Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012986
(1076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,444,697
Number of extensions: 692304
Number of successful extensions: 1734
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1729
Number of HSP's successfully gapped: 0
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012986
(1076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786989.2| cytochrome c oxidase subunit 7B, mitochondrial ... 150 2e-36
Alignment gi|XP_002694556.1| PREDICTED: COX7B protein-like [Bos taurus]. 150 2e-36
Alignment gi|XP_002689104.1| PREDICTED: COX7B protein-like [Bos taurus]. 150 2e-36
Alignment gi|XP_002701760.1| PREDICTED: COX7B protein-like [Bos taurus]. 150 2e-36
Alignment gi|XP_002704885.1| PREDICTED: COX7B protein-like [Bos taurus]. 148 7e-36
Alignment gi|XP_002696331.1| PREDICTED: COX7B protein-like [Bos taurus]. 148 9e-36
Alignment gi|XP_002702533.1| PREDICTED: COX7B protein-like [Bos taurus]. 148 9e-36
Alignment gi|XP_002700467.1| PREDICTED: COX7B protein-like [Bos taurus]. 142 7e-34
Alignment gi|XP_002688282.1| PREDICTED: hypothetical protein MGC127695 [B... 115 5e-26
Alignment gi|XP_002704615.1| PREDICTED: hypothetical protein MGC127695 [B... 115 5e-26
>ref|NP_786989.2| cytochrome c oxidase subunit 7B, mitochondrial precursor [Bos
taurus].
Length = 80
Score = 150 bits (379), Expect = 2e-36
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALSRLRV++IQQ +ARQ HQKRAPDFHDKYGNA+LASGATFCVAVW Y ATQI
Sbjct: 1 MFPLAKNALSRLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 61 GIEWNPSPVGRVTPKEWREQ 80
>ref|XP_002694556.1| PREDICTED: COX7B protein-like [Bos taurus].
Length = 85
Score = 150 bits (379), Expect = 2e-36
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALSRLRV++IQQ +ARQ HQKRAPDFHDKYGNA+LASGATFCVAVW Y ATQI
Sbjct: 6 MFPLAKNALSRLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQI 65
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 66 GIEWNPSPVGRVTPKEWREQ 85
>ref|XP_002689104.1| PREDICTED: COX7B protein-like [Bos taurus].
Length = 85
Score = 150 bits (379), Expect = 2e-36
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALSRLRV++IQQ +ARQ HQKRAPDFHDKYGNA+LASGATFCVAVW Y ATQI
Sbjct: 6 MFPLAKNALSRLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQI 65
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 66 GIEWNPSPVGRVTPKEWREQ 85
>ref|XP_002701760.1| PREDICTED: COX7B protein-like [Bos taurus].
Length = 85
Score = 150 bits (379), Expect = 2e-36
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALSRLRV++IQQ +ARQ HQKRAPDFHDKYGNA+LASGATFCVAVW Y ATQI
Sbjct: 6 MFPLAKNALSRLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQI 65
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 66 GIEWNPSPVGRVTPKEWREQ 85
>ref|XP_002704885.1| PREDICTED: COX7B protein-like [Bos taurus].
Length = 85
Score = 148 bits (374), Expect = 7e-36
Identities = 69/80 (86%), Positives = 74/80 (92%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALS LRV++IQQ +ARQ HQKRAPDFHDKYGNA+LASGATFCVAVW Y ATQI
Sbjct: 6 MFPLAKNALSHLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCVAVWVYMATQI 65
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 66 GIEWNPSPVGRVTPKEWREQ 85
>ref|XP_002696331.1| PREDICTED: COX7B protein-like [Bos taurus].
Length = 85
Score = 148 bits (373), Expect = 9e-36
Identities = 69/80 (86%), Positives = 74/80 (92%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALS LRV++IQQ +ARQ HQKRAPDFHDKYGNA+LASGATFC AVW YTATQI
Sbjct: 6 MFPLAKNALSCLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCAAVWVYTATQI 65
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 66 GIEWNPSPVGRVTPKEWREQ 85
>ref|XP_002702533.1| PREDICTED: COX7B protein-like [Bos taurus].
