Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013008
(1345 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003185.1| rab GDP dissociation inhibitor alpha [Canis ... 682 0.0
Alignment gi|NP_001003184.1| rab GDP dissociation inhibitor beta [Canis l... 604 e-173
Alignment gi|XP_850923.1| PREDICTED: similar to Rab GDP dissociation inhi... 177 2e-44
Alignment gi|XP_863080.1| PREDICTED: similar to Rab proteins geranylgeran... 75 1e-13
Alignment gi|XP_537217.1| PREDICTED: similar to Rab proteins geranylgeran... 75 1e-13
Alignment gi|XP_863055.1| PREDICTED: similar to Rab proteins geranylgeran... 74 3e-13
Alignment gi|XP_538092.2| PREDICTED: similar to Rab proteins geranylgeran... 70 6e-12
>ref|NP_001003185.1| rab GDP dissociation inhibitor alpha [Canis lupus familiaris].
Length = 447
Score = 682 bits (1761), Expect = 0.0
Identities = 344/396 (86%), Positives = 350/396 (88%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSF+YKGGKIYKVP
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKPVDDIIMEN ARCKQLICDPSY+PDRVRKAGQVIRI
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDLYEP+ DGSES
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSES 396
>ref|NP_001003184.1| rab GDP dissociation inhibitor beta [Canis lupus familiaris].
Length = 445
Score = 604 bits (1557), Expect = e-173
Identities = 301/396 (76%), Positives = 329/396 (83%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
M+EEYDVIVLGTGLTECILSGIM+VNGKKVLHMDRNPYYGGES+SITPLE+LYKRF++
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
PP +MGRGRDWN+DLIPKFLMANGQLVKMLLYTEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 APPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STE EALAS+LMG+FEKRRFRKFLV+VANFDE DP+TFEG+DP+ T++ +VY+KFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKP+++II++N ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAI STT ET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETK 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDL P G+ES
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTES 396
>ref|XP_850923.1| PREDICTED: similar to Rab GDP dissociation inhibitor beta (Rab GDI
beta) (GDI-2) [Canis familiaris].
Length = 287
Score = 177 bits (450), Expect = 2e-44
Identities = 88/122 (72%), Positives = 97/122 (79%)
Frame = +2
Query: 959 ARCKQLICDPSYVPDRVRKAGQVIRIICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYV 1138
ARCKQLICDPSYV DRV K GQVIR+IC+LSHPIKNT+DANSCQIIIPQNQVNRKSD+YV
Sbjct: 117 ARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDVYV 176
Query: 1139 CMISYAHNVAAQGKYIAIASTTVETAEPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGS 1318
CMIS AHNVAAQGKYIA+ STTVET +PEKE P+ R ISD+ P G+
Sbjct: 177 CMISSAHNVAAQGKYIAVVSTTVETKDPEKEIRPALELLEPIERKFVSISDVLVPKDLGT 236
Query: 1319 ES 1324
ES
Sbjct: 237 ES 238
>ref|XP_863080.1| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) (REP-2)
(Choroideraemia-like protein) isoform 4 [Canis
familiaris].
Length = 639
Score = 75.5 bits (184), Expect = 1e-13
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 4/250 (1%)
Frame = +2
Query: 242 NPYYGGESSSITPLEE----LYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKML 409
N GG+ P+EE KR ++ + + GR +N+DL+ K L + G L+ +L
Sbjct: 174 NTASGGDKDENKPIEEDNTDQPKRNRITYS--QIVKEGRRFNIDLVSKLLYSQGLLIDLL 231
Query: 410 LYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFD 589
+ + V+RY +FK V ++ GK+ +VP + + S + M EKR KFL F +++
Sbjct: 232 IKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRILMKFLTFCLDYE 291
Query: 590 ENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKL 769
++ P ++ S D + L ++ F H++A+ + ++ + K
Sbjct: 292 QH-PDQYQAF--VHCSFSDYLKTKKLTPNLQHFVLHSIAMTES----SCTTIDGLKATKN 344
Query: 770 YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGTYMLNKPVDDIIMENXXXXXXXXX 949
+ L R F R+ A++GG Y L V +I++
Sbjct: 345 FLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHKVQCLIVDK--------- 395
Query: 950 XXXARCKQLI 979
RCK +I
Sbjct: 396 -ESGRCKAII 404
Score = 50.8 bits (120), Expect = 3e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 134 TMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
++ E+DV+++GTGL E IL+ S +G++VLH+D YYGG +S +
Sbjct: 4 SLPTEFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|XP_537217.1| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) (REP-2)
(Choroideraemia-like protein) isoform 1 [Canis
familiaris].
