Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012979
(2066 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538170.2| PREDICTED: similar to Programmed cell death pro... 1063 0.0
Alignment gi|XP_865797.1| PREDICTED: similar to Programmed cell death pro... 1057 0.0
Alignment gi|XP_865782.1| PREDICTED: similar to Programmed cell death pro... 1053 0.0
Alignment gi|XP_865765.1| PREDICTED: similar to Programmed cell death pro... 1039 0.0
Alignment gi|XP_865808.1| PREDICTED: similar to programmed cell death 8 i... 984 0.0
Alignment gi|XP_865748.1| PREDICTED: similar to programmed cell death 8 i... 506 e-151
Alignment gi|XP_543566.2| PREDICTED: similar to apoptosis-inducing factor... 90 9e-18
>ref|XP_538170.2| PREDICTED: similar to Programmed cell death protein 8, mitochondrial
precursor (Apoptosis-inducing factor) isoform 1 [Canis
familiaris].
Length = 613
Score = 1063 bits (2750), Expect(2) = 0.0
Identities = 532/586 (90%), Positives = 545/586 (93%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLPGNLFQRWHVPLELQM RQMASSGAS
Sbjct: 1 MFRCGSLAAGAFKQKLAPLVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMARQMASSGAS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLSTIGAGAYAY+TIKD++KRY+ER++GLGLTPEEKQKRATS APEG
Sbjct: 61 GGKIDNSVLVLIVGLSTIGAGAYAYKTIKDDQKRYDERMSGLGLTPEEKQKRATSPAPEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
EPVPQVRVPSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EPVPQVRVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYV+AQDLPHIENGGVAVLTGKKVV LDVRG
Sbjct: 181 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVAAQDLPHIENGGVAVLTGKKVVHLDVRG 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
NM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV
Sbjct: 241 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 1279
KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWT EKVRREG
Sbjct: 301 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTTEKVRREG 360
Query: 1280 VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 1459
VKVLPNAIVQSVGVSGG+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
Sbjct: 361 VKVLPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 420
Query: 1460 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 1639
FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
Sbjct: 421 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 480
Query: 1640 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE 1819
MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA E
Sbjct: 481 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASE 540
Query: 1820 ITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
I +P +PAVPQ P GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 541 IAVPPSNPAVPQTPAQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 586
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 585 MPIARKIIKDGEQHEDLNEVAKLF 608
>ref|XP_865797.1| PREDICTED: similar to Programmed cell death protein 8, mitochondrial
precursor (Apoptosis-inducing factor) isoform 5 [Canis
familiaris].
Length = 615
Score = 1057 bits (2733), Expect(2) = 0.0
Identities = 531/588 (90%), Positives = 544/588 (92%), Gaps = 2/588 (0%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLPGNLFQRWHVPLELQM RQMASSGAS
Sbjct: 1 MFRCGSLAAGAFKQKLAPLVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMARQMASSGAS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLSTIGAGAYAY+TIKD++KRY+ER++GLGLTPEEKQKRATS APEG
Sbjct: 61 GGKIDNSVLVLIVGLSTIGAGAYAYKTIKDDQKRYDERMSGLGLTPEEKQKRATSPAPEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
EPVPQVRVPSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EPVPQVRVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYV+AQDLPHIENGGVAVLTGKKVV LDVRG
Sbjct: 181 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVAAQDLPHIENGGVAVLTGKKVVHLDVRG 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
NM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV
Sbjct: 241 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRK--ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR 1273
KSITIIGGGFLGSELACALGRK RALGTEVIQLFPEKGNMGKILPEYLSNWT EKVRR
Sbjct: 301 KSITIIGGGFLGSELACALGRKDVTRALGTEVIQLFPEKGNMGKILPEYLSNWTTEKVRR 360
Query: 1274 EGVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDF 1453
EGVKVLPNAIVQSVGVSGG+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDF
Sbjct: 361 EGVKVLPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDF 420
Query: 1454 GGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWH 1633
GGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWH
Sbjct: 421 GGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWH 480
Query: 1634 QSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA 1813
QSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA
Sbjct: 481 QSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA 540
Query: 1814 PEITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
EI +P +PAVPQ P GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 541 SEIAVPPSNPAVPQTPAQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 588
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 587 MPIARKIIKDGEQHEDLNEVAKLF 610
>ref|XP_865782.1| PREDICTED: similar to Programmed cell death protein 8, mitochondrial
precursor (Apoptosis-inducing factor) isoform 4 [Canis
familiaris].
Length = 613
Score = 1053 bits (2724), Expect(2) = 0.0
Identities = 527/586 (89%), Positives = 540/586 (92%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLPGNLFQRWHVPLELQM RQMASSGAS
Sbjct: 1 MFRCGSLAAGAFKQKLAPLVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMARQMASSGAS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLSTIGAGAYAY+TIKD++KRY+ER++GLGLTPEEKQKRATS APEG
Sbjct: 61 GGKIDNSVLVLIVGLSTIGAGAYAYKTIKDDQKRYDERMSGLGLTPEEKQKRATSPAPEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
EPVPQVRVPSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EPVPQVRVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYV+AQDLPHIENGGVAVLTGKKVV LDVRG
Sbjct: 181 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVAAQDLPHIENGGVAVLTGKKVVHLDVRG 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
NM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV
Sbjct: 241 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 1279
KSITIIGGGFLGSELACALGRK G EVIQLFPEKGNMGKILPEYLSNWT EKVRREG
Sbjct: 301 KSITIIGGGFLGSELACALGRKGERSGLEVIQLFPEKGNMGKILPEYLSNWTTEKVRREG 360
Query: 1280 VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 1459
VKVLPNAIVQSVGVSGG+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
Sbjct: 361 VKVLPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 420
Query: 1460 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 1639
FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
Sbjct: 421 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 480
Query: 1640 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE 1819
MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA E
Sbjct: 481 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASE 540
Query: 1820 ITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
I +P +PAVPQ P GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 541 IAVPPSNPAVPQTPAQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 586
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 585 MPIARKIIKDGEQHEDLNEVAKLF 608
>ref|XP_865765.1| PREDICTED: similar to Programmed cell death protein 8, mitochondrial
precursor (Apoptosis-inducing factor) isoform 3 [Canis
familiaris].
Length = 644
Score = 1039 bits (2687), Expect(2) = 0.0
Identities = 528/617 (85%), Positives = 541/617 (87%), Gaps = 31/617 (5%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLPGNLFQRWHVPLELQM RQMASSGAS
Sbjct: 1 MFRCGSLAAGAFKQKLAPLVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMARQMASSGAS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLSTIGAGAYAY+TIKD++KRY+ER++GLGLTPEEKQKRATS APEG
Sbjct: 61 GGKIDNSVLVLIVGLSTIGAGAYAYKTIKDDQKRYDERMSGLGLTPEEKQKRATSPAPEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
EPVPQVRVPSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EPVPQVRVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYV+AQDLPHIENGGVAVLTGKKVV LDVRG
Sbjct: 181 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVAAQDLPHIENGGVAVLTGKKVVHLDVRG 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
NM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV
Sbjct: 241 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRKA-------------------------------RALGTE 1186
KSITIIGGGFLGSELACALGRK R G E
Sbjct: 301 KSITIIGGGFLGSELACALGRKGDSWCVVKSRDDRSGTCCVCPVGVLVPQCPKNRRSGLE 360
Query: 1187 VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIKLKDGRKV 1366
VIQLFPEKGNMGKILPEYLSNWT EKVRREGVKVLPNAIVQSVGVSGG+LLIKLKDGRKV
Sbjct: 361 VIQLFPEKGNMGKILPEYLSNWTTEKVRREGVKVLPNAIVQSVGVSGGRLLIKLKDGRKV 420
Query: 1367 ETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGR 1546
ETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGR
Sbjct: 421 ETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGR 480
Query: 1547 RRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFA 1726
RRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFA
Sbjct: 481 RRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFA 540
Query: 1727 KATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTPGEDYGKGVIFYLR 1906
KATAQDNPKSATEQSGTGIRSESETESEA EI +P +PAVPQ P GEDYGKGVIFYLR
Sbjct: 541 KATAQDNPKSATEQSGTGIRSESETESEASEIAVPPSNPAVPQTPAQGEDYGKGVIFYLR 600
Query: 1907 DKVVVGIVLWNVFHRFP 1957
DKVVVGIVLWN+F+R P
Sbjct: 601 DKVVVGIVLWNIFNRMP 617
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 616 MPIARKIIKDGEQHEDLNEVAKLF 639
>ref|XP_865808.1| PREDICTED: similar to programmed cell death 8 isoform 2 isoform 6
[Canis familiaris].
