Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013015
(1064 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068606.1| reticulon-4 isoform 1 [Bos taurus]. 269 3e-72
Alignment gi|NP_001106692.1| reticulon-4 isoform 2 [Bos taurus]. 244 9e-65
Alignment gi|NP_872598.1| reticulon-3 [Bos taurus]. 152 6e-37
Alignment gi|NP_872597.1| reticulon-2 isoform C [Bos taurus]. 105 9e-23
Alignment gi|NP_001106731.1| reticulon-2 isoform B [Bos taurus]. 103 3e-22
>ref|NP_001068606.1| reticulon-4 isoform 1 [Bos taurus].
Length = 199
Score = 269 bits (688), Expect = 3e-72
Identities = 144/199 (72%), Positives = 144/199 (72%)
Frame = +3
Query: 165 MDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTIS 344
MDGQKKNWKDKVVDLLYWRDIKKTG TAYIALALLSVTIS
Sbjct: 1 MDGQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS 60
Query: 345 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXX 524
FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE
Sbjct: 61 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD 120
Query: 525 XXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNV 704
KFAVLMWVFTYV VPVIYERHQAQIDHYLGLANKNV
Sbjct: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 180
Query: 705 KDAMAKIQAKIPGLKRKTE 761
KDAMAKIQAKIPGLKRK E
Sbjct: 181 KDAMAKIQAKIPGLKRKAE 199
>ref|NP_001106692.1| reticulon-4 isoform 2 [Bos taurus].
Length = 379
Score = 244 bits (623), Expect = 9e-65
Identities = 133/188 (70%), Positives = 133/188 (70%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVIQAI
Sbjct: 192 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 251
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE KFAVL
Sbjct: 252 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 311
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MWVFTYV VPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI
Sbjct: 312 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 371
Query: 738 PGLKRKTE 761
PGLKRK E
Sbjct: 372 PGLKRKAE 379
>ref|NP_872598.1| reticulon-3 [Bos taurus].
Length = 237
Score = 152 bits (383), Expect = 6e-37
Identities = 74/186 (39%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 49 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 108
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K K AV
Sbjct: 109 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 168
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV +P++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 169 MWLMTYVGAVFNGITLLILAELLVFSIPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 228
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 229 PGIAKK 234
>ref|NP_872597.1| reticulon-2 isoform C [Bos taurus].
Length = 205
Score = 105 bits (261), Expect = 9e-23
Identities = 57/183 (31%), Positives = 88/183 (48%)
Frame = +3
Query: 195 KVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQA 374
KVVDLL+W+D K +G A++AL LL TIS R+Y+ V+QA
Sbjct: 4 KVVDLLHWKDAKTSGVVFTCLMVSLLSLLHFSIVSVAAHVALLLLCGTISLRVYRKVLQA 63
Query: 375 IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAV 554
+ + D +PF+AYL+ ++ +++E ++ S V + K A+
Sbjct: 64 VHRGDGANPFQAYLDVDLTLTQEQTERLSQQIASRVVSAAIQLRHFFLVEDLVDSLKLAL 123
Query: 555 LMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK 734
L ++ T+V VP++Y +HQAQID Y+GL + AKI+AK
Sbjct: 124 LFYILTFVGAVFNGLTLLILGVIGVFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAK 183
Query: 735 IPG 743
IPG
Sbjct: 184 IPG 186
>ref|NP_001106731.1| reticulon-2 isoform B [Bos taurus].
