Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012994
(1808 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094577.1| phenylalanyl-tRNA synthetase alpha chain [Bo... 961 0.0
>ref|NP_001094577.1| phenylalanyl-tRNA synthetase alpha chain [Bos taurus].
Length = 508
Score = 961 bits (2484), Expect = 0.0
Identities = 473/508 (93%), Positives = 487/508 (95%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLRRLEAADGGLDSAE+A +LG+EHQ VVGAVKSLQ LG+IIE ELRSTKR
Sbjct: 1 MADGPVAEVLLRRLEAADGGLDSAELATELGVEHQTVVGAVKSLQALGQIIETELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIA+EGSHEARVFRS+PPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAQEGSHEARVFRSIPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLV+GGQAEKLGEKERSELRKRKLLTE TLKTYWVSKGSA
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLTEATLKTYWVSKGSA 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHG+LP+SGHLHPLLKVR+QFRQIFLE
Sbjct: 181 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGVLPDSGHLHPLLKVRSQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDP QA QLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPAQAQQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 1118
KY WKLDEARKNLLRTHTT+ASARALYRLAQKKPFTPAKYFSIDRVFRNE
Sbjct: 301 SQGGYGSQGYKYTWKLDEARKNLLRTHTTAASARALYRLAQKKPFTPAKYFSIDRVFRNE 360
Query: 1119 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 1298
TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSME+F
Sbjct: 361 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEIF 420
Query: 1299 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 1478
SYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
Sbjct: 421 SYHQGLKKWVEVGNSGIFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 480
Query: 1479 KVNLQMVYDSPLCRLDTEQGPPPTQEAA 1562
KVNLQMVYDSPLCRLD E+GPP TQEAA
Sbjct: 481 KVNLQMVYDSPLCRLDAERGPPSTQEAA 508
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,465,804
Number of extensions: 2310858
Number of successful extensions: 12085
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11876
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 494
Effective length of database: 14,107,870
Effective search space: 6969287780
Effective search space used: 6969287780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012994
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012994
(1808 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533900.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 950 0.0
Alignment gi|XP_867391.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 942 0.0
Alignment gi|XP_867401.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 867 0.0
Alignment gi|XP_867370.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 860 0.0
Alignment gi|XP_867337.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 850 0.0
Alignment gi|XP_867359.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 847 0.0
Alignment gi|XP_867348.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 844 0.0
Alignment gi|XP_867383.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 806 0.0
>ref|XP_533900.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 1 [Canis familiaris].
Length = 508
Score = 950 bits (2455), Expect = 0.0
Identities = 470/508 (92%), Positives = 485/508 (95%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 1118
KYNWKL+EARKN+LRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE
Sbjct: 301 SQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 360
Query: 1119 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 1298
TLDATHLAEFHQIEGVVADHGLTLGHLMG+LREFFTKLGITQLRFKPAYNPYTEPSMEVF
Sbjct: 361 TLDATHLAEFHQIEGVVADHGLTLGHLMGILREFFTKLGITQLRFKPAYNPYTEPSMEVF 420
Query: 1299 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 1478
SYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
Sbjct: 421 SYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 480
Query: 1479 KVNLQMVYDSPLCRLDTEQGPPPTQEAA 1562
KVNLQMVYDSPLCRLD E GPP TQ AA
Sbjct: 481 KVNLQMVYDSPLCRLDAEPGPPRTQGAA 508
>ref|XP_867391.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 7 [Canis familiaris].
Length = 516
Score = 942 bits (2436), Expect = 0.0
Identities = 470/516 (91%), Positives = 485/516 (93%), Gaps = 8/516 (1%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQK--------KPFTPAKYFS 1094
KYNWKL+EARKN+LRTHTTSASARALYRLAQK KPFTPAKYFS
Sbjct: 301 SQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKAWPTCHPQKPFTPAKYFS 360
Query: 1095 IDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPY 1274
IDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMG+LREFFTKLGITQLRFKPAYNPY
Sbjct: 361 IDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGILREFFTKLGITQLRFKPAYNPY 420
Query: 1275 TEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGIN 1454
TEPSMEVFSYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGIN
Sbjct: 421 TEPSMEVFSYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGIN 480
Query: 1455 NIRELVGHKVNLQMVYDSPLCRLDTEQGPPPTQEAA 1562
NIRELVGHKVNLQMVYDSPLCRLD E GPP TQ AA
Sbjct: 481 NIRELVGHKVNLQMVYDSPLCRLDAEPGPPRTQGAA 516
>ref|XP_867401.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 8 [Canis familiaris].