Length = 85
Score = 148 bits (373), Expect = 9e-36
Identities = 69/80 (86%), Positives = 74/80 (92%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALS LRV++IQQ +ARQ HQKRAPDFHDKYGNA+LASGATFC AVW YTATQI
Sbjct: 6 MFPLAKNALSCLRVQSIQQAVARQIHQKRAPDFHDKYGNAVLASGATFCAAVWVYTATQI 65
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 66 GIEWNPSPVGRVTPKEWREQ 85
>ref|XP_002700467.1| PREDICTED: COX7B protein-like [Bos taurus].
Length = 85
Score = 142 bits (357), Expect = 7e-34
Identities = 66/80 (82%), Positives = 73/80 (91%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALS LRV++IQQ +A+Q HQKRAPDFHDKYGNA+LASGATFC+AV Y ATQI
Sbjct: 6 MFPLAKNALSHLRVQSIQQAVAKQIHQKRAPDFHDKYGNAVLASGATFCIAVGVYMATQI 65
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN SPVGRVTPKEWRE+
Sbjct: 66 GIEWNPSPVGRVTPKEWREQ 85
>ref|XP_002688282.1| PREDICTED: hypothetical protein MGC127695 [Bos taurus].
Length = 79
Score = 115 bits (289), Expect = 5e-26
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL +NALS LR+R IQQ RQ+H K +PDFHDKYG+ +LASG +FC+ W + TQI
Sbjct: 2 MFPLVRNALSSLRIRRIQQI--RQSHSKHSPDFHDKYGDILLASGTSFCLVTWVFLVTQI 59
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GI+W SPVGRVTP+EW EE
Sbjct: 60 GIQWGCSPVGRVTPQEWNEE 79
>ref|XP_002704615.1| PREDICTED: hypothetical protein MGC127695 [Bos taurus].
Length = 79
Score = 115 bits (289), Expect = 5e-26
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL +NALS LR+R IQQ RQ+H K +PDFHDKYG+ +LASG +FC+ W + TQI
Sbjct: 2 MFPLVRNALSSLRIRRIQQI--RQSHSKHSPDFHDKYGDILLASGTSFCLVTWVFLVTQI 59
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GI+W SPVGRVTP+EW EE
Sbjct: 60 GIQWGCSPVGRVTPQEWNEE 79
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,533,717
Number of extensions: 789608
Number of successful extensions: 1618
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1609
Number of HSP's successfully gapped: 10
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012986
(1076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135249.1| PREDICTED: cytochrome c oxidase subunit 7B, ... 169 3e-42
Alignment gi|XP_003129002.1| PREDICTED: cytochrome c oxidase subunit 7B2,... 124 9e-29
>ref|XP_003135249.1| PREDICTED: cytochrome c oxidase subunit 7B, mitochondrial-like [Sus
scrofa].
Length = 80
Score = 169 bits (427), Expect = 3e-42
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI
Sbjct: 1 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWNLSPVGRVTPKEWREE
Sbjct: 61 GIEWNLSPVGRVTPKEWREE 80
>ref|XP_003129002.1| PREDICTED: cytochrome c oxidase subunit 7B2, mitochondrial-like
[Sus scrofa].
Length = 80
Score = 124 bits (311), Expect = 9e-29
Identities = 53/80 (66%), Positives = 62/80 (77%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL +N LS +R+R+IQQ RQNH K +PDFHDKYGN +LA G FC+ W ATQI
Sbjct: 1 MFPLVRNVLSSIRIRSIQQIRTRQNHSKYSPDFHDKYGNILLAGGTAFCLVAWVLIATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWNLSPVGRVTPKEW ++
Sbjct: 61 GIEWNLSPVGRVTPKEWNDD 80
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,610,551
Number of extensions: 700593
Number of successful extensions: 1028
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012986
(1076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079655.1| cytochrome c oxidase subunit 7B, mitochondrial ... 144 1e-34
Alignment gi|NP_084328.1| cytochrome c oxidase subunit VIIb2 [Mus musculu... 88 1e-17
>ref|NP_079655.1| cytochrome c oxidase subunit 7B, mitochondrial precursor [Mus
musculus].
