Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012990
(1594 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007808.1| RING finger protein 113A [Bos taurus]. 533 e-151
Alignment gi|XP_002699125.1| PREDICTED: ring finger protein 113A-like [Bo... 484 e-137
Alignment gi|XP_596209.3| PREDICTED: ring finger protein 113A [Bos taurus]. 484 e-137
Alignment gi|NP_786988.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 72 1e-12
Alignment gi|XP_002700003.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 69 2e-11
Alignment gi|XP_001249375.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 69 2e-11
>ref|NP_001007808.1| RING finger protein 113A [Bos taurus].
Length = 343
Score = 533 bits (1374), Expect = e-151
Identities = 259/306 (84%), Positives = 263/306 (85%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXTVVRPEKKR 855
MAEQLSPGKTTDQVCTFLF IC+Q TVVRPEKKR
Sbjct: 1 MAEQLSPGKTTDQVCTFLFKKPGRKVAAGRRKRPICNQESGDSSSSSDEGNTVVRPEKKR 60
Query: 856 ATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVGPEDMGATAV 1035
A HNPMIQKTRGSGKQK AYGDL LGVVYKSTRSAKPVGPEDMGATAV
Sbjct: 61 AVHNPMIQKTRGSGKQKVAYGDLSSEEEEENKSES-LGVVYKSTRSAKPVGPEDMGATAV 119
Query: 1036 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 1215
YELDTEKERDAQAIFERSQKIQEELRG+EDDKIYRGINNYQK+MKPKDTSMGNASSGMVR
Sbjct: 120 YELDTEKERDAQAIFERSQKIQEELRGQEDDKIYRGINNYQKFMKPKDTSMGNASSGMVR 179
Query: 1216 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 1395
KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG
Sbjct: 180 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 239
Query: 1396 RYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVC 1575
RYGVYEDENYEVGSDEEEIPFKCFICRQTF+NPVVTKCRHYFCESCALQHFRTTPRCYVC
Sbjct: 240 RYGVYEDENYEVGSDEEEIPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRTTPRCYVC 299
Query: 1576 DQQTNG 1593
DQQTNG
Sbjct: 300 DQQTNG 305
>ref|XP_002699125.1| PREDICTED: ring finger protein 113A-like [Bos taurus].
Length = 351
Score = 484 bits (1247), Expect = e-137
Identities = 239/315 (75%), Positives = 249/315 (79%), Gaps = 9/315 (2%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXT-------- 831
MAEQLSPGKTTDQVCTFLF ICDQ +
Sbjct: 1 MAEQLSPGKTTDQVCTFLFRKPGRKGGAGRRKRLICDQESGGGGGGGGGSSSSSSGDEGN 60
Query: 832 -VVRPEKKRATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVG 1008
VVRPEKKRA H PMIQKT G GKQK A G+ LGVVYKSTRSAKPVG
Sbjct: 61 RVVRPEKKRAIHTPMIQKTWGGGKQKGASGN--RSSEEEVEEPESLGVVYKSTRSAKPVG 118
Query: 1009 PEDMGATAVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSM 1188
PEDMGATAVYELDTEKERDAQAIFERS+KI+EELRGKEDDKIYRG+NNYQKYM+PKD S
Sbjct: 119 PEDMGATAVYELDTEKERDAQAIFERSRKIREELRGKEDDKIYRGMNNYQKYMRPKDASA 178
Query: 1189 GNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGW 1368
G+ SSGM RKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGW
Sbjct: 179 GSDSSGMARKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGW 238
Query: 1369 QIERELDEGRYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHF 1548
QI+RELDEGRYGV EDENYEV DEEE+PFKCFICRQTF+NPVVTKCRHYFCE CALQHF
Sbjct: 239 QIQRELDEGRYGVDEDENYEVARDEEELPFKCFICRQTFQNPVVTKCRHYFCEGCALQHF 298
Query: 1549 RTTPRCYVCDQQTNG 1593
RTT RCYVCDQQTNG
Sbjct: 299 RTTSRCYVCDQQTNG 313
>ref|XP_596209.3| PREDICTED: ring finger protein 113A [Bos taurus].