Length = 463
Score = 867 bits (2241), Expect = 0.0
Identities = 429/463 (92%), Positives = 444/463 (95%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 1118
KYNWKL+EARKN+LRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE
Sbjct: 301 SQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 360
Query: 1119 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 1298
TLDATHLAEFHQIEGVVADHGLTLGHLMG+LREFFTKLGITQLRFKPAYNPYTEPSMEVF
Sbjct: 361 TLDATHLAEFHQIEGVVADHGLTLGHLMGILREFFTKLGITQLRFKPAYNPYTEPSMEVF 420
Query: 1299 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLER 1427
SYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLER
Sbjct: 421 SYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLER 463
>ref|XP_867370.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 5 [Canis familiaris].
Length = 471
Score = 860 bits (2222), Expect = 0.0
Identities = 429/471 (91%), Positives = 444/471 (94%), Gaps = 8/471 (1%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQK--------KPFTPAKYFS 1094
KYNWKL+EARKN+LRTHTTSASARALYRLAQK KPFTPAKYFS
Sbjct: 301 SQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKAWPTCHPQKPFTPAKYFS 360
Query: 1095 IDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPY 1274
IDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMG+LREFFTKLGITQLRFKPAYNPY
Sbjct: 361 IDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGILREFFTKLGITQLRFKPAYNPY 420
Query: 1275 TEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLER 1427
TEPSMEVFSYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLER
Sbjct: 421 TEPSMEVFSYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLER 471
>ref|XP_867337.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 2 [Canis familiaris].
Length = 464
Score = 850 bits (2195), Expect = 0.0
Identities = 424/464 (91%), Positives = 440/464 (94%), Gaps = 1/464 (0%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFT-PAKYFSIDRVFRN 1115
KYNWKL+EARKN+LRTHTTSASARALYRLAQK + AKYFSIDRVFRN
Sbjct: 301 SQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKVQLSLGAKYFSIDRVFRN 360
Query: 1116 ETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEV 1295
ETLDATHLAEFHQIEGVVADHGLTLGHLMG+LREFFTKLGITQLRFKPAYNPYTEPSMEV
Sbjct: 361 ETLDATHLAEFHQIEGVVADHGLTLGHLMGILREFFTKLGITQLRFKPAYNPYTEPSMEV 420
Query: 1296 FSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLER 1427
FSYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLER
Sbjct: 421 FSYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLER 464
>ref|XP_867359.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 4 [Canis familiaris].
Length = 469
Score = 847 bits (2189), Expect = 0.0
Identities = 425/469 (90%), Positives = 440/469 (93%), Gaps = 6/469 (1%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRD----PPQALQ--LPMDYVH 920
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLR P + LPMDYVH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRGGWNWPRHQREGFLPMDYVH 300
Query: 921 RVKRTHXXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSID 1100
RVKRTH KYNWKL+EARKN+LRTHTTSASARALYRLAQKKPFTPAKYFSID
Sbjct: 301 RVKRTHSQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKKPFTPAKYFSID 360
Query: 1101 RVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTE 1280
RVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMG+LREFFTKLGITQLRFKPAYNPYTE
Sbjct: 361 RVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGILREFFTKLGITQLRFKPAYNPYTE 420
Query: 1281 PSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLER 1427
PSMEVFSYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLER
Sbjct: 421 PSMEVFSYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLER 469
>ref|XP_867348.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 3 [Canis familiaris].
