Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013001
(1079 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863906.1| PREDICTED: similar to calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863882.1| PREDICTED: similar to calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863859.1| PREDICTED: similar to Calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863772.1| PREDICTED: similar to calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863682.1| PREDICTED: similar to Calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863663.1| PREDICTED: similar to Calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863595.1| PREDICTED: similar to Calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863574.1| PREDICTED: similar to Calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863493.1| PREDICTED: similar to Calcium/calmodulin-depend... 647 0.0
Alignment gi|XP_863443.1| PREDICTED: similar to calcium/calmodulin-depend... 647 0.0
>ref|XP_863906.1| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II
gamma isoform 3 isoform 40 [Canis familiaris].
Length = 542
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863882.1| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II
gamma isoform 1 isoform 39 [Canis familiaris].
Length = 588
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863859.1| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
type II gamma chain (CaM-kinase II gamma chain) (CaM
kinase II gamma subunit) (CaMK-II gamma subunit) isoform
38 [Canis familiaris].
Length = 527
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863772.1| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II
gamma isoform 3 isoform 34 [Canis familiaris].
Length = 539
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863682.1| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
type II gamma chain (CaM-kinase II gamma chain) (CaM
kinase II gamma subunit) (CaMK-II gamma subunit) isoform
30 [Canis familiaris].
Length = 542
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863663.1| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
type II gamma chain (CaM-kinase II gamma chain) (CaM
kinase II gamma subunit) (CaMK-II gamma subunit) isoform
29 [Canis familiaris].
Length = 516
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863595.1| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
type II gamma chain (CaM-kinase II gamma chain) (CaM
kinase II gamma subunit) (CaMK-II gamma subunit) isoform
26 [Canis familiaris].
Length = 519
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863574.1| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
type II gamma chain (CaM-kinase II gamma chain) (CaM
kinase II gamma subunit) (CaMK-II gamma subunit) isoform
25 [Canis familiaris].
Length = 539
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863493.1| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
type II gamma chain (CaM-kinase II gamma chain) (CaM
kinase II gamma subunit) (CaMK-II gamma subunit) isoform
21 [Canis familiaris].
Length = 524
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|XP_863443.1| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II
gamma isoform 4 isoform 19 [Canis familiaris].
Length = 477
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,648,053
Number of extensions: 990310
Number of successful extensions: 5863
Number of sequences better than 1.0e-05: 890
Number of HSP's gapped: 4170
Number of HSP's successfully gapped: 921
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013001
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013001
(1079 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091033.1| calcium/calmodulin-dependent protein kinase ... 645 0.0
Alignment gi|NP_001039798.1| calcium/calmodulin-dependent protein kinase ... 598 e-171
Alignment gi|NP_001030434.1| calcium/calmodulin-dependent protein kinase ... 595 e-170
Alignment gi|NP_001069406.1| calcium/calmodulin-dependent protein kinase ... 577 e-165
Alignment gi|NP_001095951.1| peripheral plasma membrane protein CASK [Bos... 274 9e-74
Alignment gi|XP_002691060.1| PREDICTED: calcium/calmodulin-dependent prot... 236 3e-62
Alignment gi|NP_001070336.1| calcium/calmodulin-dependent protein kinase ... 236 3e-62
Alignment gi|NP_001069787.1| calcium/calmodulin-dependent protein kinase ... 224 8e-59
Alignment gi|XP_616231.5| PREDICTED: doublecortin-like kinase 2 [Bos taur... 224 1e-58
Alignment gi|XP_002694373.1| PREDICTED: doublecortin-like kinase 2 [Bos t... 223 2e-58
>ref|NP_001091033.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
[Bos taurus].
Length = 495
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_001039798.1| calcium/calmodulin-dependent protein kinase type II subunit delta
[Bos taurus].
Length = 488
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_001030434.1| calcium/calmodulin-dependent protein kinase type II subunit beta [Bos
taurus].
Length = 542
Score = 595 bits (1533), Expect = e-170
Identities = 288/316 (91%), Positives = 301/316 (95%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATT TCTRFTD+YQL+E++GKGAFSVVRRCVK + EYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTVTCTRFTDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKH NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LE+V H HQ +VHRDLKPENLLLASKCKGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRK+ YGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRI A +ALKHPWVCQRSTVASMMHRQETVECL+KFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRIMAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTML +RNFSV
Sbjct: 301 KGAILTTMLATRNFSV 316
>ref|NP_001069406.1| calcium/calmodulin-dependent protein kinase type II subunit alpha
[Bos taurus].
Length = 478
Score = 577 bits (1488), Expect = e-165
Identities = 278/312 (89%), Positives = 296/312 (94%)
Frame = +1
Query: 139 TATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREAR 318
T TCTRFT++YQLFEELGKGAFSVVRRCVK + QEYAAKIINTKKLSARDHQKLEREAR
Sbjct: 3 TITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREAR 62
Query: 319 ICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILES 498
ICRLLKHPNIVRLHDSISEEG HYL+FDLVTGGELFEDIVAREYYSEADASHCI QILE+
Sbjct: 63 ICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEA 122
Query: 499 VNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSP 678
V H HQ +VHRDLKPENLLLASK KGAAVKLADFGLAIEV+GEQQAWFGFAGTPGYLSP
Sbjct: 123 VLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSP 182
Query: 679 EVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTP 858
EVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDTVTP
Sbjct: 183 EVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTP 242
Query: 859 EAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGA 1038
EAK+LIN+MLTINP+KRITA +ALKHPW+ RSTVAS MHRQETV+CL+KFNAR+KLKGA
Sbjct: 243 EAKDLINKMLTINPSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGA 302
Query: 1039 ILTTMLVSRNFS 1074
ILTTML +RNFS
Sbjct: 303 ILTTMLATRNFS 314
>ref|NP_001095951.1| peripheral plasma membrane protein CASK [Bos taurus].