Length = 651
Score = 75.5 bits (184), Expect = 1e-13
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 4/250 (1%)
Frame = +2
Query: 242 NPYYGGESSSITPLEE----LYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKML 409
N GG+ P+EE KR ++ + + GR +N+DL+ K L + G L+ +L
Sbjct: 186 NTASGGDKDENKPIEEDNTDQPKRNRITYS--QIVKEGRRFNIDLVSKLLYSQGLLIDLL 243
Query: 410 LYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFD 589
+ + V+RY +FK V ++ GK+ +VP + + S + M EKR KFL F +++
Sbjct: 244 IKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRILMKFLTFCLDYE 303
Query: 590 ENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKL 769
++ P ++ S D + L ++ F H++A+ + ++ + K
Sbjct: 304 QH-PDQYQAF--VHCSFSDYLKTKKLTPNLQHFVLHSIAMTES----SCTTIDGLKATKN 356
Query: 770 YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGTYMLNKPVDDIIMENXXXXXXXXX 949
+ L R F R+ A++GG Y L V +I++
Sbjct: 357 FLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHKVQCLIVDK--------- 407
Query: 950 XXXARCKQLI 979
RCK +I
Sbjct: 408 -ESGRCKAII 416
Score = 50.8 bits (120), Expect = 3e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 134 TMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
++ E+DV+++GTGL E IL+ S +G++VLH+D YYGG +S +
Sbjct: 4 SLPTEFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|XP_863055.1| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) (REP-2)
(Choroideraemia-like protein) isoform 3 [Canis
familiaris].
Length = 619
Score = 73.9 bits (180), Expect = 3e-13
Identities = 52/213 (24%), Positives = 94/213 (44%)
Frame = +2
Query: 341 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 520
GR +N+DL+ K L + G L+ +L+ + V+RY +FK V ++ GK+ +VP + +
Sbjct: 189 GRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFN 248
Query: 521 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHA 700
S + M EKR KFL F +++++ P ++ S D + L ++ F H+
Sbjct: 249 SKELTMVEKRILMKFLTFCLDYEQH-PDQYQAF--VHCSFSDYLKTKKLTPNLQHFVLHS 305
Query: 701 LALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 880
+A+ + ++ + K + L R F R+ A++GG
Sbjct: 306 IAMTES----SCTTIDGLKATKNFLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVFGGI 361
Query: 881 YMLNKPVDDIIMENXXXXXXXXXXXXARCKQLI 979
Y L V +I++ RCK +I
Sbjct: 362 YCLRHKVQCLIVDK----------ESGRCKAII 384
Score = 50.8 bits (120), Expect = 3e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 134 TMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
++ E+DV+++GTGL E IL+ S +G++VLH+D YYGG +S +
Sbjct: 4 SLPTEFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|XP_538092.2| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 1 (Rab escort protein 1) (REP-1)
(Choroideraemia protein) (TCD protein) [Canis
familiaris].
Length = 652
Score = 69.7 bits (169), Expect = 6e-12
Identities = 45/193 (23%), Positives = 88/193 (45%)
Frame = +2
Query: 341 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 520
GR +N+DL+ K L + G L+ +L+ + V+RY +FK + ++ G++ +VP + +
Sbjct: 223 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 282
Query: 521 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHA 700
S + M EKR KFL F + E P ++ + + + + L ++ F H+
Sbjct: 283 SKQLTMVEKRMLMKFLTFCMEY-EKHPDEYKAY--EEITFSEYLKTQKLTPNLQYFVLHS 339
Query: 701 LALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 880
+A+ T + ++ + K + L R F R+ A++GG
Sbjct: 340 IAM--TSETASN-TIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 396
Query: 881 YMLNKPVDDIIME 919
Y L V ++++
Sbjct: 397 YCLRHSVQCLVVD 409
Score = 50.4 bits (119), Expect = 4e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
+ E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S +
Sbjct: 5 LPSEFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,600,049
Number of extensions: 1186887
Number of successful extensions: 4685
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4658
Number of HSP's successfully gapped: 11
Length of query: 448
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 342
Effective length of database: 15,340,888
Effective search space: 5246583696
Effective search space used: 5246583696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013008
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013008
(1345 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776489.1| rab GDP dissociation inhibitor alpha [Bos tauru... 678 0.0
Alignment gi|NP_001028934.1| rab GDP dissociation inhibitor beta [Bos tau... 617 e-177
Alignment gi|XP_002694003.1| PREDICTED: choroideremia-like [Bos taurus]. 75 1e-13
Alignment gi|XP_610836.1| PREDICTED: choroideremia [Bos taurus]. 75 1e-13
Alignment gi|NP_001192318.1| rab proteins geranylgeranyltransferase compo... 74 2e-13
>ref|NP_776489.1| rab GDP dissociation inhibitor alpha [Bos taurus].
Length = 447
Score = 678 bits (1749), Expect = 0.0
Identities = 342/396 (86%), Positives = 348/396 (87%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
GPPE MGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
Sbjct: 61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQ+TSMRDVYRKFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKPVDDIIMEN ARCKQLICDPSYVPDRVRKAGQVIRI
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
+PEKE P+ + ISDLYEP+ DGSES
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSES 396
>ref|NP_001028934.1| rab GDP dissociation inhibitor beta [Bos taurus].
Length = 445
Score = 617 bits (1591), Expect = e-177
Identities = 309/396 (78%), Positives = 333/396 (84%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF++
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
PP +MGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STE EALAS+LMG+FEKRRFRKFLV+VANFDENDP+TFEG+DP+ TSMR+VY+KFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKP+++IIM+N ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPIEEIIMQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDL P G+ES
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTES 396
>ref|XP_002694003.1| PREDICTED: choroideremia-like [Bos taurus].