Length = 474
Score = 844 bits (2181), Expect = 0.0
Identities = 425/474 (89%), Positives = 441/474 (93%), Gaps = 11/474 (2%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLR---DPPQALQLPMDYVHRVK 929
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLR + P+ LPMDYVHRVK
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRGGWNWPRQDSLPMDYVHRVK 300
Query: 930 RTHXXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQK--------KPFTPAK 1085
RTH KYNWKL+EARKN+LRTHTTSASARALYRLAQK KPFTPAK
Sbjct: 301 RTHSQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKAWPTCHPQKPFTPAK 360
Query: 1086 YFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAY 1265
YFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMG+LREFFTKLGITQLRFKPAY
Sbjct: 361 YFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGILREFFTKLGITQLRFKPAY 420
Query: 1266 NPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLER 1427
NPYTEPSMEVFSYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLER
Sbjct: 421 NPYTEPSMEVFSYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLER 474
>ref|XP_867383.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase alpha chain
(Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
isoform 6 [Canis familiaris].
Length = 439
Score = 806 bits (2083), Expect = 0.0
Identities = 406/463 (87%), Positives = 420/463 (90%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPV EVLLR+LEAADGGLDSAE+AA+LG++HQAVVGAVKSLQ LGEIIEAELRSTKR
Sbjct: 1 MADGPVAEVLLRQLEAADGGLDSAELAAELGVDHQAVVGAVKSLQALGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVF S+P EGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFHSIPREGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGS
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGST 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FST+ISKQETELSPEMISSGSWRDRPFKPYNF A G+LP+SGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTNISKQETELSPEMISSGSWRDRPFKPYNFLARGVLPDSGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 1118
KYNWKL+EARKN+LRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE
Sbjct: 301 SQGGYGSQGYKYNWKLEEARKNILRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 360
Query: 1119 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 1298
TLDATHLAEFHQIE GITQLRFKPAYNPYTEPSMEVF
Sbjct: 361 TLDATHLAEFHQIE------------------------GITQLRFKPAYNPYTEPSMEVF 396
Query: 1299 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLER 1427
SYHQGLKKWVEVGNSG+FRPEMLLPMGLPENVSVIAWGLSLER
Sbjct: 397 SYHQGLKKWVEVGNSGLFRPEMLLPMGLPENVSVIAWGLSLER 439
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,684,024
Number of extensions: 2380172
Number of successful extensions: 12510
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 12351
Number of HSP's successfully gapped: 8
Length of query: 602
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 493
Effective length of database: 15,240,880
Effective search space: 7513753840
Effective search space used: 7513753840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012994
(1808 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123385.1| PREDICTED: LOW QUALITY PROTEIN: phenylalanyl... 999 0.0
>ref|XP_003123385.1| PREDICTED: LOW QUALITY PROTEIN: phenylalanyl-tRNA synthetase alpha
chain-like [Sus scrofa].
Length = 508
Score = 999 bits (2584), Expect = 0.0
Identities = 498/508 (98%), Positives = 498/508 (98%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR
Sbjct: 1 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA
Sbjct: 121 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE
Sbjct: 181 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH
Sbjct: 241 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 1118
KYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE
Sbjct: 301 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 360
Query: 1119 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 1298
TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
Sbjct: 361 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 420
Query: 1299 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 1478
SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
Sbjct: 421 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 480
Query: 1479 KVNLQMVYDSPLCRLDTEQGPPPTQEAA 1562
KVNLQMVYDSPLCRLDTEQGPPPTQEAA
Sbjct: 481 KVNLQMVYDSPLCRLDTEQGPPPTQEAA 508
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,201,164
Number of extensions: 1500150
Number of successful extensions: 7865
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7740
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 497
Effective length of database: 8,729,747
Effective search space: 4338684259
Effective search space used: 4338684259
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012994
(1808 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079924.2| phenylalanyl-tRNA synthetase alpha chain [Mus m... 914 0.0
Alignment gi|NP_077236.1| phenylalanyl-tRNA synthetase, mitochondrial iso... 59 1e-08
>ref|NP_079924.2| phenylalanyl-tRNA synthetase alpha chain [Mus musculus].
