Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013011
(1184 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776380.1| pleiotrophin [Bos taurus]. 252 5e-67
Alignment gi|NP_776360.2| midkine (neurite growth-promoting factor 2) [Bo... 124 1e-28
Alignment gi|XP_002694422.1| PREDICTED: midkine-like [Bos taurus]. 122 6e-28
Alignment gi|XP_875804.3| PREDICTED: midkine-like [Bos taurus]. 122 6e-28
>ref|NP_776380.1| pleiotrophin [Bos taurus].
Length = 168
Score = 252 bits (643), Expect = 5e-67
Identities = 118/145 (81%), Positives = 120/145 (82%)
Frame = +3
Query: 306 MQTPQFLQQRRKXXXXXXXXXXXXXVVDTAEAGXXXXXXXXXXXSDCGEWQWSVCVPTSG 485
MQTPQ+LQQRRK VDTAEAG SDCGEWQWSVCVPTSG
Sbjct: 1 MQTPQYLQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG 60
Query: 486 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 665
DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
Sbjct: 61 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 120
Query: 666 SLKRALHNADCQKTVTISKPCGKVT 740
SLKRALHNADCQKTVTISKPCGK+T
Sbjct: 121 SLKRALHNADCQKTVTISKPCGKLT 145
>ref|NP_776360.2| midkine (neurite growth-promoting factor 2) [Bos taurus].
Length = 143
Score = 124 bits (312), Expect = 1e-28
Identities = 50/96 (52%), Positives = 67/96 (69%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + RC++PCNWKK+FGA+CKY+F+
Sbjct: 35 SECAEWTWGPCTPSSKDCGVGFREGT-----CGAQTQRIRCRVPCNWKKEFGADCKYKFE 89
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKP 725
WG CD T K R G+LK+A +NA CQ+T+ ++KP
Sbjct: 90 TWGACDGGTGTKARQGTLKKARYNAQCQETIRVTKP 125
>ref|XP_002694422.1| PREDICTED: midkine-like [Bos taurus].
Length = 167
Score = 122 bits (306), Expect = 6e-28
Identities = 50/101 (49%), Positives = 67/101 (66%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + RC++PCNWKK+FGA+CKY+F+
Sbjct: 35 SECAEWTWGPCTPSSKDCGVGFREGT-----CGAQTQRIRCRVPCNWKKEFGADCKYKFE 89
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPCGKVT 740
WG CD T K G+LK+A +NA CQ+T+ ++K C T
Sbjct: 90 IWGACDGGTGTKACQGTLKKARYNAQCQETIRVTKSCSPKT 130
>ref|XP_875804.3| PREDICTED: midkine-like [Bos taurus].
Length = 167
Score = 122 bits (306), Expect = 6e-28
Identities = 50/101 (49%), Positives = 67/101 (66%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + RC++PCNWKK+FGA+CKY+F+
Sbjct: 35 SECAEWTWGPCTPSSKDCGVGFREGT-----CGAQTQRIRCRVPCNWKKEFGADCKYKFE 89
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPCGKVT 740
WG CD T K G+LK+A +NA CQ+T+ ++K C T
Sbjct: 90 IWGACDGGTGTKACQGTLKKARYNAQCQETIRVTKSCSPKT 130
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,125,397
Number of extensions: 988707
Number of successful extensions: 3772
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3760
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 290
Effective length of database: 14,240,222
Effective search space: 4129664380
Effective search space used: 4129664380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013011
(1184 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532732.2| PREDICTED: similar to Pleiotrophin precursor (P... 246 3e-65
Alignment gi|XP_851259.1| PREDICTED: similar to Midkine precursor (MK) (N... 71 2e-12
Alignment gi|XP_854071.1| PREDICTED: similar to diacylglycerol kinase zet... 62 1e-09
>ref|XP_532732.2| PREDICTED: similar to Pleiotrophin precursor (PTN) (Heparin-binding
growth-associated molecule) (HB-GAM) (Heparin-binding
growth factor 8) (HBGF-8) (Osteoblast specific factor 1)
(OSF-1) (Heparin-binding neutrophic factor) (HBNF)
(Heparin-binding brain mitoge... [Canis familiaris].