Length = 908
Score = 274 bits (701), Expect = 9e-74
Identities = 140/306 (45%), Positives = 205/306 (66%), Gaps = 7/306 (2%)
Frame = +1
Query: 157 FTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSAR---DHQKLEREARICR 327
F D Y+L E +GKG FSVVRRC+ + + Q++A KI++ K ++ + L+REA IC
Sbjct: 8 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICH 67
Query: 328 LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVARE----YYSEADASHCIHQILE 495
+LKHP+IV L ++ S +G Y+VF+ + G +L +IV R YSEA ASH + QILE
Sbjct: 68 MLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILE 127
Query: 496 SVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLS 675
++ + H ++I+HRD+KP +LLASK A VKL FG+AI++ G GTP +++
Sbjct: 128 ALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMA 187
Query: 676 PEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVT 855
PEV++++PYGKPVD+W CGVIL+ILL G PF+ + +L++ I G Y +W ++
Sbjct: 188 PEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHIS 246
Query: 856 PEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKG 1035
AK+L+ +ML ++PA+RIT +AL HPW+ +R A +H ETVE LRKFNAR+KLKG
Sbjct: 247 ESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQLRKFNARRKLKG 306
Query: 1036 AILTTM 1053
A+L +
Sbjct: 307 AVLAAV 312
>ref|XP_002691060.1| PREDICTED: calcium/calmodulin-dependent protein kinase IV-like [Bos
taurus].
Length = 463
Score = 236 bits (602), Expect = 3e-62
Identities = 129/303 (42%), Positives = 192/303 (63%), Gaps = 2/303 (0%)
Frame = +1
Query: 163 DDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHP 342
D +++ ELG+GA S+V RC +K + + YA K++ D + + E + L HP
Sbjct: 44 DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLK----KTVDKKIVRTEIGVLLRLSHP 99
Query: 343 NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHD 522
NI++L + LV +LVTGGELF+ IV + YYSE DA+ + QILE+V ++H++
Sbjct: 100 NIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENG 159
Query: 523 IVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPY 702
IVHRDLKPENLL A+ A +K+ADFGL+ ++ Q GTPGY +PE+LR Y
Sbjct: 160 IVHRDLKPENLLYATPAPDAPLKIADFGLS-KIVEHQVLMKTVCGTPGYCAPEILRGCAY 218
Query: 703 GKPVDIWACGVILYILLVGYPPFWDE--DQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLI 876
G VD+W+ G+I YILL G+ PF+DE DQ ++++I Y F SP WD V+ AK+L+
Sbjct: 219 GPEVDMWSVGIITYILLCGFEPFYDERGDQF-MFRRILNCEYYFISPWWDEVSLNAKDLV 277
Query: 877 NQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGAILTTML 1056
+++ ++P KR+T QAL+HPWV ++ A+ +H + L++FNAR+KLK A+ +
Sbjct: 278 RKLIVLDPKKRLTTFQALQHPWVTGKA--ANFVHMDTAQKKLQEFNARRKLKAAVKAVVA 335
Query: 1057 VSR 1065
SR
Sbjct: 336 SSR 338
>ref|NP_001070336.1| calcium/calmodulin-dependent protein kinase type 1 [Bos taurus].
Length = 370
Score = 236 bits (601), Expect = 3e-62
Identities = 126/299 (42%), Positives = 179/299 (59%)
Frame = +1
Query: 163 DDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHP 342
D Y + LG GAFS V K + + A K I K L ++ +E E + +KHP
Sbjct: 18 DIYDFRDVLGTGAFSEVILAEDKRTQKMVAIKCIAKKALEGKEGS-MENEIAVLHKIKHP 76
Query: 343 NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHD 522
NIV L D G YL+ LV+GGELF+ IV + +Y+E DAS I Q+L++V ++H
Sbjct: 77 NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 136
Query: 523 IVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPY 702
IVHRDLKPENLL S + + + ++DFGL+ +++ GTPGY++PEVL + PY
Sbjct: 137 IVHRDLKPENLLYYSLDEDSKIMISDFGLS-KMEDPSSVLSTACGTPGYVAPEVLAQKPY 195
Query: 703 GKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQ 882
K VD W+ GVI YILL GYPPF+DE+ KL++QI Y+F SP WD ++ AK+ I
Sbjct: 196 SKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRH 255
Query: 883 MLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGAILTTMLV 1059
++ +P KR T +QAL+HPW+ + + +H Q E ++K A+ K K A T +V
Sbjct: 256 LMEKDPEKRFTCEQALQHPWIAGDTALDKNIH-QSVSEQIKKNFAKSKWKQAFNATAVV 313
>ref|NP_001069787.1| calcium/calmodulin-dependent protein kinase type 1B [Bos taurus].
Length = 342
Score = 224 bits (572), Expect = 8e-59
Identities = 119/260 (45%), Positives = 163/260 (62%), Gaps = 1/260 (0%)
Frame = +1
Query: 169 YQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 348
Y++ E+LG GAFS V ++ S+ A K I K L ++ +E E + R + HPNI
Sbjct: 15 YEIREKLGSGAFSEVVLAQERGSSHLVALKCIPKKALRGKE-ALVENEIAVLRRVSHPNI 73
Query: 349 VRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV 528
V L D YL +LVTGGELF+ I+ R Y+E DASH + Q+L +V+++H IV
Sbjct: 74 VALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVAQVLGAVSYLHSLGIV 133
Query: 529 HRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFA-GTPGYLSPEVLRKDPYG 705
HRDLKPENLL A+ + + + ++DFGL+ G G A GTPGY++PE+L + PYG
Sbjct: 134 HRDLKPENLLYATPFEDSKIMVSDFGLSKIQAGNM---LGTACGTPGYVAPELLEQKPYG 190
Query: 706 KPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQM 885
K VD+WA GVI YILL GYPPF+DE +L+ QI Y+F SP WD ++ AK+ I +
Sbjct: 191 KAVDVWALGVISYILLCGYPPFYDESDPELFSQILRANYEFDSPFWDDISESAKDFIRHL 250
Query: 886 LTINPAKRITADQALKHPWV 945
L +P KR T QAL+H W+
Sbjct: 251 LERDPQKRFTCQQALQHLWI 270
>ref|XP_616231.5| PREDICTED: doublecortin-like kinase 2 [Bos taurus].