Length = 80
Score = 144 bits (363), Expect = 1e-34
Identities = 65/80 (81%), Positives = 73/80 (91%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
M PLAKNALSRL+VR+IQQ +ARQ+HQKRAP FHDKYGNAILA GA FCV+ W YTATQI
Sbjct: 1 MLPLAKNALSRLQVRSIQQVVARQSHQKRAPSFHDKYGNAILAGGAIFCVSTWTYTATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWN+SPVGRVTPKEWR++
Sbjct: 61 GIEWNMSPVGRVTPKEWRDQ 80
>ref|NP_084328.1| cytochrome c oxidase subunit VIIb2 [Mus musculus].
Length = 82
Score = 88.2 bits (217), Expect = 1e-17
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQK-RAPDFHDKYGNAILASGATFCVAVWAYTATQ 298
MFPLA+ AL+ L+ +I + + R H K + + HDKYGN +L SG FC+A + TQ
Sbjct: 2 MFPLARYALNYLKTPSILKIVGRLKHSKPSSEETHDKYGNMMLISGTIFCLAGYTIYMTQ 61
Query: 299 IGIEWNLSPVGRVTPKEWREE 361
+G+EWNLSP+GRVTP+EW+++
Sbjct: 62 MGVEWNLSPIGRVTPQEWKKK 82
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,728,929
Number of extensions: 563884
Number of successful extensions: 1409
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1401
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012986
(1076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001857.1| cytochrome c oxidase subunit 7B, mitochondrial ... 146 3e-35
Alignment gi|NP_570972.2| cytochrome c oxidase subunit 7B2, mitochondrial... 134 2e-31
Alignment gi|XP_002342149.1| PREDICTED: cytochrome c oxidase subunit 7B, ... 132 5e-31
Alignment gi|XP_003119837.1| PREDICTED: cytochrome c oxidase subunit 7B, ... 132 5e-31
Alignment gi|XP_002342160.1| PREDICTED: cytochrome c oxidase subunit 7B, ... 115 9e-26
Alignment gi|XP_003119807.1| PREDICTED: cytochrome c oxidase subunit 7B, ... 115 9e-26
>ref|NP_001857.1| cytochrome c oxidase subunit 7B, mitochondrial precursor [Homo
sapiens].
Length = 80
Score = 146 bits (369), Expect = 3e-35
Identities = 64/80 (80%), Positives = 73/80 (91%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL K+AL+RL+VR+IQQTMARQ+HQKR PDFHDKYGNA+LASGATFC+ W Y ATQ+
Sbjct: 1 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWNLSPVGRVTPKEWR +
Sbjct: 61 GIEWNLSPVGRVTPKEWRNQ 80
>ref|NP_570972.2| cytochrome c oxidase subunit 7B2, mitochondrial precursor [Homo
sapiens].
Length = 81
Score = 134 bits (336), Expect = 2e-31
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPLA+NALS L++++I Q+MAR +H K +PDFHDKYGNA+LASG FCVA W +TATQI
Sbjct: 2 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWNLSPVGRVTPKEW+ +
Sbjct: 62 GIEWNLSPVGRVTPKEWKHQ 81
>ref|XP_002342149.1| PREDICTED: cytochrome c oxidase subunit 7B, mitochondrial-like
[Homo sapiens].
Length = 80
Score = 132 bits (332), Expect = 5e-31
Identities = 59/80 (73%), Positives = 69/80 (86%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL +N LS L+V++I QT+ARQ+HQK PDFHDKY NA+LASGATF +AVW Y ATQI
Sbjct: 1 MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWNLSP GRVTPKEWR++
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80
>ref|XP_003119837.1| PREDICTED: cytochrome c oxidase subunit 7B, mitochondrial-like
[Homo sapiens].