Length = 609
Score = 984 bits (2543), Expect(2) = 0.0
Identities = 503/587 (85%), Positives = 522/587 (88%), Gaps = 1/587 (0%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLP + Q H+ +R +AS+GAS
Sbjct: 1 MFRCGSLAAGAFKQKLAPLVRTVCVRGPRQRNRLP--VVQCDHLG---SPSRSLASTGAS 55
Query: 380 GGKIDNTVLVLFVGLSTIGAGAY-AYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPE 556
+ V L VG + GAG Y AY+TIKD++KRY+ER++GLGLTPEEKQKRATS APE
Sbjct: 56 VKDGSSLVYFLIVGATVTGAGVYYAYKTIKDDQKRYDERMSGLGLTPEEKQKRATSPAPE 115
Query: 557 GEPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKEL 736
GEPVPQVRVPSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKEL
Sbjct: 116 GEPVPQVRVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL 175
Query: 737 WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR 916
WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYV+AQDLPHIENGGVAVLTGKKVV LDVR
Sbjct: 176 WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVAAQDLPHIENGGVAVLTGKKVVHLDVR 235
Query: 917 GNMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE 1096
GNM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE
Sbjct: 236 GNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE 295
Query: 1097 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 1276
VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWT EKVRRE
Sbjct: 296 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTTEKVRRE 355
Query: 1277 GVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 1456
GVKVLPNAIVQSVGVSGG+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG
Sbjct: 356 GVKVLPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 415
Query: 1457 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 1636
GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ
Sbjct: 416 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 475
Query: 1637 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAP 1816
SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA
Sbjct: 476 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAS 535
Query: 1817 EITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
EI +P +PAVPQ P GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 536 EIAVPPSNPAVPQTPAQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 582
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 581 MPIARKIIKDGEQHEDLNEVAKLF 604
>ref|XP_865748.1| PREDICTED: similar to programmed cell death 8 isoform 3 isoform 2
[Canis familiaris].
Length = 326
Score = 506 bits (1303), Expect(2) = e-151
Identities = 250/264 (94%), Positives = 255/264 (96%)
Frame = +2
Query: 1166 ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIK 1345
ARALGTEVIQLFPEKGNMGKILPEYLSNWT EKVRREGVKVLPNAIVQSVGVSGG+LLIK
Sbjct: 36 ARALGTEVIQLFPEKGNMGKILPEYLSNWTTEKVRREGVKVLPNAIVQSVGVSGGRLLIK 95
Query: 1346 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 1525
LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF
Sbjct: 96 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 155
Query: 1526 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 1705
YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL
Sbjct: 156 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 215
Query: 1706 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTPGEDYGK 1885
PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA EI +P +PAVPQ P GEDYGK
Sbjct: 216 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEIAVPPSNPAVPQTPAQGEDYGK 275
Query: 1886 GVIFYLRDKVVVGIVLWNVFHRFP 1957
GVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 276 GVIFYLRDKVVVGIVLWNIFNRMP 299
Score = 48.5 bits (114), Expect(2) = e-151
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 298 MPIARKIIKDGEQHEDLNEVAKLF 321
>ref|XP_543566.2| PREDICTED: similar to apoptosis-inducing factor like isoform 1 [Canis
familiaris].
Length = 807
Score = 89.7 bits (221), Expect = 9e-18
Identities = 98/372 (26%), Positives = 152/372 (40%), Gaps = 9/372 (2%)
Frame = +2
Query: 569 PQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSD 748
P S L++G G R+++ + D LPY RP LSK L
Sbjct: 413 PSAGHSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL---- 468
Query: 749 DPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMA 928
+ + + +P F+ + G+ VLT +VV +DVR
Sbjct: 469 -------------DAQPEQLALRPKEFFRAY---------GIEVLTEAQVVTVDVRNKKV 506
Query: 929 KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSI 1108
DG ++ Y K L+A G +P++LS G EV++ T+ R D + +++R ++
Sbjct: 507 VFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANRVVRLARG-RNA 561
Query: 1109 TIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV 1288
++G GFLG E+A L KA ++ V++L E+ + L E + M+ VK
Sbjct: 562 VVVGAGFLGMEVAAYLTEKAHSV--SVVEL--EETPFRRFLGERVGRALMKMFENNRVKF 617
Query: 1289 LPNAIVQSVGVSGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 1465
V + GKL + LK + V D V +GL + GGL S G
Sbjct: 618 YMQTEVSELRAQEGKLKEVVLKSSKVVRADVCVVGIGL-----AVRHGGLR-GSGVGLGP 671
Query: 1466 VNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAK 1621
+Q ++ AGDA F R+V H A GR+A +NM +
Sbjct: 672 FGRMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTV 731
Query: 1622 PYWHQSMFWSDL 1657
PY +MF L
Sbjct: 732 PYLWTAMFGKSL 743
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 87,480,074
Number of extensions: 2480115
Number of successful extensions: 9395
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9354
Number of HSP's successfully gapped: 13
Length of query: 688
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 578
Effective length of database: 15,207,544
Effective search space: 8789960432
Effective search space used: 8789960432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012979
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012979
(2066 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179913.1| apoptosis-inducing factor 1, mitochondrial [... 1055 0.0
Alignment gi|XP_002699567.1| PREDICTED: apoptosis-inducing factor, mitoch... 1055 0.0
Alignment gi|XP_002699568.1| PREDICTED: apoptosis-inducing factor, mitoch... 979 0.0
Alignment gi|XP_002707180.1| PREDICTED: programmed cell death 8 [Bos taur... 979 0.0
Alignment gi|XP_002699569.1| PREDICTED: apoptosis-inducing factor, mitoch... 502 e-149
Alignment gi|XP_002707181.1| PREDICTED: programmed cell death 8 [Bos taur... 502 e-149
Alignment gi|NP_001039746.2| apoptosis-inducing factor 3 [Bos taurus]. 100 6e-21
Alignment gi|XP_002694724.1| PREDICTED: apoptosis-inducing factor, mitoch... 100 6e-21
Alignment gi|XP_002694723.1| PREDICTED: apoptosis-inducing factor, mitoch... 100 6e-21
Alignment gi|XP_002694722.1| PREDICTED: apoptosis-inducing factor, mitoch... 100 6e-21
>ref|NP_001179913.1| apoptosis-inducing factor 1, mitochondrial [Bos taurus].
Length = 613
Score = 1055 bits (2727), Expect(2) = 0.0
Identities = 528/586 (90%), Positives = 544/586 (92%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSG S
Sbjct: 1 MFRCGGLAAGALKQKLAPLVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGPS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLSTIGAGAYAY+TIKD+KKRYNERI+GLGLTPEEKQKRATSSA EG
Sbjct: 61 GGKIDNSVLVLIVGLSTIGAGAYAYKTIKDDKKRYNERISGLGLTPEEKQKRATSSALEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
EP PQVR+PSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EPEPQVRIPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRF+QWNGKERSIYFQPPSFYVSAQDLP +ENGGVAVLTGKKVVQLDVRG
Sbjct: 181 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPRVENGGVAVLTGKKVVQLDVRG 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
N+AKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI DFRTLEKISREV
Sbjct: 241 NVAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIEDFRTLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 1279
KSITIIGGGFLGSELACALGRKARA GTEVIQLFPEKGNMGK+LPEYLSNWTMEKVRREG
Sbjct: 301 KSITIIGGGFLGSELACALGRKARASGTEVIQLFPEKGNMGKVLPEYLSNWTMEKVRREG 360
Query: 1280 VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 1459
VKVLP+AIVQSVGVS G+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
Sbjct: 361 VKVLPSAIVQSVGVSAGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 420
Query: 1460 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 1639
FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
Sbjct: 421 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 480
Query: 1640 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE 1819
MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA +
Sbjct: 481 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASD 540
Query: 1820 ITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
I +P +PAVPQ PT GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 541 IPVPPSNPAVPQVPTQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 586
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 585 MPIARKIIKDGEQHEDLNEVAKLF 608
>ref|XP_002699567.1| PREDICTED: apoptosis-inducing factor, mitochondrion-associated, 1
isoform 1 [Bos taurus].