Length = 351
Score = 484 bits (1247), Expect = e-137
Identities = 239/315 (75%), Positives = 249/315 (79%), Gaps = 9/315 (2%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXT-------- 831
MAEQLSPGKTTDQVCTFLF ICDQ +
Sbjct: 1 MAEQLSPGKTTDQVCTFLFRKPGRKGGAGRRKRLICDQESGGGGGGGGGSSSSSSGDEGN 60
Query: 832 -VVRPEKKRATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVG 1008
VVRPEKKRA H PMIQKT G GKQK A G+ LGVVYKSTRSAKPVG
Sbjct: 61 RVVRPEKKRAIHTPMIQKTWGGGKQKGASGN--RSSEEEVEEPESLGVVYKSTRSAKPVG 118
Query: 1009 PEDMGATAVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSM 1188
PEDMGATAVYELDTEKERDAQAIFERS+KI+EELRGKEDDKIYRG+NNYQKYM+PKD S
Sbjct: 119 PEDMGATAVYELDTEKERDAQAIFERSRKIREELRGKEDDKIYRGMNNYQKYMRPKDASA 178
Query: 1189 GNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGW 1368
G+ SSGM RKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGW
Sbjct: 179 GSDSSGMARKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGW 238
Query: 1369 QIERELDEGRYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHF 1548
QI+RELDEGRYGV EDENYEV DEEE+PFKCFICRQTF+NPVVTKCRHYFCE CALQHF
Sbjct: 239 QIQRELDEGRYGVDEDENYEVARDEEELPFKCFICRQTFQNPVVTKCRHYFCEGCALQHF 298
Query: 1549 RTTPRCYVCDQQTNG 1593
RTT RCYVCDQQTNG
Sbjct: 299 RTTSRCYVCDQQTNG 313
>ref|NP_786988.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Bos
taurus].
Length = 70
Score = 72.0 bits (175), Expect = 1e-12
Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGCPF---FISVEFDGKR*VHLWS 192
MWFE+LPGIAVM CLFIPGMATA IH+F+NGGK K+ + + +E D +
Sbjct: 1 MWFEVLPGIAVMGVCLFIPGMATARIHRFSNGGKEKRVAHYPYQWYLMERDRR---VSGV 57
Query: 191 YRYHVTKGLENIE 153
R +V+KGLENI+
Sbjct: 58 NRSYVSKGLENID 70
>ref|XP_002700003.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 70
Score = 68.6 bits (166), Expect = 2e-11
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGCPF----FISVEFDGKR*VHLW 195
MWFE+LPGIAVM CLFIPGMAT IH+F+NGGK K+ + ++ V R V
Sbjct: 1 MWFEVLPGIAVMGMCLFIPGMATTCIHRFSNGGKEKRVAHYPYQWYLMVR---DRRVSGV 57
Query: 194 SYRYHVTKGLENIE 153
++ Y V+KGLENI+
Sbjct: 58 NHSY-VSKGLENID 70
>ref|XP_001249375.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 70
Score = 68.6 bits (166), Expect = 2e-11
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGCPF----FISVEFDGKR*VHLW 195
MWFE+LPGIAVM CLFIPGMAT IH+F+NGGK K+ + ++ V R V
Sbjct: 1 MWFEVLPGIAVMGMCLFIPGMATTCIHRFSNGGKEKRVAHYPYQWYLMVR---DRRVSGV 57
Query: 194 SYRYHVTKGLENIE 153
++ Y V+KGLENI+
Sbjct: 58 NHSY-VSKGLENID 70
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,512,568
Number of extensions: 1413170
Number of successful extensions: 6646
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6592
Number of HSP's successfully gapped: 6
Length of query: 531
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 424
Effective length of database: 14,140,958
Effective search space: 5995766192
Effective search space used: 5995766192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012990
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012990
(1594 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538154.2| PREDICTED: similar to Zinc finger protein 183 (... 532 e-151
Alignment gi|XP_537309.2| PREDICTED: similar to Zinc finger protein 183 (... 447 e-125
Alignment gi|XP_538155.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 78 3e-14
Alignment gi|XP_850490.1| PREDICTED: similar to NADH-ubiquinone oxidoredu... 75 2e-13
>ref|XP_538154.2| PREDICTED: similar to Zinc finger protein 183 (RING finger protein
113) [Canis familiaris].