Length = 651
Score = 75.1 bits (183), Expect = 1e-13
Identities = 59/286 (20%), Positives = 119/286 (41%), Gaps = 6/286 (2%)
Frame = +2
Query: 260 ESSSITPLEELYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLD 439
E +S+ P + Q+++ GR +N+DL K L + G L+ +L+ + V+RY +
Sbjct: 201 EDNSVPPKRKRIAYSQIVK-------EGRRFNIDLSSKLLYSQGLLIDLLIKSNVSRYAE 253
Query: 440 FKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV 619
FK V ++ GK+ +VP + + S + M EKR KFL F +++++ P+ ++
Sbjct: 254 FKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLDYEQH-PEEYQAF 312
Query: 620 DPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXX 799
S + + +L + F H++A+ ++ + K + + L R
Sbjct: 313 --TQCSFSEYLKTKNLTPSLQHFILHSIAMMSESSC---TTVDGLKATKTFLQCLGRFGN 367
Query: 800 XXXXXXXXXXXXXXXXFARLSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXAR---CK 970
F R+ A++GG Y L V ++++ + K
Sbjct: 368 TPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHKVQCLVVDRESGRCKAIIDHLGQRINAK 427
Query: 971 QLICDPSYVPDRVRKA---GQVIRIICLLSHPIKNTNDANSCQIII 1099
I + SY+ + + Q+ R + + + T+ I+I
Sbjct: 428 YFIVEDSYLSEETCSSVQYKQISRAVLITDQSVLKTDSDQQISILI 473
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 134 TMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
++ E+DVIV+GTGL E IL+ S +G++VLH+D YYGG +S +
Sbjct: 4 SLPTEFDVIVMGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|XP_610836.1| PREDICTED: choroideremia [Bos taurus].
Length = 651
Score = 75.1 bits (183), Expect = 1e-13
Identities = 59/286 (20%), Positives = 119/286 (41%), Gaps = 6/286 (2%)
Frame = +2
Query: 260 ESSSITPLEELYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLD 439
E +S+ P + Q+++ GR +N+DL K L + G L+ +L+ + V+RY +
Sbjct: 201 EDNSVPPKRKRIAYSQIVK-------EGRRFNIDLSSKLLYSQGLLIDLLIKSNVSRYAE 253
Query: 440 FKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGV 619
FK V ++ GK+ +VP + + S + M EKR KFL F +++++ P+ ++
Sbjct: 254 FKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLDYEQH-PEEYQAF 312
Query: 620 DPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXX 799
S + + +L + F H++A+ ++ + K + + L R
Sbjct: 313 --TQCSFSEYLKTKNLTPSLQHFILHSIAMMSESSC---TTVDGLKATKTFLQCLGRFGN 367
Query: 800 XXXXXXXXXXXXXXXXFARLSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXAR---CK 970
F R+ A++GG Y L V ++++ + K
Sbjct: 368 TPFLFPLYGQGEIPQCFCRMCAVFGGIYCLRHKVQCLVVDRESGRCKAIIDHLGQRINAK 427
Query: 971 QLICDPSYVPDRVRKA---GQVIRIICLLSHPIKNTNDANSCQIII 1099
I + SY+ + + Q+ R + + + T+ I+I
Sbjct: 428 YFIVEDSYLSEETCSSVQYKQISRAVLITDQSVLKTDSDQQISILI 473
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 134 TMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
++ E+DVIV+GTGL E IL+ S +G++VLH+D YYGG +S +
Sbjct: 4 SLPTEFDVIVMGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|NP_001192318.1| rab proteins geranylgeranyltransferase component A 1 [Bos taurus].
Length = 653
Score = 74.3 bits (181), Expect = 2e-13
Identities = 60/304 (19%), Positives = 125/304 (41%), Gaps = 7/304 (2%)
Frame = +2
Query: 341 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 520
GR +N+DL+ K L + G L+ +L+ + V+RY +FK + ++ G++ +VP + +
Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVKQVPCSRADVFN 283
Query: 521 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHA 700
S + M EKR KFL F ++E+ P ++ + + + + L ++ F H+
Sbjct: 284 SKQLTMVEKRMLMKFLTFCMEYEEH-PDEYKAY--EEITFSEYLKTQKLTPNLQYFVLHS 340
Query: 701 LALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 880
+A+ ++ + K + SL R F R+ A++GG
Sbjct: 341 MAM---TSETGSSTIDGLKATKNFLHSLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 397
Query: 881 YMLNKPVDDIIMENXXXXXXXXXXXXAR---CKQLICDPSYVPDRV---RKAGQVIRIIC 1042
Y L V ++++ + K + + SY+ + + Q+ R I
Sbjct: 398 YCLRHSVQCLVVDKESGKCKAIIDQYGQRIISKHFLVEDSYLSENTCAHVQYRQISRAIL 457
Query: 1043 LLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIA-IASTTVETAE 1219
+ + T+ I+ + + V + + +G Y+ + T+ +TA
Sbjct: 458 ITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGSYLVHLTCTSSKTAR 517
Query: 1220 PEKE 1231
+ E
Sbjct: 518 EDLE 521
Score = 50.4 bits (119), Expect = 4e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
+ E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S +
Sbjct: 5 LPSEFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,751,320
Number of extensions: 1191211
Number of successful extensions: 4455
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4436
Number of HSP's successfully gapped: 8
Length of query: 448
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 343
Effective length of database: 14,207,134
Effective search space: 4873046962
Effective search space used: 4873046962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013008
(1345 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360570.1| PREDICTED: rab GDP dissociation inhibitor al... 684 0.0
Alignment gi|NP_001001643.1| rab GDP dissociation inhibitor beta [Sus scr... 611 e-175
Alignment gi|XP_003360571.1| PREDICTED: rab GDP dissociation inhibitor al... 570 e-163
Alignment gi|XP_003357684.1| PREDICTED: rab proteins geranylgeranyltransf... 74 2e-13
Alignment gi|XP_003135267.2| PREDICTED: rab proteins geranylgeranyltransf... 72 5e-13
>ref|XP_003360570.1| PREDICTED: rab GDP dissociation inhibitor alpha-like isoform 1 [Sus
scrofa].