Length = 613
Score = 1055 bits (2727), Expect(2) = 0.0
Identities = 528/586 (90%), Positives = 544/586 (92%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSG S
Sbjct: 1 MFRCGGLAAGALKQKLAPLVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGPS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLSTIGAGAYAY+TIKD+KKRYNERI+GLGLTPEEKQKRATSSA EG
Sbjct: 61 GGKIDNSVLVLIVGLSTIGAGAYAYKTIKDDKKRYNERISGLGLTPEEKQKRATSSALEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
EP PQVR+PSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EPEPQVRIPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRF+QWNGKERSIYFQPPSFYVSAQDLP +ENGGVAVLTGKKVVQLDVRG
Sbjct: 181 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPRVENGGVAVLTGKKVVQLDVRG 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
N+AKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI DFRTLEKISREV
Sbjct: 241 NVAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIEDFRTLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 1279
KSITIIGGGFLGSELACALGRKARA GTEVIQLFPEKGNMGK+LPEYLSNWTMEKVRREG
Sbjct: 301 KSITIIGGGFLGSELACALGRKARASGTEVIQLFPEKGNMGKVLPEYLSNWTMEKVRREG 360
Query: 1280 VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 1459
VKVLP+AIVQSVGVS G+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
Sbjct: 361 VKVLPSAIVQSVGVSAGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 420
Query: 1460 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 1639
FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
Sbjct: 421 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 480
Query: 1640 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE 1819
MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA +
Sbjct: 481 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASD 540
Query: 1820 ITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
I +P +PAVPQ PT GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 541 IPVPPSNPAVPQVPTQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 586
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 585 MPIARKIIKDGEQHEDLNEVAKLF 608
>ref|XP_002699568.1| PREDICTED: apoptosis-inducing factor, mitochondrion-associated, 1
isoform 2 [Bos taurus].
Length = 609
Score = 979 bits (2530), Expect(2) = 0.0
Identities = 500/587 (85%), Positives = 522/587 (88%), Gaps = 1/587 (0%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLP + Q H+ +R +AS+GAS
Sbjct: 1 MFRCGGLAAGALKQKLAPLVRTVCVRGPRQRNRLP--VVQCHHLG---PPSRSLASTGAS 55
Query: 380 GGKIDNTVLVLFVGLSTIGAGAY-AYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPE 556
G + V L VG + GAG Y AY+TIKD+KKRYNERI+GLGLTPEEKQKRATSSA E
Sbjct: 56 GKDGSSLVYFLIVGATVTGAGVYYAYKTIKDDKKRYNERISGLGLTPEEKQKRATSSALE 115
Query: 557 GEPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKEL 736
GEP PQVR+PSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKEL
Sbjct: 116 GEPEPQVRIPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL 175
Query: 737 WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR 916
WFSDDPNVTKTLRF+QWNGKERSIYFQPPSFYVSAQDLP +ENGGVAVLTGKKVVQLDVR
Sbjct: 176 WFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPRVENGGVAVLTGKKVVQLDVR 235
Query: 917 GNMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE 1096
GN+AKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI DFRTLEKISRE
Sbjct: 236 GNVAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIEDFRTLEKISRE 295
Query: 1097 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 1276
VKSITIIGGGFLGSELACALGRKARA GTEVIQLFPEKGNMGK+LPEYLSNWTMEKVRRE
Sbjct: 296 VKSITIIGGGFLGSELACALGRKARASGTEVIQLFPEKGNMGKVLPEYLSNWTMEKVRRE 355
Query: 1277 GVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 1456
GVKVLP+AIVQSVGVS G+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG
Sbjct: 356 GVKVLPSAIVQSVGVSAGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 415
Query: 1457 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 1636
GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ
Sbjct: 416 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 475
Query: 1637 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAP 1816
SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA
Sbjct: 476 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAS 535
Query: 1817 EITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
+I +P +PAVPQ PT GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 536 DIPVPPSNPAVPQVPTQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 582
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 581 MPIARKIIKDGEQHEDLNEVAKLF 604
>ref|XP_002707180.1| PREDICTED: programmed cell death 8 [Bos taurus].
Length = 609
Score = 979 bits (2530), Expect(2) = 0.0
Identities = 500/587 (85%), Positives = 522/587 (88%), Gaps = 1/587 (0%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLP + Q H+ +R +AS+GAS
Sbjct: 1 MFRCGGLAAGALKQKLAPLVRTVCVRGPRQRNRLP--VVQCHHLG---PPSRSLASTGAS 55
Query: 380 GGKIDNTVLVLFVGLSTIGAGAY-AYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPE 556
G + V L VG + GAG Y AY+TIKD+KKRYNERI+GLGLTPEEKQKRATSSA E
Sbjct: 56 GKDGSSLVYFLIVGATVTGAGVYYAYKTIKDDKKRYNERISGLGLTPEEKQKRATSSALE 115
Query: 557 GEPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKEL 736
GEP PQVR+PSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKEL
Sbjct: 116 GEPEPQVRIPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL 175
Query: 737 WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR 916
WFSDDPNVTKTLRF+QWNGKERSIYFQPPSFYVSAQDLP +ENGGVAVLTGKKVVQLDVR
Sbjct: 176 WFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPRVENGGVAVLTGKKVVQLDVR 235
Query: 917 GNMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE 1096
GN+AKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI DFRTLEKISRE
Sbjct: 236 GNVAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIEDFRTLEKISRE 295
Query: 1097 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 1276
VKSITIIGGGFLGSELACALGRKARA GTEVIQLFPEKGNMGK+LPEYLSNWTMEKVRRE
Sbjct: 296 VKSITIIGGGFLGSELACALGRKARASGTEVIQLFPEKGNMGKVLPEYLSNWTMEKVRRE 355
Query: 1277 GVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 1456
GVKVLP+AIVQSVGVS G+LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG
Sbjct: 356 GVKVLPSAIVQSVGVSAGRLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 415
Query: 1457 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 1636
GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ
Sbjct: 416 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 475
Query: 1637 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAP 1816
SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA
Sbjct: 476 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAS 535
Query: 1817 EITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
+I +P +PAVPQ PT GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 536 DIPVPPSNPAVPQVPTQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 582
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 581 MPIARKIIKDGEQHEDLNEVAKLF 604
>ref|XP_002699569.1| PREDICTED: apoptosis-inducing factor, mitochondrion-associated, 1
isoform 3 [Bos taurus].
Length = 326
Score = 502 bits (1292), Expect(2) = e-149
Identities = 247/264 (93%), Positives = 255/264 (96%)
Frame = +2
Query: 1166 ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIK 1345
ARA GTEVIQLFPEKGNMGK+LPEYLSNWTMEKVRREGVKVLP+AIVQSVGVS G+LLIK
Sbjct: 36 ARASGTEVIQLFPEKGNMGKVLPEYLSNWTMEKVRREGVKVLPSAIVQSVGVSAGRLLIK 95
Query: 1346 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 1525
LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF
Sbjct: 96 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 155
Query: 1526 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 1705
YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL
Sbjct: 156 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 215
Query: 1706 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTPGEDYGK 1885
PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA +I +P +PAVPQ PT GEDYGK
Sbjct: 216 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASDIPVPPSNPAVPQVPTQGEDYGK 275
Query: 1886 GVIFYLRDKVVVGIVLWNVFHRFP 1957
GVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 276 GVIFYLRDKVVVGIVLWNIFNRMP 299
Score = 48.5 bits (114), Expect(2) = e-149
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 298 MPIARKIIKDGEQHEDLNEVAKLF 321
>ref|XP_002707181.1| PREDICTED: programmed cell death 8 [Bos taurus].
Length = 326
Score = 502 bits (1292), Expect(2) = e-149
Identities = 247/264 (93%), Positives = 255/264 (96%)
Frame = +2
Query: 1166 ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIK 1345
ARA GTEVIQLFPEKGNMGK+LPEYLSNWTMEKVRREGVKVLP+AIVQSVGVS G+LLIK
Sbjct: 36 ARASGTEVIQLFPEKGNMGKVLPEYLSNWTMEKVRREGVKVLPSAIVQSVGVSAGRLLIK 95
Query: 1346 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 1525
LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF
Sbjct: 96 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 155
Query: 1526 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 1705
YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL
Sbjct: 156 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 215
Query: 1706 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTPGEDYGK 1885
PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA +I +P +PAVPQ PT GEDYGK
Sbjct: 216 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASDIPVPPSNPAVPQVPTQGEDYGK 275
Query: 1886 GVIFYLRDKVVVGIVLWNVFHRFP 1957
GVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 276 GVIFYLRDKVVVGIVLWNIFNRMP 299
Score = 48.5 bits (114), Expect(2) = e-149
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 298 MPIARKIIKDGEQHEDLNEVAKLF 321
>ref|NP_001039746.2| apoptosis-inducing factor 3 [Bos taurus].
