|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like iso... 58 1e-08
>ref|XP_001928802.1| PREDICTED: retinol dehydrogenase 11 [Sus scrofa].
Length = 316
Score = 576 bits (1485), Expect = e-164
Identities = 290/316 (91%), Positives = 290/316 (91%)
Frame = +2
Query: 161 MIGVXXXXXXXXXXXYIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELA 340
MIGV YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELA
Sbjct: 1 MIGVLLLLLLLPLLLYIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELA 60
Query: 341 KRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLH 520
KRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLH
Sbjct: 61 KRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLH 120
Query: 521 ILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHM 700
ILINNAGVMMCPYSKTADGFETHMGVN KESAPSRVVNVSSLAHHM
Sbjct: 121 ILINNAGVMMCPYSKTADGFETHMGVNHLGHFLLTHLLLEKLKESAPSRVVNVSSLAHHM 180
Query: 701 GRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH 880
GRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH
Sbjct: 181 GRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH 240
Query: 881 SSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA 1060
SSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA
Sbjct: 241 SSLLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVA 300
Query: 1061 RRLWDVSCDLLGIPMD 1108
RRLWDVSCDLLGIPMD
Sbjct: 301 RRLWDVSCDLLGIPMD 316
>ref|NP_001230331.1| retinol dehydrogenase 12 [Sus scrofa].
Length = 316
Score = 418 bits (1075), Expect = e-117
Identities = 206/298 (69%), Positives = 240/298 (80%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P IRK + GVC + +QLPGKV V+TGANTGIGKETA+ELA+RGARVY+ACRDV K
Sbjct: 16 YVTAPSIRKFFAGGVCRTNMQLPGKVVVITGANTGIGKETARELARRGARVYIACRDVLK 75
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GES A EI+ T N QVLVRKLDL+DTKSIRAFA+GFL EEK LHILINNAGVM+CPYSK
Sbjct: 76 GESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSK 135
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYH 745
TADGFETH+GVN K SAP+RVVN+SS+ HH G+I FH+LQGEK Y+
Sbjct: 136 TADGFETHLGVNHLGHFLLTHLLLEQLKASAPARVVNLSSVVHHAGKIRFHDLQGEKHYN 195
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
G AYC+SKLANVLFT+ELA+RL+G+GVTTY+VHPG V SELVRHS LL +W LFS F+
Sbjct: 196 RGFAYCHSKLANVLFTRELAKRLQGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSRFL 255
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
KT ++GAQTSL+CAL EGLE LSG +FSDC AWVS +ARN A RLW+VSC+LLGI
Sbjct: 256 KTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 313
>ref|XP_003125388.1| PREDICTED: retinol dehydrogenase 14-like [Sus scrofa].
Length = 336
Score = 226 bits (575), Expect = 3e-59
Identities = 124/292 (42%), Positives = 174/292 (59%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQ-------------N 415
GK ++TGAN+G+G+ TA EL + GARV + CRD + E A +++ N
Sbjct: 43 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQTEGPEEGPN 102
Query: 416 MTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
G +++VR+LDLA +S+RAF + L EE L +LINNAG+ CPY KT DGFE
Sbjct: 103 SGGAGELVVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFA 162
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 163 VNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSFCYSRSKL 222
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP +G
Sbjct: 223 ANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPAEG 282
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQTS+Y A + +E +SG +F DC + +A +++VAR+LWD+S ++GI
Sbjct: 283 AQTSVYLASSPEVEGVSGKYFGDCKEEELLPKAMDDSVARKLWDISEVMVGI 334
>ref|XP_003125042.1| PREDICTED: retinol dehydrogenase 12-like [Sus scrofa].
Length = 181
Score = 103 bits (256), Expect = 3e-22
Identities = 51/114 (44%), Positives = 74/114 (64%)
Frame = +2
Query: 260 TVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVL 439
+ L GK AVVTGAN+GIGK ++ELA+RGARV LACR ++G+ EIQ T + ++L
Sbjct: 44 STDLTGKTAVVTGANSGIGKAVSQELARRGARVILACRSRERGQGALTEIQAATRSNRLL 103
Query: 440 VRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVN 601
+ +DL+ SIR+F + L E +H+L+NNAGV P ++T +G + N
Sbjct: 104 LGGVDLSSMASIRSFVQWLLRESPEIHLLVNNAGVSGFPRTRTPEGLDLTFATN 157
>ref|XP_003126896.2| PREDICTED: WW domain-containing oxidoreductase-like, partial [Sus
scrofa].
Length = 163
Score = 83.2 bits (204), Expect = 3e-16
Identities = 57/142 (40%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Frame = +2
Query: 515 LHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAH 694
LH+L+ NA V P+S T DG ET VN SAP+RVV VSS +H
Sbjct: 2 LHVLVCNAAVFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAPARVVVVSSESH 61
Query: 695 HM-------GRIHFHNLQ-GEKFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHP 850
G++ F L Y A LAY SKL N+LF+ EL RRL GVT+ +VHP
Sbjct: 62 RFTDINDSSGKLDFSRLSPSHSDYWAMLAYNRSKLCNILFSNELHRRLSPRGVTSNAVHP 121
Query: 851 GTVDSELVRHSSLLRWIWWLFS 916
G + SSL R WW+++
Sbjct: 122 GN-----MMFSSLHRG-WWVYT 137
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus
scrofa].