Length = 348
Score = 532 bits (1371), Expect = e-151
Identities = 261/310 (84%), Positives = 264/310 (85%), Gaps = 4/310 (1%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXX-ICDQXXXXXXXXXXXXXTVVRPEKK 852
MAEQLSPGKTTDQVCTFLF +CDQ TVVRPEKK
Sbjct: 1 MAEQLSPGKTTDQVCTFLFKKPGGRKGAAGRRKRPVCDQEPGDSSSSSDEGSTVVRPEKK 60
Query: 853 RATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXX---LGVVYKSTRSAKPVGPEDMG 1023
RA HNPMIQKTRGSGKQKAAYGDL LGVVYKSTRSAKPVGPEDMG
Sbjct: 61 RAIHNPMIQKTRGSGKQKAAYGDLSSEEEEEKEEENESESLGVVYKSTRSAKPVGPEDMG 120
Query: 1024 ATAVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASS 1203
ATAVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASS
Sbjct: 121 ATAVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASS 180
Query: 1204 GMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERE 1383
GMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERE
Sbjct: 181 GMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERE 240
Query: 1384 LDEGRYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPR 1563
LDEGRYGVYEDENYEVGSD+EEIPFKCFICRQTF+NPVVTKCRHYFCESCALQHFRTTPR
Sbjct: 241 LDEGRYGVYEDENYEVGSDDEEIPFKCFICRQTFQNPVVTKCRHYFCESCALQHFRTTPR 300
Query: 1564 CYVCDQQTNG 1593
CYVCDQQTNG
Sbjct: 301 CYVCDQQTNG 310
>ref|XP_537309.2| PREDICTED: similar to Zinc finger protein 183 (RING finger protein
113) [Canis familiaris].
Length = 382
Score = 447 bits (1150), Expect = e-125
Identities = 229/339 (67%), Positives = 251/339 (74%), Gaps = 8/339 (2%)
Frame = +1
Query: 601 TTCSDVKKPR--AT*QASVVPELKTLKMAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXX 774
T+C+DVK P +T + S P+ K MAE LSPGKTTDQVCTFLF
Sbjct: 9 TSCNDVKGPAWPSTPRPSGAPDSK---MAEPLSPGKTTDQVCTFLFKKPGGGRGAAGRRR 65
Query: 775 X-ICDQXXXXXXXXXXXXXTVVRPEKKRATHNPMIQKTRGSGK----QKAAYGD-LXXXX 936
CDQ VVRPEK+RA +PMIQ TRG G+ QKAA G
Sbjct: 66 RGRCDQEPGDRGSGSDQGSAVVRPEKQRAAGDPMIQTTRGRGRGRGTQKAACGHPSSEEE 125
Query: 937 XXXXXXXXXLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQAIFERSQKIQEELRG 1116
LGV Y+STRSA P GP D+GATA E D +ERDAQAIFERS+KIQEELR
Sbjct: 126 GAEEPEAQSLGVAYRSTRSATPAGPGDVGATARSEPDPGEERDAQAIFERSRKIQEELRP 185
Query: 1117 KEDDKIYRGINNYQKYMKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYK 1296
KEDDKIYRG NNYQKYMKPKDTS+G ASSGMVRKGPIRAPEH ATVRWDYQPD CKD+K
Sbjct: 186 KEDDKIYRGSNNYQKYMKPKDTSLGRASSGMVRKGPIRAPEHPCATVRWDYQPDTCKDFK 245
Query: 1297 ETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGVYEDENYEVGSDEEEIPFKCFICR 1476
ETGFCGFGDSCKFLHDRSDYKHGWQ+EREL++GRYGVY DENY+VGSD+EEIP +C ICR
Sbjct: 246 ETGFCGFGDSCKFLHDRSDYKHGWQVERELEDGRYGVYGDENYDVGSDDEEIPLRCLICR 305
Query: 1477 QTFRNPVVTKCRHYFCESCALQHFRTTPRCYVCDQQTNG 1593
QTF NPVVT+CRHYFCESCAL+HFRTTPRCYVCDQQTNG
Sbjct: 306 QTFENPVVTRCRHYFCESCALRHFRTTPRCYVCDQQTNG 344
>ref|XP_538155.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase MWFE subunit
(Complex I-MWFE) (CI-MWFE) [Canis familiaris].
Length = 70
Score = 77.8 bits (190), Expect = 3e-14
Identities = 42/72 (58%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGC--PFFISVEFDGKR*VHLWSY 189
MWFEILPGI VMA CL IPG+ATAHIH+FTNGGK K+ P+ S+ +R +
Sbjct: 1 MWFEILPGIGVMAVCLVIPGIATAHIHRFTNGGKEKRVAYYPYQWSLMQRDRRVSGV--N 58
Query: 188 RYHVTKGLENIE 153
RY+V+KGLENI+
Sbjct: 59 RYYVSKGLENID 70
>ref|XP_850490.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase MWFE subunit
(Complex I-MWFE) (CI-MWFE) [Canis familiaris].