Length = 470
Score = 103 bits (256), Expect = 3e-22
Identities = 56/182 (30%), Positives = 87/182 (47%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
VVDLL+W+D K +G A++AL LL TIS R+Y+ V+QA+
Sbjct: 270 VVDLLHWKDAKTSGVVFTCLMVSLLSLLHFSIVSVAAHVALLLLCGTISLRVYRKVLQAV 329
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
+ D +PF+AYL+ ++ +++E ++ S V + K A+L
Sbjct: 330 HRGDGANPFQAYLDVDLTLTQEQTERLSQQIASRVVSAAIQLRHFFLVEDLVDSLKLALL 389
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
++ T+V VP++Y +HQAQID Y+GL + AKI+AKI
Sbjct: 390 FYILTFVGAVFNGLTLLILGVIGVFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 449
Query: 738 PG 743
PG
Sbjct: 450 PG 451
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,471,505
Number of extensions: 846655
Number of successful extensions: 1826
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1815
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013015
(1064 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531828.1| PREDICTED: similar to reticulon 4 isoform C iso... 262 4e-70
Alignment gi|XP_865248.1| PREDICTED: similar to Reticulon 4 (Neurite outg... 220 2e-57
Alignment gi|XP_852236.1| PREDICTED: similar to Reticulon 4 (Neurite outg... 219 3e-57
Alignment gi|NP_001007132.1| reticulon-1 [Canis lupus familiaris]. 176 3e-44
Alignment gi|XP_865314.1| PREDICTED: similar to reticulon 4 isoform C iso... 171 1e-42
Alignment gi|XP_865264.1| PREDICTED: similar to reticulon 4 isoform C iso... 171 1e-42
Alignment gi|NP_001183978.1| reticulon-3 [Canis lupus familiaris]. 152 5e-37
Alignment gi|XP_851322.1| PREDICTED: similar to Reticulon protein 3 (Neur... 125 9e-29
Alignment gi|XP_852420.1| PREDICTED: similar to Reticulon protein 2 (Neur... 100 2e-21
Alignment gi|XP_541559.2| PREDICTED: similar to Reticulon protein 2 (Neur... 99 9e-21
>ref|XP_531828.1| PREDICTED: similar to reticulon 4 isoform C isoform 1 [Canis
familiaris].
Length = 199
Score = 262 bits (670), Expect = 4e-70
Identities = 141/199 (70%), Positives = 142/199 (71%)
Frame = +3
Query: 165 MDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTIS 344
MD QKKNWKDKVVDLLYWRDIKKTG TAYI LALLSVTIS
Sbjct: 1 MDCQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTIS 60
Query: 345 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXX 524
FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE
Sbjct: 61 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD 120
Query: 525 XXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNV 704
KFAVLMWVFTYV VPVIYERHQAQIDHYLGLANK+V
Sbjct: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKSV 180
Query: 705 KDAMAKIQAKIPGLKRKTE 761
KDAMAKIQAKIPGLKRK E
Sbjct: 181 KDAMAKIQAKIPGLKRKAE 199
>ref|XP_865248.1| PREDICTED: similar to Reticulon 4 (Neurite outgrowth inhibitor)
(Nogo protein) (Foocen) (Neuroendocrine-specific
protein) (NSP) (Neuroendocrine specific protein C
homolog) (RTN-x) (Reticulon 5) isoform 4 [Canis
familiaris].
Length = 181
Score = 220 bits (560), Expect = 2e-57
Identities = 121/180 (67%), Positives = 123/180 (68%)
Frame = +3
Query: 222 DIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAIQKSDEGHP 401
D +KTG TAYI LALLSVTISFRIYKGVIQAIQKSDEGHP
Sbjct: 2 DCQKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTISFRIYKGVIQAIQKSDEGHP 61
Query: 402 FRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVLMWVFTYVX 581
FRAYLESEVAISEELVQKYSNSALGHVNCTIKE KFAVLMWVFTYV
Sbjct: 62 FRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVG 121
Query: 582 XXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKIPGLKRKTE 761
VPVIYERHQAQIDHYLGLANK+VKDAMAKIQAKIPGLKRK E
Sbjct: 122 ALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKIPGLKRKAE 181
>ref|XP_852236.1| PREDICTED: similar to Reticulon 4 (Neurite outgrowth inhibitor) (Nogo
protein) (Foocen) (Neuroendocrine-specific protein) (NSP)
(Neuroendocrine specific protein C homolog) (RTN-x)
(Reticulon 5) isoform 3 [Canis familiaris].
Length = 974
Score = 219 bits (559), Expect = 3e-57
Identities = 120/178 (67%), Positives = 121/178 (67%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K VVDLLYWRDIKKTG TAYI LALLSVTISFRIYKGVI
Sbjct: 797 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTISFRIYKGVI 856
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE KF
Sbjct: 857 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 916
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAK 722
AVLMWVFTYV VPVIYERHQAQIDHYLGLANK+VKDAMAK
Sbjct: 917 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKSVKDAMAK 974
>ref|NP_001007132.1| reticulon-1 [Canis lupus familiaris].