Length = 339
Score = 64.3 bits (155), Expect = 2e-10
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 6/212 (2%)
Frame = +2
Query: 266 QLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREI--QNMTGNQQVL 439
+L V VTGA++GIG+E +L+K G + L+ R VQ+ E V R + + +L
Sbjct: 47 ELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDIL 106
Query: 440 VRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGV---MMCPYSKTADGFETHMGVNXXX 610
+ LDLA+ S K L E + IL+NN GV +C + D ++ M VN
Sbjct: 107 ILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLC-VDTSLDVYKELMEVNYLG 165
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLF 790
E +++ V+S MG I L G YC SK A F
Sbjct: 166 TVSLTKCVLPHMIEKKQGKIITVNSF---MG-IIAAPLSG--------GYCASKHALRGF 213
Query: 791 TQELARRLKG-SGVTTYSVHPGTVDSELVRHS 883
L L G+T +V PG V S +V+++
Sbjct: 214 FNTLRTELATYPGITVSNVCPGPVKSNIVKNA 245
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 61.2 bits (147), Expect = 1e-09
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 6/208 (2%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
G++ ++TGA G+G+ TA E AK ++ L + E A E + + V +D
Sbjct: 36 GEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFV--VD 93
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCP--YSKTADGFETHMGVNXXXXXXXXX 628
+D + I + AK AE + IL+NNAGV+ ++ E VN
Sbjct: 94 CSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTK 153
Query: 629 XXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLF----TQ 796
++ +V V+S A H G I F LAYC+SK A V F T+
Sbjct: 154 AFLPAMMKNNHGHIVTVASAAGHAG-IPFL-----------LAYCSSKFAAVGFHKALTE 201
Query: 797 ELARRLKGSGVTTYSVHPGTVDSELVRH 880
ELA LK +GV T + P +++ +++
Sbjct: 202 ELA-ALKRTGVKTTCLCPNFINTGFIKN 228
>ref|XP_003355526.1| PREDICTED: short-chain dehydrogenase/reductase family 9C member
7-like [Sus scrofa].
Length = 313
Score = 60.5 bits (145), Expect = 2e-09
Identities = 63/226 (27%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L K +TG ++G G A++L RG RV AC E A+++Q T +
Sbjct: 17 CNVVRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFT----EEGAQKLQQDT-SY 71
Query: 431 QVLVRKLDLADTKSIRAFAKGF--LAEEKHLHILINNAGVMMCPYSK---TADGFETHMG 595
++ LD+ T+SI+A A+ E+ L L+NNAGV + T + F +
Sbjct: 72 RLQTTLLDVTKTESIKAAAQWVRDQVSEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVIN 131
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKL 775
VN K+ A RVVN+SS G + G YC SK
Sbjct: 132 VNLVGLIEVTLHMLPMVKK-ARGRVVNMSS-------------SGGRVAVIGGGYCVSKF 177
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSL---LRWIW 904
F+ + R L GV + PG + ++ SL +R +W
Sbjct: 178 GVEAFSDSIRRELHYFGVKVSIIEPGNYRTSILGKESLEMRMRKMW 223
>ref|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].
Length = 317
Score = 58.2 bits (139), Expect = 1e-08
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Frame = +2
Query: 269 LPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRK 448
L K +TG ++G G A++L RG RV AC E A++++ T ++ V
Sbjct: 27 LRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLT----EQGAQQLRKQTSDRLETV-L 81
Query: 449 LDLADTKSIRAFAKGFLAE---EKHLHILINNAGVMMCPYSK----TADGFETHMGVNXX 607
LD+ T+S+ A AK ++ E ++ L L+NNAG+ M P + T F + VN
Sbjct: 82 LDVTKTESVAA-AKEWVKERVGDRGLWGLVNNAGICM-PLAPNEWLTKQDFMVMLDVNLL 139
Query: 608 XXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVL 787
+++ RVVNVSS+ MGR+ G YC SK
Sbjct: 140 GMVDVTLQLLPLVRKT-KGRVVNVSSV---MGRVSLF----------GGGYCLSKYGVEA 185
Query: 788 FTQELARRLKGSGVTTYSVHPG 853
F+ L R L GV + PG
Sbjct: 186 FSDSLRRELSYFGVKVAMIEPG 207
>ref|XP_003355527.1| PREDICTED: retinol dehydrogenase 16-like isoform 1 [Sus scrofa].
Length = 317
Score = 58.2 bits (139), Expect = 1e-08
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Frame = +2
Query: 269 LPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRK 448
L K +TG ++G G A++L RG RV AC E A++++ T ++ V
Sbjct: 27 LRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLT----EQGAQQLRKQTSDRLETV-L 81
Query: 449 LDLADTKSIRAFAKGFLAE---EKHLHILINNAGVMMCPYSK----TADGFETHMGVNXX 607
LD+ T+S+ A AK ++ E ++ L L+NNAG+ M P + T F + VN
Sbjct: 82 LDVTKTESVAA-AKEWVKERVGDRGLWGLVNNAGICM-PLAPNEWLTKQDFMVMLDVNLL 139
Query: 608 XXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVL 787
+++ RVVNVSS+ MGR+ G YC SK
Sbjct: 140 GMVDVTLQLLPLVRKT-KGRVVNVSSV---MGRVSLF----------GGGYCLSKYGVEA 185
Query: 788 FTQELARRLKGSGVTTYSVHPG 853
F+ L R L GV + PG
Sbjct: 186 FSDSLRRELSYFGVKVAMIEPG 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,655,488
Number of extensions: 1068976
Number of successful extensions: 2868
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2843
Number of HSP's successfully gapped: 26
Length of query: 490
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,779,541
Effective search space: 3397682367
Effective search space used: 3397682367
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012974
(1471 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067532.2| retinol dehydrogenase 11 [Mus musculus]. 491 e-139
Alignment gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus]. 394 e-109
Alignment gi|NP_780581.1| retinol dehydrogenase 13 [Mus musculus]. 250 2e-66
Alignment gi|NP_899109.2| dehydrogenase/reductase SDR family member 13 pr... 228 1e-59
Alignment gi|NP_076186.1| retinol dehydrogenase 14 [Mus musculus]. 227 2e-59
Alignment gi|NP_062519.2| WW domain-containing oxidoreductase [Mus muscul... 176 5e-44
Alignment gi|NP_001028498.2| dehydrogenase/reductase SDR family member on... 172 8e-43
Alignment gi|NP_079798.2| dehydrogenase/reductase SDR family member 7 pre... 69 9e-12
Alignment gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu... 62 1e-09
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 60 3e-09
>ref|NP_067532.2| retinol dehydrogenase 11 [Mus musculus].