Length = 773
Score = 224 bits (570), Expect = 1e-58
Identities = 119/305 (39%), Positives = 183/305 (60%), Gaps = 3/305 (0%)
Frame = +1
Query: 163 DDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHP 342
+ Y++ + +G G F+VV+ C+ +++ +E+A KII+ K ++H +E E I R +KHP
Sbjct: 389 EKYKIGKVIGDGNFAVVKECMDRSTGKEFALKIIDKAKCCGKEHL-IENEVSILRRVKHP 447
Query: 343 NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHD 522
NI+ L + + +LV +LV GG+LF+ I + Y+E D S ++ + ++ ++H +
Sbjct: 448 NIIMLIEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHALN 507
Query: 523 IVHRDLKPENLLLASKCKGA-AVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDP 699
IVHRD+KPENLL+ G ++KL DFGLA V+G + GTP Y++PE++ +
Sbjct: 508 IVHRDIKPENLLVCEYPDGTKSLKLGDFGLATVVEG---PLYTVCGTPTYVAPEIIAETG 564
Query: 700 YGKPVDIWACGVILYILLVGYPPFWDED--QHKLYQQIKAGAYDFPSPEWDTVTPEAKNL 873
YG VD+WA GVI YILL G+PPF E+ Q L+ QI AG +FP+P WD +T AK L
Sbjct: 565 YGLKVDVWAAGVITYILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKEL 624
Query: 874 INQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGAILTTM 1053
I+QML +N R TA Q L HPWV ++ + M + T + + FN + + T +
Sbjct: 625 ISQMLQVNVEARCTAGQILSHPWVSDDASQENNMQAEVTGKLKQHFNNALPKQNSTTTGV 684
Query: 1054 LVSRN 1068
V N
Sbjct: 685 SVIMN 689
>ref|XP_002694373.1| PREDICTED: doublecortin-like kinase 2 [Bos taurus].
Length = 972
Score = 223 bits (569), Expect = 2e-58
Identities = 116/287 (40%), Positives = 177/287 (61%), Gaps = 3/287 (1%)
Frame = +1
Query: 163 DDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHP 342
+ Y++ + +G G F+VV+ C+ +++ +E+A KII+ K ++H +E E I R +KHP
Sbjct: 390 EKYKIGKVIGDGNFAVVKECMDRSTGKEFALKIIDKAKCCGKEHL-IENEVSILRRVKHP 448
Query: 343 NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHD 522
NI+ L + + +LV +LV GG+LF+ I + Y+E D S ++ + ++ ++H +
Sbjct: 449 NIIMLIEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHALN 508
Query: 523 IVHRDLKPENLLLASKCKGA-AVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDP 699
IVHRD+KPENLL+ G ++KL DFGLA V+G + GTP Y++PE++ +
Sbjct: 509 IVHRDIKPENLLVCEYPDGTKSLKLGDFGLATVVEG---PLYTVCGTPTYVAPEIIAETG 565
Query: 700 YGKPVDIWACGVILYILLVGYPPFWDED--QHKLYQQIKAGAYDFPSPEWDTVTPEAKNL 873
YG VD+WA GVI YILL G+PPF E+ Q L+ QI AG +FP+P WD +T AK L
Sbjct: 566 YGLKVDVWAAGVITYILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKEL 625
Query: 874 INQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFN 1014
I+QML +N R TA Q L HPWV ++ + M + T + + FN
Sbjct: 626 ISQMLQVNVEARCTAGQILSHPWVSDDASQENNMQAEVTGKLKQHFN 672
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,058,648
Number of extensions: 964622
Number of successful extensions: 4849
Number of sequences better than 1.0e-05: 588
Number of HSP's gapped: 3637
Number of HSP's successfully gapped: 618
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013001
(1079 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999358.1| calcium/calmodulin-dependent protein kinase typ... 647 0.0
Alignment gi|NP_999546.1| calcium/calmodulin-dependent protein kinase typ... 598 e-171
Alignment gi|XP_003354404.1| PREDICTED: calcium/calmodulin-dependent prot... 577 e-165
Alignment gi|XP_003354408.1| PREDICTED: calcium/calmodulin-dependent prot... 419 e-117
Alignment gi|XP_003360319.1| PREDICTED: peripheral plasma membrane protei... 274 5e-74
Alignment gi|XP_003135084.2| PREDICTED: peripheral plasma membrane protei... 274 5e-74
Alignment gi|XP_003360318.1| PREDICTED: peripheral plasma membrane protei... 274 5e-74
Alignment gi|NP_001177124.1| calcium/calmodulin-dependent protein kinase ... 236 2e-62
Alignment gi|XP_003123873.2| PREDICTED: calcium/calmodulin-dependent prot... 229 2e-60
Alignment gi|NP_001182295.1| calcium/calmodulin-dependent protein kinase ... 223 1e-58
>ref|NP_999358.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
[Sus scrofa].
Length = 539
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|NP_999546.1| calcium/calmodulin-dependent protein kinase type II subunit delta
[Sus scrofa].
Length = 499
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|XP_003354404.1| PREDICTED: calcium/calmodulin-dependent protein kinase type II
subunit alpha-like [Sus scrofa].