Length = 168
Score = 246 bits (628), Expect = 3e-65
Identities = 115/145 (79%), Positives = 119/145 (82%)
Frame = +3
Query: 306 MQTPQFLQQRRKXXXXXXXXXXXXXVVDTAEAGXXXXXXXXXXXSDCGEWQWSVCVPTSG 485
MQ+ Q++QQRRK VDTAEAG SDCGEWQWSVCVPTSG
Sbjct: 1 MQSQQYVQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG 60
Query: 486 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 665
DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
Sbjct: 61 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 120
Query: 666 SLKRALHNADCQKTVTISKPCGKVT 740
SLKRALHNADCQKTVTISKPCGK+T
Sbjct: 121 SLKRALHNADCQKTVTISKPCGKLT 145
>ref|XP_851259.1| PREDICTED: similar to Midkine precursor (MK) (Neurite
outgrowth-promoting protein) (Midgestation and kidney
protein) (Amphiregulin-associated protein) (ARAP)
(Neurite outgrowth-promoting factor 2) [Canis
familiaris].
Length = 143
Score = 70.9 bits (172), Expect = 2e-12
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +3
Query: 579 KKQFGAECKYQFQAWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPC 728
KK+FGA+CKY+F+ WG CD + K R G+LK+A +NA CQ+T+ +KPC
Sbjct: 77 KKEFGADCKYEFENWGACDRGSGTKARQGTLKKARYNAQCQETIRATKPC 126
>ref|XP_854071.1| PREDICTED: similar to diacylglycerol kinase zeta [Canis
familiaris].
Length = 310
Score = 62.0 bits (149), Expect = 1e-09
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +3
Query: 594 AECKYQFQAWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPC 728
A+CKY+F+ WG CD + K R G+LK+A +NA CQ+T+ ++KPC
Sbjct: 211 ADCKYKFENWGACDGGSGTKARQGTLKKARYNAQCQETIRVTKPC 255
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,502,512
Number of extensions: 972631
Number of successful extensions: 4006
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3999
Number of HSP's successfully gapped: 3
Length of query: 394
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 289
Effective length of database: 15,374,224
Effective search space: 4443150736
Effective search space used: 4443150736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013011
(1184 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999501.1| pleiotrophin precursor [Sus scrofa]. 256 2e-68
Alignment gi|XP_003134688.2| PREDICTED: pleiotrophin-like [Sus scrofa]. 256 2e-68
Alignment gi|NP_001182281.1| midkine [Sus scrofa]. 129 4e-30
>ref|NP_999501.1| pleiotrophin precursor [Sus scrofa].
Length = 168
Score = 256 bits (653), Expect = 2e-68
Identities = 121/145 (83%), Positives = 121/145 (83%)
Frame = +3
Query: 306 MQTPQFLQQRRKXXXXXXXXXXXXXVVDTAEAGXXXXXXXXXXXSDCGEWQWSVCVPTSG 485
MQTPQFLQQRRK VVDTAEAG SDCGEWQWSVCVPTSG
Sbjct: 1 MQTPQFLQQRRKFAAAFLAFIFLLAVVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG 60
Query: 486 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 665
DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
Sbjct: 61 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 120
Query: 666 SLKRALHNADCQKTVTISKPCGKVT 740
SLKRALHNADCQKTVTISKPCGKVT
Sbjct: 121 SLKRALHNADCQKTVTISKPCGKVT 145
>ref|XP_003134688.2| PREDICTED: pleiotrophin-like [Sus scrofa].
Length = 231
Score = 256 bits (653), Expect = 2e-68
Identities = 121/145 (83%), Positives = 121/145 (83%)
Frame = +3
Query: 306 MQTPQFLQQRRKXXXXXXXXXXXXXVVDTAEAGXXXXXXXXXXXSDCGEWQWSVCVPTSG 485
MQTPQFLQQRRK VVDTAEAG SDCGEWQWSVCVPTSG
Sbjct: 1 MQTPQFLQQRRKFAAAFLAFIFLLAVVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG 60
Query: 486 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 665
DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
Sbjct: 61 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 120
Query: 666 SLKRALHNADCQKTVTISKPCGKVT 740
SLKRALHNADCQKTVTISKPCGKVT
Sbjct: 121 SLKRALHNADCQKTVTISKPCGKVT 145
>ref|NP_001182281.1| midkine [Sus scrofa].
