Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012997
(1201 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539162.2| PREDICTED: similar to CG32066-PB, isoform B [Ca... 433 e-131
Alignment gi|XP_532880.2| PREDICTED: similar to CG32066-PB, isoform B [Ca... 360 e-107
>ref|XP_539162.2| PREDICTED: similar to CG32066-PB, isoform B [Canis familiaris].
Length = 324
Score = 433 bits (1114), Expect(2) = e-131
Identities = 221/245 (90%), Positives = 223/245 (91%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNL+KVLT +FFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
Sbjct: 1 MGNLIKVLTRDIDHNAAHFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
HEIREAIQHPADEKLQEKAWGAVVPLVGKLK FYEFSQ TSTPYSPTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKTFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 241 RSRFT 245
Score = 53.5 bits (127), Expect(2) = e-131
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 1120 HEETVSFCLKVMVGVIILYDHVHPGGA 1200
+EETVSFCL+VMVGVIILYDHVHP GA
Sbjct: 246 NEETVSFCLRVMVGVIILYDHVHPVGA 272
>ref|XP_532880.2| PREDICTED: similar to CG32066-PB, isoform B [Canis familiaris].
Length = 363
Score = 360 bits (923), Expect(2) = e-107
Identities = 182/248 (73%), Positives = 207/248 (83%)
Frame = +2
Query: 377 YLNMGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYR 556
+ MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+
Sbjct: 38 FAGMGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYK 96
Query: 557 GAGHEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYS 736
GAG EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS T PY+
Sbjct: 97 GAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYT 156
Query: 737 PTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGEN 916
PTQHLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + EN
Sbjct: 157 PTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIEN 216
Query: 917 EVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLET 1096
EVNNE+ANRMSLFYAEATPMLKTLS+AT FVSENK LPIENTTDCLSTM SVC+VMLET
Sbjct: 217 EVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLET 276
Query: 1097 PEYRSRFT 1120
PEYRSRFT
Sbjct: 277 PEYRSRFT 284
Score = 49.3 bits (116), Expect(2) = e-107
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 1123 EETVSFCLKVMVGVIILYDHVHPGGA 1200
EET+ FC++VMVGVIILYDHVHP GA
Sbjct: 286 EETLMFCMRVMVGVIILYDHVHPVGA 311
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,160,928
Number of extensions: 857222
Number of successful extensions: 2009
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2007
Number of HSP's successfully gapped: 4
Length of query: 400
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 295
Effective length of database: 15,374,224
Effective search space: 4535396080
Effective search space used: 4535396080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012997
(1201 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039512.1| hypothetical protein LOC510019 [Bos taurus]. 461 e-139
Alignment gi|NP_001068640.1| family with sequence similarity 49, member A... 359 e-107
>ref|NP_001039512.1| hypothetical protein LOC510019 [Bos taurus].
Length = 324
Score = 461 bits (1186), Expect(2) = e-139
Identities = 232/245 (94%), Positives = 232/245 (94%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQ TSTPYSPTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 241 RSRFT 245
Score = 53.5 bits (127), Expect(2) = e-139
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 1120 HEETVSFCLKVMVGVIILYDHVHPGGA 1200
+EETVSFCL+VMVGVIILYDHVHP GA
Sbjct: 246 NEETVSFCLRVMVGVIILYDHVHPVGA 272
>ref|NP_001068640.1| family with sequence similarity 49, member A [Bos taurus].
Length = 323
Score = 359 bits (921), Expect(2) = e-107
Identities = 182/245 (74%), Positives = 206/245 (84%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 59
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS T PY+PTQ
Sbjct: 60 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 119
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 120 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 179
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NE+ANRMSLFYAEATPMLKTLS+AT FVSENK LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 180 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY 239
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 240 RSRFT 244
Score = 49.3 bits (116), Expect(2) = e-107
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 1123 EETVSFCLKVMVGVIILYDHVHPGGA 1200
EET+ FC++VMVGVIILYDHVHP GA
Sbjct: 246 EETLMFCMRVMVGVIILYDHVHPVGA 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,681,773
Number of extensions: 857935
Number of successful extensions: 2209
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2207
Number of HSP's successfully gapped: 4
Length of query: 400
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 296
Effective length of database: 14,240,222
Effective search space: 4215105712
Effective search space used: 4215105712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012997
(1201 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925120.2| PREDICTED: protein FAM49B isoform 1 [Sus scr... 461 e-139
Alignment gi|XP_003355021.1| PREDICTED: protein FAM49B [Sus scrofa]. 436 e-131
Alignment gi|XP_003125393.1| PREDICTED: protein FAM49A-like [Sus scrofa]. 359 e-107
Alignment gi|XP_003361838.1| PREDICTED: protein FAM49B-like, partial [Sus... 200 3e-61
>ref|XP_001925120.2| PREDICTED: protein FAM49B isoform 1 [Sus scrofa].