Length = 80
Score = 132 bits (332), Expect = 5e-31
Identities = 59/80 (73%), Positives = 69/80 (86%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL +N LS L+V++I QT+ARQ+HQK PDFHDKY NA+LASGATF +AVW Y ATQI
Sbjct: 1 MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
GIEWNLSP GRVTPKEWR++
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80
>ref|XP_002342160.1| PREDICTED: cytochrome c oxidase subunit 7B, mitochondrial-like
[Homo sapiens].
Length = 80
Score = 115 bits (287), Expect = 9e-26
Identities = 55/80 (68%), Positives = 64/80 (80%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL KN+LS L V +I QTMARQ+HQKR DFHDK GNA+LASG T C+AVW Y ATQI
Sbjct: 1 MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
I+ NLS VGRVT K+WR++
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80
>ref|XP_003119807.1| PREDICTED: cytochrome c oxidase subunit 7B, mitochondrial-like
[Homo sapiens].
Length = 80
Score = 115 bits (287), Expect = 9e-26
Identities = 55/80 (68%), Positives = 64/80 (80%)
Frame = +2
Query: 122 MFPLAKNALSRLRVRNIQQTMARQNHQKRAPDFHDKYGNAILASGATFCVAVWAYTATQI 301
MFPL KN+LS L V +I QTMARQ+HQKR DFHDK GNA+LASG T C+AVW Y ATQI
Sbjct: 1 MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
Query: 302 GIEWNLSPVGRVTPKEWREE 361
I+ NLS VGRVT K+WR++
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,524,298
Number of extensions: 665216
Number of successful extensions: 1725
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1718
Number of HSP's successfully gapped: 6
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012986
(1076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 724 0.0
Sscrofa_Chr05 557 e-156
Sscrofa_ChrX 398 e-108
gb|JH118738.1| Sus scrofa unplaced genomic scaffold ChrUScaf2165 206 2e-50
Sscrofa_Chr08 100 3e-18
>Sscrofa_Chr07
|| Length = 134764511
Score = 724 bits (365), Expect = 0.0
Identities = 428/449 (95%)
Strand = Plus / Minus
Query: 39 gtttttcagggttctttgcaagggtaccggacgcgtagttgcaagaagctaacggttgca 98
||||||||||| ||||||||||||||| ||| || ||||||||||||| || | ||||||
Sbjct: 62178481 gtttttcagggctctttgcaagggtactggatgcatagttgcaagaaggtagcagttgca 62178422
Query: 99 gcagttttgtctaaagcttcacgatgtttcccttggccaaaaacgcactaagtcgtctca 158
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 62178421 gcagttgtgtctaaagcttcacgatgtttccctcagccaaaaatgcactaagtcgtcttg 62178362
Query: 159 gagttcgaaacattcagcaaacaatggcaaggcagaaccaccagaagcgggcacctgatt 218
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 62178361 gagttcgaaacattcagcaaacaatggcaaggcagaaccaccagaagtgggcacttgatt 62178302
Query: 219 tccatgacaaatatggtaatgctatattagctagtggagccactttctgtgttgctgtat 278
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62178301 tccatgacaaatatggtaatgctgtattagctagtggagccactttctgtgttgctgtat 62178242
Query: 279 gggcatatacagcaacacagattggaatagaatggaacctgtcccctgttggcagagtca 338
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 62178241 gggcatatacagcaacacaaattggaatagaatggaacctgtcccctattggcagagtca 62178182
Query: 339 ccccaaaggaatggagagaagaataatcatcccatctggtttaatactgaattgtttcaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62178181 ccccaaaggaatggagagaagaataatcatcccatctggtttaatactgaattgtttcaa 62178122
Query: 399 aaccacctcataattgatgccaagtaaaagcactgtgtacccattaaaatatggcatgat 458