Length = 316
Score = 491 bits (1265), Expect = e-139
Identities = 238/301 (79%), Positives = 263/301 (87%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P+IRKMLSSGVCTS VQLPGKVA+VTGANTGIGKETAK+LA+RGARVYLACRDV K
Sbjct: 15 YLVTPKIRKMLSSGVCTSNVQLPGKVAIVTGANTGIGKETAKDLAQRGARVYLACRDVDK 74
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GE AREIQ +TGN QV VRKLDLADTKSIRAFAK FLAEEKHLH+LINNAGVMMCPYSK
Sbjct: 75 GELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSK 134
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYH 745
TADGFE H+GVN KESAPSR+VN+SSL HH+GRIHFHNLQGEKFY
Sbjct: 135 TADGFEMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNLSSLGHHLGRIHFHNLQGEKFYS 194
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
AGLAYC+SKLAN+LFT+ELA+RLKGSGVTTYSVHPGTV SEL R+SS++RW+W LF FI
Sbjct: 195 AGLAYCHSKLANILFTKELAKRLKGSGVTTYSVHPGTVHSELTRYSSIMRWLWQLFFVFI 254
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPM 1105
KTPQ+GAQTSLYCALTEGLE LSG+HFSDC +AWVS Q RNE +ARRLWDVSCDLLG+P+
Sbjct: 255 KTPQEGAQTSLYCALTEGLESLSGSHFSDCQLAWVSYQGRNEIIARRLWDVSCDLLGLPV 314
Query: 1106 D 1108
D
Sbjct: 315 D 315
>ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus].
Length = 316
Score = 394 bits (1012), Expect = e-109
Identities = 198/298 (66%), Positives = 235/298 (78%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P IRK + GVCT+ VQ+PGKV V+TGANTGIGKETA+ELA+RGARVY+ACRDV K
Sbjct: 16 YLTAPSIRKFFAGGVCTTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLK 75
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GES A EI+ T N QVLVRKLDL+DTKSIRAFA+ FLAEEK LHILINNAGVMMCPYSK
Sbjct: 76 GESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSK 135
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYH 745
T DGFETH GVN KESAP+RVVN+SS+AH +G+I FH+LQG+K Y
Sbjct: 136 TTDGFETHFGVNHLGHFLLTYLLLERLKESAPARVVNLSSIAHLIGKIRFHDLQGQKRYC 195
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
+ AY +SKLAN+LFT+ELA+RL+G+GVT Y+VHPG V SE+ R+S LL +W LFS F
Sbjct: 196 SAFAYGHSKLANLLFTRELAKRLQGTGVTAYAVHPGVVLSEITRNSYLLCLLWRLFSPFF 255
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
K+ QGAQTSL+CAL E LE LSG +FSDC WVS++ARN+ A RLW+VSC+LLGI
Sbjct: 256 KSTSQGAQTSLHCALAEDLEPLSGKYFSDCKRMWVSSRARNKKTAERLWNVSCELLGI 313
>ref|NP_780581.1| retinol dehydrogenase 13 [Mus musculus].
Length = 334
Score = 250 bits (639), Expect = 2e-66
Identities = 141/305 (46%), Positives = 183/305 (60%), Gaps = 11/305 (3%)
Frame = +2
Query: 224 IRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAR 403
++ ++ G C S +PGK +VTGANTGIGK+TA ELAKRG V LACRD++K E A+
Sbjct: 21 LKDYVAGGACPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAK 80
Query: 404 EIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFE 583
+I+ T N +V +LDLA KSIR FA+ + EE+ + IL+NNA VM CP+ T DGFE
Sbjct: 81 DIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFE 140
Query: 584 THMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE-KFYHAGLAY 760
GVN K SAPSR++N+SSLAH G I F +L + K Y AY
Sbjct: 141 MQFGVNYLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFEDLNWQMKKYDTKAAY 200
Query: 761 CNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLR----------WIWWL 910
C SKLA VLFT+EL+ RL+GSGVT ++HPG +EL RH+ + + W L
Sbjct: 201 CQSKLAVVLFTKELSHRLQGSGVTVNALHPGVARTELGRHTGMHNSAFSGFMLGPFFWLL 260
Query: 911 FSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDL 1090
F K+PQ AQ S Y A+ E LE +SG +F S +A +E VARRLW S L
Sbjct: 261 F----KSPQLAAQPSTYLAVAEELENVSGKYFDGLREKAPSPEAEDEEVARRLWTESARL 316
Query: 1091 LGIPM 1105
+G+ M
Sbjct: 317 VGLAM 321
>ref|NP_899109.2| dehydrogenase/reductase SDR family member 13 precursor [Mus
musculus].
Length = 376
Score = 228 bits (580), Expect = 1e-59
Identities = 133/291 (45%), Positives = 178/291 (61%), Gaps = 8/291 (2%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L G+ VVTGAN+GIGK TA ELA+RGARV LACR ++GE+ A +++ +GN
Sbjct: 28 CGGIGSLRGRTVVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNN 87
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
+V+ LDLA S++AFA FL+ E L +LI+NAG+ C +T + F + VN
Sbjct: 88 EVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGISSC--GRTRETFNLLLRVNHVG 145
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE--KFYHAGLAYCNSKLANV 784
+ APSRVV VSS AH GR+ F L + AY +SKLANV
Sbjct: 146 PFLLTHLLLPRLRSCAPSRVVIVSSAAHRRGRLDFTRLDCPVVGWQQELRAYADSKLANV 205
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSEL-VRH-----SSLLRWIWWLFSFFIKTPQQGA 946
LF +ELA +L+G+GVT Y+ HPG V+SEL +RH +LR + WL ++ PQ GA
Sbjct: 206 LFARELATQLEGTGVTCYAAHPGPVNSELFLRHLPGWLRPILRPLAWL---VLRAPQGGA 262
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
QT LYCAL EG+E LSG +F++CHV VS AR++ A+RLW + L G+
Sbjct: 263 QTPLYCALQEGIEPLSGRYFANCHVEEVSPAARDDQAAQRLWKATKKLAGL 313
>ref|NP_076186.1| retinol dehydrogenase 14 [Mus musculus].
Length = 334
Score = 227 bits (579), Expect = 2e-59
Identities = 127/289 (43%), Positives = 177/289 (61%), Gaps = 14/289 (4%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMT----------G 424
GK ++TGAN+G+G+ TA EL + GARV + CRD + E A +++
Sbjct: 44 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103
Query: 425 NQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNX 604
+ Q++V++LDLA +S+RAF + L EE L +LINNAGV CPY+KT DGFE GVN
Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNH 163
Query: 605 XXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANV 784
K SAPSR+V VSS + G I+F +L E+ Y+ Y SKLAN+
Sbjct: 164 LGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGEINFEDLNSEQSYNKSFCYSRSKLANI 223
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSELVRH---SSLLRWIWWLFSF-FIKTPQQGAQT 952
LFT+ELARRL+G+ VT +HPG V + L RH L R ++ L S+ F KTP +GAQT
Sbjct: 224 LFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQT 283
Query: 953 SLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
S+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++GI
Sbjct: 284 SIYLACSPDVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 332
>ref|NP_062519.2| WW domain-containing oxidoreductase [Mus musculus].