Length = 70
Score = 75.1 bits (183), Expect = 2e-13
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGC--PFFISVEFDGKR*VHLWSY 189
MWFEILPGI VMA CL IPG+ATAHIH+FTNGGK K+ P+ S+ +R +
Sbjct: 1 MWFEILPGIGVMAVCLVIPGIATAHIHRFTNGGKEKRVAYYPYQWSLMQRDRRVSGV--N 58
Query: 188 RYHVTKGLENIE 153
Y+V+KGLENI+
Sbjct: 59 PYYVSKGLENID 70
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,002,873
Number of extensions: 1464503
Number of successful extensions: 6771
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6703
Number of HSP's successfully gapped: 4
Length of query: 531
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 423
Effective length of database: 15,274,216
Effective search space: 6460993368
Effective search space used: 6460993368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012990
(1594 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135386.1| PREDICTED: RING finger protein 113A-like [Su... 548 e-156
Alignment gi|XP_003135387.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 91 2e-18
>ref|XP_003135386.1| PREDICTED: RING finger protein 113A-like [Sus scrofa].
Length = 344
Score = 548 bits (1411), Expect = e-156
Identities = 265/306 (86%), Positives = 265/306 (86%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXTVVRPEKKR 855
MAEQLSPGKTTDQVCTFLF ICDQ TVVRPEKKR
Sbjct: 1 MAEQLSPGKTTDQVCTFLFKKPGRKGAAGRRKRPICDQESGDSSSSSDEGSTVVRPEKKR 60
Query: 856 ATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVGPEDMGATAV 1035
ATHNPMIQKTRGSGKQKAAYGDL LGVVYKSTRSAKPVGPEDMGATAV
Sbjct: 61 ATHNPMIQKTRGSGKQKAAYGDLSSEEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAV 120
Query: 1036 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 1215
YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR
Sbjct: 121 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 180
Query: 1216 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 1395
KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG
Sbjct: 181 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 240
Query: 1396 RYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVC 1575
RYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVC
Sbjct: 241 RYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVC 300
Query: 1576 DQQTNG 1593
DQQTNG
Sbjct: 301 DQQTNG 306
>ref|XP_003135387.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 1-like [Sus scrofa].
Length = 70
Score = 90.9 bits (224), Expect = 2e-18
Identities = 47/70 (67%), Positives = 50/70 (71%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGCPFFISVEFDGKR*VHLWSYRY 183
MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGK K+ F + RY
Sbjct: 1 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRRISGVNRY 60
Query: 182 HVTKGLENIE 153
HVTKGLENI+
Sbjct: 61 HVTKGLENID 70
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,770,967
Number of extensions: 908385
Number of successful extensions: 4257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4228
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 427
Effective length of database: 8,754,644
Effective search space: 3738232988
Effective search space used: 3738232988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012990
(1594 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705723.1| ring finger protein 113A1 [Mus musculus]. 513 e-145
Alignment gi|NP_079801.2| ring finger protein 113A2 [Mus musculus]. 509 e-144
Alignment gi|NP_062316.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 71 2e-12
>ref|NP_705723.1| ring finger protein 113A1 [Mus musculus].
Length = 341
Score = 513 bits (1320), Expect = e-145
Identities = 248/306 (81%), Positives = 257/306 (83%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXTVVRPEKKR 855
MAEQLSPG +T QVCTFLF +CD +VVRPEKK+
Sbjct: 1 MAEQLSPGNSTRQVCTFLFKKPGRKGAAGRRKRRLCDAGSGDSCSSSDEGSSVVRPEKKQ 60
Query: 856 ATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVGPEDMGATAV 1035
ATHNPMIQKTRGS KQKA YG L LGVVYKSTRSAKPVGPEDMGATAV
Sbjct: 61 ATHNPMIQKTRGSAKQKATYGGLSSEDENEPEG---LGVVYKSTRSAKPVGPEDMGATAV 117
Query: 1036 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 1215
YELDTEK+RDAQ+IFERSQKIQEELRGKEDDKIYRGINNYQKY+KPKDTSMGNASSGMVR
Sbjct: 118 YELDTEKDRDAQSIFERSQKIQEELRGKEDDKIYRGINNYQKYVKPKDTSMGNASSGMVR 177
Query: 1216 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 1395
KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG
Sbjct: 178 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 237
Query: 1396 RYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVC 1575
RYGVYEDENYEVGSD+EEIPFKCFICRQTF+NPVVTKCRHYFCE CALQHFRTT RCYVC
Sbjct: 238 RYGVYEDENYEVGSDDEEIPFKCFICRQTFQNPVVTKCRHYFCERCALQHFRTTSRCYVC 297
Query: 1576 DQQTNG 1593
DQQTNG
Sbjct: 298 DQQTNG 303
>ref|NP_079801.2| ring finger protein 113A2 [Mus musculus].