Length = 508
Score = 914 bits (2362), Expect = 0.0
Identities = 453/508 (89%), Positives = 472/508 (92%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MAD PV E+LLRRLE ADGGLDSAE+A QLG+EHQAVVGAVKSLQ LGE+IEAELRSTK
Sbjct: 1 MADNPVLELLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKC 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELT EGEEIAREGSHEARVFRS+P EGL QSELM LPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMHLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDS+EDEVQ+RLQLVQ GQAEKL EKER+ELRKRKLLTEV LKTYWVSKG A
Sbjct: 121 DGPRVFRVVDSIEDEVQKRLQLVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKA 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FSTS+SKQE ELSPEMISSGSWRDRPFKPYNFSA G+LP+SGHLHPLLKVR+QFRQIFLE
Sbjct: 181 FSTSVSKQEAELSPEMISSGSWRDRPFKPYNFSARGVLPDSGHLHPLLKVRSQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPM YV RVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMGYVQRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 1118
KY WKL+EARKNLLRTHTT+ASARALY+LAQKKPFTPAKYFSIDRVFRNE
Sbjct: 301 SQGGYGSQGYKYTWKLEEARKNLLRTHTTAASARALYQLAQKKPFTPAKYFSIDRVFRNE 360
Query: 1119 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 1298
TLDATHLAEFHQIEGV+ADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
Sbjct: 361 TLDATHLAEFHQIEGVIADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 420
Query: 1299 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 1478
SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
Sbjct: 421 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 480
Query: 1479 KVNLQMVYDSPLCRLDTEQGPPPTQEAA 1562
KVNLQMVYDSP+CRLD E TQEAA
Sbjct: 481 KVNLQMVYDSPVCRLDIEPRSSKTQEAA 508
>ref|NP_077236.1| phenylalanyl-tRNA synthetase, mitochondrial isoform 1 [Mus musculus].
Length = 451
Score = 59.3 bits (142), Expect = 1e-08
Identities = 66/296 (22%), Positives = 112/296 (37%), Gaps = 45/296 (15%)
Frame = +3
Query: 711 HPLLKVRTQFRQIFLEMGFTEMPTDNY--------IESSFWNFDALFQPQQHPARDQHDT 866
HPL ++ + ++ F + T + + +++ NFD+L P HP+R + D
Sbjct: 84 HPLWLIKERVKEHFYQQYMVRSRTPLFSVYDQLPPVVTTWQNFDSLLIPADHPSRKKGDN 143
Query: 867 FFLRDPPQALQLPMDYVHRVKRTHXXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARAL 1046
++L R ++LR HT++ L
Sbjct: 144 YYLN---------------------------------------RAHMLRAHTSAHQWDLL 164
Query: 1047 YRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGV--VADHGLTLG--------- 1193
+ + + V+R + +D H FHQ+EGV + H L G
Sbjct: 165 HAGLNA-------FLVVGDVYRRDQIDCQHYPVFHQLEGVRLFSKHELFAGVKDGESLQL 217
Query: 1194 -------------HLMGVLR--EFFTKLGITQL-----------RFKPAYNPYTEPSMEV 1295
H M ++ EF K +T+L R+ Y P+T PS E+
Sbjct: 218 FEEGSRSAHKQETHTMEAVKLVEFDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEM 277
Query: 1296 FSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIR 1463
+G +W+EV GV +++ G + + A+GL LER M+ Y I +IR
Sbjct: 278 EINFRG--EWLEVLGCGVMEQQLVNSAGAQDRIG-WAFGLGLERLAMVLYDIPDIR 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,653,734
Number of extensions: 1897970
Number of successful extensions: 9177
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8986
Number of HSP's successfully gapped: 3
Length of query: 602
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 495
Effective length of database: 12,403,707
Effective search space: 6139834965
Effective search space used: 6139834965
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012994
(1808 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004452.1| phenylalanyl-tRNA synthetase alpha chain [Homo ... 952 0.0
Alignment gi|NP_006558.1| phenylalanyl-tRNA synthetase, mitochondrial pre... 57 4e-08
>ref|NP_004452.1| phenylalanyl-tRNA synthetase alpha chain [Homo sapiens].