Length = 208
Score = 176 bits (446), Expect = 3e-44
Identities = 91/200 (45%), Positives = 115/200 (57%)
Frame = +3
Query: 162 EMDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTI 341
+MD NWK + +DLLYWRDIK+TG AY+ALA LS TI
Sbjct: 9 KMDCVWSNWKSQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATI 68
Query: 342 SFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXX 521
SFRIYK V+QA+QK+DEGHPF+ YLE E+ +S+E +QKY++ +VN T+KE
Sbjct: 69 SFRIYKSVLQAVQKTDEGHPFKTYLELEITLSQEQIQKYTDCLQFYVNNTLKELRRLFLV 128
Query: 522 XXXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKN 701
KFAVLMW+ TYV +PV+Y +HQAQID YLGL +
Sbjct: 129 QDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTH 188
Query: 702 VKDAMAKIQAKIPGLKRKTE 761
+ +AKIQAKIPG KR E
Sbjct: 189 INTVVAKIQAKIPGAKRHAE 208
>ref|XP_865314.1| PREDICTED: similar to reticulon 4 isoform C isoform 6 [Canis
familiaris].
Length = 131
Score = 171 bits (433), Expect = 1e-42
Identities = 89/112 (79%), Positives = 89/112 (79%)
Frame = +3
Query: 165 MDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTIS 344
MD QKKNWKDKVVDLLYWRDIKKTG TAYI LALLSVTIS
Sbjct: 1 MDCQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTIS 60
Query: 345 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE 500
FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE
Sbjct: 61 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE 112
>ref|XP_865264.1| PREDICTED: similar to reticulon 4 isoform C isoform 5 [Canis
familiaris].
Length = 135
Score = 171 bits (433), Expect = 1e-42
Identities = 89/112 (79%), Positives = 89/112 (79%)
Frame = +3
Query: 165 MDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTIS 344
MD QKKNWKDKVVDLLYWRDIKKTG TAYI LALLSVTIS
Sbjct: 1 MDCQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTIS 60
Query: 345 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE 500
FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE
Sbjct: 61 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE 112
>ref|NP_001183978.1| reticulon-3 [Canis lupus familiaris].
Length = 235
Score = 152 bits (384), Expect = 5e-37
Identities = 75/186 (40%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 47 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 106
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K K AV
Sbjct: 107 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 166
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV VP++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 167 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 226
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 227 PGIAKK 232
>ref|XP_851322.1| PREDICTED: similar to Reticulon protein 3 (Neuroendocrine-specific
protein-like 2) (NSP-like protein II) (NSPLII) [Canis
familiaris].
Length = 208
Score = 125 bits (313), Expect = 9e-29
Identities = 66/186 (35%), Positives = 97/186 (52%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++W+D+KKTG ++ SVTISFR+YK VIQ I
Sbjct: 34 VQDLIFWKDVKKTGFQCHQC----------------GFLLRPGSSVTISFRLYKSVIQGI 77
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++A+S E + N+A+ H+N +K K V
Sbjct: 78 QKSEEGHPFKAYLDVDIAVSSEAFHNHVNAAMVHINRALKLIIRLFLVEDLVDSLKLNVF 137
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
+W+ TYV VP+ E+++ QIDHY+G+A K + KIQAK+
Sbjct: 138 VWLMTYVGAVFNGITLLILAELLIFSVPIDCEKYKTQIDHYVGIARDQTKSIVEKIQAKL 197
Query: 738 PGLKRK 755
PG+++K
Sbjct: 198 PGIEKK 203
>ref|XP_852420.1| PREDICTED: similar to Reticulon protein 2 (Neuroendocrine-specific
protein-like 1) (NSP-like protein 1) (NSPLI) isoform 2
[Canis familiaris].
Length = 205
Score = 100 bits (249), Expect = 2e-21
Identities = 55/183 (30%), Positives = 86/183 (46%)
Frame = +3
Query: 195 KVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQA 374
KV DLLYW+D + +G TA++AL LL TIS R+Y+ V+QA
Sbjct: 4 KVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVTAHVALLLLCGTISLRVYRKVLQA 63
Query: 375 IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAV 554
+ + D +PF+AYL+ ++ ++ E +++ S V + K A+
Sbjct: 64 VHRGDGANPFQAYLDVDLTLTREQMERLSQQIASRVVSMAIQLRHFFLVEDLVDSLKLAL 123
Query: 555 LMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK 734
L ++ T+V VP++Y +HQAQ+D Y+GL + AK AK
Sbjct: 124 LFYILTFVGAVFNGLTLLILGVIGLFTVPLLYRQHQAQMDQYVGLVTNQLSHIKAKPLAK 183
Query: 735 IPG 743
IPG
Sbjct: 184 IPG 186
>ref|XP_541559.2| PREDICTED: similar to Reticulon protein 2 (Neuroendocrine-specific
protein-like 1) (NSP-like protein 1) (NSPLI) isoform 1
[Canis familiaris].