Length = 598
Score = 100 bits (248), Expect = 6e-21
Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 9/361 (2%)
Frame = +2
Query: 602 LLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFR 781
L++G G R+++ + D LPY RP LSK L
Sbjct: 198 LIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL--------------- 242
Query: 782 QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMAKLNDGSQITYE 961
+ + + +P F+ + G+ VLT +VV +DVR A DG ++ Y
Sbjct: 243 --DAQPEQLALRPKEFFRAH---------GIEVLTEAQVVTVDVRNKKAVFKDGFKLEYS 291
Query: 962 KCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSITIIGGGFLGSE 1141
K L+A G +P++LS G +V++ T+ R D + +++R ++ ++G GFLG E
Sbjct: 292 KLLLAPGSSPKTLSC---KGKDVENVFTI-RTPEDANRVVRLARG-RNAVVVGAGFLGME 346
Query: 1142 LACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGV 1321
+A L KA ++ ++ P + + L E + + M+ VK V +
Sbjct: 347 VAAYLTEKAHSVSVVEVEETPFR----RFLGERVGHTLMKMFENNRVKFYMQTEVSELRA 402
Query: 1322 SGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SN 1495
GKL + LK + V D V +G P + G+ +DS G VN +Q
Sbjct: 403 QEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGISLDSR-GFIPVNKMMQTNIPG 461
Query: 1496 IWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAKPYWHQSMFWSD 1654
++ AGDA F R+V H A GR+A +NM + P+ +MF
Sbjct: 462 VFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPFLWTAMFGKS 521
Query: 1655 L 1657
L
Sbjct: 522 L 522
>ref|XP_002694724.1| PREDICTED: apoptosis-inducing factor, mitochondrion-associated, 3
isoform 3 [Bos taurus].
Length = 607
Score = 100 bits (248), Expect = 6e-21
Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 9/361 (2%)
Frame = +2
Query: 602 LLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFR 781
L++G G R+++ + D LPY RP LSK L
Sbjct: 207 LIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL--------------- 251
Query: 782 QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMAKLNDGSQITYE 961
+ + + +P F+ + G+ VLT +VV +DVR A DG ++ Y
Sbjct: 252 --DAQPEQLALRPKEFFRAH---------GIEVLTEAQVVTVDVRNKKAVFKDGFKLEYS 300
Query: 962 KCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSITIIGGGFLGSE 1141
K L+A G +P++LS G +V++ T+ R D + +++R ++ ++G GFLG E
Sbjct: 301 KLLLAPGSSPKTLSC---KGKDVENVFTI-RTPEDANRVVRLARG-RNAVVVGAGFLGME 355
Query: 1142 LACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGV 1321
+A L KA ++ ++ P + + L E + + M+ VK V +
Sbjct: 356 VAAYLTEKAHSVSVVEVEETPFR----RFLGERVGHTLMKMFENNRVKFYMQTEVSELRA 411
Query: 1322 SGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SN 1495
GKL + LK + V D V +G P + G+ +DS G VN +Q
Sbjct: 412 QEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGISLDSR-GFIPVNKMMQTNIPG 470
Query: 1496 IWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAKPYWHQSMFWSD 1654
++ AGDA F R+V H A GR+A +NM + P+ +MF
Sbjct: 471 VFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPFLWTAMFGKS 530
Query: 1655 L 1657
L
Sbjct: 531 L 531
>ref|XP_002694723.1| PREDICTED: apoptosis-inducing factor, mitochondrion-associated, 3
isoform 2 [Bos taurus].
Length = 598
Score = 100 bits (248), Expect = 6e-21
Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 9/361 (2%)
Frame = +2
Query: 602 LLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFR 781
L++G G R+++ + D LPY RP LSK L
Sbjct: 198 LIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL--------------- 242
Query: 782 QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMAKLNDGSQITYE 961
+ + + +P F+ + G+ VLT +VV +DVR A DG ++ Y
Sbjct: 243 --DAQPEQLALRPKEFFRAH---------GIEVLTEAQVVTVDVRNKKAVFKDGFKLEYS 291
Query: 962 KCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSITIIGGGFLGSE 1141
K L+A G +P++LS G +V++ T+ R D + +++R ++ ++G GFLG E
Sbjct: 292 KLLLAPGSSPKTLSC---KGKDVENVFTI-RTPEDANRVVRLARG-RNAVVVGAGFLGME 346
Query: 1142 LACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGV 1321
+A L KA ++ ++ P + + L E + + M+ VK V +
Sbjct: 347 VAAYLTEKAHSVSVVEVEETPFR----RFLGERVGHTLMKMFENNRVKFYMQTEVSELRA 402
Query: 1322 SGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SN 1495
GKL + LK + V D V +G P + G+ +DS G VN +Q
Sbjct: 403 QEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGISLDSR-GFIPVNKMMQTNIPG 461
Query: 1496 IWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAKPYWHQSMFWSD 1654
++ AGDA F R+V H A GR+A +NM + P+ +MF
Sbjct: 462 VFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPFLWTAMFGKS 521
Query: 1655 L 1657
L
Sbjct: 522 L 522
>ref|XP_002694722.1| PREDICTED: apoptosis-inducing factor, mitochondrion-associated, 3
isoform 1 [Bos taurus].
Length = 605
Score = 100 bits (248), Expect = 6e-21
Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 9/361 (2%)
Frame = +2
Query: 602 LLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFR 781
L++G G R+++ + D LPY RP LSK L
Sbjct: 198 LIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL--------------- 242
Query: 782 QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMAKLNDGSQITYE 961
+ + + +P F+ + G+ VLT +VV +DVR A DG ++ Y
Sbjct: 243 --DAQPEQLALRPKEFFRAH---------GIEVLTEAQVVTVDVRNKKAVFKDGFKLEYS 291
Query: 962 KCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSITIIGGGFLGSE 1141
K L+A G +P++LS G +V++ T+ R D + +++R ++ ++G GFLG E
Sbjct: 292 KLLLAPGSSPKTLSC---KGKDVENVFTI-RTPEDANRVVRLARG-RNAVVVGAGFLGME 346
Query: 1142 LACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGV 1321
+A L KA ++ ++ P + + L E + + M+ VK V +
Sbjct: 347 VAAYLTEKAHSVSVVEVEETPFR----RFLGERVGHTLMKMFENNRVKFYMQTEVSELRA 402
Query: 1322 SGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SN 1495
GKL + LK + V D V +G P + G+ +DS G VN +Q
Sbjct: 403 QEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGISLDSR-GFIPVNKMMQTNIPG 461
Query: 1496 IWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAKPYWHQSMFWSD 1654
++ AGDA F R+V H A GR+A +NM + P+ +MF
Sbjct: 462 VFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPFLWTAMFGKS 521
Query: 1655 L 1657
L
Sbjct: 522 L 522
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 83,952,142
Number of extensions: 2412168
Number of successful extensions: 9051
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 8999
Number of HSP's successfully gapped: 19
Length of query: 688
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 579
Effective length of database: 14,074,782
Effective search space: 8149298778
Effective search space used: 8149298778
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012979
(2066 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135418.1| PREDICTED: apoptosis-inducing factor 1, mito... 1104 0.0
Alignment gi|XP_003135419.1| PREDICTED: apoptosis-inducing factor 1, mito... 1023 0.0
Alignment gi|XP_003360488.1| PREDICTED: apoptosis-inducing factor 1, mito... 525 e-157
Alignment gi|XP_003133044.1| PREDICTED: apoptosis-inducing factor 3 isofo... 100 3e-21
Alignment gi|XP_003133043.1| PREDICTED: apoptosis-inducing factor 3 isofo... 100 3e-21
>ref|XP_003135418.1| PREDICTED: apoptosis-inducing factor 1, mitochondrial isoform 1 [Sus
scrofa].
Length = 613
Score = 1104 bits (2855), Expect = 0.0
Identities = 556/586 (94%), Positives = 557/586 (95%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
Sbjct: 1 MFRCGGLAAGALKQKLAPLVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG
Sbjct: 61 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
EPVPQVRVPSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EPVPQVRVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG
Sbjct: 181 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV
Sbjct: 241 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 1279
KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG
Sbjct: 301 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 360
Query: 1280 VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 1459
VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
Sbjct: 361 VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 420
Query: 1460 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 1639
FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
Sbjct: 421 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 480
Query: 1640 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE 1819
MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE
Sbjct: 481 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE 540
Query: 1820 ITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
ITLPVGSPAVPQAPT GEDYGKGVIFYLRDKVVVGIVLWNVF+R P
Sbjct: 541 ITLPVGSPAVPQAPTQGEDYGKGVIFYLRDKVVVGIVLWNVFNRMP 586
>ref|XP_003135419.1| PREDICTED: apoptosis-inducing factor 1, mitochondrial isoform 2 [Sus
scrofa].