Length = 337
Score = 509 bits (1310), Expect = e-144
Identities = 247/306 (80%), Positives = 256/306 (83%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXTVVRPEKKR 855
MAEQ+S GK+ DQVCTFLF CD +VVRPEKKR
Sbjct: 1 MAEQVSQGKSEDQVCTFLFKKPGRKGSAGRRKRPACDPESGESGSSSDEGCSVVRPEKKR 60
Query: 856 ATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVGPEDMGATAV 1035
A HNPMIQKT GSGKQK AY DL LGVVYKSTRSAKPVGPEDMGATAV
Sbjct: 61 AAHNPMIQKTSGSGKQKGAYCDLSSEEEEKAGNES-LGVVYKSTRSAKPVGPEDMGATAV 119
Query: 1036 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 1215
YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR
Sbjct: 120 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 179
Query: 1216 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 1395
KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG
Sbjct: 180 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 239
Query: 1396 RYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVC 1575
RYGVYEDENYEV SD+EEIPFKCFICRQTF+NPVVTKC+HYFCE+CALQHFRTTPRCYVC
Sbjct: 240 RYGVYEDENYEVESDDEEIPFKCFICRQTFQNPVVTKCKHYFCETCALQHFRTTPRCYVC 299
Query: 1576 DQQTNG 1593
+QQT+G
Sbjct: 300 EQQTHG 305
>ref|NP_062316.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Mus
musculus].
Length = 70
Score = 71.2 bits (173), Expect = 2e-12
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGCPFFISVEFDGKR*VHLWSYRY 183
MWFEILPG+A+M CL IPG++TA+IHKFTNGGK K+ + RY
Sbjct: 1 MWFEILPGLAIMGVCLVIPGVSTAYIHKFTNGGKEKRVARVQYQWYLMERDRRISGVNRY 60
Query: 182 HVTKGLENIE 153
+V+KGLENI+
Sbjct: 61 YVSKGLENID 70
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,177,611
Number of extensions: 1203033
Number of successful extensions: 5231
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5185
Number of HSP's successfully gapped: 3
Length of query: 531
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 425
Effective length of database: 12,433,743
Effective search space: 5284340775
Effective search space used: 5284340775
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012990
(1594 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008909.1| RING finger protein 113A [Homo sapiens]. 527 e-149
Alignment gi|NP_849192.1| RING finger protein 113B [Homo sapiens]. 387 e-107
Alignment gi|NP_004532.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 74 4e-13
>ref|NP_008909.1| RING finger protein 113A [Homo sapiens].
Length = 343
Score = 527 bits (1357), Expect = e-149
Identities = 256/306 (83%), Positives = 259/306 (84%)
Frame = +1
Query: 676 MAEQLSPGKTTDQVCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXTVVRPEKKR 855
MAEQLSPGK DQVCTFLF CD TVVRPEKKR
Sbjct: 1 MAEQLSPGKAVDQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKR 60
Query: 856 ATHNPMIQKTRGSGKQKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVGPEDMGATAV 1035
THNPMIQKTR SGKQKAAYGDL LGVVYKSTRSAKPVGPEDMGATAV
Sbjct: 61 VTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPES-LGVVYKSTRSAKPVGPEDMGATAV 119
Query: 1036 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 1215
YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR
Sbjct: 120 YELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGMVR 179
Query: 1216 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 1395
KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG
Sbjct: 180 KGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG 239
Query: 1396 RYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPRCYVC 1575
RYGVYEDENYEVGSD+EEIPFKCFICRQ+F+NPVVTKCRHYFCESCALQHFRTTPRCYVC
Sbjct: 240 RYGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCYVC 299
Query: 1576 DQQTNG 1593
DQQTNG
Sbjct: 300 DQQTNG 305
>ref|NP_849192.1| RING finger protein 113B [Homo sapiens].