||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 62178121 aaccacctcataattcatgccaagtaaaagcactgcgtacccattaaagtatggcatgat 62178062
Query: 459 tgaagaaataaagtatatttgaaaccttc 487
|||||||||||||||||||||||||||||
Sbjct: 62178061 tgaagaaataaagtatatttgaaaccttc 62178033
>Sscrofa_Chr05
|| Length = 111506441
Score = 557 bits (281), Expect = e-156
Identities = 405/448 (90%), Gaps = 10/448 (2%)
Strand = Plus / Minus
Query: 40 tttttcagggttctttgcaagggtaccggacgcgtagttgcaagaagctaacggttgcag 99
|||||||||| ||||||||| ||||| | | | ||||||||||||||||| | ||||| |
Sbjct: 82924895 tttttcagggctctttgcaaaggtactgaatgtgtagttgcaagaagctagcagttgcgg 82924836
Query: 100 cagttttgtctaaagcttcacgatgtttcccttggccaaaaacgcactaagtcgtctcag 159
||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||||||
Sbjct: 82924835 cagttttgtctaaagcttcactacgtttcccttggccaaaaatgcactaagtcatctcag 82924776
Query: 160 agttcgaaacattcagcaaacaatggcaaggcagaaccaccagaagcgggcacctgattt 219
|||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 82924775 agttcgaagcattcagcaaacaatggcaaggcggagccaccagaagcaggcacctgattt 82924716
Query: 220 ccatgacaaatatggtaatgctatattagctagtggagccactttctgtgttgctgtatg 279
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 82924715 ccatgacaaatatagtaatgctatattagctagtggagccactttctgtgttgctgtgt- 82924657
Query: 280 ggcatatacagcaacacagattggaatagaatggaacctgtcccctgttggcagagtcac 339
|||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 82924656 ---------tgcaacacaaattacaatcgaatggaacctgtcccctgttggcagagtcac 82924606
Query: 340 cccaaaggaatggagagaagaataatcatcccatctggtttaatactgaattgtttcaaa 399
||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 82924605 cccaaaggactggagagaagagcaatcatcccaactggtttaatactgaattgtttcaaa 82924546
Query: 400 accacctcataattgatgccaagtaaaagcactgtgtacccattaaaatatggcatgatt 459
|||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| |
Sbjct: 82924545 accacctcataattaatgccaagtaaaagctctctgtacccattaaaatatggcatgact 82924486
Query: 460 gaagaaataaagtatatttgaaaccttc 487
||||||||||||||||||||||| ||||
Sbjct: 82924485 gaagaaataaagtatatttgaaatcttc 82924458
Score = 143 bits (72), Expect = 2e-31
Identities = 181/215 (84%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 214 tgatttccatgacaaatatggtaatgctatattagctagtggagccactttctgtgttgc 273
||||||||||||||||||||| ||||||||||||||| ||||| |||| |||| |||||
Sbjct: 73277971 tgatttccatgacaaatatggcaatgctatattagctggtggaagcactctctgagttgc 73278030
Query: 274 tgtatgggcatatacagcaacacagattggaatagaatggaacctgtcccctgttggcag 333
||| || || |||| ||||||| |||| ||||||||||||| ||||||||||||||||
Sbjct: 73278031 tgtgtgaatatgtacaacaacacaaattgaaatagaatggaacttgtcccctgttggcag 73278090
Query: 334 agtcaccccaaaggaatggagagaagaataatcatcccatctggtttaatactgaattgt 393
||| | || ||| ||||||||||| | |||| ||| | ||||| || || ||||||||
Sbjct: 73278091 agtta-cctaaaagaatggagagatcagtaattatcaaagctggtatagtagtgaattgt 73278149
Query: 394 ttcaaaaccacctcataattgatgccaagtaaaag 428
|||||||| | ||| ||||||||||||||||||
Sbjct: 73278150 ttcaaaacaa--acattattgatgccaagtaaaag 73278182
>Sscrofa_ChrX
|| Length = 144288218
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 287 acagcaacacagattggaatagaatggaacctgtcccctgttggcagagtcaccccaaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70887565 acagcaacacagattggaatagaatggaacctgtcccctgttggcagagtcaccccaaag 70887624