Length = 324
Score = 461 bits (1186), Expect(2) = e-139
Identities = 232/245 (94%), Positives = 232/245 (94%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQ TSTPYSPTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 241 RSRFT 245
Score = 53.5 bits (127), Expect(2) = e-139
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 1120 HEETVSFCLKVMVGVIILYDHVHPGGA 1200
+EETVSFCL+VMVGVIILYDHVHP GA
Sbjct: 246 NEETVSFCLRVMVGVIILYDHVHPVGA 272
>ref|XP_003355021.1| PREDICTED: protein FAM49B [Sus scrofa].
Length = 324
Score = 436 bits (1120), Expect(2) = e-131
Identities = 222/245 (90%), Positives = 224/245 (91%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNL+KVLT +FFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
Sbjct: 1 MGNLIKVLTRDIDHNAAHFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQ TSTPYSPTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 241 RSRFT 245
Score = 53.5 bits (127), Expect(2) = e-131
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 1120 HEETVSFCLKVMVGVIILYDHVHPGGA 1200
+EETVSFCL+VMVGVIILYDHVHP GA
Sbjct: 246 NEETVSFCLRVMVGVIILYDHVHPVGA 272
>ref|XP_003125393.1| PREDICTED: protein FAM49A-like [Sus scrofa].
Length = 323
Score = 359 bits (921), Expect(2) = e-107
Identities = 182/245 (74%), Positives = 206/245 (84%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 59
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS T PY+PTQ
Sbjct: 60 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 119
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 120 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 179
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NE+ANRMSLFYAEATPMLKTLS+AT FVSENK LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 180 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY 239
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 240 RSRFT 244
Score = 49.3 bits (116), Expect(2) = e-107
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 1123 EETVSFCLKVMVGVIILYDHVHPGGA 1200
EET+ FC++VMVGVIILYDHVHP GA
Sbjct: 246 EETLMFCMRVMVGVIILYDHVHPVGA 271
>ref|XP_003361838.1| PREDICTED: protein FAM49B-like, partial [Sus scrofa].
Length = 178
Score = 200 bits (509), Expect(2) = 3e-61
Identities = 99/99 (100%), Positives = 99/99 (100%)
Frame = +2
Query: 824 MTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATT 1003
MTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATT
Sbjct: 1 MTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATT 60
Query: 1004 KFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFT 1120
KFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFT
Sbjct: 61 KFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFT 99
Score = 53.5 bits (127), Expect(2) = 3e-61
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 1120 HEETVSFCLKVMVGVIILYDHVHPGGA 1200
+EETVSFCL+VMVGVIILYDHVHP GA
Sbjct: 100 NEETVSFCLRVMVGVIILYDHVHPVGA 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,411,096
Number of extensions: 574296
Number of successful extensions: 1407
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1404
Number of HSP's successfully gapped: 8
Length of query: 400
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,829,335
Effective search space: 2639971165
Effective search space used: 2639971165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012997
(1201 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659095.1| hypothetical protein LOC223601 [Mus musculus]. 461 e-139
Alignment gi|NP_001139591.1| family with sequence similarity 49, member A... 359 e-107
Alignment gi|NP_084034.2| family with sequence similarity 49, member A [M... 359 e-107
>ref|NP_659095.1| hypothetical protein LOC223601 [Mus musculus].
Length = 324
Score = 461 bits (1186), Expect(2) = e-139
Identities = 232/245 (94%), Positives = 232/245 (94%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQ TSTPYSPTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 241 RSRFT 245
Score = 53.5 bits (127), Expect(2) = e-139
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 1120 HEETVSFCLKVMVGVIILYDHVHPGGA 1200
+EETVSFCL+VMVGVIILYDHVHP GA
Sbjct: 246 NEETVSFCLRVMVGVIILYDHVHPVGA 272
>ref|NP_001139591.1| family with sequence similarity 49, member A [Mus musculus].