Length = 414
Score = 176 bits (445), Expect = 5e-44
Identities = 113/289 (39%), Positives = 157/289 (54%), Gaps = 13/289 (4%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
GKV +VTGAN+GIG ETAK A GA V LACR++ + I +V LD
Sbjct: 124 GKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLD 183
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
LA +S++ FA+ F A+ LH+L+ NAG P+ T DG ET VN
Sbjct: 184 LAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLL 243
Query: 635 XXXXKESAPSRVVNVSSLAHHM-------GRIHFHNLQGEKF-YHAGLAYCNSKLANVLF 790
S+P+RV+ VSS +H G++ L + Y A LAY SKL N+LF
Sbjct: 244 QDVLCRSSPARVIVVSSESHRFTDINDSSGKLDLSRLSPPRSDYWAMLAYNRSKLCNILF 303
Query: 791 TQELARRLKGSGVTTYSVHPGT-VDSELVRHSSLLRWIWWLFSFFIKTPQQGAQTSLYCA 967
+ EL RRL GVT+ +VHPG + S + R+S + + ++ L F K+ QQGA T++YCA
Sbjct: 304 SNELHRRLSPRGVTSNAVHPGNMMYSAIHRNSWVYKLLFTLARPFTKSMQQGAATTVYCA 363
Query: 968 LTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVS----CDLLGIP 1102
+ LE L G +F++C S +A++E AR LW++S D LG P
Sbjct: 364 VAPELEGLGGMYFNNCCRCLPSEEAQSEETARALWELSERLIQDRLGSP 412
>ref|NP_001028498.2| dehydrogenase/reductase SDR family member on chromosome X homolog
precursor [Mus musculus].
Length = 335
Score = 172 bits (435), Expect = 8e-43
Identities = 109/286 (38%), Positives = 151/286 (52%), Gaps = 11/286 (3%)
Frame = +2
Query: 272 PGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKL 451
PG+VA+VTGA GIG+ TA++LA+ G V +A D G+ V I+ G+ + L
Sbjct: 42 PGRVAIVTGATAGIGRSTARQLARLGMCVVVAGNDEHCGQEVVSSIRAEMGSDRAHFLPL 101
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXX 631
DLA S+R FA+ F A LH+L+NNAGVM+ P ++T DGFE H+GVN
Sbjct: 102 DLASLASVRGFARDFRALGLPLHLLVNNAGVMLEPRAETEDGFERHLGVNFLGHFLLTLL 161
Query: 632 XXXXXK----ESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQE 799
+ E SRVV V S H++G + +L G Y AY SKLA LF +
Sbjct: 162 LLPALRASGAEGRGSRVVTVGSATHYVGTVDMADLHGRHAYSPYAAYAQSKLALALFALQ 221
Query: 800 LARRL--KGSGVTTYSVHPGTVDSELVRHS-----SLLRWIWWLFSFFIKTPQQGAQTSL 958
L R L +G VT+ PG VD+EL RH+ ++ R++ WL K+P++GA T +
Sbjct: 222 LQRILDARGDPVTSNMADPGVVDTELYRHAGWVLRTVKRFLGWL---VFKSPEEGAWTLV 278
Query: 959 YCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLG 1096
Y A LE + G + D A AR++ + RRLW L G
Sbjct: 279 YAAAAPELEGVGGRYLRDEAEAEPLGTARDQELQRRLWAEGLRLTG 324
>ref|NP_079798.2| dehydrogenase/reductase SDR family member 7 precursor [Mus
musculus].
Length = 338
Score = 68.9 bits (167), Expect = 9e-12
Identities = 64/212 (30%), Positives = 93/212 (43%), Gaps = 6/212 (2%)
Frame = +2
Query: 266 QLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGN---QQV 436
+L V VTGA++GIG+E A +L+K G + L+ R Q+ E V R GN + +
Sbjct: 47 ELTDMVVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLE-NGNLKEKDI 105
Query: 437 LVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAG--VMMCPYSKTADGFETHMGVNXXX 610
LV LDL DT S A K L E + IL+NN G D F+ + +N
Sbjct: 106 LVLPLDLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLNYIG 165
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLF 790
E ++V V+S+A G YC SK A F
Sbjct: 166 TVSLTKCVLPHMIERKQGKIVTVNSIA------------GIASVSLSSGYCASKHALRGF 213
Query: 791 TQELARRL-KGSGVTTYSVHPGTVDSELVRHS 883
L L + G+T +V+PG V S++V+++
Sbjct: 214 FNALHSELGQYPGITFCNVYPGPVQSDIVKNA 245
>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
Length = 318
Score = 62.0 bits (149), Expect = 1e-09
Identities = 68/221 (30%), Positives = 98/221 (44%), Gaps = 9/221 (4%)
Frame = +2
Query: 269 LPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRK 448
L K +TG ++G G A++L +RG RV AC +KG A E++N T ++ V
Sbjct: 27 LQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACL-TEKG---AEELRNKTSDRLETV-I 81
Query: 449 LDLADTKSIRAFAKGFLAE---EKHLHILINNAGVMM---CPYSKTADGFETHMGVNXXX 610
LD+ T+SI A A ++ E + L L+NNAG+ + F + + VN
Sbjct: 82 LDVTKTESIVA-ATQWVKERVGNRGLWGLVNNAGISVPLGLSQWMNKQNFASVLDVNLLG 140
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLF 790
++ A RVVNVSS+ MGR+ H G YC SK F
Sbjct: 141 MIEVTLTMLPLVRK-ARGRVVNVSSI---MGRVSLHGNGG---------YCISKYGVEAF 187
Query: 791 TQELARRLKGSGVTTYSVHPG---TVDSELVRHSSLLRWIW 904
+ L R L GV + PG T + R SS + +W
Sbjct: 188 SDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLW 228
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 60.5 bits (145), Expect = 3e-09
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 2/207 (0%)
Frame = +2
Query: 257 STVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ-- 430
S L V VVTGA +G+G+E AK GA++ L R+V+ E ++RE+ + Q
Sbjct: 37 SKAYLRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTH 96
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
Q V DLAD +I A A L ++ +LINNAG+ Y T +T + V+
Sbjct: 97 QPFVVTFDLADPGTIAAAAAEILQCFGYVDVLINNAGI---SYRGTIS--DTIVDVDRKV 151
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLF 790
K PS V H+ + ++QG+ AY SK A F
Sbjct: 152 MEINYFGPVALTKALLPSMVERKQG---HI--VAISSIQGKISIPFRSAYSASKHATQAF 206
Query: 791 TQELARRLKGSGVTTYSVHPGTVDSEL 871
L ++ + + + PG + + L
Sbjct: 207 FDCLRAEMEEANIKVTVISPGYIHTNL 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,928,079
Number of extensions: 1418005
Number of successful extensions: 3761
