Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012991
(756 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786988.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 124 7e-29
Alignment gi|XP_002700003.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 117 1e-26
Alignment gi|XP_001249375.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 117 1e-26
Alignment gi|XP_002690040.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 101 6e-22
Alignment gi|XP_001255205.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 101 6e-22
>ref|NP_786988.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Bos
taurus].
Length = 70
Score = 124 bits (312), Expect = 7e-29
Identities = 56/70 (80%), Positives = 63/70 (90%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFE+LPGIAVM CLFIPGMATA IH+F+NGGKEKRVAH+ YQW LMERDR +SGVNR
Sbjct: 1 MWFEVLPGIAVMGVCLFIPGMATARIHRFSNGGKEKRVAHYPYQWYLMERDRRVSGVNRS 60
Query: 281 HVTKGLENID 310
+V+KGLENID
Sbjct: 61 YVSKGLENID 70
>ref|XP_002700003.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 70
Score = 117 bits (292), Expect = 1e-26
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFE+LPGIAVM CLFIPGMAT IH+F+NGGKEKRVAH+ YQW LM RDR +SGVN
Sbjct: 1 MWFEVLPGIAVMGMCLFIPGMATTCIHRFSNGGKEKRVAHYPYQWYLMVRDRRVSGVNHS 60
Query: 281 HVTKGLENID 310
+V+KGLENID
Sbjct: 61 YVSKGLENID 70
>ref|XP_001249375.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 70
Score = 117 bits (292), Expect = 1e-26
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFE+LPGIAVM CLFIPGMAT IH+F+NGGKEKRVAH+ YQW LM RDR +SGVN
Sbjct: 1 MWFEVLPGIAVMGMCLFIPGMATTCIHRFSNGGKEKRVAHYPYQWYLMVRDRRVSGVNHS 60
Query: 281 HVTKGLENID 310
+V+KGLENID
Sbjct: 61 YVSKGLENID 70
>ref|XP_002690040.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 59
Score = 101 bits (252), Expect = 6e-22
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +2
Query: 134 MAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRYHVTKGLENID 310
M CLFIPGMATA IH+F+NGGKEKRVAH+ YQW LMERDR +SGVNR++V+ GLENID
Sbjct: 1 MGVCLFIPGMATARIHRFSNGGKEKRVAHYPYQWYLMERDRRVSGVNRFYVSMGLENID 59
>ref|XP_001255205.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 59
Score = 101 bits (252), Expect = 6e-22
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +2
Query: 134 MAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRYHVTKGLENID 310
M CLFIPGMATA IH+F+NGGKEKRVAH+ YQW LMERDR +SGVNR++V+ GLENID
Sbjct: 1 MGVCLFIPGMATARIHRFSNGGKEKRVAHYPYQWYLMERDRRVSGVNRFYVSMGLENID 59
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,653,233
Number of extensions: 690564
Number of successful extensions: 1574
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1574
Number of HSP's successfully gapped: 5
Length of query: 252
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 152
Effective length of database: 14,372,574
Effective search space: 2184631248
Effective search space used: 2184631248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-012991
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012991
(756 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538155.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 126 2e-29
Alignment gi|XP_850490.1| PREDICTED: similar to NADH-ubiquinone oxidoredu... 124 1e-28
>ref|XP_538155.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase MWFE subunit
(Complex I-MWFE) (CI-MWFE) [Canis familiaris].
Length = 70
Score = 126 bits (317), Expect = 2e-29
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFEILPGI VMA CL IPG+ATAHIH+FTNGGKEKRVA++ YQW+LM+RDR +SGVNRY
Sbjct: 1 MWFEILPGIGVMAVCLVIPGIATAHIHRFTNGGKEKRVAYYPYQWSLMQRDRRVSGVNRY 60
Query: 281 HVTKGLENID 310
+V+KGLENID
Sbjct: 61 YVSKGLENID 70
>ref|XP_850490.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase MWFE subunit
(Complex I-MWFE) (CI-MWFE) [Canis familiaris].
Length = 70
Score = 124 bits (310), Expect = 1e-28
Identities = 55/70 (78%), Positives = 64/70 (91%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFEILPGI VMA CL IPG+ATAHIH+FTNGGKEKRVA++ YQW+LM+RDR +SGVN Y
Sbjct: 1 MWFEILPGIGVMAVCLVIPGIATAHIHRFTNGGKEKRVAYYPYQWSLMQRDRRVSGVNPY 60
Query: 281 HVTKGLENID 310
+V+KGLENID
Sbjct: 61 YVSKGLENID 70
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,583,660
Number of extensions: 660890
Number of successful extensions: 1865
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1865
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 152
Effective length of database: 15,540,904
Effective search space: 2362217408
Effective search space used: 2362217408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012991
(756 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135387.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 147 5e-36
>ref|XP_003135387.2| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 1-like [Sus scrofa].