Length = 323
Score = 359 bits (921), Expect(2) = e-107
Identities = 182/245 (74%), Positives = 206/245 (84%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAG 59
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS T PY+PTQ
Sbjct: 60 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 119
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 120 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 179
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NE+ANRMSLFYAEATPMLKTLS+AT FVSENK LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 180 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY 239
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 240 RSRFT 244
Score = 49.3 bits (116), Expect(2) = e-107
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 1123 EETVSFCLKVMVGVIILYDHVHPGGA 1200
EET+ FC++VMVGVIILYDHVHP GA
Sbjct: 246 EETLMFCMRVMVGVIILYDHVHPVGA 271
>ref|NP_084034.2| family with sequence similarity 49, member A [Mus musculus].
Length = 323
Score = 359 bits (921), Expect(2) = e-107
Identities = 182/245 (74%), Positives = 206/245 (84%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAG 59
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS T PY+PTQ
Sbjct: 60 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 119
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 120 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 179
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NE+ANRMSLFYAEATPMLKTLS+AT FVSENK LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 180 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY 239
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 240 RSRFT 244
Score = 49.3 bits (116), Expect(2) = e-107
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 1123 EETVSFCLKVMVGVIILYDHVHPGGA 1200
EET+ FC++VMVGVIILYDHVHP GA
Sbjct: 246 EETLMFCMRVMVGVIILYDHVHPVGA 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,828,317
Number of extensions: 724655
Number of successful extensions: 1812
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1808
Number of HSP's successfully gapped: 6
Length of query: 400
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 296
Effective length of database: 12,493,815
Effective search space: 3698169240
Effective search space used: 3698169240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012997
(1201 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057707.3| hypothetical protein LOC51571 [Homo sapiens]. 461 e-139
Alignment gi|NP_110424.1| family with sequence similarity 49, member A [H... 359 e-107
>ref|NP_057707.3| hypothetical protein LOC51571 [Homo sapiens].
Length = 324
Score = 461 bits (1186), Expect(2) = e-139
Identities = 232/245 (94%), Positives = 232/245 (94%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG
Sbjct: 1 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 60
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQ TSTPYSPTQ
Sbjct: 61 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQ 120
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN
Sbjct: 121 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 180
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY
Sbjct: 181 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 240
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 241 RSRFT 245
Score = 53.5 bits (127), Expect(2) = e-139
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 1120 HEETVSFCLKVMVGVIILYDHVHPGGA 1200
+EETVSFCL+VMVGVIILYDHVHP GA
Sbjct: 246 NEETVSFCLRVMVGVIILYDHVHPVGA 272
>ref|NP_110424.1| family with sequence similarity 49, member A [Homo sapiens].
Length = 323
Score = 359 bits (921), Expect(2) = e-107
Identities = 182/245 (74%), Positives = 206/245 (84%)
Frame = +2
Query: 386 MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAG 565
MGNLLKVLT ++E P+FFLDFENAQPTE E+EI+NQ++ VL+D+E IL DLQ+Y+GAG
Sbjct: 1 MGNLLKVLT-REIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAG 59
Query: 566 HEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQXXXXXXXXXXXXXTSTPYSPTQ 745
EIR+AIQ+P D +LQEKAW AV PLV +LK+FYEFS T PY+PTQ
Sbjct: 60 PEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQ 119
Query: 746 HLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVN 925
HLEREQALAK+FAEILHFTLRFDELKM NPAIQNDFSYYRRT+SR RINN+ + ENEVN
Sbjct: 120 HLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVN 179