Length = 447
Score = 684 bits (1764), Expect = 0.0
Identities = 347/396 (87%), Positives = 350/396 (88%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKPVDDIIMEN ARCKQLICDPSYVPDRVRKAGQVIRI
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDLYEPV DGSES
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSES 396
>ref|NP_001001643.1| rab GDP dissociation inhibitor beta [Sus scrofa].
Length = 445
Score = 611 bits (1576), Expect = e-175
Identities = 306/396 (77%), Positives = 332/396 (83%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF +
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
PP +MGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STE EALAS+LMG+FEKRRFRKFLV+VANFDENDP+TFEGVDP+ T+MR+VY+KFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKP+++II++N ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDL P G++S
Sbjct: 361 EPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDS 396
>ref|XP_003360571.1| PREDICTED: rab GDP dissociation inhibitor alpha-like isoform 2 [Sus
scrofa].
Length = 402
Score = 570 bits (1470), Expect = e-163
Identities = 299/396 (75%), Positives = 305/396 (77%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
GPPEAMGRGRDWNVDLIPKFL
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFL--------------------------------------- 81
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
+A++LMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD
Sbjct: 82 ------MANDLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 135
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLAR FAR
Sbjct: 136 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 195
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKPVDDIIMEN ARCKQLICDPSYVPDRVRKAGQVIRI
Sbjct: 196 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 255
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA
Sbjct: 256 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 315
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDLYEPV DGSES
Sbjct: 316 EPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSES 351
>ref|XP_003357684.1| PREDICTED: rab proteins geranylgeranyltransferase component A 2
[Sus scrofa].
Length = 653
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 4/246 (1%)
Frame = +2
Query: 254 GGESSSITPLEELY----KRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTE 421
GG I P+ E + KR ++ + + R +N+DL+ K L + G L+ +L+ +
Sbjct: 192 GGTKDGIRPILEDHGDPPKRKRITYA--QIVKESRRFNIDLVSKLLYSQGLLIDLLIKSN 249
Query: 422 VTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDP 601
V+RY +FK V ++ GK+ +VP + + S + M EKR KFL F ++ E P
Sbjct: 250 VSRYAEFKNVTRILAFREGKVEQVPCSRADVFNSKALTMVEKRMLMKFLTFCLDY-ERHP 308
Query: 602 KTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSES 781
++ D S + + L + F H++A+ ++ + K + +
Sbjct: 309 DEYQ--DFMQCSFSEYLKAKKLTPSLQHFVLHSIAMTSESSC---TTIDGLKATKNFLQC 363
Query: 782 LARXXXXXXXXXXXXXXXXXXXFARLSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXA 961
L R F R+ A++GG Y L V ++++
Sbjct: 364 LGRFGNTPFLFPLYGQGEVPQCFCRMCAVFGGIYCLRHKVQCLVVDK----------ESG 413
Query: 962 RCKQLI 979
RCK +I
Sbjct: 414 RCKAII 419
>ref|XP_003135267.2| PREDICTED: rab proteins geranylgeranyltransferase component A 1
[Sus scrofa].