Length = 208
Score = 98.6 bits (244), Expect = 9e-21
Identities = 54/182 (29%), Positives = 85/182 (46%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DLLYW+D + +G TA++AL LL TIS R+Y+ V+QA+
Sbjct: 8 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVTAHVALLLLCGTISLRVYRKVLQAV 67
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
+ D +PF+AYL+ ++ ++ E +++ S V + K A+L
Sbjct: 68 HRGDGANPFQAYLDVDLTLTREQMERLSQQIASRVVSMAIQLRHFFLVEDLVDSLKLALL 127
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
++ T+V VP++Y +HQAQ+D Y+GL + AK AKI
Sbjct: 128 FYILTFVGAVFNGLTLLILGVIGLFTVPLLYRQHQAQMDQYVGLVTNQLSHIKAKPLAKI 187
Query: 738 PG 743
PG
Sbjct: 188 PG 189
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,887,418
Number of extensions: 860870
Number of successful extensions: 1933
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1911
Number of HSP's successfully gapped: 10
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013015
(1064 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123435.1| reticulon-4 [Sus scrofa]. 271 4e-73
Alignment gi|XP_003353544.1| PREDICTED: reticulon-1 isoform 2 [Sus scrofa]. 178 5e-45
Alignment gi|XP_003121890.2| PREDICTED: reticulon-1 isoform 1 [Sus scrofa]. 171 5e-43
Alignment gi|XP_003122650.1| PREDICTED: reticulon-3 isoform 1 [Sus scrofa]. 153 2e-37
Alignment gi|XP_003353848.1| PREDICTED: reticulon-3 isoform 2 [Sus scrofa]. 117 1e-26
Alignment gi|NP_001123432.1| reticulon-2 [Sus scrofa]. 100 2e-21
Alignment gi|XP_003125190.2| PREDICTED: reticulon-4-like [Sus scrofa]. 94 1e-19
>ref|NP_001123435.1| reticulon-4 [Sus scrofa].
Length = 199
Score = 271 bits (693), Expect = 4e-73
Identities = 145/199 (72%), Positives = 145/199 (72%)
Frame = +3
Query: 165 MDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTIS 344
MDGQKKNWKDKVVDLLYWRDIKKTG TAYIALALLSVTIS
Sbjct: 1 MDGQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS 60
Query: 345 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXX 524
FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE
Sbjct: 61 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD 120
Query: 525 XXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNV 704
KFAVLMWVFTYV VPVIYERHQAQIDHYLGLANKNV
Sbjct: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 180
Query: 705 KDAMAKIQAKIPGLKRKTE 761
KDAMAKIQAKIPGLKRKTE
Sbjct: 181 KDAMAKIQAKIPGLKRKTE 199
>ref|XP_003353544.1| PREDICTED: reticulon-1 isoform 2 [Sus scrofa].
Length = 208
Score = 178 bits (451), Expect = 5e-45
Identities = 92/200 (46%), Positives = 116/200 (58%)
Frame = +3
Query: 162 EMDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTI 341
+MD NWK + +DLLYWRDIK+TG AY+ALA LS TI
Sbjct: 9 KMDCVWSNWKSQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATI 68
Query: 342 SFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXX 521
SFRIYK V+QA+QK+DEGHPF+AYLE E+ +S+E +QKY++ +VN T+KE
Sbjct: 69 SFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLV 128
Query: 522 XXXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKN 701
KFAVLMW+ TYV +PV+Y +HQAQID YLGL +
Sbjct: 129 QDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTH 188
Query: 702 VKDAMAKIQAKIPGLKRKTE 761
+ +AKIQAKIPG KR E
Sbjct: 189 INAVVAKIQAKIPGAKRHAE 208
>ref|XP_003121890.2| PREDICTED: reticulon-1 isoform 1 [Sus scrofa].
Length = 770
Score = 171 bits (434), Expect = 5e-43
Identities = 89/191 (46%), Positives = 111/191 (58%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K K +DLLYWRDIK+TG AY+ALA LS TISFRIYK V+
Sbjct: 580 KQKAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 639
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QA+QK+DEGHPF+AYLE E+ +S+E +QKY++ +VN T+KE KF
Sbjct: 640 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 699
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 728
AVLMW+ TYV +PV+Y +HQAQID YLGL ++ +AKIQ
Sbjct: 700 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQ 759
Query: 729 AKIPGLKRKTE 761
AKIPG KR E
Sbjct: 760 AKIPGAKRHAE 770
>ref|XP_003122650.1| PREDICTED: reticulon-3 isoform 1 [Sus scrofa].