Length = 508
Score = 952 bits (2462), Expect = 0.0
Identities = 471/508 (92%), Positives = 485/508 (95%)
Frame = +3
Query: 39 MADGPVPEVLLRRLEAADGGLDSAEVAAQLGLEHQAVVGAVKSLQTLGEIIEAELRSTKR 218
MADG V E+LLRRLEA+DGGLDSAE+AA+LG+EHQAVVGAVKSLQ LGE+IEAELRSTK
Sbjct: 1 MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKH 60
Query: 219 WELTAEGEEIAREGSHEARVFRSVPPEGLPQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 398
WELTAEGEEIAREGSHEARVFRS+PPEGL QSELMRLPSGKVGFSKAMSNKWIRVDKSAA
Sbjct: 61 WELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA 120
Query: 399 DGPRVFRVVDSVEDEVQRRLQLVQGGQAEKLGEKERSELRKRKLLTEVTLKTYWVSKGSA 578
DGPRVFRVVDS+EDEVQRRLQLV+GGQAEKLGEKERSELRKRKLL EVTLKTYWVSKGSA
Sbjct: 121 DGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSA 180
Query: 579 FSTSISKQETELSPEMISSGSWRDRPFKPYNFSAHGILPESGHLHPLLKVRTQFRQIFLE 758
FSTSISKQETELSPEMISSGSWRDRPFKPYNF AHG+LP+SGHLHPLLKVR+QFRQIFLE
Sbjct: 181 FSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLE 240
Query: 759 MGFTEMPTDNYIESSFWNFDALFQPQQHPARDQHDTFFLRDPPQALQLPMDYVHRVKRTH 938
MGFTEMPTDN+IESSFWNFDALFQPQQHPARDQHDTFFLRDP +ALQLPMDYV RVKRTH
Sbjct: 241 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTH 300
Query: 939 XXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPAKYFSIDRVFRNE 1118
KYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTP KYFSIDRVFRNE
Sbjct: 301 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE 360
Query: 1119 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 1298
TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
Sbjct: 361 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF 420
Query: 1299 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 1478
SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
Sbjct: 421 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH 480
Query: 1479 KVNLQMVYDSPLCRLDTEQGPPPTQEAA 1562
KVNLQMVYDSPLCRLD E PPPTQEAA
Sbjct: 481 KVNLQMVYDSPLCRLDAEPRPPPTQEAA 508
>ref|NP_006558.1| phenylalanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 451
Score = 57.4 bits (137), Expect = 4e-08
Identities = 70/296 (23%), Positives = 113/296 (38%), Gaps = 45/296 (15%)
Frame = +3
Query: 711 HPLLKVRTQFRQIFLEMGFTEMPT------DNY--IESSFWNFDALFQPQQHPARDQHDT 866
HPL ++ + ++ F + T DN + +++ NFD+L P HP+R + D
Sbjct: 84 HPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDN 143
Query: 867 FFLRDPPQALQLPMDYVHRVKRTHXXXXXXXXXXKYNWKLDEARKNLLRTHTTSASARAL 1046
++L RTH +LR HT++ L
Sbjct: 144 YYLN-----------------RTH----------------------MLRAHTSAHQWDLL 164
Query: 1047 YRLAQKKPFTPAKYFSIDRVFRNETLDATHLAEFHQIEGV--VADHGLTLG--------- 1193
+ + + V+R + +D+ H FHQ+E V + H L G
Sbjct: 165 HAGLDA-------FLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQL 217
Query: 1194 -------------HLMGVLR--EFFTKLGITQL-----------RFKPAYNPYTEPSMEV 1295
H M ++ EF K +T+L R+ Y P+T PS E+
Sbjct: 218 FEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEM 277
Query: 1296 FSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIR 1463
G +W+EV GV +++ G + + A+GL LER MI Y I +IR
Sbjct: 278 EINFHG--EWLEVLGCGVMEQQLVNSAGAQDRIG-WAFGLGLERLAMILYDIPDIR 330
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,901,773
Number of extensions: 2310991
Number of successful extensions: 11751
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11529
Number of HSP's successfully gapped: 3
Length of query: 602
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 494
Effective length of database: 14,737,052
Effective search space: 7280103688
Effective search space used: 7280103688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012994
(1808 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 759 0.0
Sscrofa_Chr03 78 2e-11
>Sscrofa_Chr02
|| Length = 162569375
Score = 759 bits (383), Expect = 0.0
Identities = 383/383 (100%)
Strand = Plus / Minus
Query: 1426 gcccgacgatgatcaaatatggcatcaacaacatccgagagctggtgggccacaaggtga 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66271931 gcccgacgatgatcaaatatggcatcaacaacatccgagagctggtgggccacaaggtga 66271872