Length = 653
Score = 72.4 bits (176), Expect = 5e-13
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 5/198 (2%)
Frame = +2
Query: 341 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 520
GR +N+DL+ K L + G L+ +L+ + V+RY +FK + ++ G++ +VP + +
Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 283
Query: 521 SNLMGMFEKRRFRKFLVFVANFDE--NDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTG 694
S + M EKR KFL F +++E ++ K +E + S + + L ++ F
Sbjct: 284 SKQLTMVEKRMLMKFLTFCMDYEEYPDEYKAYEEI-----SFSEYLKTQKLTPNLQYFVL 338
Query: 695 HALALYRTDDYLDQPCLETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSA 865
H++A+ + TI+ +K + L R F R+ A
Sbjct: 339 HSIAM------TSETASSTIDGLKATQNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCA 392
Query: 866 IYGGTYMLNKPVDDIIME 919
++GG Y L V ++++
Sbjct: 393 VFGGIYCLRHSVQCLVVD 410
Score = 50.4 bits (119), Expect = 2e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
+ E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S +
Sbjct: 5 LPSEFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,672,479
Number of extensions: 833461
Number of successful extensions: 2899
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2889
Number of HSP's successfully gapped: 7
Length of query: 448
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,804,438
Effective search space: 3046335548
Effective search space used: 3046335548
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013008
(1345 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034403.1| rab GDP dissociation inhibitor alpha [Mus muscu... 678 0.0
Alignment gi|NP_032138.3| rab GDP dissociation inhibitor beta [Mus muscul... 613 e-176
Alignment gi|NP_067325.2| rab proteins geranylgeranyltransferase componen... 75 1e-13
Alignment gi|NP_061288.2| rab proteins geranylgeranyltransferase componen... 73 6e-13
>ref|NP_034403.1| rab GDP dissociation inhibitor alpha [Mus musculus].
Length = 447
Score = 678 bits (1750), Expect = 0.0
Identities = 341/396 (86%), Positives = 350/396 (88%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQ+LE
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
GPPE+MGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQ+TSMRDVYRKFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKPVDDIIMEN ARCKQLICDPSY+PDRV+KAGQVIRI
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRI 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDLYEP+ DGSES
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSES 396
>ref|NP_032138.3| rab GDP dissociation inhibitor beta [Mus musculus].
Length = 445
Score = 613 bits (1582), Expect = e-176
Identities = 305/396 (77%), Positives = 334/396 (84%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMD+NPYYGGES+SITPLE+LYKRF+L
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
PP +MGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRY+DFKV+EGSFVYKGGKIYKVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STE EALAS+LMG+FEKRRFRKFLV+VANFDE DP+TFEGVDP+ TSMRDVY+KFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGH+LALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKP+++II++N ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS+AHNVAAQGKYIAI STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDL+ P G++S
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDS 396
>ref|NP_067325.2| rab proteins geranylgeranyltransferase component A 2 [Mus musculus].
Length = 621
Score = 75.1 bits (183), Expect = 1e-13
Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 6/258 (2%)
Frame = +2
Query: 344 RDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALAS 523
R +N+DL+ K L + G L+ +L+ + V+RY +FK V + GK+ +VP + + S
Sbjct: 226 RRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKNVTRILAFWEGKVEQVPCSRADVFNS 285
Query: 524 NLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHAL 703
+ M EKR KFL F +++++ E D + S D + L ++ F H++
Sbjct: 286 KELSMVEKRMLMKFLTFCLDYEQHSD---EYQDFKQCSFSDYLKTKKLTPNLQHFILHSI 342
Query: 704 ALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGTY 883
A+ L+ + K + + L R F R+ A++GG Y
Sbjct: 343 AMTSESSC---TTLDGLQATKTFLQCLGRFGNTPFIFPLYGHGEIPQCFCRMCAVFGGVY 399
Query: 884 MLNKPVDDIIMENXXXXXXXXXXXXAR---CKQLICDPSYVPDRV---RKAGQVIRIICL 1045
L V ++++ + I + SY+P + Q+ R + +
Sbjct: 400 CLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRAVLI 459
Query: 1046 LSHPIKNTNDANSCQIII 1099
I T+ I++
Sbjct: 460 TDQSILKTDSDQQISILV 477
Score = 52.8 bits (125), Expect = 6e-07
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +2
Query: 146 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGE--SSSITPLEELYKRFQ 307
E+DV+++GTGL E IL+ S +G++VLH+D YYGG S S T L+ K +Q
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFSFTGLQSWLKDYQ 63
>ref|NP_061288.2| rab proteins geranylgeranyltransferase component A 1 [Mus
musculus].
Length = 662
Score = 72.8 bits (177), Expect = 6e-13
Identities = 45/193 (23%), Positives = 88/193 (45%)
Frame = +2
Query: 341 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 520
GR +N+DL+ K L + G L+ +L+ + V+RY +FK + ++ G + +VP + +
Sbjct: 233 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFN 292
Query: 521 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHA 700
S + M EKR KFL F + E+ P ++ + T+ + + L ++ F H+
Sbjct: 293 SKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAY--EETTFSEYLKTQKLTPNLQYFVLHS 349
Query: 701 LALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 880
+A+ ++ + K + + L R F R+ A++GG
Sbjct: 350 IAM---TSETTSSTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 406
Query: 881 YMLNKPVDDIIME 919
Y L V ++++
Sbjct: 407 YCLRHSVQCLVVD 419
Score = 49.3 bits (116), Expect = 7e-06
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
+ ++DVIV+GTGL E I++ S +G++VLH+D YYGG +S +
Sbjct: 5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,476,504
Number of extensions: 954481
Number of successful extensions: 3661
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3648
Number of HSP's successfully gapped: 6
Length of query: 448
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 343
Effective length of database: 12,463,779
Effective search space: 4275076197
Effective search space used: 4275076197
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013008
(1345 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001484.1| rab GDP dissociation inhibitor alpha [Homo sapi... 676 0.0
Alignment gi|NP_001485.2| rab GDP dissociation inhibitor beta isoform 1 [... 618 e-177
Alignment gi|NP_001108628.1| rab GDP dissociation inhibitor beta isoform ... 515 e-146
Alignment gi|NP_001812.2| rab proteins geranylgeranyltransferase componen... 78 2e-14
Alignment gi|NP_000381.1| rab proteins geranylgeranyltransferase componen... 72 2e-12
Alignment gi|NP_001138886.1| rab proteins geranylgeranyltransferase compo... 53 7e-07
>ref|NP_001484.1| rab GDP dissociation inhibitor alpha [Homo sapiens].