Length = 478
Score = 577 bits (1488), Expect = e-165
Identities = 278/312 (89%), Positives = 296/312 (94%)
Frame = +1
Query: 139 TATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREAR 318
T TCTRFT++YQLFEELGKGAFSVVRRCVK + QEYAAKIINTKKLSARDHQKLEREAR
Sbjct: 3 TITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREAR 62
Query: 319 ICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILES 498
ICRLLKHPNIVRLHDSISEEG HYL+FDLVTGGELFEDIVAREYYSEADASHCI QILE+
Sbjct: 63 ICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEA 122
Query: 499 VNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSP 678
V H HQ +VHRDLKPENLLLASK KGAAVKLADFGLAIEV+GEQQAWFGFAGTPGYLSP
Sbjct: 123 VLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSP 182
Query: 679 EVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTP 858
EVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDTVTP
Sbjct: 183 EVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTP 242
Query: 859 EAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGA 1038
EAK+LIN+MLTINP+KRITA +ALKHPW+ RSTVAS MHRQETV+CL+KFNAR+KLKGA
Sbjct: 243 EAKDLINKMLTINPSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGA 302
Query: 1039 ILTTMLVSRNFS 1074
ILTTML +RNFS
Sbjct: 303 ILTTMLATRNFS 314
>ref|XP_003354408.1| PREDICTED: calcium/calmodulin-dependent protein kinase type II
subunit alpha-like [Sus scrofa].
Length = 506
Score = 419 bits (1076), Expect = e-117
Identities = 212/288 (73%), Positives = 238/288 (82%), Gaps = 1/288 (0%)
Frame = +1
Query: 214 RRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLL-KHPNIVRLHDSISEEGFHY 390
R+ KK+ Q +A++ I+ + +S Q L R + + + + VRL S
Sbjct: 49 RKKKKKSGKQVFASEAIDKRLISKTQQQVLTRMRKDWYVAGEDADAVRLLCSQRASSTKR 108
Query: 391 LVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASK 570
VTGGELFEDIVAREYYSEADASHCI QILE+V H HQ +VHRDLKPENLLLASK
Sbjct: 109 -----VTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASK 163
Query: 571 CKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYIL 750
KGAAVKLADFGLAIEV+GEQQAWFGFAGTPGYLSPEVLRKDPYGKPVD+WACGVILYIL
Sbjct: 164 LKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYIL 223
Query: 751 LVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQAL 930
LVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDTVTPEAK+LIN+MLTINP+KRITA +AL
Sbjct: 224 LVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEAL 283
Query: 931 KHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGAILTTMLVSRNFS 1074
KHPW+ RSTVAS MHRQETV+CL+KFNAR+KLKGAILTTML +RNFS
Sbjct: 284 KHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGAILTTMLATRNFS 331
>ref|XP_003360319.1| PREDICTED: peripheral plasma membrane protein CASK isoform 3 [Sus
scrofa].
Length = 898
Score = 274 bits (701), Expect = 5e-74
Identities = 140/306 (45%), Positives = 205/306 (66%), Gaps = 7/306 (2%)
Frame = +1
Query: 157 FTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSAR---DHQKLEREARICR 327
F D Y+L E +GKG FSVVRRC+ + + Q++A KI++ K ++ + L+REA IC
Sbjct: 8 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICH 67
Query: 328 LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVARE----YYSEADASHCIHQILE 495
+LKHP+IV L ++ S +G Y+VF+ + G +L +IV R YSEA ASH + QILE
Sbjct: 68 MLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILE 127
Query: 496 SVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLS 675
++ + H ++I+HRD+KP +LLASK A VKL FG+AI++ G GTP +++
Sbjct: 128 ALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMA 187
Query: 676 PEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVT 855
PEV++++PYGKPVD+W CGVIL+ILL G PF+ + +L++ I G Y +W ++
Sbjct: 188 PEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHIS 246
Query: 856 PEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKG 1035
AK+L+ +ML ++PA+RIT +AL HPW+ +R A +H ETVE LRKFNAR+KLKG
Sbjct: 247 ESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQLRKFNARRKLKG 306
Query: 1036 AILTTM 1053
A+L +
Sbjct: 307 AVLAAV 312
>ref|XP_003135084.2| PREDICTED: peripheral plasma membrane protein CASK isoform 1 [Sus
scrofa].
Length = 921
Score = 274 bits (701), Expect = 5e-74
Identities = 140/306 (45%), Positives = 205/306 (66%), Gaps = 7/306 (2%)
Frame = +1
Query: 157 FTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSAR---DHQKLEREARICR 327
F D Y+L E +GKG FSVVRRC+ + + Q++A KI++ K ++ + L+REA IC
Sbjct: 8 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICH 67
Query: 328 LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVARE----YYSEADASHCIHQILE 495
+LKHP+IV L ++ S +G Y+VF+ + G +L +IV R YSEA ASH + QILE
Sbjct: 68 MLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILE 127
Query: 496 SVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLS 675
++ + H ++I+HRD+KP +LLASK A VKL FG+AI++ G GTP +++
Sbjct: 128 ALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMA 187
Query: 676 PEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVT 855
PEV++++PYGKPVD+W CGVIL+ILL G PF+ + +L++ I G Y +W ++
Sbjct: 188 PEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHIS 246
Query: 856 PEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKG 1035
AK+L+ +ML ++PA+RIT +AL HPW+ +R A +H ETVE LRKFNAR+KLKG
Sbjct: 247 ESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQLRKFNARRKLKG 306
Query: 1036 AILTTM 1053
A+L +
Sbjct: 307 AVLAAV 312
>ref|XP_003360318.1| PREDICTED: peripheral plasma membrane protein CASK isoform 2 [Sus
scrofa].
Length = 897
Score = 274 bits (701), Expect = 5e-74
Identities = 140/306 (45%), Positives = 205/306 (66%), Gaps = 7/306 (2%)
Frame = +1
Query: 157 FTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSAR---DHQKLEREARICR 327
F D Y+L E +GKG FSVVRRC+ + + Q++A KI++ K ++ + L+REA IC
Sbjct: 8 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICH 67
Query: 328 LLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVARE----YYSEADASHCIHQILE 495
+LKHP+IV L ++ S +G Y+VF+ + G +L +IV R YSEA ASH + QILE
Sbjct: 68 MLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILE 127
Query: 496 SVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLS 675
++ + H ++I+HRD+KP +LLASK A VKL FG+AI++ G GTP +++
Sbjct: 128 ALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMA 187
Query: 676 PEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVT 855
PEV++++PYGKPVD+W CGVIL+ILL G PF+ + +L++ I G Y +W ++
Sbjct: 188 PEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG-TKERLFEGIIKGKYKMNPRQWSHIS 246
Query: 856 PEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKG 1035
AK+L+ +ML ++PA+RIT +AL HPW+ +R A +H ETVE LRKFNAR+KLKG
Sbjct: 247 ESAKDLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQLRKFNARRKLKG 306
Query: 1036 AILTTM 1053
A+L +
Sbjct: 307 AVLAAV 312
>ref|NP_001177124.1| calcium/calmodulin-dependent protein kinase type 1 [Sus scrofa].