Length = 322
Score = 387 bits (995), Expect = e-107
Identities = 194/310 (62%), Positives = 220/310 (70%), Gaps = 4/310 (1%)
Frame = +1
Query: 676 MAEQLSPGKTTDQ---VCTFLFXXXXXXXXXXXXXXXICDQXXXXXXXXXXXXXTVVRPE 846
MA SPG+T DQ VCTFLF CD TV +P
Sbjct: 1 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP 60
Query: 847 KKRATHNPMIQKTRGSGK-QKAAYGDLXXXXXXXXXXXXXLGVVYKSTRSAKPVGPEDMG 1023
+ + + RG QKAA+GD L VVY+STRSAKPVGPEDMG
Sbjct: 61 R-------VAPRPRGLHSWQKAAHGD----RRGEEAAPESLDVVYRSTRSAKPVGPEDMG 109
Query: 1024 ATAVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASS 1203
ATA +E DTEKE I + SQ++QE LRG+E D IYRGI++Y +Y+KPKDTSMGN+SS
Sbjct: 110 ATADFEQDTEKEHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSS 169
Query: 1204 GMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERE 1383
GM RKGPIRAP HLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYK GW+IERE
Sbjct: 170 GMARKGPIRAPGHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERE 229
Query: 1384 LDEGRYGVYEDENYEVGSDEEEIPFKCFICRQTFRNPVVTKCRHYFCESCALQHFRTTPR 1563
L+EGRY + EDEN+EVGS+EEEIPF+CFICRQ F+NPVVTKCRHYFCESCAL+HFR TPR
Sbjct: 230 LEEGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPR 289
Query: 1564 CYVCDQQTNG 1593
CY+CDQ T G
Sbjct: 290 CYICDQPTGG 299
>ref|NP_004532.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Homo
sapiens].
Length = 70
Score = 73.9 bits (180), Expect = 4e-13
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = -3
Query: 362 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKGKKGCPFFISVEFDGKR*VHLWSYRY 183
MWFEILPG++VM CL IPG+ATA+IH+FTNGGK K+ F + RY
Sbjct: 1 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60
Query: 182 HVTKGLENIE 153
+V+KGLENI+
Sbjct: 61 YVSKGLENID 70
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,808,659
Number of extensions: 1431345
Number of successful extensions: 6702
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6648
Number of HSP's successfully gapped: 3
Length of query: 531
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 424
Effective length of database: 14,770,016
Effective search space: 6262486784
Effective search space used: 6262486784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012990
(1594 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 2621 0.0
Sscrofa_Chr14 452 e-124
Sscrofa_Chr09 109 5e-21
>Sscrofa_ChrX
|| Length = 144288218
Score = 2621 bits (1322), Expect = 0.0
Identities = 1331/1334 (99%)
Strand = Plus / Plus
Query: 260 ccttgcccccgttagtgaacttgtggatgtgagcagtggccattcccgggatgaacaagc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113391854 ccttgcccccgttagtgaacttgtggatgtgagcagtggccattcccgggatgaacaagc 113391913
Query: 320 acgcggccatgacggcgatcccggggagaatttcgaaccacatcgcgacgcggttaccaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113391914 acgcggccatgacggcgatcccggggagaatttcgaaccacatcgcgacgcggttaccaa 113391973
Query: 380 ggctaaatccttcttcccagcccctcaaaggtgacccgactttgattccttccccggaag 439
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113391974 ggataaacccttcttcccagcccctcaaaggtgacccgactttgattccttccccggaag 113392033
Query: 440 ctcggcgcggcgcgcgagtggggcggggccgcgtccgcctccggaggaagcgacggggcg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392034 ctcggcgcggcgcgcgagtggggcggggccgcgtccgcctccggaggaagcgacggggcg 113392093
Query: 500 cggcagggctcaagagtggtgcgcgccggggctctcgaacgcttgaactcccgcagccct 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392094 cggcagggctcaagagtggtgcgcgccggggctctcgaacgcttgaactcccgcagccct 113392153
Query: 560 ttttcaaccggcgatttttgtcccgactcgcggccgagcgcacgacgtgcagtgacgtga 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392154 ttttcaaccggcgatttttgtcccgactcgcggccgagcgcacgacgtgcagtgacgtga 113392213