Length = 143
Score = 129 bits (323), Expect = 4e-30
Identities = 51/97 (52%), Positives = 69/97 (71%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + RC++PCNWKK+FGA+CKY+F+
Sbjct: 35 SECAEWTWGPCTPSSKDCGVGFREGT-----CGAQTQRVRCRVPCNWKKEFGADCKYKFE 89
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPC 728
+WG CD T K R G+LK+A +NA CQ+T+ ++KPC
Sbjct: 90 SWGACDGGTGTKARQGTLKKARYNAQCQETIRVTKPC 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,635,403
Number of extensions: 700072
Number of successful extensions: 2454
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2444
Number of HSP's successfully gapped: 3
Length of query: 394
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,829,335
Effective search space: 2586995155
Effective search space used: 2586995155
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013011
(1184 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032999.1| pleiotrophin [Mus musculus]. 243 2e-64
Alignment gi|NP_001012336.1| midkine precursor [Mus musculus]. 129 4e-30
Alignment gi|NP_001012335.1| midkine precursor [Mus musculus]. 129 4e-30
Alignment gi|NP_034914.1| midkine precursor [Mus musculus]. 129 4e-30
>ref|NP_032999.1| pleiotrophin [Mus musculus].
Length = 168
Score = 243 bits (620), Expect = 2e-64
Identities = 114/145 (78%), Positives = 117/145 (80%)
Frame = +3
Query: 306 MQTPQFLQQRRKXXXXXXXXXXXXXVVDTAEAGXXXXXXXXXXXSDCGEWQWSVCVPTSG 485
M + Q+ QQRRK VDTAEAG SDCGEWQWSVCVPTSG
Sbjct: 1 MSSQQYQQQRRKFAAAFLALIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG 60
Query: 486 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 665
DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
Sbjct: 61 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 120
Query: 666 SLKRALHNADCQKTVTISKPCGKVT 740
SLKRALHNADCQKTVTISKPCGK+T
Sbjct: 121 SLKRALHNADCQKTVTISKPCGKLT 145
>ref|NP_001012336.1| midkine precursor [Mus musculus].
Length = 140
Score = 129 bits (324), Expect = 4e-30
Identities = 52/101 (51%), Positives = 70/101 (69%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + CK+PCNWKK+FGA+CKY+F+
Sbjct: 32 SECSEWTWGPCTPSSKDCGMGFREGT-----CGAQTQRVHCKVPCNWKKEFGADCKYKFE 86
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPCGKVT 740
+WG CD +T K R G+LK+A +NA CQ+T+ ++KPC T
Sbjct: 87 SWGACDGSTGTKARQGTLKKARYNAQCQETIRVTKPCTSKT 127
>ref|NP_001012335.1| midkine precursor [Mus musculus].
Length = 140
Score = 129 bits (324), Expect = 4e-30
Identities = 52/101 (51%), Positives = 70/101 (69%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + CK+PCNWKK+FGA+CKY+F+
Sbjct: 32 SECSEWTWGPCTPSSKDCGMGFREGT-----CGAQTQRVHCKVPCNWKKEFGADCKYKFE 86
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPCGKVT 740
+WG CD +T K R G+LK+A +NA CQ+T+ ++KPC T
Sbjct: 87 SWGACDGSTGTKARQGTLKKARYNAQCQETIRVTKPCTSKT 127
>ref|NP_034914.1| midkine precursor [Mus musculus].
Length = 140
Score = 129 bits (324), Expect = 4e-30
Identities = 52/101 (51%), Positives = 70/101 (69%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + CK+PCNWKK+FGA+CKY+F+
Sbjct: 32 SECSEWTWGPCTPSSKDCGMGFREGT-----CGAQTQRVHCKVPCNWKKEFGADCKYKFE 86
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPCGKVT 740
+WG CD +T K R G+LK+A +NA CQ+T+ ++KPC T
Sbjct: 87 SWGACDGSTGTKARQGTLKKARYNAQCQETIRVTKPCTSKT 127
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,877,509
Number of extensions: 809838
Number of successful extensions: 3212
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3200
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 291
Effective length of database: 12,523,851
Effective search space: 3644440641
Effective search space used: 3644440641
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013011
(1184 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002816.1| pleiotrophin [Homo sapiens]. 243 2e-64
Alignment gi|XP_002342798.1| PREDICTED: hypothetical protein LOC100287705... 159 5e-39
Alignment gi|XP_002344434.1| PREDICTED: hypothetical protein LOC100287705... 159 5e-39
Alignment gi|XP_003120105.1| PREDICTED: hypothetical protein LOC100287705... 159 5e-39
Alignment gi|NP_001012334.1| midkine [Homo sapiens]. 127 2e-29
Alignment gi|NP_001012333.1| midkine [Homo sapiens]. 127 2e-29
Alignment gi|NP_002382.1| midkine [Homo sapiens]. 127 2e-29
>ref|NP_002816.1| pleiotrophin [Homo sapiens].