Length = 370
Score = 236 bits (602), Expect = 2e-62
Identities = 127/299 (42%), Positives = 179/299 (59%)
Frame = +1
Query: 163 DDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHP 342
D Y + LG GAFS V K + + A K I K L ++ +E E + +KHP
Sbjct: 18 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGS-MENEIAVLHKIKHP 76
Query: 343 NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHD 522
NIV L D G YL+ LV+GGELF+ IV + +Y+E DAS I Q+L++V ++H
Sbjct: 77 NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 136
Query: 523 IVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPY 702
IVHRDLKPENLL S + + + ++DFGL+ +++ GTPGY++PEVL + PY
Sbjct: 137 IVHRDLKPENLLYYSLDEDSKIMISDFGLS-KMEDPGSVLSTACGTPGYVAPEVLAQKPY 195
Query: 703 GKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQ 882
K VD W+ GVI YILL GYPPF+DE+ KL++QI Y+F SP WD ++ AK+ I
Sbjct: 196 SKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRH 255
Query: 883 MLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGAILTTMLV 1059
++ +P KR T DQAL+HPW+ + + +H Q E ++K A+ K K A T +V
Sbjct: 256 LMEKDPEKRFTCDQALQHPWIAGDTALDKNIH-QSVSEQIKKNFAKSKWKQAFNATAVV 313
>ref|XP_003123873.2| PREDICTED: calcium/calmodulin-dependent protein kinase type IV [Sus
scrofa].
Length = 551
Score = 229 bits (584), Expect = 2e-60
Identities = 126/293 (43%), Positives = 185/293 (63%), Gaps = 2/293 (0%)
Frame = +1
Query: 193 KGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSIS 372
KGA S+V RC +K + + YA K++ D + + E + L HPNI++L +
Sbjct: 132 KGATSIVYRCKQKGTQKPYALKVLK----KTVDKKIVRTEIGVLLRLSHPNIIKLKEIFE 187
Query: 373 EEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPEN 552
LV +LVTGGELF+ IV + YYSE DA+ + QILE+V ++H++ IVHRDLKPEN
Sbjct: 188 TPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPEN 247
Query: 553 LLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACG 732
LL A+ A +K+ADFGL+ ++ Q GTPGY +PE+LR YG VD+W+ G
Sbjct: 248 LLYATPAPDAPLKIADFGLS-KIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVG 306
Query: 733 VILYILLVGYPPFWDE--DQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAK 906
+I YILL G+ PF+DE DQ ++++I Y F SP WD V+ AK+L+ +++ ++P K
Sbjct: 307 IITYILLCGFEPFYDERGDQF-MFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKK 365
Query: 907 RITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGAILTTMLVSR 1065
R+T QAL+HPWV ++ A+ +H + L++FNAR+KLK A+ + SR
Sbjct: 366 RLTTFQALQHPWVTGKA--ANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSR 416
>ref|NP_001182295.1| calcium/calmodulin-dependent protein kinase type 1B [Sus scrofa].
Length = 343
Score = 223 bits (568), Expect = 1e-58
Identities = 118/260 (45%), Positives = 163/260 (62%), Gaps = 1/260 (0%)
Frame = +1
Query: 169 YQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 348
Y++ E+LG GAFS V ++ S+ A K I K L ++ +E E + R + HPNI
Sbjct: 15 YEIREKLGSGAFSEVVLAQERGSSHLVALKCIPKKALRGKE-ALVENEIAVLRRVSHPNI 73
Query: 349 VRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV 528
V L D YL +LVTGGELF+ I+ R Y+E DASH + Q+L +V+++H IV
Sbjct: 74 VALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAVSYLHSLGIV 133
Query: 529 HRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFA-GTPGYLSPEVLRKDPYG 705
HRDLKPENLL A+ + + + ++DFGL+ G G A GTPGY++PE+L + PYG
Sbjct: 134 HRDLKPENLLYATPFEDSKIMVSDFGLSKIQAGNM---LGTACGTPGYVAPELLEQKPYG 190
Query: 706 KPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQM 885
K VD+WA VI YILL GYPPF+DE +L+ QI +Y+F SP WD ++ AK+ I +
Sbjct: 191 KAVDVWALXVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESAKDFIRHL 250
Query: 886 LTINPAKRITADQALKHPWV 945
L +P KR T QAL+H W+
Sbjct: 251 LERDPQKRFTCQQALQHLWI 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,473,004
Number of extensions: 617234
Number of successful extensions: 3218
Number of sequences better than 1.0e-05: 418
Number of HSP's gapped: 2446
Number of HSP's successfully gapped: 437
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013001
(1079 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034228.1| calcium/calmodulin-dependent protein kinase ... 645 0.0
Alignment gi|NP_001034227.1| calcium/calmodulin-dependent protein kinase ... 645 0.0
Alignment gi|NP_848712.2| calcium/calmodulin-dependent protein kinase typ... 645 0.0
Alignment gi|NP_076302.1| calcium/calmodulin-dependent protein kinase typ... 598 e-171
Alignment gi|NP_001020609.1| calcium/calmodulin-dependent protein kinase ... 598 e-171
Alignment gi|NP_031621.3| calcium/calmodulin-dependent protein kinase typ... 597 e-171
Alignment gi|NP_001167524.1| calcium/calmodulin-dependent protein kinase ... 595 e-170
Alignment gi|NP_001020610.1| calcium/calmodulin-dependent protein kinase ... 594 e-170
Alignment gi|NP_001167525.1| calcium/calmodulin-dependent protein kinase ... 587 e-168
Alignment gi|NP_803126.1| calcium/calmodulin-dependent protein kinase typ... 577 e-165
>ref|NP_001034228.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 3 [Mus musculus].