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 3719
Number of HSP's successfully gapped: 31
Length of query: 490
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 385
Effective length of database: 12,463,779
Effective search space: 4798554915
Effective search space used: 4798554915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012974
(1471 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057110.3| retinol dehydrogenase 11 [Homo sapiens]. 535 e-152
Alignment gi|NP_689656.2| retinol dehydrogenase 12 [Homo sapiens]. 419 e-117
Alignment gi|NP_001139443.1| retinol dehydrogenase 13 isoform 1 [Homo sap... 249 5e-66
Alignment gi|NP_065956.1| retinol dehydrogenase 14 [Homo sapiens]. 228 1e-59
Alignment gi|NP_653284.2| dehydrogenase/reductase SDR family member 13 pr... 227 2e-59
Alignment gi|NP_612421.1| retinol dehydrogenase 13 isoform 2 [Homo sapien... 188 1e-47
Alignment gi|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [... 177 2e-44
Alignment gi|NP_660160.2| dehydrogenase/reductase SDR family member on ch... 171 2e-42
Alignment gi|NP_001186032.1| NT5C1B-RDH14 protein isoform 1 [Homo sapiens]. 169 8e-42
Alignment gi|NP_078981.1| dehydrogenase/reductase SDR family member 12 is... 70 4e-12
>ref|NP_057110.3| retinol dehydrogenase 11 [Homo sapiens].
Length = 318
Score = 535 bits (1379), Expect = e-152
Identities = 259/301 (86%), Positives = 278/301 (92%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+A PQIRKMLSSGVCTSTVQLPGKV VVTGANTGIGKETAKELA+RGARVYLACRDV+K
Sbjct: 18 YMAAPQIRKMLSSGVCTSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEK 77
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GE VA+EIQ TGNQQVLVRKLDL+DTKSIRAFAKGFLAEEKHLH+LINNAGVMMCPYSK
Sbjct: 78 GELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSK 137
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYH 745
TADGFE H+GVN KESAPSR+VNVSSLAHH+GRIHFHNLQGEKFY+
Sbjct: 138 TADGFEMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYN 197
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
AGLAYC+SKLAN+LFTQELARRLKGSGVTTYSVHPGTV SELVRHSS +RW+WWLFSFFI
Sbjct: 198 AGLAYCHSKLANILFTQELARRLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFI 257
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGIPM 1105
KTPQQGAQTSL+CALTEGLE+LSGNHFSDCHVAWVSAQARNET+ARRLWDVSCDLLG+P+
Sbjct: 258 KTPQQGAQTSLHCALTEGLEILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLLGLPI 317
Query: 1106 D 1108
D
Sbjct: 318 D 318
>ref|NP_689656.2| retinol dehydrogenase 12 [Homo sapiens].
Length = 316
Score = 419 bits (1077), Expect = e-117
Identities = 210/298 (70%), Positives = 240/298 (80%)
Frame = +2
Query: 206 YIAVPQIRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQK 385
Y+ P IRK + GVC + VQLPGKV V+TGANTGIGKETA+ELA RGARVY+ACRDV K
Sbjct: 16 YMVAPSIRKFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELASRGARVYIACRDVLK 75
Query: 386 GESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSK 565
GES A EI+ T N QVLVRKLDL+DTKSIRAFA+GFLAEEK LHILINNAGVMMCPYSK
Sbjct: 76 GESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSK 135
Query: 566 TADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYH 745
TADGFETH+GVN K SAP+RVVNVSS+AHH+G+I FH+LQ EK Y
Sbjct: 136 TADGFETHLGVNHLGHFLLTYLLLERLKVSAPARVVNVSSVAHHIGKIPFHDLQSEKRYS 195
Query: 746 AGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSFFI 925
G AYC+SKLANVLFT+ELA+RL+G+GVTTY+VHPG V SELVRHSSLL +W LFS F+
Sbjct: 196 RGFAYCHSKLANVLFTRELAKRLQGTGVTTYAVHPGVVRSELVRHSSLLCLLWRLFSPFV 255
Query: 926 KTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
KT ++GAQTSL+CAL EGLE LSG +FSDC WVS +ARN A RLW+VSC+LLGI
Sbjct: 256 KTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVSPRARNNKTAERLWNVSCELLGI 313
>ref|NP_001139443.1| retinol dehydrogenase 13 isoform 1 [Homo sapiens].
Length = 331
Score = 249 bits (636), Expect = 5e-66
Identities = 140/302 (46%), Positives = 185/302 (61%), Gaps = 10/302 (3%)
Frame = +2
Query: 224 IRKMLSSGVCTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAR 403
++ ++ G C S +PGK +VTGANTGIGK+TA ELA+RG + LACRD++K E+ A+
Sbjct: 21 LKDYVTGGACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAK 80
Query: 404 EIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFE 583
+I+ T N V R LDLA KSIR FA + EE+ + ILINNAGVM CP+ T DGFE
Sbjct: 81 DIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFE 140
Query: 584 THMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE-KFYHAGLAY 760
GVN K SAPSR++N+SSLAH G I F +L + + Y+ AY
Sbjct: 141 MQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAY 200
Query: 761 CNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH---------SSLLRWIWWLF 913
C SKLA VLFT+EL+RRL+GSGVT ++HPG +EL RH S+ L I+WL
Sbjct: 201 CQSKLAIVLFTKELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWL- 259
Query: 914 SFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLL 1093
+K+P+ AQ S Y A+ E L +SG +F + +A +E VARRLW S L+
Sbjct: 260 --LVKSPELAAQPSTYLAVAEELADVSGKYFDGLKQKAPAPEAEDEEVARRLWAESARLV 317
Query: 1094 GI 1099
G+
Sbjct: 318 GL 319
>ref|NP_065956.1| retinol dehydrogenase 14 [Homo sapiens].