Query: 926 NELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEY 1105
NE+ANRMSLFYAEATPMLKTLS+AT FVSENK LPIENTTDCLSTM SVC+VMLETPEY
Sbjct: 180 NEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEY 239
Query: 1106 RSRFT 1120
RSRFT
Sbjct: 240 RSRFT 244
Score = 49.3 bits (116), Expect(2) = e-107
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 1123 EETVSFCLKVMVGVIILYDHVHPGGA 1200
EET+ FC++VMVGVIILYDHVHP GA
Sbjct: 246 EETLMFCMRVMVGVIILYDHVHPVGA 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,475,427
Number of extensions: 846618
Number of successful extensions: 1968
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 4
Length of query: 400
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 295
Effective length of database: 14,835,944
Effective search space: 4376603480
Effective search space used: 4376603480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012997
(1201 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 375 e-101
Sscrofa_Chr04 280 2e-72
gb|GL895550.2| Sus scrofa unplaced genomic scaffold ChrUScaf3434 167 2e-38
Sscrofa_Chr15 121 9e-25
>Sscrofa_Chr08
|| Length = 148491826
Score = 375 bits (189), Expect = e-101
Identities = 295/327 (90%), Gaps = 5/327 (1%)
Strand = Plus / Plus
Query: 876 gtcgtatgaggattaataatgttccagcagaaggagaaaatgaagtaaataatgaattgg 935
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 112091180 gtcgtatgagaattaataatgttccagaagaaggagaaaatgaagtaaataatgaattgg 112091239
Query: 936 caaatcgaatgtctttgttttatgctgaggcaaccccaatgctgaaaaccttaagtgatg 995
||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 112091240 aaaatcgaatatctttgtttt-tgctgaggcaatcccaatactgaaaaccttaagtgatg 112091298
Query: 996 ccacaacaaaatttgtatcagagaataaaaatttaccgatagaaaacaccacagattgtc 1055
|||||| |||||||||||||||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 112091299 ccacaaaaaaatttgtatcagagaataaaaaattaccaatagaaaatactacagattgtc 112091358
Query: 1056 taagcaccatggctagtgtgtgcagagtcatgcttgaaacgccggaatacagaagcaggt 1115
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
Sbjct: 112091359 taagcaccatggctagtgtgtgcagagtcatgcttgaaacactggaatacagaagtcgat 112091418
Query: 1116 tcac-catgaagagacagtgtcattctgcttgaaggtaatggtgggcgtcataatactct 1174
| || || |||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct: 112091419 ttacagattaagagacagtgtcattctgcttaagggtaatggtg---aacataatactct 112091475
Query: 1175 acgaccacgtacatccagggggagcat 1201
| |||||| |||||| || ||||||||
Sbjct: 112091476 atgaccacatacatcaagtgggagcat 112091502
Score = 349 bits (176), Expect = 2e-93
Identities = 225/240 (93%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 467 cctacagaatctgagaaggaaatttataatcaggtgaatgtagtgctaaaagatgcagag 526
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112084131 cctacagaatctgagaaggaaatttataatcaggtgaatgtagtactaaaagatgcagag 112084190
Query: 527 ggcatcttggaggacttgcagtcatatagaggagctggccatgaaatacgagaggcaatc 586
||||| ||| |||||||||| ||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 112084191 ggcat-ttgaaggacttgcaatcatatagaagagctggacatgaaatatgagaggcaatc 112084249
Query: 587 caacatccagcagatgagaagttgcaagagaaggcatggggtgcagttgttccactagta 646
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112084250 cagcatccagaatatgagaagttgcaagagaaggcatggggtgcagttgttccactagta 112084309
Query: 647 ggcaaattaaagaaattttacgaattttctcagaggttagaagcagccttaagaggtctt 706
| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 112084310 gacaaattaaagcaattttataaattttctcagaggttagaagcagcattaagaggtctt 112084369
Score = 349 bits (176), Expect = 2e-93
Identities = 225/240 (93%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 467 cctacagaatctgagaaggaaatttataatcaggtgaatgtagtgctaaaagatgcagag 526
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112254562 cctacagaatctgagaaggaaatttataatcaggtgaatgtagtactaaaagatgcagag 112254621
Query: 527 ggcatcttggaggacttgcagtcatatagaggagctggccatgaaatacgagaggcaatc 586
||||| ||| |||||||||| ||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 112254622 ggcat-ttgaaggacttgcaatcatatagaagagctggacatgaaatatgagaggcaatc 112254680
Query: 587 caacatccagcagatgagaagttgcaagagaaggcatggggtgcagttgttccactagta 646
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112254681 cagcatccagaatatgagaagttgcaagagaaggcatggggtgcagttgttccactagta 112254740
Query: 647 ggcaaattaaagaaattttacgaattttctcagaggttagaagcagccttaagaggtctt 706
| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 112254741 gacaaattaaagcaattttataaattttctcagaggttagaagcagcattaagaggtctt 112254800