Length = 609
Score = 1023 bits (2644), Expect(2) = 0.0
Identities = 525/587 (89%), Positives = 533/587 (90%), Gaps = 1/587 (0%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVRGPRQRNRLP + Q H+ +R +AS+GAS
Sbjct: 1 MFRCGGLAAGALKQKLAPLVRTVCVRGPRQRNRLP--VVQCHHLG---SPSRSLASTGAS 55
Query: 380 GGKIDNTVLVLFVGLSTIGAGAY-AYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPE 556
G + V L VG + GAG Y AYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPE
Sbjct: 56 GKDGSSLVYFLIVGATVTGAGVYYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPE 115
Query: 557 GEPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKEL 736
GEPVPQVRVPSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKEL
Sbjct: 116 GEPVPQVRVPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL 175
Query: 737 WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR 916
WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR
Sbjct: 176 WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR 235
Query: 917 GNMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE 1096
GNMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE
Sbjct: 236 GNMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE 295
Query: 1097 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 1276
VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE
Sbjct: 296 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 355
Query: 1277 GVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 1456
GVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG
Sbjct: 356 GVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 415
Query: 1457 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 1636
GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ
Sbjct: 416 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 475
Query: 1637 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAP 1816
SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAP
Sbjct: 476 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAP 535
Query: 1817 EITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
EITLPVGSPAVPQAPT GEDYGKGVIFYLRDKVVVGIVLWNVF+R P
Sbjct: 536 EITLPVGSPAVPQAPTQGEDYGKGVIFYLRDKVVVGIVLWNVFNRMP 582
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 581 MPIARKIIKDGEQHEDLNEVAKLF 604
>ref|XP_003360488.1| PREDICTED: apoptosis-inducing factor 1, mitochondrial [Sus scrofa].
Length = 326
Score = 525 bits (1353), Expect(2) = e-157
Identities = 261/264 (98%), Positives = 262/264 (99%)
Frame = +2
Query: 1166 ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIK 1345
ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIK
Sbjct: 36 ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIK 95
Query: 1346 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 1525
LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF
Sbjct: 96 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 155
Query: 1526 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 1705
YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL
Sbjct: 156 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 215
Query: 1706 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTPGEDYGK 1885
PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPT GEDYGK
Sbjct: 216 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTQGEDYGK 275
Query: 1886 GVIFYLRDKVVVGIVLWNVFHRFP 1957
GVIFYLRDKVVVGIVLWNVF+R P
Sbjct: 276 GVIFYLRDKVVVGIVLWNVFNRMP 299
Score = 48.5 bits (114), Expect(2) = e-157
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 298 MPIARKIIKDGEQHEDLNEVAKLF 321
>ref|XP_003133044.1| PREDICTED: apoptosis-inducing factor 3 isoform 2 [Sus scrofa].
Length = 597
Score = 100 bits (249), Expect = 3e-21
Identities = 98/361 (27%), Positives = 155/361 (42%), Gaps = 9/361 (2%)
Frame = +2
Query: 602 LLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFR 781
L++G G R+++ + D LPY RP LSK L
Sbjct: 197 LIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL--------------- 241
Query: 782 QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMAKLNDGSQITYE 961
+ + + +P F+ + G+ VLT +VV +DVR A DG ++ Y
Sbjct: 242 --DTQPEQLALRPKEFFRAH---------GIEVLTEAQVVTVDVRNKKAVFKDGFKLEYS 290
Query: 962 KCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSITIIGGGFLGSE 1141
K L+A G +P++LS G EV++ T+ R D + +++R ++ ++G GFLG E
Sbjct: 291 KLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANRVVRLARG-RNAVVVGAGFLGME 345
Query: 1142 LACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGV 1321
+A L KA ++ V++L E+ ++L E + M+ VK V +
Sbjct: 346 VAAYLTEKAHSV--SVVEL--EETPFRRLLGERVGRALMKMFENNRVKFYMQTEVLELRA 401
Query: 1322 SGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SN 1495
GKL + LK + V D V +G P + G+ +DS G VN +Q
Sbjct: 402 QEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSR-GFIPVNKMMQTNVPG 460
Query: 1496 IWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAKPYWHQSMFWSD 1654
++ AGDA F R+V H A GR+A +NM + PY +MF
Sbjct: 461 VFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPYLWTAMFGKS 520
Query: 1655 L 1657
L
Sbjct: 521 L 521
>ref|XP_003133043.1| PREDICTED: apoptosis-inducing factor 3 isoform 1 [Sus scrofa].
Length = 604
Score = 100 bits (249), Expect = 3e-21
Identities = 98/361 (27%), Positives = 155/361 (42%), Gaps = 9/361 (2%)
Frame = +2
Query: 602 LLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFR 781
L++G G R+++ + D LPY RP LSK L
Sbjct: 197 LIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL--------------- 241
Query: 782 QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMAKLNDGSQITYE 961
+ + + +P F+ + G+ VLT +VV +DVR A DG ++ Y
Sbjct: 242 --DTQPEQLALRPKEFFRAH---------GIEVLTEAQVVTVDVRNKKAVFKDGFKLEYS 290
Query: 962 KCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSITIIGGGFLGSE 1141
K L+A G +P++LS G EV++ T+ R D + +++R ++ ++G GFLG E
Sbjct: 291 KLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANRVVRLARG-RNAVVVGAGFLGME 345
Query: 1142 LACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGV 1321
+A L KA ++ V++L E+ ++L E + M+ VK V +
Sbjct: 346 VAAYLTEKAHSV--SVVEL--EETPFRRLLGERVGRALMKMFENNRVKFYMQTEVLELRA 401
Query: 1322 SGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SN 1495
GKL + LK + V D V +G P + G+ +DS G VN +Q
Sbjct: 402 QEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSR-GFIPVNKMMQTNVPG 460
Query: 1496 IWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAKPYWHQSMFWSD 1654
++ AGDA F R+V H A GR+A +NM + PY +MF
Sbjct: 461 VFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEISTVPYLWTAMFGKS 520
Query: 1655 L 1657
L
Sbjct: 521 L 521
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,134,211
Number of extensions: 1553184
Number of successful extensions: 5941
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5901
Number of HSP's successfully gapped: 7
Length of query: 688
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 582
Effective length of database: 8,704,850
Effective search space: 5066222700
Effective search space used: 5066222700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012979
(2066 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036149.1| apoptosis-inducing factor 1, mitochondrial prec... 1014 0.0
Alignment gi|NP_780387.2| apoptosis-inducing factor 3 [Mus musculus]. 91 3e-18
>ref|NP_036149.1| apoptosis-inducing factor 1, mitochondrial precursor [Mus musculus].
Length = 612
Score = 1014 bits (2622), Expect(2) = 0.0
Identities = 503/567 (88%), Positives = 531/567 (93%)
Frame = +2
Query: 257 VRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGASGGKIDNTVLVLFVGLSTIG 436
VRTV V+ P+QRNRLPGNLFQ+W VPLELQM RQMASSG+SGGK+DN+VLVL VGLSTIG
Sbjct: 19 VRTVYVQRPKQRNRLPGNLFQQWRVPLELQMARQMASSGSSGGKMDNSVLVLIVGLSTIG 78
Query: 437 AGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEGEPVPQVRVPSHVPFLLIGG 616
AGAYAY+TIK+++KRYNER+ GLGL+PEEKQ+RA +SA EG VPQ+R PSHVPFLLIGG
Sbjct: 79 AGAYAYKTIKEDQKRYNERVMGLGLSPEEKQRRAIASATEGGSVPQIRAPSHVPFLLIGG 138
Query: 617 GTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFRQWNGK 796
GT DPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTL+FRQWNGK
Sbjct: 139 GTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGK 198
Query: 797 ERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMAKLNDGSQITYEKCLIA 976
ERSIYFQPPSFYVSAQDLP+IENGGVAVLTGKKVV LDVRGNM KLNDGSQIT+EKCLIA
Sbjct: 199 ERSIYFQPPSFYVSAQDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIA 258
Query: 977 TGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSITIIGGGFLGSELACAL 1156
TGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFR LEKISREVKSIT+IGGGFLGSELACAL
Sbjct: 259 TGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACAL 318
Query: 1157 GRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKL 1336
GRK++A G EVIQLFPEKGNMGKILP+YLSNWTMEKV+REGVKV+PNAIVQSVGVSGG+L
Sbjct: 319 GRKSQASGIEVIQLFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGVSGGRL 378
Query: 1337 LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDA 1516
LIKLKDGRKVETDHIV AVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDA
Sbjct: 379 LIKLKDGRKVETDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDA 438
Query: 1517 ACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVD 1696
ACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVD
Sbjct: 439 ACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVD 498
Query: 1697 SSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTPGED 1876
SSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA EIT+P +PAVPQ P GED
Sbjct: 499 SSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSAPAVPQVPVEGED 558
Query: 1877 YGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
YGKGVIFYLRDKVVVGIVLWNVF+R P
Sbjct: 559 YGKGVIFYLRDKVVVGIVLWNVFNRMP 585
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 584 MPIARKIIKDGEQHEDLNEVAKLF 607
>ref|NP_780387.2| apoptosis-inducing factor 3 [Mus musculus].