Query: 620 agaagccccgcgccacctagcaggcctcagtcgttccggagctcaagactcttaagatgg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392214 agaagccccgcgccacctagcaggcctcagtcgttccggagctcaagactcttaagatgg 113392273
Query: 680 cagaacaactttctccgggaaagacaacggaccaggtgtgcactttccttttcaaaaagc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392274 cagaacaactttctccgggaaagacaacggaccaggtgtgcactttccttttcaaaaagc 113392333
Query: 740 ctgggcggaaaggggctgcaggccgccgaaagcgcccgatctgcgaccaagagtccggag 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392334 ctgggcggaaaggggctgcaggccgccgaaagcgcccgatctgcgaccaagagtccggag 113392393
Query: 800 acagcagcagcagcagtgacgaaggcagcactgtggttcgccctgaaaagaagcgggcga 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392394 acagcagcagcagcagtgacgaaggcagcactgtggttcgccctgaaaagaagcgggcga 113392453
Query: 860 cccacaatccgatgatacagaagacccgtggtagcggtaaacagaaggcggcttacggcg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392454 cccacaatccgatgatacagaagacccgtggtagcggtaaacagaaggcggcttacggcg 113392513
Query: 920 acctgagtagcgaagaggaggaagaggagaacgagcccgagagccttggcgtggtctaca 979
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113392514 acctgagtagcgaagaggaggaggaggagaacgagcccgagagccttggcgtggtctaca 113392573
Query: 980 agtccactcgctcggcgaaacccgttgggccagaggatatgggggcgactgctgtgtacg 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392574 agtccactcgctcggcgaaacccgttgggccagaggatatgggggcgactgctgtgtacg 113392633
Query: 1040 agctagacacagagaaggagcgtgacgcacaagccatctttgagcgcagccagaagatcc 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392634 agctagacacagagaaggagcgtgacgcacaagccatctttgagcgcagccagaagatcc 113392693
Query: 1100 aggaggagctgaggggcaaggaagatgacaagatctatcggggaatcaataattatcaga 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392694 aggaggagctgaggggcaaggaagatgacaagatctatcggggaatcaataattatcaga 113392753
Query: 1160 aatacatgaagcccaaggatacgtctatgggcaatgcttcctccgggatggtgaggaagg 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392754 aatacatgaagcccaaggatacgtctatgggcaatgcttcctccgggatggtgaggaagg 113392813
Query: 1220 gccccatccgagctcccgagcatctgcgtgccaccgtgcgctgggattaccagcctgaca 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392814 gccccatccgagctcccgagcatctgcgtgccaccgtgcgctgggattaccagcctgaca 113392873
Query: 1280 tttgcaaggactacaaggagactggcttttgcggcttcggagacagctgcaaattcctcc 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392874 tttgcaaggactacaaggagactggcttttgcggcttcggagacagctgcaaattcctcc 113392933
Query: 1340 atgaccgttcagattacaagcatgggtggcagatcgaacgtgagcttgatgagggtcgct 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392934 atgaccgttcagattacaagcatgggtggcagatcgaacgtgagcttgatgagggtcgct 113392993
Query: 1400 atggtgtctatgaggatgaaaactatgaagtgggaagtgatgaggaggaaataccattca 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392994 atggtgtctatgaggatgaaaactatgaagtgggaagtgatgaggaggaaataccattca 113393053
Query: 1460 agtgtttcatctgtcgccagaccttccgaaacccagttgtcaccaaatgcaggcattatt 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113393054 agtgtttcatctgtcgccagaccttccgaaacccagttgtcaccaaatgcaggcattatt 113393113
Query: 1520 tctgcgagagctgtgcactgcagcatttccgcaccaccccgcgctgctatgtctgtgacc 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113393114 tctgcgagagctgtgcactgcagcatttccgcaccaccccgcgctgctatgtctgtgacc 113393173
Query: 1580 agcagaccaatggc 1593
||||||||||||||
Sbjct: 113393174 agcagaccaatggc 113393187
Score = 155 bits (78), Expect = 9e-35
Identities = 125/138 (90%), Gaps = 2/138 (1%)
Strand = Plus / Plus
Query: 35 aaatttttattacatattacaaaatacactgcatg-tacctaagataacttataaccttc 93
|||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||||