Length = 1016
Score = 153 bits (386), Expect = 2e-37
Identities = 76/186 (40%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 828 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 887
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K K AV
Sbjct: 888 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 947
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV VPV+YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 948 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 1007
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 1008 PGIAKK 1013
>ref|XP_003353848.1| PREDICTED: reticulon-3 isoform 2 [Sus scrofa].
Length = 241
Score = 117 bits (293), Expect = 1e-26
Identities = 60/155 (38%), Positives = 82/155 (52%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 48 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 107
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K K AV
Sbjct: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 167
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQ 662
MW+ TYV VPV+YE+++
Sbjct: 168 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYK 202
>ref|NP_001123432.1| reticulon-2 [Sus scrofa].
Length = 470
Score = 100 bits (248), Expect = 2e-21
Identities = 54/182 (29%), Positives = 83/182 (45%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DLLYW+D K +G A++AL LL TIS R+Y+ V+ +
Sbjct: 270 VADLLYWKDTKTSGVVFTGLMVSLLSLLHFSIVSVAAHVALLLLCGTISLRVYRKVLHTV 329
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
+ D +PF+AYL+ ++ ++ E ++ S V + K A+L
Sbjct: 330 HRGDGSNPFQAYLDVDLTLTREQTERLSQQIASRVVVAATQLRHFLLVEDLVDSLKLALL 389
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
++ T+V VP++Y +HQAQID Y+GL + AKI+AKI
Sbjct: 390 FYILTFVGAVFNGLTLLILGVIGLFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 449
Query: 738 PG 743
PG
Sbjct: 450 PG 451
>ref|XP_003125190.2| PREDICTED: reticulon-4-like [Sus scrofa].
Length = 1745
Score = 94.0 bits (232), Expect = 1e-19
Identities = 52/86 (60%), Positives = 57/86 (66%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVI
Sbjct: 1009 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 1068
Query: 369 QAIQKSDEGHPFRAYLESEVAISEEL 446
QAIQKSDEGHPF E+++S++L
Sbjct: 1069 QAIQKSDEGHPF----SLEISVSKQL 1090
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,717,860
Number of extensions: 538377
Number of successful extensions: 1146
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 7
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013015
(1064 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077188.1| reticulon-4 isoform C [Mus musculus]. 258 6e-69
Alignment gi|NP_918943.1| reticulon-4 isoform A [Mus musculus]. 239 2e-63
Alignment gi|NP_918940.1| reticulon-4 isoform D [Mus musculus]. 239 2e-63
Alignment gi|NP_918942.1| reticulon-4 isoform B2 [Mus musculus]. 238 6e-63
Alignment gi|NP_918941.1| reticulon-4 isoform B1 [Mus musculus]. 238 6e-63
Alignment gi|NP_001007597.1| reticulon-1 isoform RTN1-C [Mus musculus]. 177 1e-44
Alignment gi|NP_703187.2| reticulon-1 isoform RTN1-A [Mus musculus]. 171 9e-43
Alignment gi|NP_001003934.1| reticulon-3 isoform 1 [Mus musculus]. 153 3e-37
Alignment gi|NP_001003933.1| reticulon-3 isoform 2 [Mus musculus]. 153 3e-37
Alignment gi|NP_444306.1| reticulon-3 isoform 4 [Mus musculus]. 153 3e-37
>ref|NP_077188.1| reticulon-4 isoform C [Mus musculus].
Length = 199
Score = 258 bits (659), Expect = 6e-69
Identities = 139/199 (69%), Positives = 141/199 (70%)
Frame = +3
Query: 165 MDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTIS 344
MD QKK WKDKVVDLLYWRDIKKTG TAYIALALLSVTIS
Sbjct: 1 MDDQKKRWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS 60
Query: 345 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXX 524
FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVN TIKE
Sbjct: 61 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVD 120
Query: 525 XXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNV 704
KFAVLMWVFTYV +PVIYERHQAQIDHYLGLANK+V
Sbjct: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSV 180
Query: 705 KDAMAKIQAKIPGLKRKTE 761
KDAMAKIQAKIPGLKRK E
Sbjct: 181 KDAMAKIQAKIPGLKRKAE 199
>ref|NP_918943.1| reticulon-4 isoform A [Mus musculus].