Score = 105 bits (53), Expect = 6e-20
Identities = 83/92 (90%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 782 gcagaaattcttcattttacactccggtttgatgaactcaagatgacaaatcc--tgcca 839
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||
Sbjct: 112084873 gcagaaattcttcattttactctccagtttgatgagctcaagatgacaaatcctatgcca 112084932
Query: 840 tacagaatgatttcagctattatagaagaaca 871
|| |||| ||||||||||| |||||||||||
Sbjct: 112084933 tatggaataatttcagctataatagaagaaca 112084964
Score = 105 bits (53), Expect = 6e-20
Identities = 83/92 (90%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 782 gcagaaattcttcattttacactccggtttgatgaactcaagatgacaaatcc--tgcca 839
|||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||
Sbjct: 112255304 gcagaaattcttcattttactctccagtttgatgagctcaagatgacaaatcctatgcca 112255363
Query: 840 tacagaatgatttcagctattatagaagaaca 871
|| |||| ||||||||||| |||||||||||
Sbjct: 112255364 tatggaataatttcagctataatagaagaaca 112255395
Score = 81.8 bits (41), Expect = 8e-13
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 697 aagaggtcttctgggagccttgacaagtaccccatactctcccacccagcatctaga 753
|||| |||||||||||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct: 112084810 aagacgtcttctgggagccctgagaagtaccccatattctcccacccagcatctaga 112084866
Score = 81.8 bits (41), Expect = 8e-13
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 697 aagaggtcttctgggagccttgacaagtaccccatactctcccacccagcatctaga 753
|||| |||||||||||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct: 112255241 aagacgtcttctgggagccctgagaagtaccccatattctcccacccagcatctaga 112255297
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 339 agagggacaagaacagaatcaccagcactggctga 373
|||||||||||||||||||||||||||||||||||
Sbjct: 112084086 agagggacaagaacagaatcaccagcactggctga 112084120
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 339 agagggacaagaacagaatcaccagcactggctga 373
|||||||||||||||||||||||||||||||||||
Sbjct: 112254517 agagggacaagaacagaatcaccagcactggctga 112254551
>Sscrofa_Chr04
|| Length = 143465943
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 683 ttagaagcagccttaagaggtcttctgggagccttgacaagtaccccatactctcccacc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10843488 ttagaagcagccttaagaggtcttctgggagccttgacaagtaccccatactctcccacc 10843547
Query: 743 cagcatctagagcgagagcaggctcttgctaaacagttcgcagaaattcttcattttaca 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10843548 cagcatctagagcgagagcaggctcttgctaaacagttcgcagaaattcttcattttaca 10843607
Query: 803 ctccggtttgatgaactcaag 823
|||||||||||||||||||||
Sbjct: 10843608 ctccggtttgatgaactcaag 10843628
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 459 atgcccagcctacagaatctgagaaggaaatttataatcaggtgaatgtagtgctaaaag 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10832766 atgcccagcctacagaatctgagaaggaaatttataatcaggtgaatgtagtgctaaaag 10832825
Query: 519 atgcagagggcatcttggaggacttgcagtcatatagaggagctggccatgaaatacgag 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10832826 atgcagagggcatcttggaggacttgcagtcatatagaggagctggccatgaaatacgag 10832885
Query: 579 agg 581
|||
Sbjct: 10832886 agg 10832888
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 902 gcagaaggagaaaatgaagtaaataatgaattggcaaatcgaatgtctttgttttatgct 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10847705 gcagaaggagaaaatgaagtaaataatgaattggcaaatcgaatgtctttgttttatgct 10847764
Query: 962 gaggcaaccccaatgctgaaaaccttaagtgatgccacaacaaaatttgtatcagag 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10847765 gaggcaaccccaatgctgaaaaccttaagtgatgccacaacaaaatttgtatcagag 10847821
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 579 aggcaatccaacatccagcagatgagaagttgcaagagaaggcatggggtgcagttgttc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10836839 aggcaatccaacatccagcagatgagaagttgcaagagaaggcatggggtgcagttgttc 10836898
Query: 639 cactagtaggcaaattaaagaaattttacgaattttctcagaggttag 686
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10836899 cactagtaggcaaattaaagaaattttacgaattttctcagaggttag 10836946
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 374 aggtaccttaacatggggaatcttcttaaagttttgacatgcacagaccttgagcagggg 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10825871 aggtaccttaacatggggaatcttcttaaagttttgacatgcacagaccttgagcagggg 10825930
Query: 434 ccaaattttttccttgattttgaaa 458
|||||||||||||||||||||||||
Sbjct: 10825931 ccaaattttttccttgattttgaaa 10825955