Query: 347 gaatggagagaagaataatcatcccatctggtttaatactgaattgtttcaaaaccacct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70887625 gaatggagagaagaataatcatcccatctggtttaatactgaattgtttcaaaaccacct 70887684
Query: 407 cataattgatgccaagtaaaagcactgtgtacccattaaaatatggcatgattgaagaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70887685 cataattgatgccaagtaaaagcactgtgtacccattaaaatatggcatgattgaagaaa 70887744
Query: 467 taaagtatatttgaaaccttc 487
|||||||||||||||||||||
Sbjct: 70887745 taaagtatatttgaaaccttc 70887765
Score = 285 bits (144), Expect = 2e-74
Identities = 147/148 (99%)
Strand = Plus / Plus
Query: 14 tttgagtgcagccgaaagccatttggtttttcagggttctttgcaagggtaccggacgcg 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 70881146 tttgagtgcagccgaaagccattttgtttttcagggttctttgcaagggtaccggacgcg 70881205
Query: 74 tagttgcaagaagctaacggttgcagcagttttgtctaaagcttcacgatgtttcccttg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70881206 tagttgcaagaagctaacggttgcagcagttttgtctaaagcttcacgatgtttcccttg 70881265
Query: 134 gccaaaaacgcactaagtcgtctcagag 161
||||||||||||||||||||||||||||
Sbjct: 70881266 gccaaaaacgcactaagtcgtctcagag 70881293
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 160 agttcgaaacattcagcaaacaatggcaaggcagaaccaccagaagcgggcacctgattt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70883409 agttcgaaacattcagcaaacaatggcaaggcagaaccaccagaagcgggcacctgattt 70883468
Query: 220 ccatgacaaatatggtaatgctatattagctagtggagccactttctgtgttgctgtatg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70883469 ccatgacaaatatggtaatgctatattagctagtggagccactttctgtgttgctgtatg 70883528
Query: 280 ggcatat 286
|||||||
Sbjct: 70883529 ggcatat 70883535
>gb|JH118738.1| Sus scrofa unplaced genomic scaffold ChrUScaf2165
Length = 128094
Score = 206 bits (104), Expect = 2e-50
Identities = 197/228 (86%), Gaps = 10/228 (4%)
Strand = Plus / Plus
Query: 210 cacctgatttccatgacaaatatggtaatgctatattagctagtggagccactttctgtg 269
||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 69662 cacctgatttccatgacaaatatagtaatgcta---------gtggagccactttctgtg 69712
Query: 270 ttgctgtatgggcatatacagcaacacagattggaatagaatggaacctgtcccctgttg 329
|||||||||||||||| |||| ||||| ||| ||||| |||||||||||||| ||||||
Sbjct: 69713 ttgctgtatgggcataggcagcgacacaaattagaatataatggaacctgtcctctgttg 69772
Query: 330 gcagagtcaccccaaaggaatggagagaagaataatcatcccatctggtttaatactgaa 389
||||||| |||||||| ||||||||| | | ||||||| ||| ||||| ||||||||||
Sbjct: 69773 gcagagtaaccccaaaagaatggagaaatcagtaatcat-ccagctggtgtaatactgaa 69831
Query: 390 ttgtttcaaaaccacctcataattgatgccaagtaaaagcactgtgta 437
||| |||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 69832 ttgcttcaaaaccaacttgtaactgatgccaagtaaaagcactgtgta 69879
>Sscrofa_Chr08
|| Length = 148491826
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 293 acacagattggaatagaatggaacctgtcccctgttggcagagtcacccc 342
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38607052 acacagattggaatagaatggaacctgtcccctgttggcagagtcacccc 38607003
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,911,144
Number of extensions: 330
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 9
Length of query: 1076
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1055
Effective length of database: 2,808,413,156
Effective search space: 2962875879580
Effective search space used: 2962875879580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)