Length = 447
Score = 676 bits (1743), Expect = 0.0
Identities = 339/396 (85%), Positives = 348/396 (87%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
GPPE+MGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQ+TSMRDVYRKFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPCLET+NRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKPVDDIIMEN ARCKQLICDPSY+PDRVRKAGQVIRI
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
+PEKE P+ + ISDLYEP+ DG ES
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCES 396
>ref|NP_001485.2| rab GDP dissociation inhibitor beta isoform 1 [Homo sapiens].
Length = 445
Score = 618 bits (1593), Expect = e-177
Identities = 308/396 (77%), Positives = 333/396 (84%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF++
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
PPE+MGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
STE EALAS+LMG+FEKRRFRKFLV+VANFDE DP+TFEG+DP+ T+MRDVY+KFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKP+++II++N ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS+AHNVAAQGKYIAI STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDL P G+ES
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTES 396
>ref|NP_001108628.1| rab GDP dissociation inhibitor beta isoform 2 [Homo sapiens].
Length = 400
Score = 515 bits (1326), Expect = e-146
Identities = 266/396 (67%), Positives = 290/396 (73%)
Frame = +2
Query: 137 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 316
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF++
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 317 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 496
PPE+MGRGRDWNVDLIPKFLMANG
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANG----------------------------------- 85
Query: 497 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 676
LMG+FEKRRFRKFLV+VANFDE DP+TFEG+DP+ T+MRDVY+KFDLGQD
Sbjct: 86 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 135
Query: 677 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 856
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 136 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 195
Query: 857 LSAIYGGTYMLNKPVDDIIMENXXXXXXXXXXXXARCKQLICDPSYVPDRVRKAGQVIRI 1036
LSAIYGGTYMLNKP+++II++N ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 196 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 255
Query: 1037 ICLLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 1216
IC+LSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMIS+AHNVAAQGKYIAI STTVET
Sbjct: 256 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 315
Query: 1217 EPEKESSRPWSCWSPLTRSSWPISDLYEPVGDGSES 1324
EPEKE P+ + ISDL P G+ES
Sbjct: 316 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTES 351
>ref|NP_001812.2| rab proteins geranylgeranyltransferase component A 2 [Homo sapiens].
Length = 656
Score = 77.8 bits (190), Expect = 2e-14
Identities = 58/261 (22%), Positives = 114/261 (43%), Gaps = 7/261 (2%)
Frame = +2
Query: 341 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 520
GR +N+DL+ K L + G L+ +L+ ++V+RY++FK V ++ GK+ +VP + +
Sbjct: 226 GRRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFN 285
Query: 521 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHA 700
S + M EKR KFL F ++++ P ++ + S + + L ++ F H+
Sbjct: 286 SKELTMVEKRMLMKFLTFCLEYEQH-PDEYQAF--RQCSFSEYLKTKKLTPNLQHFVLHS 342
Query: 701 LALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 880
+A+ ++ +N K + + L R F R+ A++GG
Sbjct: 343 IAMTSESSC---TTIDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399
Query: 881 YMLNKPVDDIIMENXXXXXXXXXXXXAR---CKQLICDPSYVPDRV---RKAGQVIRIIC 1042
Y L V +++ + K I + SY+ + + Q+ R +
Sbjct: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVL 459
Query: 1043 LLSHPIKNTN-DANSCQIIIP 1102
+ I T+ D + +I+P
Sbjct: 460 ITDQSILKTDLDQQTSILIVP 480
Score = 50.1 bits (118), Expect = 5e-06
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +2
Query: 146 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
E+DV+++GTGL E IL+ S +G++VLH+D YYGG +S +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51
>ref|NP_000381.1| rab proteins geranylgeranyltransferase component A 1 isoform a [Homo
sapiens].
Length = 653
Score = 71.6 bits (174), Expect = 2e-12
Identities = 59/305 (19%), Positives = 124/305 (40%), Gaps = 7/305 (2%)
Frame = +2
Query: 341 GRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALA 520
GR +N+DL+ K L + G L+ +L+ + V+RY +FK + ++ G++ +VP + +
Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 283
Query: 521 SNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHA 700
S + M EKR KFL F + E P ++G + + + + L ++ H+
Sbjct: 284 SKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGY--EEITFYEYLKTQKLTPNLQYIVMHS 340
Query: 701 LALYRTDDYLDQPCLETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 880
+A+ ++ + K + L R F R+ A++GG
Sbjct: 341 IAM---TSETASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 397
Query: 881 YMLNKPVDDIIMENXXXXXXXXXXXXAR---CKQLICDPSYVPDRV---RKAGQVIRIIC 1042
Y L V ++++ + + + + SY P+ + + Q+ R +
Sbjct: 398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAVL 457
Query: 1043 LLSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIA-IASTTVETAE 1219
+ + T+ I+ + + V + + +G Y+ + T+ +TA
Sbjct: 458 ITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCTSSKTAR 517
Query: 1220 PEKES 1234
+ ES
Sbjct: 518 EDLES 522
Score = 52.8 bits (125), Expect = 7e-07
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 134 TMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
T+ E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S +
Sbjct: 4 TLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
>ref|NP_001138886.1| rab proteins geranylgeranyltransferase component A 1 isoform b
[Homo sapiens].