Length = 70
Score = 147 bits (372), Expect = 5e-36
Identities = 69/70 (98%), Positives = 69/70 (98%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDR ISGVNRY
Sbjct: 1 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRRISGVNRY 60
Query: 281 HVTKGLENID 310
HVTKGLENID
Sbjct: 61 HVTKGLENID 70
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,074,878
Number of extensions: 527997
Number of successful extensions: 1104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 155
Effective length of database: 8,928,923
Effective search space: 1383983065
Effective search space used: 1383983065
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012991
(756 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062316.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 121 5e-28
>ref|NP_062316.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Mus
musculus].
Length = 70
Score = 121 bits (304), Expect = 5e-28
Identities = 55/70 (78%), Positives = 62/70 (88%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFEILPG+A+M CL IPG++TA+IHKFTNGGKEKRVA YQW LMERDR ISGVNRY
Sbjct: 1 MWFEILPGLAIMGVCLVIPGVSTAYIHKFTNGGKEKRVARVQYQWYLMERDRRISGVNRY 60
Query: 281 HVTKGLENID 310
+V+KGLENID
Sbjct: 61 YVSKGLENID 70
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,041,815
Number of extensions: 538671
Number of successful extensions: 1397
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1397
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 153
Effective length of database: 12,643,995
Effective search space: 1934531235
Effective search space used: 1934531235
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012991
(756 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004532.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 124 7e-29
>ref|NP_004532.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Homo
sapiens].
Length = 70
Score = 124 bits (312), Expect = 7e-29
Identities = 55/70 (78%), Positives = 64/70 (91%)
Frame = +2
Query: 101 MWFEILPGIAVMAACLFIPGMATAHIHKFTNGGKEKRVAHFSYQWNLMERDRCISGVNRY 280
MWFEILPG++VM CL IPG+ATA+IH+FTNGGKEKRVAHF Y W+LMERDR ISGV+RY
Sbjct: 1 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY 60
Query: 281 HVTKGLENID 310
+V+KGLENID
Sbjct: 61 YVSKGLENID 70
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,967,132
Number of extensions: 640472
Number of successful extensions: 1675
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1674
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 152
Effective length of database: 15,000,764
Effective search space: 2280116128
Effective search space used: 2280116128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012991
(756 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 622 e-176
Sscrofa_ChrX 385 e-104
Sscrofa_Chr09 176 1e-41
>Sscrofa_Chr14
|| Length = 153851969
Score = 622 bits (314), Expect = e-176
Identities = 372/391 (95%), Gaps = 4/391 (1%)
Strand = Plus / Plus
Query: 47 gggtcacctttgaggggctgggaagaaggatttagccttggtaaccgcgtcgcgatgtgg 106
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 63729757 gggtcacctttgaggggctgggaagaagggtttagccttggtaactgcgtcgcgatgtgg 63729816
Query: 107 ttcgaaattctccccgggatcgccgtcatggccgcgtgcttgttcatcccgggaatggcc 166
||| | |||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 63729817 ttccacattctccctgggatcgccgtcatggccacgtgcttgttcatccccggaatggcc 63729876
Query: 167 actgctcacatccacaagttcactaacgggggcaaggaaaaaagggttgcccatttttca 226
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 63729877 actgctcacatccacaagttcactagcgggggcaaggaaaaaagggttgcccatttttca 63729936
Query: 227 tatcagtggaatttgatggaaagagataggtgcatctctggagttaatcgttaccatgtg 286
||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 63729937 catcagtggaatctgatggaaag----aggcgcatctctggagttaatcgttaccatgta 63729992
Query: 287 acaaagggtttggagaacattgattaaggaagcactttcctgattgatgaaaaataactc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63729993 acaaagggtttggagaacattgattaaggaagcactttcctgattgatgaaaaataactc 63730052
Query: 347 agttatgctcgtctacccctgctagaaggttataacgtatcttatgtagcatgcagtgta 406