Length = 336
Score = 228 bits (580), Expect = 1e-59
Identities = 124/292 (42%), Positives = 176/292 (60%), Gaps = 17/292 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQN------------- 415
GK ++TGAN+G+G+ TA EL + GARV + CRD + E A +++
Sbjct: 43 GKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102
Query: 416 MTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMG 595
++G +++VR+LDLA +S+RAF + L EE L +LINNAG+ CPY KT DGFE G
Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFG 162
Query: 596 VNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKL 775
VN K SAPSR+V VSS + G I+F +L E+ Y+ Y SKL
Sbjct: 163 VNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYGDINFDDLNSEQSYNKSFCYSRSKL 222
Query: 776 ANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQG 943
AN+LFT+ELARRL+G+ VT +HPG V + L RH + + LF+ F KTP +G
Sbjct: 223 ANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEG 282
Query: 944 AQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
AQTS+Y A + +E +SG +F DC + +A +E+VAR+LWD+S ++G+
Sbjct: 283 AQTSIYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGL 334
>ref|NP_653284.2| dehydrogenase/reductase SDR family member 13 precursor [Homo
sapiens].
Length = 377
Score = 227 bits (578), Expect = 2e-59
Identities = 134/291 (46%), Positives = 177/291 (60%), Gaps = 8/291 (2%)
Frame = +2
Query: 251 CTSTVQLPGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQ 430
C L G+ AVVTGAN+GIGK TA ELA+RGARV LACR ++GE+ A +++ +GN
Sbjct: 28 CGGMGNLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSQERGEAAAFDLRQESGNN 87
Query: 431 QVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXX 610
+V+ LDLA S+RAFA FL+ E L ILI+NAG+ C +T + F + VN
Sbjct: 88 EVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSC--GRTREAFNLLLRVNHIG 145
Query: 611 XXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE--KFYHAGLAYCNSKLANV 784
K APSRVV V+S AH GR+ F L + AY ++KLANV
Sbjct: 146 PFLLTHLLLPCLKACAPSRVVVVASAAHCRGRLDFKRLDRPVVGWRQELRAYADTKLANV 205
Query: 785 LFTQELARRLKGSGVTTYSVHPGTVDSEL-VRH-----SSLLRWIWWLFSFFIKTPQQGA 946
LF +ELA +L+ +GVT Y+ HPG V+SEL +RH LLR + WL ++ P+ GA
Sbjct: 206 LFARELANQLEATGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWL---VLRAPRGGA 262
Query: 947 QTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
QT LYCAL EG+E LSG +F++CHV V AR++ A RLW+ S L G+
Sbjct: 263 QTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASKRLAGL 313
>ref|NP_612421.1| retinol dehydrogenase 13 isoform 2 [Homo sapiens].
Length = 260
Score = 188 bits (477), Expect = 1e-47
Identities = 112/251 (44%), Positives = 148/251 (58%), Gaps = 10/251 (3%)
Frame = +2
Query: 377 VQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCP 556
++K E+ A++I+ T N V R LDLA KSIR FA + EE+ + ILINNAGVM CP
Sbjct: 1 MEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCP 60
Query: 557 YSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGE- 733
+ T DGFE GVN K SAPSR++N+SSLAH G I F +L +
Sbjct: 61 HWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQT 120
Query: 734 KFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRH---------SS 886
+ Y+ AYC SKLA VLFT+EL+RRL+GSGVT ++HPG +EL RH S+
Sbjct: 121 RKYNTKAAYCQSKLAIVLFTKELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSST 180
Query: 887 LLRWIWWLFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARR 1066
L I+WL +K+P+ AQ S Y A+ E L +SG +F + +A +E VARR
Sbjct: 181 TLGPIFWL---LVKSPELAAQPSTYLAVAEELADVSGKYFDGLKQKAPAPEAEDEEVARR 237
Query: 1067 LWDVSCDLLGI 1099
LW S L+G+
Sbjct: 238 LWAESARLVGL 248
>ref|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [Homo sapiens].
Length = 414
Score = 177 bits (449), Expect = 2e-44
Identities = 112/284 (39%), Positives = 150/284 (52%), Gaps = 15/284 (5%)
Frame = +2
Query: 275 GKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 454
GKV VVTGAN+GIG ETAK A GA V LACR++ + I +V LD
Sbjct: 124 GKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLD 183
Query: 455 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXX 634
LA +S++ FA+ F A+ LH+L+ NA P+S T DG ET VN
Sbjct: 184 LALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLL 243
Query: 635 XXXXKESAPSRVVNVSSLAHH-------MGRIHFHNLQGEK-FYHAGLAYCNSKLANVLF 790
SAP+RV+ VSS +H +G++ F L K Y A LAY SKL N+LF
Sbjct: 244 QDVLCRSAPARVIVVSSESHRFTDINDSLGKLDFSRLSPTKNDYWAMLAYNRSKLCNILF 303
Query: 791 TQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLFSF-------FIKTPQQGAQ 949
+ EL RRL GVT+ +VHPG + + S WW+++ F K+ QQGA
Sbjct: 304 SNELHRRLSPRGVTSNAVHPGNMMYSNIHRS------WWVYTLLFTLARPFTKSMQQGAA 357
Query: 950 TSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVS 1081
T++YCA LE L G +F++C S +A++E AR LW +S
Sbjct: 358 TTVYCAAVPELEGLGGMYFNNCCRCMPSPEAQSEETARTLWALS 401
>ref|NP_660160.2| dehydrogenase/reductase SDR family member on chromosome X precursor
[Homo sapiens].