Length = 598
Score = 90.9 bits (224), Expect = 3e-18
Identities = 94/372 (25%), Positives = 153/372 (41%), Gaps = 9/372 (2%)
Frame = +2
Query: 569 PQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSD 748
P S L++G G R+++ + D LPY R LSK L
Sbjct: 187 PSAGHSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRAKLSKSL---- 242
Query: 749 DPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMA 928
+ + + +P F+ + G+ +LT +VV +DVR
Sbjct: 243 -------------DAQPEQLALRPKEFFRAY---------GIEMLTEAQVVTVDVRNKKV 280
Query: 929 KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSI 1108
DG ++ Y K L+A G +P++L+ G +V++ T+ R D + +++R ++
Sbjct: 281 VFKDGFKLEYSKLLLAPGSSPKTLTC---KGKDVENVFTI-RTPEDANRVLRLARG-RNA 335
Query: 1109 TIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV 1288
++G GFLG E+A L KA ++ V++L E+ + L E + M+ VK
Sbjct: 336 VVVGAGFLGMEVAAYLTEKAHSV--SVVEL--EETPFRRFLGERVGRALMKMFENNRVKF 391
Query: 1289 LPNAIVQSVGVSGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 1465
V + GKL + LK + + D V +G P + G+ +DS G
Sbjct: 392 YMQTEVSELRAQEGKLQEVVLKSSKVLRADVCVLGIGAVPATGFLRQSGIGLDSR-GFIP 450
Query: 1466 VNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTGA-----AK 1621
VN +Q ++ AGDA F R+V H A GR+A +NM
Sbjct: 451 VNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEINTV 510
Query: 1622 PYWHQSMFWSDL 1657
PY +MF L
Sbjct: 511 PYLWTAMFGKSL 522
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 72,751,561
Number of extensions: 2047498
Number of successful extensions: 7293
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7261
Number of HSP's successfully gapped: 3
Length of query: 688
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 580
Effective length of database: 12,373,671
Effective search space: 7176729180
Effective search space used: 7176729180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012979
(2066 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004199.1| apoptosis-inducing factor 1, mitochondrial isof... 1049 0.0
Alignment gi|NP_665811.1| apoptosis-inducing factor 1, mitochondrial isof... 974 0.0
Alignment gi|NP_001124319.1| apoptosis-inducing factor 1, mitochondrial i... 543 e-154
Alignment gi|NP_665812.1| apoptosis-inducing factor 1, mitochondrial isof... 510 e-152
Alignment gi|NP_001124318.1| apoptosis-inducing factor 1, mitochondrial i... 449 e-134
Alignment gi|NP_001139760.1| apoptosis-inducing factor 3 isoform 3 [Homo ... 100 9e-21
Alignment gi|NP_001018070.1| apoptosis-inducing factor 3 isoform 2 [Homo ... 100 9e-21
Alignment gi|NP_653305.1| apoptosis-inducing factor 3 isoform 1 [Homo sap... 100 9e-21
>ref|NP_004199.1| apoptosis-inducing factor 1, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 613
Score = 1049 bits (2712), Expect(2) = 0.0
Identities = 524/586 (89%), Positives = 542/586 (92%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVR PRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
Sbjct: 1 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLST+GAGAYAY+T+K+++KRYNERI+GLGLTPE+KQK+A SA EG
Sbjct: 61 GGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
E VPQ + PSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRF+QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR
Sbjct: 181 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
NM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFR+LEKISREV
Sbjct: 241 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 1279
KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG
Sbjct: 301 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG 360
Query: 1280 VKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 1459
VKV+PNAIVQSVGVS GKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
Sbjct: 361 VKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG 420
Query: 1460 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 1639
FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
Sbjct: 421 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS 480
Query: 1640 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPE 1819
MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA E
Sbjct: 481 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASE 540
Query: 1820 ITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
IT+P +PAVPQAP GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 541 ITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 586
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 585 MPIARKIIKDGEQHEDLNEVAKLF 608
>ref|NP_665811.1| apoptosis-inducing factor 1, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 609
Score = 974 bits (2519), Expect(2) = 0.0
Identities = 497/587 (84%), Positives = 519/587 (88%), Gaps = 1/587 (0%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVR PRQRNRLP + Q H+ +R +AS+GAS
Sbjct: 1 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLP--VVQSHHLG---SPSRSLASTGAS 55
Query: 380 GGKIDNTVLVLFVGLSTIGAGAY-AYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPE 556
G N V L VG + GAG Y AY+T+K+++KRYNERI+GLGLTPE+KQK+A SA E
Sbjct: 56 GKDGSNLVYFLIVGATVTGAGVYYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASE 115
Query: 557 GEPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKEL 736
GE VPQ + PSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKEL
Sbjct: 116 GEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL 175
Query: 737 WFSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR 916
WFSDDPNVTKTLRF+QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR
Sbjct: 176 WFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR 235
Query: 917 GNMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISRE 1096
NM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFR+LEKISRE
Sbjct: 236 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE 295
Query: 1097 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 1276
VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE
Sbjct: 296 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 355
Query: 1277 GVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 1456
GVKV+PNAIVQSVGVS GKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG
Sbjct: 356 GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG 415
Query: 1457 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 1636
GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ
Sbjct: 416 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ 475
Query: 1637 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAP 1816
SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA
Sbjct: 476 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAS 535
Query: 1817 EITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
EIT+P +PAVPQAP GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 536 EITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 582
Score = 48.5 bits (114), Expect(2) = 0.0
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 581 MPIARKIIKDGEQHEDLNEVAKLF 604
>ref|NP_001124319.1| apoptosis-inducing factor 1, mitochondrial isoform 5 precursor [Homo
sapiens].
Length = 324
Score = 543 bits (1398), Expect = e-154
Identities = 272/322 (84%), Positives = 285/322 (88%)
Frame = +2
Query: 200 MFRCXXXXXXXXXXXXXXXVRTVCVRGPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 379
MFRC VRTVCVR PRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
Sbjct: 1 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS 60
Query: 380 GGKIDNTVLVLFVGLSTIGAGAYAYRTIKDNKKRYNERIAGLGLTPEEKQKRATSSAPEG 559
GGKIDN+VLVL VGLST+GAGAYAY+T+K+++KRYNERI+GLGLTPE+KQK+A SA EG
Sbjct: 61 GGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASEG 120
Query: 560 EPVPQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELW 739
E VPQ + PSHVPFLLIGGGT DPGARVLIVSEDPELPYMRPPLSKELW
Sbjct: 121 EEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW 180
Query: 740 FSDDPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRG 919
FSDDPNVTKTLRF+QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR
Sbjct: 181 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD 240
Query: 920 NMAKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREV 1099
NM KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFR+LEKISREV
Sbjct: 241 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREV 300
Query: 1100 KSITIIGGGFLGSELACALGRK 1165
KSITIIGGGFLGSELACALGRK
Sbjct: 301 KSITIIGGGFLGSELACALGRK 322
>ref|NP_665812.1| apoptosis-inducing factor 1, mitochondrial isoform 3 [Homo sapiens].
Length = 326
Score = 510 bits (1314), Expect(2) = e-152
Identities = 252/264 (95%), Positives = 257/264 (97%)
Frame = +2
Query: 1166 ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVLPNAIVQSVGVSGGKLLIK 1345
ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV+PNAIVQSVGVS GKLLIK
Sbjct: 36 ARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIK 95
Query: 1346 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 1525
LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF
Sbjct: 96 LKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACF 155
Query: 1526 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 1705
YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL
Sbjct: 156 YDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSL 215
Query: 1706 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAPEITLPVGSPAVPQAPTPGEDYGK 1885
PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEA EIT+P +PAVPQAP GEDYGK
Sbjct: 216 PTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGK 275
Query: 1886 GVIFYLRDKVVVGIVLWNVFHRFP 1957
GVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 276 GVIFYLRDKVVVGIVLWNIFNRMP 299
Score = 48.5 bits (114), Expect(2) = e-152
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 298 MPIARKIIKDGEQHEDLNEVAKLF 321
>ref|NP_001124318.1| apoptosis-inducing factor 1, mitochondrial isoform 4 [Homo sapiens].