Query: 1486 acctgcagatggtgtacgatagtcctctgtgccgcctggacactgaacaggggccccctc 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66271871 acctgcagatggtgtacgatagtcctctgtgccgcctggacactgaacaggggccccctc 66271812
Query: 1546 caacacaggaggccgcatgacatgagccaccctggataggccgccttccccgacaccctg 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66271811 caacacaggaggccgcatgacatgagccaccctggataggccgccttccccgacaccctg 66271752
Query: 1606 ctgccccttgcatccctgccagtgacccccttgtacttacgaggcctctgtgaggccatc 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66271751 ctgccccttgcatccctgccagtgacccccttgtacttacgaggcctctgtgaggccatc 66271692
Query: 1666 cccctgcccctggtatctccttttccccgctggccccagggtcaggggagtgggtagcag 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66271691 cccctgcccctggtatctccttttccccgctggccccagggtcaggggagtgggtagcag 66271632
Query: 1726 gttcgttctgttgtccatctgtgagggtgggccttggggagccctgctggccagccgctg 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66271631 gttcgttctgttgtccatctgtgagggtgggccttggggagccctgctggccagccgctg 66271572
Query: 1786 gctaataaagtgggcagttgccc 1808
|||||||||||||||||||||||
Sbjct: 66271571 gctaataaagtgggcagttgccc 66271549
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 11 ggacacgccgtgcgcactgggagcagccatggccgacggtccggtgccggaggtgttgct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66280448 ggacacgccgtgcgcactgggagcagccatggccgacggtccggtgccggaggtgttgct 66280389
Query: 71 gcggcggctggaggcggctgatggcggcctggacagcgcagaggtggcagcccagctggg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66280388 gcggcggctggaggcggctgatggcggcctggacagcgcagaggtggcagcccagctggg 66280329
Query: 131 tttagaacaccaggctgtggtgggtgccgtgaagagcctgcagacactgggcgag 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66280328 tttagaacaccaggctgtggtgggtgccgtgaagagcctgcagacactgggcgag 66280274
Score = 341 bits (172), Expect = 8e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 1063 agaagcccttcacaccagccaagtacttctccatcgatcgtgtgttccggaacgagacct 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273643 agaagcccttcacaccagccaagtacttctccatcgatcgtgtgttccggaacgagacct 66273584
Query: 1123 tggatgccacgcacctggctgagttccaccagatcgagggcgttgtggctgatcacggcc 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273583 tggatgccacgcacctggctgagttccaccagatcgagggcgttgtggctgatcacggcc 66273524
Query: 1183 tcaccttgggccacctcatgggcgtcctgcgggagttcttcaccaagctggg 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273523 tcaccttgggccacctcatgggcgtcctgcgggagttcttcaccaagctggg 66273472
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 184 agattatcgaggctgagctgcgctccaccaagcgctgggagcttactgctgagggcgagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277509 agattatcgaggctgagctgcgctccaccaagcgctgggagcttactgctgagggcgagg 66277450
Query: 244 agattgcccgggagggcagccatgaggcccgggtgtttcgcagtgtccccccagagggcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277449 agattgcccgggagggcagccatgaggcccgggtgtttcgcagtgtccccccagagggcc 66277390
Query: 304 tgccccagagcgagctcatg 323
||||||||||||||||||||
Sbjct: 66277389 tgccccagagcgagctcatg 66277370
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 633 agtggctcctggcgggaccggcccttcaagccctacaatttctcggcccatggtatcctc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275880 agtggctcctggcgggaccggcccttcaagccctacaatttctcggcccatggtatcctc 66275821
Query: 693 cctgagagcggccacctgcaccccctcctcaaggtccgcacccagttccggcagatcttc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275820 cctgagagcggccacctgcaccccctcctcaaggtccgcacccagttccggcagatcttc 66275761
Query: 753 ctggagatggggt 765
|||||||||||||
Sbjct: 66275760 ctggagatggggt 66275748
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 422 ggtggacagcgtggaggatgaggtacagcggcggctccagctggtccagggtgggcaggc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277096 ggtggacagcgtggaggatgaggtacagcggcggctccagctggtccagggtgggcaggc 66277037
Query: 482 cgagaagctgggagagaaggagaggagcgagctcaggaagaggaagctgctgactgaagt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277036 cgagaagctgggagagaaggagaggagcgagctcaggaagaggaagctgctgactgaagt 66276977
Query: 542 g 542
|
Sbjct: 66276976 g 66276976