Length = 495
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_001034227.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 2 [Mus musculus].
Length = 518
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_848712.2| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 1 [Mus musculus].
Length = 529
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_076302.1| calcium/calmodulin-dependent protein kinase type II subunit delta
isoform 3 [Mus musculus].
Length = 478
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_001020609.1| calcium/calmodulin-dependent protein kinase type II subunit delta
isoform 2 [Mus musculus].
Length = 499
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_031621.3| calcium/calmodulin-dependent protein kinase type II subunit beta
isoform 2 [Mus musculus].
Length = 542
Score = 597 bits (1539), Expect = e-171
Identities = 289/316 (91%), Positives = 302/316 (95%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATT TCTRFTD+YQL+E++GKGAFSVVRRCVK + EYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTVTCTRFTDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKH NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LE+V H HQ +VHRDLKPENLLLASKCKGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRK+ YGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITA +ALKHPWVCQRSTVASMMHRQETVECL+KFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTML +RNFSV
Sbjct: 301 KGAILTTMLATRNFSV 316
>ref|NP_001167524.1| calcium/calmodulin-dependent protein kinase type II subunit beta
isoform 1 [Mus musculus].
Length = 545
Score = 595 bits (1535), Expect = e-170
Identities = 288/315 (91%), Positives = 301/315 (95%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATT TCTRFTD+YQL+E++GKGAFSVVRRCVK + EYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTVTCTRFTDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKH NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LE+V H HQ +VHRDLKPENLLLASKCKGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRK+ YGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITA +ALKHPWVCQRSTVASMMHRQETVECL+KFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_001020610.1| calcium/calmodulin-dependent protein kinase type II subunit delta
isoform 1 [Mus musculus].
Length = 512
Score = 594 bits (1532), Expect = e-170
Identities = 286/315 (90%), Positives = 303/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LE+V H HQ +VHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LEAVLHCHQMGVVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_001167525.1| calcium/calmodulin-dependent protein kinase type II subunit beta
isoform 3 [Mus musculus].
Length = 529
Score = 587 bits (1513), Expect = e-168
Identities = 288/326 (88%), Positives = 301/326 (92%), Gaps = 11/326 (3%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATT TCTRFTD+YQL+E++GKGAFSVVRRCVK + EYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTVTCTRFTDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKH NIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LE+V H HQ +VHRDLKPENLLLASKCKGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWAC-----------GVILYILLVGYPPFWDEDQHKLYQQIKAG 816
LSPEVLRK+ YGKPVDIWAC GVILYILLVGYPPFWDEDQHKLYQQIKAG
Sbjct: 181 LSPEVLRKEAYGKPVDIWACGHYVCLPVLIIGVILYILLVGYPPFWDEDQHKLYQQIKAG 240
Query: 817 AYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVE 996
AYDFPSPEWDTVTPEAKNLINQMLTINPAKRITA +ALKHPWVCQRSTVASMMHRQETVE
Sbjct: 241 AYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVE 300
Query: 997 CLRKFNARKKLKGAILTTMLVSRNFS 1074
CL+KFNAR+KLKGAILTTML +RNFS
Sbjct: 301 CLKKFNARRKLKGAILTTMLATRNFS 326
>ref|NP_803126.1| calcium/calmodulin-dependent protein kinase type II subunit alpha
isoform 2 [Mus musculus].
Length = 478
Score = 577 bits (1488), Expect = e-165
Identities = 278/312 (89%), Positives = 296/312 (94%)
Frame = +1
Query: 139 TATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREAR 318
T TCTRFT++YQLFEELGKGAFSVVRRCVK + QEYAAKIINTKKLSARDHQKLEREAR
Sbjct: 3 TITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREAR 62
Query: 319 ICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILES 498
ICRLLKHPNIVRLHDSISEEG HYL+FDLVTGGELFEDIVAREYYSEADASHCI QILE+
Sbjct: 63 ICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEA 122
Query: 499 VNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSP 678
V H HQ +VHRDLKPENLLLASK KGAAVKLADFGLAIEV+GEQQAWFGFAGTPGYLSP
Sbjct: 123 VLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSP 182
Query: 679 EVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTP 858
EVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDTVTP
Sbjct: 183 EVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTP 242
Query: 859 EAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKLKGA 1038
EAK+LIN+MLTINP+KRITA +ALKHPW+ RSTVAS MHRQETV+CL+KFNAR+KLKGA
Sbjct: 243 EAKDLINKMLTINPSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGA 302
Query: 1039 ILTTMLVSRNFS 1074
ILTTML +RNFS
Sbjct: 303 ILTTMLATRNFS 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,158,544
Number of extensions: 832282
Number of successful extensions: 4788
Number of sequences better than 1.0e-05: 646
Number of HSP's gapped: 3461
Number of HSP's successfully gapped: 663
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013001
(1079 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_751909.1| calcium/calmodulin-dependent protein kinase typ... 647 0.0
Alignment gi|NP_001191421.1| calcium/calmodulin-dependent protein kinase ... 647 0.0
Alignment gi|NP_751913.1| calcium/calmodulin-dependent protein kinase typ... 645 0.0
Alignment gi|NP_751911.1| calcium/calmodulin-dependent protein kinase typ... 645 0.0
Alignment gi|NP_751910.1| calcium/calmodulin-dependent protein kinase typ... 645 0.0
Alignment gi|NP_001213.2| calcium/calmodulin-dependent protein kinase typ... 645 0.0
Alignment gi|NP_742127.1| calcium/calmodulin-dependent protein kinase typ... 598 e-171
Alignment gi|NP_742113.1| calcium/calmodulin-dependent protein kinase typ... 598 e-171
Alignment gi|NP_742112.1| calcium/calmodulin-dependent protein kinase typ... 598 e-171
Alignment gi|NP_742125.1| calcium/calmodulin-dependent protein kinase typ... 598 e-171
>ref|NP_751909.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 2 [Homo sapiens].