Length = 168
Score = 243 bits (620), Expect = 2e-64
Identities = 114/145 (78%), Positives = 117/145 (80%)
Frame = +3
Query: 306 MQTPQFLQQRRKXXXXXXXXXXXXXVVDTAEAGXXXXXXXXXXXSDCGEWQWSVCVPTSG 485
MQ Q+ QQRRK VDTAEAG SDCGEWQWSVCVPTSG
Sbjct: 1 MQAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSG 60
Query: 486 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 665
DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG
Sbjct: 61 DCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTG 120
Query: 666 SLKRALHNADCQKTVTISKPCGKVT 740
SLKRALHNA+CQKTVTISKPCGK+T
Sbjct: 121 SLKRALHNAECQKTVTISKPCGKLT 145
>ref|XP_002342798.1| PREDICTED: hypothetical protein LOC100287705 [Homo sapiens].
Length = 137
Score = 159 bits (402), Expect = 5e-39
Identities = 82/115 (71%), Positives = 83/115 (72%), Gaps = 4/115 (3%)
Frame = -2
Query: 715 MVTVFWQSALWRARFRLPVLVFKAVFRSHSPQAWNWYLHSA----PNCFFQLHGILHLWV 548
MVTVFW SAL RARFRLPVLVF+AVFRSHSPQAWNWYLHSA PNCFFQL GILHLWV
Sbjct: 1 MVTVFWHSALCRARFRLPVLVFRAVFRSHSPQAWNWYLHSAKGLPPNCFFQLQGILHLWV 60
Query: 547 FMVCLHSAXXXXXXXXXXXXXPLVGTHTLHCHSPQXXXXXXXXXXXXFPASAVST 383
FMVCLHSA PLVGTHTLHCHSPQ FPASAVST
Sbjct: 61 FMVCLHSAPVRVPSRVPSPQSPLVGTHTLHCHSPQSDFFTFFSGFSFFPASAVST 115
>ref|XP_002344434.1| PREDICTED: hypothetical protein LOC100287705 [Homo sapiens].
Length = 137
Score = 159 bits (402), Expect = 5e-39
Identities = 82/115 (71%), Positives = 83/115 (72%), Gaps = 4/115 (3%)
Frame = -2
Query: 715 MVTVFWQSALWRARFRLPVLVFKAVFRSHSPQAWNWYLHSA----PNCFFQLHGILHLWV 548
MVTVFW SAL RARFRLPVLVF+AVFRSHSPQAWNWYLHSA PNCFFQL GILHLWV
Sbjct: 1 MVTVFWHSALCRARFRLPVLVFRAVFRSHSPQAWNWYLHSAKGLPPNCFFQLQGILHLWV 60
Query: 547 FMVCLHSAXXXXXXXXXXXXXPLVGTHTLHCHSPQXXXXXXXXXXXXFPASAVST 383
FMVCLHSA PLVGTHTLHCHSPQ FPASAVST
Sbjct: 61 FMVCLHSAPVRVPSRVPSPQSPLVGTHTLHCHSPQSDFFTFFSGFSFFPASAVST 115
>ref|XP_003120105.1| PREDICTED: hypothetical protein LOC100287705 [Homo sapiens].
Length = 137
Score = 159 bits (402), Expect = 5e-39
Identities = 82/115 (71%), Positives = 83/115 (72%), Gaps = 4/115 (3%)
Frame = -2
Query: 715 MVTVFWQSALWRARFRLPVLVFKAVFRSHSPQAWNWYLHSA----PNCFFQLHGILHLWV 548
MVTVFW SAL RARFRLPVLVF+AVFRSHSPQAWNWYLHSA PNCFFQL GILHLWV
Sbjct: 1 MVTVFWHSALCRARFRLPVLVFRAVFRSHSPQAWNWYLHSAKGLPPNCFFQLQGILHLWV 60
Query: 547 FMVCLHSAXXXXXXXXXXXXXPLVGTHTLHCHSPQXXXXXXXXXXXXFPASAVST 383
FMVCLHSA PLVGTHTLHCHSPQ FPASAVST
Sbjct: 61 FMVCLHSAPVRVPSRVPSPQSPLVGTHTLHCHSPQSDFFTFFSGFSFFPASAVST 115
>ref|NP_001012334.1| midkine [Homo sapiens].