Length = 330
Score = 171 bits (433), Expect = 2e-42
Identities = 109/290 (37%), Positives = 150/290 (51%), Gaps = 14/290 (4%)
Frame = +2
Query: 272 PGKVAVVTGANTGIGKETAKELAKRGARVYLACRDVQKGESVAREIQNMTGNQQVLVRKL 451
P +VA+VTG GIG TAK LA+ G V +A + K + V +I+ T N +V
Sbjct: 42 PDRVAIVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYC 101
Query: 452 DLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXX 631
DLA SIR F + F ++ LH+LINNAGVMM P KT DGFE H G+N
Sbjct: 102 DLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNL 161
Query: 632 XXXXXKESA----PSRVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQE 799
KES +RVV VSS H++ ++ +LQ Y AY SKLA VLFT
Sbjct: 162 LLDTLKESGSPGHSARVVTVSSATHYVAELNMDDLQSSACYSPHAAYAQSKLALVLFTYH 221
Query: 800 LARRL--KGSGVTTYSVHPGTVDSELVRH--------SSLLRWIWWLFSFFIKTPQQGAQ 949
L R L +GS VT V PG V++++ +H LL W+ KTP +GA
Sbjct: 222 LQRLLAAEGSHVTANVVDPGVVNTDVYKHVFWATRLAKKLLGWL------LFKTPDEGAW 275
Query: 950 TSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARRLWDVSCDLLGI 1099
TS+Y A+T LE + G++ + N+ + ++LW SC++ G+
Sbjct: 276 TSIYAAVTPELEGVGGHYLYNEKETKSLHVTYNQKLQQQLWSKSCEMTGV 325
>ref|NP_001186032.1| NT5C1B-RDH14 protein isoform 1 [Homo sapiens].
Length = 650
Score = 169 bits (427), Expect = 8e-42
Identities = 92/209 (44%), Positives = 125/209 (59%), Gaps = 4/209 (1%)
Frame = +2
Query: 485 AKGFLAEEKHLHILINNAGVMMCPYSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPS 664
+K EE L +LINNAG+ CPY KT DGFE GVN K SAPS
Sbjct: 440 SKPLAQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAPS 499
Query: 665 RVVNVSSLAHHMGRIHFHNLQGEKFYHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSV 844
R+V VSS + G I+F +L E+ Y+ Y SKLAN+LFT+ELARRL+G+ VT +
Sbjct: 500 RIVVVSSKLYKYGDINFDDLNSEQSYNKSFCYSRSKLANILFTRELARRLEGTNVTVNVL 559
Query: 845 HPGTVDSELVRHSSLLRWIWWLFSF----FIKTPQQGAQTSLYCALTEGLEVLSGNHFSD 1012
HPG V + L RH + + LF+ F KTP +GAQTS+Y A + +E +SG +F D
Sbjct: 560 HPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVEGVSGRYFGD 619
Query: 1013 CHVAWVSAQARNETVARRLWDVSCDLLGI 1099
C + +A +E+VAR+LWD+S ++G+
Sbjct: 620 CKEEELLPKAMDESVARKLWDISEVMVGL 648
>ref|NP_078981.1| dehydrogenase/reductase SDR family member 12 isoform 2 [Homo
sapiens].
Length = 242
Score = 70.5 bits (171), Expect = 4e-12
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 1/211 (0%)
Frame = +2
Query: 377 VQKGESVAREIQNMTGNQQVLVRKLDLADTKSIRAFAKGFLAEEKHLHILINNAGVMMCP 556
+++ ++A+++ + ++ + + +DL+D K I F + F E K LH+LINNAG M+
Sbjct: 25 LEETAALAKQLPLKSPSENIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNK 83
Query: 557 YSKTADGFETHMGVNXXXXXXXXXXXXXXXKESAPSRVVNVSSLAHHMGRIHFHNLQGEK 736
T DG E + N ++ RV+ VSS + +++ ++LQ E+
Sbjct: 84 RELTEDGLEKNFAANTLGVYILTTGLIPVLEKEHDPRVITVSSGGMLVQKLNTNDLQSER 143
Query: 737 F-YHAGLAYCNSKLANVLFTQELARRLKGSGVTTYSVHPGTVDSELVRHSSLLRWIWWLF 913
+ + Y +K V+ T+ A+ + S+HPG D+ VR + + F
Sbjct: 144 TPFDGTMVYAQNKRQQVVLTERWAQ--GHPAIHFSSMHPGWADTPGVRQA--MPGFHARF 199
Query: 914 SFFIKTPQQGAQTSLYCALTEGLEVLSGNHF 1006
+++ QGA T L+ AL+ F
Sbjct: 200 GDRLRSEAQGADTMLWLALSSAAAAQPSGRF 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,899,174
Number of extensions: 1689432
Number of successful extensions: 4475
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 4436
Number of HSP's successfully gapped: 34
Length of query: 490
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 383
Effective length of database: 14,770,016
Effective search space: 5656916128
Effective search space used: 5656916128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012974
(1471 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 876 0.0
Sscrofa_ChrX 62 9e-07
>Sscrofa_Chr07
|| Length = 134764511
Score = 876 bits (442), Expect = 0.0
Identities = 461/466 (98%), Gaps = 1/466 (0%)
Strand = Plus / Minus
Query: 1006 cagtgactgccatgtggcatgggtctctgcccaggctcgtaacgagacagtagcaaggcg 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97724199 cagtgactgccatgtggcatgggtctctgcccaggctcgtaacgagacagtagcaaggcg 97724140
Query: 1066 gctatgggatgtcagctgtgacctgctgggcatccctatggattgacgggtgatggcagt 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97724139 gctatgggatgtcagctgtgacctgctgggcatccctatggattgacgggtgatggcagt 97724080
Query: 1126 tggaccaagagaagcctgcagcacactactcagtactccctgccaaaatgattctccttc 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97724079 tggaccaagagaagcctgcagcacactactcagtactccctgccaaaatgattctccttc 97724020
Query: 1186 aggatggccaaaaccttgagcacaaagactgcaaaccttccatccttgcctgcttgatgt 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97724019 aggatggccaaaaccttgagcacaaagactgcaaaccttccatccttgcctgcttgatgt 97723960
Query: 1246 tggataaaagcccagtgtacactgccagactcatctaaacgccttgcatttgtctagatg 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97723959 tggataaaagcccagtgtacactgccagactcatctaaacgccttgcatttgtctagatt 97723900
Query: 1306 tattttgttcctattactgccagagttaccagagataatgtaaggaaaggtggaccctca 1365
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 97723899 tattttgttcctattactgccagagttaccagagataatgt-aggataggtggaccctca 97723841
Query: 1366 tatgcctgccaccatatgaccgcttgtattttccctctgaaacctactacctaggagagc 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97723840 tatgcctgccaccatatgaccgcttgtattttccctctgaaacctactacctaggagagc 97723781
Query: 1426 cctagctatggcagggttgatttacagcactttagatttgtttctg 1471
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97723780 ctaagctatggcagggttgatttacagcactttagatttgtttctg 97723735
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 1 ctttttgccctaaaccgggctttggactacatttcccagatggctttgcttcccggcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97759848 ctttttgccctaaaccgggctttggactacatttcccagatggctttgcttcccggcctg 97759789