Length = 261
Score = 449 bits (1156), Expect(2) = e-134
Identities = 222/234 (94%), Positives = 227/234 (97%)
Frame = +2
Query: 1256 MEKVRREGVKVLPNAIVQSVGVSGGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL 1435
MEKVRREGVKV+PNAIVQSVGVS GKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL
Sbjct: 1 MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL 60
Query: 1436 EIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGA 1615
EIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGA
Sbjct: 61 EIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGA 120
Query: 1616 AKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSES 1795
AKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSES
Sbjct: 121 AKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSES 180
Query: 1796 ETESEAPEITLPVGSPAVPQAPTPGEDYGKGVIFYLRDKVVVGIVLWNVFHRFP 1957
ETESEA EIT+P +PAVPQAP GEDYGKGVIFYLRDKVVVGIVLWN+F+R P
Sbjct: 181 ETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMP 234
Score = 48.5 bits (114), Expect(2) = e-134
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 1951 IPIARKIIKDGEQHEDLNEVAQLF 2022
+PIARKIIKDGEQHEDLNEVA+LF
Sbjct: 233 MPIARKIIKDGEQHEDLNEVAKLF 256
>ref|NP_001139760.1| apoptosis-inducing factor 3 isoform 3 [Homo sapiens].
Length = 604
Score = 99.8 bits (247), Expect = 9e-21
Identities = 99/372 (26%), Positives = 156/372 (41%), Gaps = 9/372 (2%)
Frame = +2
Query: 569 PQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSD 748
P S L++G G R+++ + D LPY RP LSK L
Sbjct: 193 PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL---- 248
Query: 749 DPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMA 928
+ + + +P F+ + G+ VLT +VV +DVR
Sbjct: 249 -------------DTQPEQLALRPKEFFRAY---------GIEVLTEAQVVTVDVRTKKV 286
Query: 929 KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSI 1108
DG ++ Y K L+A G +P++LS G EV++ T+ R D + +++R +++
Sbjct: 287 VFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANRVVRLARG-RNV 341
Query: 1109 TIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV 1288
++G GFLG E+A L KA ++ V++L E+ + L E + M+ VK
Sbjct: 342 VVVGAGFLGMEVAAYLTEKAHSV--SVVEL--EETPFRRFLGERVGRALMKMFENNRVKF 397
Query: 1289 LPNAIVQSVGVSGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 1465
V + GKL + LK + V D V +G P + G+ +DS G
Sbjct: 398 YMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSR-GFIP 456
Query: 1466 VNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAK 1621
VN +Q ++ AGDA F R+V H A GR+A +NM +
Sbjct: 457 VNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMSTV 516
Query: 1622 PYWHQSMFWSDL 1657
PY +MF L
Sbjct: 517 PYLWTAMFGKSL 528
>ref|NP_001018070.1| apoptosis-inducing factor 3 isoform 2 [Homo sapiens].
Length = 598
Score = 99.8 bits (247), Expect = 9e-21
Identities = 99/372 (26%), Positives = 156/372 (41%), Gaps = 9/372 (2%)
Frame = +2
Query: 569 PQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSD 748
P S L++G G R+++ + D LPY RP LSK L
Sbjct: 187 PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL---- 242
Query: 749 DPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMA 928
+ + + +P F+ + G+ VLT +VV +DVR
Sbjct: 243 -------------DTQPEQLALRPKEFFRAY---------GIEVLTEAQVVTVDVRTKKV 280
Query: 929 KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSI 1108
DG ++ Y K L+A G +P++LS G EV++ T+ R D + +++R +++
Sbjct: 281 VFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANRVVRLARG-RNV 335
Query: 1109 TIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV 1288
++G GFLG E+A L KA ++ V++L E+ + L E + M+ VK
Sbjct: 336 VVVGAGFLGMEVAAYLTEKAHSV--SVVEL--EETPFRRFLGERVGRALMKMFENNRVKF 391
Query: 1289 LPNAIVQSVGVSGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 1465
V + GKL + LK + V D V +G P + G+ +DS G
Sbjct: 392 YMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSR-GFIP 450
Query: 1466 VNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAK 1621
VN +Q ++ AGDA F R+V H A GR+A +NM +
Sbjct: 451 VNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMSTV 510
Query: 1622 PYWHQSMFWSDL 1657
PY +MF L
Sbjct: 511 PYLWTAMFGKSL 522
>ref|NP_653305.1| apoptosis-inducing factor 3 isoform 1 [Homo sapiens].
Length = 605
Score = 99.8 bits (247), Expect = 9e-21
Identities = 99/372 (26%), Positives = 156/372 (41%), Gaps = 9/372 (2%)
Frame = +2
Query: 569 PQVRVPSHVPFLLIGGGTXXXXXXXXXXXXDPGARVLIVSEDPELPYMRPPLSKELWFSD 748
P S L++G G R+++ + D LPY RP LSK L
Sbjct: 187 PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDRPKLSKSL---- 242
Query: 749 DPNVTKTLRFRQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRGNMA 928
+ + + +P F+ + G+ VLT +VV +DVR
Sbjct: 243 -------------DTQPEQLALRPKEFFRAY---------GIEVLTEAQVVTVDVRTKKV 280
Query: 929 KLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRTLEKISREVKSI 1108
DG ++ Y K L+A G +P++LS G EV++ T+ R D + +++R +++
Sbjct: 281 VFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANRVVRLARG-RNV 335
Query: 1109 TIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKV 1288
++G GFLG E+A L KA ++ V++L E+ + L E + M+ VK
Sbjct: 336 VVVGAGFLGMEVAAYLTEKAHSV--SVVEL--EETPFRRFLGERVGRALMKMFENNRVKF 391
Query: 1289 LPNAIVQSVGVSGGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 1465
V + GKL + LK + V D V +G P + G+ +DS G
Sbjct: 392 YMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSR-GFIP 450
Query: 1466 VNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGENMTG-----AAK 1621
VN +Q ++ AGDA F R+V H A GR+A +NM +
Sbjct: 451 VNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMSTV 510
Query: 1622 PYWHQSMFWSDL 1657
PY +MF L
Sbjct: 511 PYLWTAMFGKSL 522
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 85,871,457
Number of extensions: 2445773
Number of successful extensions: 9016
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8956
Number of HSP's successfully gapped: 12
Length of query: 688
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 579
Effective length of database: 14,704,088
Effective search space: 8513666952
Effective search space used: 8513666952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012979
(2066 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 579 e-162
>Sscrofa_ChrX
|| Length = 144288218
Score = 579 bits (292), Expect = e-162
Identities = 302/304 (99%), Gaps = 1/304 (0%)
Strand = Plus / Minus
Query: 3 aggcgctcttccccttcccctgccggagctggccggcttggctgtccaatgcccacccgg 62
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 122476769 aggcgctcttccccttccc-tgccggagctggccggcttagctgtccaatgcccacccgg 122476711
Query: 63 agctgggaggaggagcctgcgtagagtgcgtgtgaagggagcaaggggaacggcccgggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122476710 agctgggaggaggagcctgcgtagagtgcgtgtgaagggagcaaggggaacggcccgggg 122476651
Query: 123 cccttggtgtttgacccgtccgtcggtgcgtaagaagaaaggaaaggaggcggcggtcca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122476650 cccttggtgtttgacccgtccgtcggtgcgtaagaagaaaggaaaggaggcggcggtcca 122476591
Query: 183 gagtagcggttgccgaaatgttccggtgtggaggcttggcggcgggtgctttgaagcaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122476590 gagtagcggttgccgaaatgttccggtgtggaggcttggcggcgggtgctttgaagcaga 122476531
Query: 243 agctggcgcccttggtgcggacggtgtgcgtccgaggcccgaggcagaggaaccggctcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122476530 agctggcgcccttggtgcggacggtgtgcgtccgaggcccgaggcagaggaaccggctcc 122476471
Query: 303 cagg 306
||||
Sbjct: 122476470 cagg 122476467
Score = 349 bits (176), Expect = 4e-93
Identities = 195/200 (97%), Gaps = 1/200 (0%)
Strand = Plus / Minus
Query: 1770 caggaactggtatccgatcagagagtgagacggagtccgaggccccggaaatcactctgc 1829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122445811 caggaactggtatccgatcagagagtgagacggagtccgaggccccggaaatcactctgc 122445752
Query: 1830 ccgtcggcagccctgcggtcccccaggcccccaccccaggggaggactacggcaaaggcg 1889