Length = 143
Score = 127 bits (319), Expect = 2e-29
Identities = 51/97 (52%), Positives = 68/97 (70%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + RC++PCNWKK+FGA+CKY+F+
Sbjct: 35 SECAEWAWGPCTPSSKDCGVGFREGT-----CGAQTQRIRCRVPCNWKKEFGADCKYKFE 89
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPC 728
WG CD T K R G+LK+A +NA CQ+T+ ++KPC
Sbjct: 90 NWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126
>ref|NP_001012333.1| midkine [Homo sapiens].
Length = 143
Score = 127 bits (319), Expect = 2e-29
Identities = 51/97 (52%), Positives = 68/97 (70%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + RC++PCNWKK+FGA+CKY+F+
Sbjct: 35 SECAEWAWGPCTPSSKDCGVGFREGT-----CGAQTQRIRCRVPCNWKKEFGADCKYKFE 89
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPC 728
WG CD T K R G+LK+A +NA CQ+T+ ++KPC
Sbjct: 90 NWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126
>ref|NP_002382.1| midkine [Homo sapiens].
Length = 143
Score = 127 bits (319), Expect = 2e-29
Identities = 51/97 (52%), Positives = 68/97 (70%)
Frame = +3
Query: 438 SDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQ 617
S+C EW W C P+S DCG+G REGT C + RC++PCNWKK+FGA+CKY+F+
Sbjct: 35 SECAEWAWGPCTPSSKDCGVGFREGT-----CGAQTQRIRCRVPCNWKKEFGADCKYKFE 89
Query: 618 AWGECDLNTALKTRTGSLKRALHNADCQKTVTISKPC 728
WG CD T K R G+LK+A +NA CQ+T+ ++KPC
Sbjct: 90 NWGACDGGTGTKVRQGTLKKARYNAQCQETIRVTKPC 126
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,895,555
Number of extensions: 960840
Number of successful extensions: 3794
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3781
Number of HSP's successfully gapped: 7
Length of query: 394
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 289
Effective length of database: 14,835,944
Effective search space: 4287587816
Effective search space used: 4287587816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013011
(1184 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 543 e-152
>Sscrofa_Chr18
|| Length = 61220071
Score = 543 bits (274), Expect = e-152
Identities = 274/274 (100%)
Strand = Plus / Plus
Query: 31 cccttccgttccctcccagtctgggcgtgctcgagcccaaggcaggatcggggtccccgc 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12892531 cccttccgttccctcccagtctgggcgtgctcgagcccaaggcaggatcggggtccccgc 12892590
Query: 91 cttccagtccgaaaatcccgccaagggagccgaagagcagaggaaaagccaaagtgggga 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12892591 cttccagtccgaaaatcccgccaagggagccgaagagcagaggaaaagccaaagtgggga 12892650
Query: 151 gaggggacgaaagagacctgtgagtcaccgtgtggcagtcagggagcagccgcttccgcg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12892651 gaggggacgaaagagacctgtgagtcaccgtgtggcagtcagggagcagccgcttccgcg 12892710
Query: 211 agcagcagcgactggggtacctggactccaggcaggaaacctcgccccatcaacaaaggc 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12892711 agcagcagcgactggggtacctggactccaggcaggaaacctcgccccatcaacaaaggc 12892770
Query: 271 agcctgagcgcgcaccacacgtttgcaactccaa 304
||||||||||||||||||||||||||||||||||
Sbjct: 12892771 agcctgagcgcgcaccacacgtttgcaactccaa 12892804
Score = 345 bits (174), Expect = 3e-92
Identities = 180/182 (98%)
Strand = Plus / Plus
Query: 755 agcagaatctaagaagaagaaaaaggaaggcaagaaacaggagaagatgctggactaaat 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12980882 agcagaatctaagaagaagaaaaaggaaggcaagaaacaggagaagatgctggactaaat 12980941
Query: 815 gacaccaccttctgtggaacaggaaaaggacgtcagcaaacaggatcagttaactattgc 874
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12980942 gacaccaccttctgtggaacaggaaaaggacatcagcaaacaggatcagttaactattgc 12981001
Query: 875 atttatacctaccgtaggctttttattccaaaattatctatagcttaagtacacaatagg 934
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12981002 atttatacctaccgtaggctttttattccaaaattatctatagcttaagtatacaatagg 12981061
Query: 935 ca 936
||
Sbjct: 12981062 ca 12981063