Query: 61 tgctactttatcagggcgtgtcttggaagagaagcccaatcccctagctacgctgggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97759788 tgctactttatcagggcgtgtcttggaagagaagcccaatcccctagctacgctgggacc 97759729
Query: 121 tctcgctgcgcttcagcagccgcagctgcctctaggcaagatgattggggtcctgctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97759728 tctcgctgcgcttcagcagccgcagctgcctctaggcaagatgattggggtcctgctcct 97759669
Query: 181 gctccttcttctccctttgctcctgtacatcgctgtaccccaaatcagg 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97759668 gctccttcttctccctttgctcctgtacatcgctgtaccccaaatcagg 97759620
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Minus
Query: 606 taggtcacttcctcctgacccatctgttactagagaagctgaaggaatcagccccatcaa 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97743264 taggtcacttcctcctgacccatctgttactagagaagctgaaggaatcagccccatcaa 97743205
Query: 666 gggtagtgaatgtgtcttccttagcacatcacatgggaaggatccacttccataacctgc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97743204 gggtagtgaatgtgtcttccttagcacatcacatgggaaggatccacttccataacctgc 97743145
Query: 726 agggtgagaagttctaccatgcgggtctggcctactgtaacagcaagttagccaatgttc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97743144 agggtgagaagttctaccatgcgggtctggcctactgtaacagcaagttagccaatgttc 97743085
Query: 786 tcttcacccaggaactggcccggaggctaaaagg 819
||||||||||||||||||||||||||||||||||
Sbjct: 97743084 tcttcacccaggaactggcccggaggctaaaagg 97743051
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 817 aggctctggcgttacaacatactcagtacaccctggcacagttgactctgaattggttcg 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97739855 aggctctggcgttacaacatactcagtacaccctggcacagttgactctgaattggttcg 97739796
Query: 877 gcactcatccctcctgagatggatttggtggcttttctccttcttcatcaagacccctca 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97739795 gcactcatccctcctgagatggatttggtggcttttctccttcttcatcaagacccctca 97739736
Query: 937 gcagggagcccagaccagcctgtactgtgccttaacagaaggtcttgaggttctaagtgg 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97739735 gcagggagcccagaccagcctgtactgtgccttaacagaaggtcttgaggttctaagtgg 97739676
Query: 997 aaaccatttcag 1008
||||||||||||
Sbjct: 97739675 aaaccatttcag 97739664
Score = 305 bits (154), Expect = 4e-80
Identities = 157/158 (99%)
Strand = Plus / Minus
Query: 346 aggagcccgtgtatatttagcctgccgggatgtgcaaaagggggaatcggtggccagaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 97746030 aggagcccgtgtatatttagcctgccgggatgtgcaaaagggggaatcggtagccagaga 97745971
Query: 406 aatccagaacatgacaggaaaccaacaggtattggtgcggaaactggacctggctgatac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97745970 aatccagaacatgacaggaaaccaacaggtattggtgcggaaactggacctggctgatac 97745911
Query: 466 taaatctattcgagcttttgctaagggcttcttagcag 503
||||||||||||||||||||||||||||||||||||||
Sbjct: 97745910 taaatctattcgagcttttgctaagggcttcttagcag 97745873
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 226 caggaaaatgctgtccagcggggtgtgtacatcaaccgtccagcttcctgggaaggtcgc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97747304 caggaaaatgctgtccagcggggtgtgtacatcaaccgtccagcttcctgggaaggtcgc 97747245
Query: 286 tgtggtcactggagccaacacaggcattgggaaggagacggccaaagagctggctaaaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97747244 tgtggtcactggagccaacacaggcattgggaaggagacggccaaagagctggctaaaag 97747185
Query: 346 agg 348
|||
Sbjct: 97747184 agg 97747182
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 500 gcagaagaaaagcatctccacattttgatcaacaatgcaggagtgatgatgtgtccttac 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97744137 gcagaagaaaagcatctccacattttgatcaacaatgcaggagtgatgatgtgtccttac 97744078
Query: 560 tccaagacagcagacggctttgagacgcacatgggagtcaaccacttaggt 610
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97744077 tccaagacagcagacggctttgagacgcacatgggagtcaaccacttaggt 97744027
Score = 109 bits (55), Expect = 4e-21
Identities = 88/99 (88%)
Strand = Plus / Plus
Query: 506 gaaaagcatctccacattttgatcaacaatgcaggagtgatgatgtgtccttactccaag 565
|||||||| ||||| ||| ||||||||||||| ||||||||| ||||||| || ||||||
Sbjct: 97791855 gaaaagcagctccatattctgatcaacaatgctggagtgatgttgtgtccatattccaag 97791914
Query: 566 acagcagacggctttgagacgcacatgggagtcaaccac 604
||||| || ||||||||||| ||| ||||||||||||||
Sbjct: 97791915 acagcggatggctttgagacccacctgggagtcaaccac 97791953
Score = 60.0 bits (30), Expect = 4e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 438 tggtgcggaaactggacctggctgatactaaatctattcgagcttttgctaagggctt 495
||||||||||||||||||| ||||||| ||||| || ||||| |||||| |||||||
Sbjct: 97791131 tggtgcggaaactggacctctctgataccaaatccatccgagcctttgctgagggctt 97791188
>Sscrofa_ChrX
|| Length = 144288218
Score = 61.9 bits (31), Expect = 9e-07
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 507 aaaagcatctccacattttgatcaacaatgcaggagtgatgatgtgtccttactccaaga 566
||||||| |||| ||| |||||| ||| ||||||||||||||||| | || |||||||
Sbjct: 47505256 aaaagcagctccgtattctgatcagcaacacaggagtgatgatgtgttcatattccaaga 47505315
Query: 567 cagcagacggctttgagacgcacatgggagtcaac 601
|||| || |||||||| || ||| ||||| |||||
Sbjct: 47505316 cagccgatggctttgaaacccacctgggaatcaac 47505350
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,120,083
Number of extensions: 309
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 10
Length of query: 1471
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1450
Effective length of database: 2,808,413,156
Effective search space: 4072199076200
Effective search space used: 4072199076200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)