Score = 167 bits (84), Expect = 2e-38
Identities = 100/104 (96%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 1099 ggaatacagaagcaggttcacca-tgaagagacagtgtcattctgcttgaaggtaatggt 1157
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 10850367 ggaatacagaagcaggttcaccaatgaggagacagtgtcattctgcttgagggtaatggt 10850426
Query: 1158 gggcgtcataatactctacgaccacgtacatccagggggagcat 1201
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10850427 gggcgtcataatactctacgaccacgtacatccagtgggagcat 10850470
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1017 agaataaaaatttaccgatagaaaacaccacagattgtctaagcaccatggctagtgtgt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10849010 agaataaaaatttaccgatagaaaacaccacagattgtctaagcaccatggctagtgtgt 10849069
Query: 1077 gcagagtcatgcttgaaacgccg 1099
|||||||||||||||||||||||
Sbjct: 10849070 gcagagtcatgcttgaaacgccg 10849092
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 822 agatgacaaatcctgccatacagaatgatttcagctattatagaagaacattgagtcgta 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10845627 agatgacaaatcctgccatacagaatgatttcagctattatagaagaacattgagtcgta 10845686
Query: 882 tgaggattaataatgttccag 902
|||||||||||||||||||||
Sbjct: 10845687 tgaggattaataatgttccag 10845707
Score = 155 bits (78), Expect = 7e-35
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 gcgccggcggctcggcttctcgaaggtaaacggcgtttcctcttcctcctcgttgcgtct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10692347 gcgccggcggctcggcttctcgaaggtaaacggcgtttcctcttcctcctcggtgcgtct 10692406
Query: 61 cttccttttatagttatttctc 82
||||||||||||||||||||||
Sbjct: 10692407 cttccttttatagttatttctc 10692428
Score = 111 bits (56), Expect = 9e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 281 caggggaagaaactgaggcctggagtttgagtcattcactcaacgttaccaagttg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10736162 caggggaagaaactgaggcctggagtttgagtcattcactcaacgttaccaagttg 10736217
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 336 gatagagggacaagaacagaatcaccagcactggctgaaggta 378
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10801066 gatagagggacaagaacagaatcaccagcactggctgaaggta 10801108
>gb|GL895550.2| Sus scrofa unplaced genomic scaffold ChrUScaf3434
Length = 23775
Score = 167 bits (84), Expect = 2e-38
Identities = 100/104 (96%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 1099 ggaatacagaagcaggttcacca-tgaagagacagtgtcattctgcttgaaggtaatggt 1157
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 3240 ggaatacagaagcaggttcaccaatgaggagacagtgtcattctgcttgagggtaatggt 3299
Query: 1158 gggcgtcataatactctacgaccacgtacatccagggggagcat 1201
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3300 gggcgtcataatactctacgaccacgtacatccagtgggagcat 3343
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1017 agaataaaaatttaccgatagaaaacaccacagattgtctaagcaccatggctagtgtgt 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1819 agaataaaaatttaccgatagaaaacaccacagattgtctaagcaccatggctagtgtgt 1878
Query: 1077 gcagagtcatgcttgaaacgccg 1099
|||||||||||||||||||||||
Sbjct: 1879 gcagagtcatgcttgaaacgccg 1901
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 822 agatgacaaatcctgccatacagaatgatttcagctattatagaagaacattgagtcgta 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgacaaatcctgccatacagaatgatttcagctattatagaagaacattgagtcgta 440
Query: 882 tgaggattaataatgttccag 902
|||||||||||||||||||||
Sbjct: 441 tgaggattaataatgttccag 461
>Sscrofa_Chr15
|| Length = 157681621
Score = 121 bits (61), Expect = 9e-25
Identities = 101/113 (89%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 1069 tagtgtgtgcagagtcatgcttgaaacgccggaatacagaagcaggttcacca-tgaaga 1127
|||||||||||||||| |||||||||| | ||||||||||||||| || || | ||||||
Sbjct: 156594618 tagtgtgtgcagagtcgtgcttgaaacactggaatacagaagcagatttacaaatgaaga 156594677
Query: 1128 gacagtgtcattctgcttgaaggtaatggtgggcgtcataatactctacgacc 1180
||||||||||||||||| || ||||||| |||| |||||||||||||| ||||
Sbjct: 156594678 gacagtgtcattctgctggagggtaatgatgggtgtcataatactctatgacc 156594730
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,724,497
Number of extensions: 343
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 24
Length of query: 1201
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1180
Effective length of database: 2,808,413,156
Effective search space: 3313927524080
Effective search space used: 3313927524080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)