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 63730053 agttatgctcgtctacccctgctagaaggttataccgtgtcttatgtagcatgcagtgta 63730112
Query: 407 ttttgtagtatgtaataaaaattttaaaagt 437
||||||||||||||||||||||||| |||||
Sbjct: 63730113 ttttgtagtatgtaataaaaatttttaaagt 63730143
>Sscrofa_ChrX
|| Length = 144288218
Score = 385 bits (194), Expect = e-104
Identities = 200/202 (99%)
Strand = Plus / Minus
Query: 2 cccactcgcgcgccgcgccgagcttccggggaaggaatcaaagtcgggtcacctttgagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113392055 cccactcgcgcgccgcgccgagcttccggggaaggaatcaaagtcgggtcacctttgagg 113391996
Query: 62 ggctgggaagaaggatttagccttggtaaccgcgtcgcgatgtggttcgaaattctcccc 121
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 113391995 ggctgggaagaagggtttatccttggtaaccgcgtcgcgatgtggttcgaaattctcccc 113391936
Query: 122 gggatcgccgtcatggccgcgtgcttgttcatcccgggaatggccactgctcacatccac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113391935 gggatcgccgtcatggccgcgtgcttgttcatcccgggaatggccactgctcacatccac 113391876
Query: 182 aagttcactaacgggggcaagg 203
||||||||||||||||||||||
Sbjct: 113391875 aagttcactaacgggggcaagg 113391854
Score = 291 bits (147), Expect = 3e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 291 agggtttggagaacattgattaaggaagcactttcctgattgatgaaaaataactcagtt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113388344 agggtttggagaacattgattaaggaagcactttcctgattgatgaaaaataactcagtt 113388285
Query: 351 atgctcgtctacccctgctagaaggttataacgtatcttatgtagcatgcagtgtatttt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113388284 atgctcgtctacccctgctagaaggttataacgtatcttatgtagcatgcagtgtatttt 113388225
Query: 411 gtagtatgtaataaaaattttaaaagt 437
|||||||||||||||||||||||||||
Sbjct: 113388224 gtagtatgtaataaaaattttaaaagt 113388198
Score = 176 bits (89), Expect = 1e-41
Identities = 92/93 (98%)
Strand = Plus / Minus
Query: 201 aggaaaaaagggttgcccatttttcatatcagtggaatttgatggaaagagataggtgca 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 113390443 aggaaaaaagggttgcccatttttcatatcagtggaatttgatggaaagagataggcgca 113390384
Query: 261 tctctggagttaatcgttaccatgtgacaaagg 293
|||||||||||||||||||||||||||||||||
Sbjct: 113390383 tctctggagttaatcgttaccatgtgacaaagg 113390351
>Sscrofa_Chr09
|| Length = 153670197
Score = 176 bits (89), Expect = 1e-41
Identities = 270/328 (82%), Gaps = 3/328 (0%)
Strand = Plus / Minus
Query: 100 gatgtggttcgaaattctccccgggatcgccgtcatggccgcgtgcttgttcatcccggg 159
||||||||| || ||| ||| |||||| | |||||||| || ||| ||||||| | |||
Sbjct: 112610429 gatgtggttagagattgtcctagggatcactgtcatggctgcatgcatgttcattctggg 112610370
Query: 160 aatggccactgctcacatccacaagttcactaacgggggcaaggaaaaaagggttgccca 219
||||||||| | |||||||| |||||||||| |||||| | ||||| ||||||||||
Sbjct: 112610369 aatggccac--cgtgcatccacaggttcactaactggggcaggaaaaaaggggttgccca 112610312
Query: 220 tttttcatatcagtggaatttgatggaaagagataggtgcatctctggagttaatcgtt- 278
|| ||||||||||| |||| |||||||| |||| || |||||||||||||||||| |||
Sbjct: 112610311 ttattcatatcagtagaatctgatggaaggagacagatgcatctctggagttaattgtta 112610252
Query: 279 accatgtgacaaagggtttggagaacattgattaaggaagcactttcctgattgatgaaa 338
|| ||||| ||||||||| || ||||||| ||||||||| ||||||||||||| |
Sbjct: 112610251 actatgtgtcaaagggttcaaaggacattgaggaaggaagcattttcctgattgatttta 112610192
Query: 339 aataactcagttatgctcgtctacccctgctagaaggttataacgtatcttatgtagcat 398
|| |||||||||||| || ||| || ||||| ||||||||| || | ||||| ||||
Sbjct: 112610191 aaaaactcagttatgttcatctccctctgctggaaggttatgcagtgtattatgcagcac 112610132
Query: 399 gcagtgtattttgtagtatgtaataaaa 426
||| | ||||||||||| ||||||||||
Sbjct: 112610131 gcaatatattttgtagtgtgtaataaaa 112610104
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,184,661
Number of extensions: 1055
Number of successful extensions: 1055
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1052
Number of HSP's successfully gapped: 5
Length of query: 756
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 735
Effective length of database: 2,808,413,156
Effective search space: 2064183669660
Effective search space used: 2064183669660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)