Length = 527
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|NP_001191421.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 7 [Homo sapiens].
Length = 539
Score = 647 bits (1669), Expect = 0.0
Identities = 315/316 (99%), Positives = 316/316 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFSV 1077
KGAILTTMLVSRNFSV
Sbjct: 301 KGAILTTMLVSRNFSV 316
>ref|NP_751913.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 6 [Homo sapiens].
Length = 504
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_751911.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 1 [Homo sapiens].
Length = 556
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_751910.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 3 [Homo sapiens].
Length = 518
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_001213.2| calcium/calmodulin-dependent protein kinase type II subunit gamma
isoform 4 [Homo sapiens].
Length = 495
Score = 645 bits (1665), Expect = 0.0
Identities = 314/315 (99%), Positives = 315/315 (100%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY
Sbjct: 121 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNAR+KL
Sbjct: 241 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTMLVSRNFS
Sbjct: 301 KGAILTTMLVSRNFS 315
>ref|NP_742127.1| calcium/calmodulin-dependent protein kinase type II subunit delta
isoform 4 [Homo sapiens].
Length = 489
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_742113.1| calcium/calmodulin-dependent protein kinase type II subunit delta
isoform 1 [Homo sapiens].
Length = 478
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_742112.1| calcium/calmodulin-dependent protein kinase type II subunit delta
isoform 5 [Homo sapiens].
Length = 492
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
>ref|NP_742125.1| calcium/calmodulin-dependent protein kinase type II subunit delta
isoform 1 [Homo sapiens].
Length = 478
Score = 598 bits (1541), Expect = e-171
Identities = 288/315 (91%), Positives = 304/315 (96%)
Frame = +1
Query: 130 MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLER 309
MA+T TCTRFTD+YQLFEELGKGAFSVVRRC+K + QEYAAKIINTKKLSARDHQKLER
Sbjct: 1 MASTTTCTRFTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLER 60
Query: 310 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQI 489
EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCI QI
Sbjct: 61 EARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQI 120
Query: 490 LESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGY 669
LESVNH H + IVHRDLKPENLLLASK KGAAVKLADFGLAIEVQG+QQAWFGFAGTPGY
Sbjct: 121 LESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGY 180
Query: 670 LSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDT 849
LSPEVLRKDPYGKPVD+WACGVILYILLVGYPPFWDEDQH+LYQQIKAGAYDFPSPEWDT
Sbjct: 181 LSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDT 240
Query: 850 VTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARKKL 1029
VTPEAK+LIN+MLTINPAKRITA +ALKHPW+CQRSTVASMMHRQETV+CL+KFNAR+KL
Sbjct: 241 VTPEAKDLINKMLTINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKL 300
Query: 1030 KGAILTTMLVSRNFS 1074
KGAILTTML +RNFS
Sbjct: 301 KGAILTTMLATRNFS 315
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,051,094
Number of extensions: 989384
Number of successful extensions: 5445
Number of sequences better than 1.0e-05: 764
Number of HSP's gapped: 3971
Number of HSP's successfully gapped: 791
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013001
(1079 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 387 e-105
Sscrofa_Chr08 82 7e-13
Sscrofa_Chr18 70 3e-09
Sscrofa_Chr02 70 3e-09
Sscrofa_Chr13 60 3e-06
>Sscrofa_Chr14
|| Length = 153851969
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 1 tccccggtaaagtctcgcggtgctgccgggctcagccccgtctcctcctcttgctccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82719287 tccccggtaaagtctcgcggtgctgccgggctcagccccgtctcctcctcttgctccctc 82719228
Query: 61 ggccgggcggcggtgactgtgcaccgacgtcggcgcgggctgcaccgccgcgtccgcccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82719227 ggccgggcggcggtgactgtgcaccgacgtcggcgcgggctgcaccgccgcgtccgcccg 82719168
Query: 121 cccgccagcatggccaccaccgccacctgcacccgcttcaccgacgactaccagctcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82719167 cccgccagcatggccaccaccgccacctgcacccgcttcaccgacgactaccagctcttc 82719108
Query: 181 gaggagctcggcaag 195
|||||||||||||||
Sbjct: 82719107 gaggagctcggcaag 82719093
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 826 ttcccatcaccagagtgggacacggtgactcctgaagccaagaacttgatcaaccagatg 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82693214 ttcccatcaccagagtgggacacggtgactcctgaagccaagaacttgatcaaccagatg 82693155
Query: 886 ctgactataaaccccgcaaagcgtatcacagctgaccaggctctcaaacacccatgggtc 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82693154 ctgactataaaccccgcaaagcgtatcacagctgaccaggctctcaaacacccatgggtc 82693095
Query: 946 tgc 948
|||
Sbjct: 82693094 tgc 82693092
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 542 agcctgagaacctgctgctggcgagtaaatgcaagggtgccgccgtcaagctagctgatt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695138 agcctgagaacctgctgctggcgagtaaatgcaagggtgccgccgtcaagctagctgatt 82695079
Query: 602 ttggcctagccatcgaagtacagggagagcaacaggcttggtttggt 648
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695078 ttggcctagccatcgaagtacagggagagcaacaggcttggtttggt 82695032
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 730 ggggtcatcctgtatatcctcctggtgggctaccctcccttttgggatgaggatcagcat 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82694085 ggggtcatcctgtatatcctcctggtgggctaccctcccttttgggatgaggatcagcat 82694026
Query: 790 aagctgtatcaacagatcaaggctggagcctatgac 825
||||||||||||||||||||||||||||||||||||
Sbjct: 82694025 aagctgtatcaacagatcaaggctggagcctatgac 82693990