Score = 331 bits (167), Expect = 5e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 428 ggtgaagaagtctgactgtggagaatggcagtggagtgtgtgtgtgcccaccagtgggga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12961432 ggtgaagaagtctgactgtggagaatggcagtggagtgtgtgtgtgcccaccagtgggga 12961491
Query: 488 ctgtgggctgggcacccgggagggcacccggactggagctgagtgtaaacaaaccatgaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12961492 ctgtgggctgggcacccgggagggcacccggactggagctgagtgtaaacaaaccatgaa 12961551
Query: 548 gacccagagatgtaagatcccgtgcaactggaaaaagcagtttggag 594
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12961552 gacccagagatgtaagatcccgtgcaactggaaaaagcagtttggag 12961598
Score = 331 bits (167), Expect = 5e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 428 ggtgaagaagtctgactgtggagaatggcagtggagtgtgtgtgtgcccaccagtgggga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13056574 ggtgaagaagtctgactgtggagaatggcagtggagtgtgtgtgtgcccaccagtgggga 13056515
Query: 488 ctgtgggctgggcacccgggagggcacccggactggagctgagtgtaaacaaaccatgaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13056514 ctgtgggctgggcacccgggagggcacccggactggagctgagtgtaaacaaaccatgaa 13056455
Query: 548 gacccagagatgtaagatcccgtgcaactggaaaaagcagtttggag 594
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13056454 gacccagagatgtaagatcccgtgcaactggaaaaagcagtttggag 13056408
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 593 agcggagtgcaaataccagttccaggcctggggcgaatgtgacctgaacacggccttgaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12963798 agcggagtgcaaataccagttccaggcctggggcgaatgtgacctgaacacggccttgaa 12963857
Query: 653 gaccagaaccggaagcctgaagcgagctctccacaacgccgactgccagaagacagtcac 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12963858 gaccagaaccggaagcctgaagcgagctctccacaacgccgactgccagaagacagtcac 12963917
Query: 713 catctccaagccctgtggcaaagtgactaagcccaaacctcaag 756
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12963918 catctccaagccctgtggcaaagtgactaagcccaaacctcaag 12963961
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 593 agcggagtgcaaataccagttccaggcctggggcgaatgtgacctgaacacggccttgaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13054210 agcggagtgcaaataccagttccaggcctggggcgaatgtgacctgaacacggccttgaa 13054151
Query: 653 gaccagaaccggaagcctgaagcgagctctccacaacgccgactgccagaagacagtcac 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13054150 gaccagaaccggaagcctgaagcgagctctccacaacgccgactgccagaagacagtcac 13054091
Query: 713 catctccaagccctgtggcaaagtgactaagcccaaacctcaag 756
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13054090 catctccaagccctgtggcaaagtgactaagcccaaacctcaag 13054047
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 305 aatgcagaccccacagttcctgcagcagcgtcgaaaatttgcagctgccttcttggcatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12960398 aatgcagaccccacagttcctgcagcagcgtcgaaaatttgcagctgccttcttggcatt 12960457
Query: 365 cattttccttttggcagttgtggataccgctgaagcaggaaagaaagagaaaccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12960458 cattttccttttggcagttgtggataccgctgaagcaggaaagaaagagaaaccag 12960513
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 305 aatgcagaccccacagttcctgcagcagcgtcgaaaatttgcagctgccttcttggcatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13057605 aatgcagaccccacagttcctgcagcagcgtcgaaaatttgcagctgccttcttggcatt 13057546
Query: 365 cattttccttttggcagttgtggataccgctgaagcaggaaagaaagagaaaccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13057545 cattttccttttggcagttgtggataccgctgaagcaggaaagaaagagaaaccag 13057490
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,170,382
Number of extensions: 795
Number of successful extensions: 795
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 8
Length of query: 1184
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1163
Effective length of database: 2,808,413,156
Effective search space: 3266184500428
Effective search space used: 3266184500428
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)