Sbjct: 113388205 aaatttttattacatactacaaaatacactgcatgctacataagatacgttataaccttc 113388264
Query: 94 tagcaggggtagacgagcataattgagttattttt-atccatcagaaaggtgtttcctaa 152
|||||||||||||||||||||| |||||||||||| ||| ||||| || ||| ||||| |
Sbjct: 113388265 tagcaggggtagacgagcataactgagttatttttcatcaatcaggaaagtgcttcctta 113388324
Query: 153 ttcaatgttctccaaacc 170
|||||||||||||||||
Sbjct: 113388325 atcaatgttctccaaacc 113388342
Score = 147 bits (74), Expect = 2e-32
Identities = 87/90 (96%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 172 tttgtcacatggtaccgat-aactccagagatgcacctatctctttccatcaaattccac 230
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 113390353 tttgtcacatggtaacgattaactccagagatgcgcctatctctttccatcaaattccac 113390412
Query: 231 tgatatgaaaaatgggcaacccttttttcc 260
||||||||||||||||||||||||||||||
Sbjct: 113390413 tgatatgaaaaatgggcaacccttttttcc 113390442
>Sscrofa_Chr14
|| Length = 153851969
Score = 452 bits (228), Expect = e-124
Identities = 350/385 (90%), Gaps = 8/385 (2%)
Strand = Plus / Minus
Query: 35 aaatttttattacatattacaaaatacactgcatg-tacctaagataacttataaccttc 93
|||||||||||||||| |||||||||||||||||| ||| ||||| | ||||||||||
Sbjct: 63730136 aaatttttattacatactacaaaatacactgcatgctacataagacacggtataaccttc 63730077
Query: 94 tagcaggggtagacgagcataattgagttattttt-atccatcagaaaggtgtttcctaa 152
|||||||||||||||||||||| |||||||||||| ||| ||||| || ||| ||||| |
Sbjct: 63730076 tagcaggggtagacgagcataactgagttatttttcatcaatcaggaaagtgcttcctta 63730017
Query: 153 ttcaatgttctccaaaccttttgtcacatggtaccgat-aactccagagatgcacctatc 211
||||||||||||||||| ||||| |||||||| |||| |||||||||||||| |||
Sbjct: 63730016 atcaatgttctccaaaccctttgttacatggtaacgattaactccagagatgcgcct--- 63729960
Query: 212 tctttccatcaaattccactgatatgaaaaatgggcaacccttttttcccttgcccccgt 271
|||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 63729959 -ctttccatcagattccactgatgtgaaaaatgggcaacccttttttcc-ttgcccccgc 63729902
Query: 272 tagtgaacttgtggatgtgagcagtggccattcccgggatgaacaagcacgcggccatga 331
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 63729901 tagtgaacttgtggatgtgagcagtggccattccggggatgaacaagcacgtggccatga 63729842
Query: 332 cggcgatcccggggagaatttcgaaccacatcgcgacgcggttaccaaggctaaatcctt 391
|||||||||| |||||||| | ||||||||||||||||| ||||||||||||||| ||||
Sbjct: 63729841 cggcgatcccagggagaatgtggaaccacatcgcgacgcagttaccaaggctaaaccctt 63729782
Query: 392 cttcccagcccctcaaaggtgaccc 416
|||||||||||||||||||||||||
Sbjct: 63729781 cttcccagcccctcaaaggtgaccc 63729757
>Sscrofa_Chr09
|| Length = 153670197
Score = 109 bits (55), Expect = 5e-21
Identities = 146/174 (83%), Gaps = 3/174 (1%)
Strand = Plus / Plus
Query: 190 taactccagagatgcacctatctctttccatcaaattccactgatatgaaaaatgggcaa 249
|||||||||||||||| || |||| |||||||| |||| ||||||||||| |||||||||
Sbjct: 112610259 taactccagagatgcatctgtctccttccatcagattctactgatatgaataatgggcaa 112610318
Query: 250 cccttttttcccttgcccccgttagtgaacttgtggatgtgagcagtggccattcccggg 309
||| ||||| ||| ||||| |||||||||| |||||||| | |||||||||||| |
Sbjct: 112610319 ccccttttttcct-gccccagttagtgaacctgtggatgcacg--gtggccattcccaga 112610375
Query: 310 atgaacaagcacgcggccatgacggcgatcccggggagaatttcgaaccacatc 363
||||||| ||| || |||||||| | |||||| ||| ||| || |||||||||
Sbjct: 112610376 atgaacatgcatgcagccatgacagtgatccctaggacaatctctaaccacatc 112610429
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,239,859
Number of extensions: 400
Number of successful extensions: 400
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 5
Length of query: 1594
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1572
Effective length of database: 2,808,408,574
Effective search space: 4414818278328
Effective search space used: 4414818278328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)