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 1310 aggcctgaagaagtgggtagaggttggaaactccggggtcttccgccccgagatgctgct 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273159 aggcctgaagaagtgggtagaggttggaaactccggggtcttccgccccgagatgctgct 66273100
Query: 1370 gcccatggggctccccgagaacgtgtccgtcattgcctggggcctctccttagagcg 1426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273099 gcccatggggctccccgagaacgtgtccgtcattgcctggggcctctccttagagcg 66273043
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 763 ggttcactgagatgccgaccgacaattacattgagagctccttctggaattttgatgcgc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275674 ggttcactgagatgccgaccgacaattacattgagagctccttctggaattttgatgcgc 66275615
Query: 823 tcttccagccccagcagcacccagcacgtgaccagcatgacactttctttctgcgag 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66275614 tcttccagccccagcagcacccagcacgtgaccagcatgacactttctttctgcgag 66275558
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 323 gcgactgccgagtggcaaggtgggcttcagcaaggccatgtccaacaagtggatccgagt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277271 gcgactgccgagtggcaaggtgggcttcagcaaggccatgtccaacaagtggatccgagt 66277212
Query: 383 ggacaagagtgctgctgatgggccccgggtgttccgagtggtg 425
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66277211 ggacaagagtgctgctgatgggccccgggtgttccgagtggtg 66277169
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 964 ggtacaagtacaactggaaactggacgaagctcggaaaaacctgctccgcacgcacacca 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273836 ggtacaagtacaactggaaactggacgaagctcggaaaaacctgctccgcacgcacacca 66273777
Query: 1024 cgtcagccagtgcccgcgccctctaccgcctggcgcagaag 1064
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273776 cgtcagccagtgcccgcgccctctaccgcctggcgcagaag 66273736
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 542 gaccctgaagacctactgggtgagcaaaggcagtgccttcagcaccagcatctccaagca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66276059 gaccctgaagacctactgggtgagcaaaggcagtgccttcagcaccagcatctccaagca 66276000
Query: 602 ggagacagaactgagcccagagatgatttccag 634
|||||||||||||||||||||||||||||||||
Sbjct: 66275999 ggagacagaactgagcccagagatgatttccag 66275967
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 878 agatccaccccaggccctgcagctcccaatggactatgtccatcgagtcaagcggactca 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66274013 agatccaccccaggccctgcagctcccaatggactatgtccatcgagtcaagcggactca 66273954
Query: 938 ctctcagggtggctatggctcacaggggt 966
|||||||||||||||||||||||||||||
Sbjct: 66273953 ctctcagggtggctatggctcacaggggt 66273925
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1233 ggcatcactcagttgcgtttcaaaccggcttacaacccctacaccgagcccagcatggag 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66273382 ggcatcactcagttgcgtttcaaaccggcttacaacccctacaccgagcccagcatggag 66273323
Query: 1293 gtgttcagctaccaccaagg 1312
||||||||||||||||||||
Sbjct: 66273322 gtgttcagctaccaccaagg 66273303
Score = 60.0 bits (30), Expect = 4e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 822 ctcttccagccccagcagcacccagcacgtgaccagcatgacactttctt 871
||||||||| ||||||||||||||| || ||||||||||||||| ||||
Sbjct: 96326066 ctcttccagtcccagcagcacccagtacacgaccagcatgacactctctt 96326115
>Sscrofa_Chr03
|| Length = 144787322
Score = 77.8 bits (39), Expect = 2e-11
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 528 ctgctgactgaagtgaccctgaagacctactgggtgagcaaaggcagtgccttcagcacc 587
||||| |||||| ||||||||||||||| || | ||| |||||||||| |||||||| |
Sbjct: 68488661 ctgctaactgaactgaccctgaagacctgctagctgacaaaaggcagtgtcttcagcatc 68488602
Query: 588 agcatctccaagcaggagacaga 610
||||| |||||||||||| ||||
Sbjct: 68488601 agcatttccaagcaggaggcaga 68488579
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,054,204
Number of extensions: 307
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 15
Length of query: 1808
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1786
Effective length of database: 2,808,408,574
Effective search space: 5015817713164
Effective search space used: 5015817713164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)