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 195 gggtgctttctctgtggtccgcaggtgtgtgaagaaaacctccacgcaggaatatgcagc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82717645 gggtgctttctctgtggtccgcaggtgtgtgaagaaaacctccacgcaggaatatgcagc 82717586
Query: 255 aaaaatcatcaataccaagaagttatctgcccggg 289
|||||||||||||||||||||||||||||||||||
Sbjct: 82717585 aaaaatcatcaataccaagaagttatctgcccggg 82717551
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 646 ggttttgctggcaccccaggttacttgtcccctgaggtcttgaggaaagatccctatgga 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82694604 ggttttgctggcaccccaggttacttgtcccctgaggtcttgaggaaagatccctatgga 82694545
Query: 706 aaacctgtggatatctgggcctgcgg 731
||||||||||||||||||||||||||
Sbjct: 82694544 aaacctgtggatatctgggcctgcgg 82694519
Score = 161 bits (81), Expect = 1e-36
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 949 caacggtccacagtggcatctatgatgcatcgtcaagagactgtggagtgcttgcgcaag 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82689262 caacggtccacagtggcatctatgatgcatcgtcaagagactgtggagtgcttgcgcaag 82689203
Query: 1009 ttcaatgcccggaaaaaactaaagg 1033
||||||||||||| |||||||||||
Sbjct: 82689202 ttcaatgcccggagaaaactaaagg 82689178
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 467 ccagccactgtatacatcagattctggagagtgttaaccacatccaccagcatgacatcg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82695358 ccagccactgtatacatcagattctggagagtgttaaccacatccaccagcatgacatcg 82695299
Query: 527 tccaccgggacctgaag 543
|||||||||||||||||
Sbjct: 82695298 tccaccgggacctgaag 82695282
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 405 tgttactggcggggagctgtttgaagacattgtggccagagagtactacagtgaagctga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82697903 tgttactggcggggagctgtttgaagacattgtggccagagagtactacagtgaagctga 82697844
Query: 465 tgccag 470
||||||
Sbjct: 82697843 tgccag 82697838
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 289 gatcaccagaaactagaacgtgaggcccggatatgccgacttttgaaacatccaaacatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82706104 gatcaccagaaactagaacgtgaggcccggatatgccgacttttgaaacatccaaacatt 82706045
Query: 349 g 349
|
Sbjct: 82706044 g 82706044
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 349 gtacgcctccatgacagtatttctgaagaagggtttcactacctcgtgtttgacct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82698833 gtacgcctccatgacagtatttctgaagaagggtttcactacctcgtgtttgacct 82698778
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 1031 agggtgccatccttacgaccatgcttgtctccaggaacttttcag 1075
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82688961 agggtgccatccttacgaccatgcttgtctccaggaacttttcag 82688917
>Sscrofa_Chr08
|| Length = 148491826
Score = 81.8 bits (41), Expect = 7e-13
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 829 ccatcaccagagtgggacacggtgactcctgaagccaagaacttgatcaaccagatgctg 888
||||||||||| |||||||| ||||||||||||||||| || | ||||| | |||||
Sbjct: 117206927 ccatcaccagaatgggacacagtgactcctgaagccaaagacctcatcaataaaatgctt 117206986
Query: 889 actataaaccccgcaaagcgtatcacagc 917
||||| |||||||| ||||||||||||||
Sbjct: 117206987 actatcaaccccgccaagcgtatcacagc 117207015
Score = 73.8 bits (37), Expect = 2e-10
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 406 gttactggcggggagctgtttgaagacattgtggccagagagtactacagtgaagctgat 465
|||||||| || || |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 117174963 gttactggaggtgaactgtttgaagacatagtggcgagagaatattacagtgaagctgat 117175022
Query: 466 gccag 470
|||||
Sbjct: 117175023 gccag 117175027
>Sscrofa_Chr18
|| Length = 61220071
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 409 actggcggggagctgtttgaagacattgtggccagagagtactacag 455
|||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 55829666 actggcggggagctctttgaagacatcgtggcgagagagtactacag 55829620
Score = 65.9 bits (33), Expect = 4e-08
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 129 catggccaccaccgccacctgcacccgcttcaccgacgactaccagctcttcgagga 185
|||||||||||| | || |||||||||||||||||||| |||||||||| ||||||
Sbjct: 55764900 catggccaccacggtgacttgcacccgcttcaccgacgagtaccagctctacgagga 55764956
>Sscrofa_Chr02
|| Length = 162569375
Score = 69.9 bits (35), Expect = 3e-09
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 412 ggcggggagctgtttgaagacattgtggccagagagtactacagtgaagctgatgccag 470
||||||||||||||||| |||||||||||| | ||||| |||||||| || ||||||||
Sbjct: 158144881 ggcggggagctgtttgaggacattgtggcccgcgagtattacagtgaggccgatgccag 158144939
Score = 69.9 bits (35), Expect = 3e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 412 ggcggggagctgtttgaagacattgtggccagagagtactacagtgaagctgatgccag 470
||||||||||||||||| |||||||||||| | ||||| |||||||| || ||||||||
Sbjct: 158368996 ggcggggagctgtttgaggacattgtggcccgcgagtattacagtgaggccgatgccag 158368938
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 144 cacctgcacccgcttcaccgacgactaccagctcttcgagga 185
|||||||||||||||||| || || |||||||||||||||||
Sbjct: 158033087 cacctgcacccgcttcacggaagagtaccagctcttcgagga 158033128
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 144 cacctgcacccgcttcaccgacgactaccagctcttcgagga 185
|||||||||||||||||| || || |||||||||||||||||
Sbjct: 158396802 cacctgcacccgcttcacggaagagtaccagctcttcgagga 158396761
>Sscrofa_Chr13
|| Length = 218635234
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 521 acatcgtccaccgggacctgaagcctgagaacctgctgctgg 562
||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 216763442 acatcgtccaccgggacctcaagaccgagaacctgctgctgg 216763483
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,743,212
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 21
Length of query: 1079
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1058
Effective length of database: 2,808,413,156
Effective search space: 2971301119048
Effective search space used: 2971301119048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)