Length = 110
Score = 52.8 bits (125), Expect = 7e-07
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +2
Query: 134 TMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT 277
T+ E+DVIV+GTGL E I++ S +G++VLH+D YYGG +S +
Sbjct: 4 TLPSEFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,528,246
Number of extensions: 1155617
Number of successful extensions: 4355
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4340
Number of HSP's successfully gapped: 9
Length of query: 448
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 342
Effective length of database: 14,802,980
Effective search space: 5062619160
Effective search space used: 5062619160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013008
(1345 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 394 e-107
Sscrofa_Chr10 170 1e-39
>Sscrofa_ChrX
|| Length = 144288218
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Minus
Query: 525 atctgatgggcatgtttgagaagcggcgcttccgcaagttcctggtgtttgtggcaaact 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143690567 atctgatgggcatgtttgagaagcggcgcttccgcaagttcctggtgtttgtggcaaact 143690508
Query: 585 tcgatgagaacgaccccaagaccttcgagggcgtcgacccccagagcaccagcatgcggg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143690507 tcgatgagaacgaccccaagaccttcgagggcgtcgacccccagagcaccagcatgcggg 143690448
Query: 645 acgtctaccggaagttcgacttgggccaggatgtcatcgacttcactggccacgccctgg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143690447 acgtctaccggaagttcgacttgggccaggatgtcatcgacttcactggccacgccctgg 143690388
Query: 705 cgctctaccgcactgatga 723
|||||||||||||||||||
Sbjct: 143690387 cgctctaccgcactgatga 143690369
Score = 337 bits (170), Expect = 9e-90
Identities = 173/174 (99%)
Strand = Plus / Minus
Query: 954 aggtggcccgctgcaagcagctgatctgcgatcccagctacgtcccagaccgtgtgcgga 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143689014 aggtggcccgctgcaagcagctgatctgcgatcccagctacgtcccagaccgtgtgcgga 143688955
Query: 1014 aggccggccaggtcatccgtatcatctgcctcctcagccaccccatcaagaacacgaacg 1073
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 143688954 aggccggccaggtcatccgtatcatctgcatcctcagccaccccatcaagaacacgaacg 143688895
Query: 1074 acgccaactcctgccagatcatcatcccccagaaccaggtcaacaggaagtcag 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143688894 acgccaactcctgccagatcatcatcccccagaaccaggtcaacaggaagtcag 143688841
Score = 281 bits (142), Expect = 5e-73
Identities = 149/150 (99%), Gaps = 1/150 (0%)
Strand = Plus / Minus
Query: 1125 cagacatctacgtgtgcatgatctcctacgcgcacaacgtggccgcgcagggcaagtaca 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143688573 cagacatctacgtgtgcatgatctcctacgcgcacaacgtggccgcgcagggcaagtaca 143688514
Query: 1185 tcgccatcgccagcaccaccgtggagaccgcggagcccgaaaagga-gtcgagccggccc 1243
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 143688513 tcgccatcgccagcaccaccgtggagaccgcggagcccgaaaaggaggtcgagccggccc 143688454
Query: 1244 tggagctgctggagcccattgaccagaagt 1273
||||||||||||||||||||||||||||||
Sbjct: 143688453 tggagctgctggagcccattgaccagaagt 143688424
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 389 gggcagctggtgaagatgctgctgtacacggaggtgacgcgctatctggacttcaaggtg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691130 gggcagctggtgaagatgctgctgtacacggaggtgacgcgctatctggacttcaaggtg 143691071
Query: 449 gtggagggcagctttgtctacaaggggggcaagatctacaaggtgccgtccaccgagact 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691070 gtggagggcagctttgtctacaaggggggcaagatctacaaggtgccgtccaccgagact 143691011
Query: 509 gaagctctggcttcca 524
||||||||||||||||
Sbjct: 143691010 gaagctctggcttcca 143690995
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 724 ctacctggaccagccctgtcttgagaccatcaaccgcatcaagctgtacagcgagtccct 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143690099 ctacctggaccagccctgtcttgagaccatcaaccgcatcaagctgtacagcgagtccct 143690040
Query: 784 ggcccgctatggcaagagcccctatctgtacccactctacggccttggagagctgcccca 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143690039 ggcccgctatggcaagagcccctatctgtacccactctacggccttggagagctgcccca 143689980
Query: 844 aggctttgcgag 855
||||||||||||
Sbjct: 143689979 aggctttgcgag 143689968
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 182 gaatgcatcctgtcggggatcatgtctgtgaacggcaagaaggtgctgcacatggaccgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691625 gaatgcatcctgtcggggatcatgtctgtgaacggcaagaaggtgctgcacatggaccgg 143691566