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 122445751 ccgtcggcagccctgcggtcccccaggcccccacccaaggggaggactacggcaaaggcg 122445692
Query: 1890 tcatcttctacctccgggacaaagtggtggtagggatcgtgctgtggaacgtctttcacc 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 122445691 tcatcttctacctccgggacaaagtggtggtagggatcgtgctgtggaacgtcttcaacc 122445632
Query: 1950 g-attcccatcgcgaggaag 1968
| || |||||||||||||||
Sbjct: 122445631 gaatgcccatcgcgaggaag 122445612
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 304 aggcaacttgttccagcgatggcatgttcctctagaactccagatgacaagacaaatggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122468576 aggcaacttgttccagcgatggcatgttcctctagaactccagatgacaagacaaatggc 122468517
Query: 364 tagctctggtgcatcagggggcaaaatcgataatactgtgttagtcctttttgtgggctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122468516 tagctctggtgcatcagggggcaaaatcgataatactgtgttagtcctttttgtgggctt 122468457
Query: 424 atcaacaataggagctggtgcatatg 449
||||||||||||||||||||||||||
Sbjct: 122468456 atcaacaataggagctggtgcatatg 122468431
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 1504 ggcaggagatgccgcatgtttctacgatataaagttgggtaggaggcgagtagagcacca 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122449716 ggcaggagatgccgcatgtttctacgatataaagttgggtaggaggcgagtagagcacca 122449657
Query: 1564 tgatcacgctgttgtgagtggaagattggccggagaaaatatgactggagctgctaagcc 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122449656 tgatcacgctgttgtgagtggaagattggccggagaaaatatgactggagctgctaagcc 122449597
Query: 1624 atactggcatcagtcaatgttctgg 1648
|||||||||||||||||||||||||
Sbjct: 122449596 atactggcatcagtcaatgttctgg 122449572
Score = 285 bits (144), Expect = 5e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1362 aggtagaaactgaccatatagtggcagctgtgggcctggagcccaacgtcgagttggcta 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122451581 aggtagaaactgaccatatagtggcagctgtgggcctggagcccaacgtcgagttggcta 122451522
Query: 1422 agactggtggactagaaatagactctgatttcggtggcttccgggtcaatgcagaactcc 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122451521 agactggtggactagaaatagactctgatttcggtggcttccgggtcaatgcagaactcc 122451462
Query: 1482 aggcccgctctaacatctgggtgg 1505
||||||||||||||||||||||||
Sbjct: 122451461 aggcccgctctaacatctgggtgg 122451438
Score = 262 bits (132), Expect = 7e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 673 ggtgctgattgtatctgaagatcctgagctgccatacatgcgacctcctctttcaaaaga 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122462680 ggtgctgattgtatctgaagatcctgagctgccatacatgcgacctcctctttcaaaaga 122462621
Query: 733 actgtggttttcagatgatccaaatgtcacaaagacactgcgattcagacaatggaatgg 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122462620 actgtggttttcagatgatccaaatgtcacaaagacactgcgattcagacaatggaatgg 122462561
Query: 793 aaaagagaggag 804
||||||||||||
Sbjct: 122462560 aaaagagaggag 122462549
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 548 gctccagaaggagagccggttcctcaggtcagggtaccaagtcatgttccattcttgctc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122462937 gctccagaaggagagccggttcctcaggtcagggtaccaagtcatgttccattcttgctc 122462878
Query: 608 attggtggaggcactgctgcttttgctgcagccagatccatccgggctcgggatcctggg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122462877 attggtggaggcactgctgcttttgctgcagccagatccatccgggctcgggatcctggg 122462818
Query: 668 gccagggt 675
||||||||
Sbjct: 122462817 gccagggt 122462810
Score = 252 bits (127), Expect = 7e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 1647 ggagtgatttgggccctgatgttggctatgaagctatcggtcttgtggacagtagtttgc 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122447720 ggagtgatttgggccctgatgttggctatgaagctatcggtcttgtggacagtagtttgc 122447661
Query: 1707 ctacagttggtgtttttgcaaaagcaactgcacaagacaaccccaaatctgccacagagc 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122447660 ctacagttggtgtttttgcaaaagcaactgcacaagacaaccccaaatctgccacagagc 122447601
Query: 1767 agtcagg 1773
|||||||
Sbjct: 122447600 agtcagg 122447594
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1056 agattggagactttagaaccttagagaagatttcccgggaagtcaagtcgattacgatta 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122453915 agattggagactttagaaccttagagaagatttcccgggaagtcaagtcgattacgatta 122453856
Query: 1116 tcggtgggggcttccttggtagcgaactggcctgtgctcttggcagaaaag 1166
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122453855 tcggtgggggcttccttggtagcgaactggcctgtgctcttggcagaaaag 122453805
Score = 218 bits (110), Expect = 9e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1165 agctcgagccttgggcacagaggtgattcagctcttccccgagaaaggaaacatgggaaa 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122453057 agctcgagccttgggcacagaggtgattcagctcttccccgagaaaggaaacatgggaaa 122452998
Query: 1225 gatcctccctgaatacctcagcaactggaccatggaaaaagtcagacgag 1274
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122452997 gatcctccctgaatacctcagcaactggaccatggaaaaagtcagacgag 122452948
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 803 agcatttatttccagccaccttctttctatgtctctgcccaggacctgcctcacattgag 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122460640 agcatttatttccagccaccttctttctatgtctctgcccaggacctgcctcacattgag 122460581
Query: 863 aatgggggagtggctgtcctcactgggaagaaggta 898
||||||||||||||||||||||||||||||||||||
Sbjct: 122460580 aatgggggagtggctgtcctcactgggaagaaggta 122460545
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1273 agaaggggttaaggtgctgcccaatgctattgtgcaatcagttggagtcagcggtggcaa 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122452618 agaaggggttaaggtgctgcccaatgctattgtgcaatcagttggagtcagcggtggcaa 122452559
Query: 1333 gttactcatcaagctgaaagatggccggaaggta 1366
||||||||||||||||||||||||||||||||||
Sbjct: 122452558 gttactcatcaagctgaaagatggccggaaggta 122452525
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 894 aggtagtacagctggatgtgagaggcaacatggcgaaacttaatgatggctctcaaataa 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122456128 aggtagtacagctggatgtgagaggcaacatggcgaaacttaatgatggctctcaaataa 122456069
Query: 954 cctatgaaaagtgcttgattgcaacagg 981
||||||||||||||||||||||||||||
Sbjct: 122456068 cctatgaaaagtgcttgattgcaacagg 122456041
Score = 159 bits (80), Expect = 7e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 978 caggaggcactccaagaagtctctctgccatcgacagggctggagcagaggtgaagagta 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122455093 caggaggcactccaagaagtctctctgccatcgacagggctggagcagaggtgaagagta 122455034
Query: 1038 gaacaacacttttcagaaag 1057
||||||||||||||||||||
Sbjct: 122455033 gaacaacacttttcagaaag 122455014
Score = 157 bits (79), Expect = 3e-35
Identities = 93/100 (93%)
Strand = Plus / Minus
Query: 449 gcctacaggacaataaaagataacnnnnnnngatataatgaaagaattgcaggattaggg 508
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 122464246 gcctacaggacaataaaagataacaaaaaaagatataatgaaagaattgcaggattaggg 122464187
Query: 509 ctgacaccagaagagaagcagaaaagggccacatcatctg 548
||||||||||||||||||||||||||||||||||||||||
Sbjct: 122464186 ctgacaccagaagagaagcagaaaagggccacatcatctg 122464147
Score = 139 bits (70), Expect = 7e-30
Identities = 97/102 (95%), Gaps = 3/102 (2%)
Strand = Plus / Minus
Query: 1967 agatcattaaggacggtgagcagcacgaagatctcaatgaagtagcccagctcttc-aca 2025
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 122445314 agatcattaaggacggtgagcagcacgaagatctcaatgaagtagccaagctcttcaaca 122445255
Query: 2026 ttcatgaagactgaaggccctttgtgc-ataggcaggcactt 2066
||||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 122445254 ttcatgaggactgaaggccc-ttgtgcaataggcaggcactt 122445214
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,283,308
Number of extensions: 387
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 16
Length of query: 2066
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2044
Effective length of database: 2,808,408,574
Effective search space: 5740387125256
Effective search space used: 5740387125256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)