Query: 242 aacccctactatggcggcgagagctcctccatcacacccctggaggag 289
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691565 aacccctactatggcggcgagagctcctccatcacacccctggaggag 143691518
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 854 agactgagcgccatctacgggggcacgtacatgctgaacaagcccgtggacgacatcatc 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143689432 agactgagcgccatctacgggggcacgtacatgctgaacaagcccgtggacgacatcatc 143689373
Query: 914 atggagaacggcaaggtggtgggcgtgaagtccgagggagaggtg 958
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143689372 atggagaacggcaaggtggtgggcgtgaagtccgagggagaggtg 143689328
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 288 agctctataagcgttttcagttgctggaggggccccccgaggccatgggccgtggccgag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691384 agctctataagcgttttcagttgctggaggggccccccgaggccatgggccgtggccgag 143691325
Query: 348 actggaacgttgacttgatccccaaattcctcatggccaatgg 390
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143691324 actggaacgttgacttgatccccaaattcctcatggccaatgg 143691282
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 86 tgtggtgaagcaggaggaggagccgacaggcgctggcaccgaggcctgaccatggacgag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143692920 tgtggtgaagcaggaggaggagccgacaggcgctggcaccgaggcctgaccatggacgag 143692861
Query: 146 gaatacgatgtgatcgtgctggggaccggcctcaccg 182
|||||||||||||||||||||||||||||||||||||
Sbjct: 143692860 gaatacgatgtgatcgtgctggggaccggcctcaccg 143692824
Score = 83.8 bits (42), Expect = 2e-13
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 1272 gttcgtggcccatcagtgacttgtacgagcccgtcggtgatggttctgagagcc 1325
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 143688314 gttcgtggcc-atcagtgacttgtacgagcccgtcgatgatggttctgagagcc 143688262
>Sscrofa_Chr10
|| Length = 79102373
Score = 170 bits (86), Expect = 1e-39
Identities = 135/150 (90%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 1125 cagacatctacgtgtgcatgatctcctacgcgcacaacgtggccgcgcagggcaagtaca 1184
||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 71310808 cagacatctacgtctgcatgatctcctcggcgcacaacgtggctgcgcagggcaagtaca 71310867
Query: 1185 tcgccatcgccagcaccaccgtggagaccgcggagcccgaaaaggag-tcgagccggccc 1243
||||||||||||||||||||||||||||| ||| ||||| |||||| || |||||||
Sbjct: 71310868 tcgccatcgccagcaccaccgtggagaccaaggaacccgagaaggagatcagaccggccc 71310927
Query: 1244 tggagctgctggagcccattgaccagaagt 1273
||||||| |||||||| ||||| |||||||
Sbjct: 71310928 tggagctcctggagccgattgagcagaagt 71310957
Score = 159 bits (80), Expect = 5e-36
Identities = 137/156 (87%)
Strand = Plus / Plus
Query: 962 cgctgcaagcagctgatctgcgatcccagctacgtcccagaccgtgtgcggaaggccggc 1021
|||||||||||||| |||||||| ||||||||||| |||||| ||| ||||| |||
Sbjct: 71309214 cgctgcaagcagctcatctgcgaccccagctacgtgaaagaccgcgtggagaaggtgggc 71309273
Query: 1022 caggtcatccgtatcatctgcctcctcagccaccccatcaagaacacgaacgacgccaac 1081
||||| |||||| |||||||| |||| |||||||||||||||||||| | |||||||||
Sbjct: 71309274 caggtgatccgtgtcatctgcatcctgagccaccccatcaagaacaccagtgacgccaac 71309333
Query: 1082 tcctgccagatcatcatcccccagaaccaggtcaac 1117
||||||||||||||||| ||||||||||| ||||||
Sbjct: 71309334 tcctgccagatcatcattccccagaaccaagtcaac 71309369
Score = 67.9 bits (34), Expect = 1e-08
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 392 cagctggtgaagatgctgctgtacacggaggtgacgcgctatctggacttcaaggtggtg 451
|||||||| ||||||||||| | || ||||| || ||||| ||||| |||||||||
Sbjct: 71294819 cagctggttaagatgctgctttttaccgaggtcactcgctacctggatttcaaggtgacc 71294878
Query: 452 gagggcagctttgtctacaaggggggcaagatctacaaggtgccgtccac 501
|| || ||||| ||||||||||| || |||||||||||||| || |||||
Sbjct: 71294879 gaagggagcttcgtctacaagggagggaagatctacaaggttccttccac 71294928
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 345 gagactggaacgttgacttgatccccaaattcctcatggccaatgg 390
||||||||||||||||| | |||||||| ||||||||||| |||||
Sbjct: 71292063 gagactggaacgttgacctcatccccaagttcctcatggctaatgg 71292108
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,330,530
Number of extensions: 141
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 14
Length of query: 1345
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1324
Effective length of database: 2,808,413,156
Effective search space: 3718339018544
Effective search space used: 3718339018544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)