Length = 1162
Score = 239 bits (611), Expect = 2e-63
Identities = 131/191 (68%), Positives = 133/191 (69%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVI
Sbjct: 972 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 1031
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVN TIKE KF
Sbjct: 1032 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKF 1091
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 728
AVLMWVFTYV +PVIYERHQAQIDHYLGLANK+VKDAMAKIQ
Sbjct: 1092 AVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQ 1151
Query: 729 AKIPGLKRKTE 761
AKIPGLKRK E
Sbjct: 1152 AKIPGLKRKAE 1162
>ref|NP_918940.1| reticulon-4 isoform D [Mus musculus].
Length = 1046
Score = 239 bits (611), Expect = 2e-63
Identities = 131/191 (68%), Positives = 133/191 (69%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVI
Sbjct: 856 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 915
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVN TIKE KF
Sbjct: 916 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKF 975
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 728
AVLMWVFTYV +PVIYERHQAQIDHYLGLANK+VKDAMAKIQ
Sbjct: 976 AVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQ 1035
Query: 729 AKIPGLKRKTE 761
AKIPGLKRK E
Sbjct: 1036 AKIPGLKRKAE 1046
>ref|NP_918942.1| reticulon-4 isoform B2 [Mus musculus].
Length = 375
Score = 238 bits (607), Expect = 6e-63
Identities = 130/188 (69%), Positives = 132/188 (70%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVIQAI
Sbjct: 188 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 247
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVN TIKE KFAVL
Sbjct: 248 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVL 307
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MWVFTYV +PVIYERHQAQIDHYLGLANK+VKDAMAKIQAKI
Sbjct: 308 MWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKI 367
Query: 738 PGLKRKTE 761
PGLKRK E
Sbjct: 368 PGLKRKAE 375
>ref|NP_918941.1| reticulon-4 isoform B1 [Mus musculus].
Length = 356
Score = 238 bits (607), Expect = 6e-63
Identities = 130/188 (69%), Positives = 132/188 (70%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVIQAI
Sbjct: 169 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 228
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVN TIKE KFAVL
Sbjct: 229 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVL 288
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MWVFTYV +PVIYERHQAQIDHYLGLANK+VKDAMAKIQAKI
Sbjct: 289 MWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKI 348
Query: 738 PGLKRKTE 761
PGLKRK E
Sbjct: 349 PGLKRKAE 356
>ref|NP_001007597.1| reticulon-1 isoform RTN1-C [Mus musculus].
Length = 208
Score = 177 bits (450), Expect = 1e-44
Identities = 91/200 (45%), Positives = 116/200 (58%)
Frame = +3
Query: 162 EMDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTI 341
+MD NWK + +DLLYWRDIK+TG AY+ALA LS TI
Sbjct: 9 KMDCVWSNWKSQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATI 68
Query: 342 SFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXX 521
SFRIYK V+QA+QK+DEGHPF+AYLE E+ +S+E +QKY++ +VN T+KE
Sbjct: 69 SFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLV 128
Query: 522 XXXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKN 701
KFAVLMW+ TYV +PV+Y +HQAQ+D YLGL +
Sbjct: 129 QDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTH 188
Query: 702 VKDAMAKIQAKIPGLKRKTE 761
+ +AKIQAKIPG KR E
Sbjct: 189 INTVVAKIQAKIPGAKRHAE 208
>ref|NP_703187.2| reticulon-1 isoform RTN1-A [Mus musculus].
Length = 780
Score = 171 bits (433), Expect = 9e-43
Identities = 88/191 (46%), Positives = 111/191 (58%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K K +DLLYWRDIK+TG AY+ALA LS TISFRIYK V+
Sbjct: 590 KQKAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 649
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QA+QK+DEGHPF+AYLE E+ +S+E +QKY++ +VN T+KE KF
Sbjct: 650 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKF 709
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 728
AVLMW+ TYV +PV+Y +HQAQ+D YLGL ++ +AKIQ
Sbjct: 710 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAKIQ 769
Query: 729 AKIPGLKRKTE 761
AKIPG KR E
Sbjct: 770 AKIPGAKRHAE 780
>ref|NP_001003934.1| reticulon-3 isoform 1 [Mus musculus].
Length = 964
Score = 153 bits (386), Expect = 3e-37
Identities = 76/186 (40%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 776 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 835
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ HVN +K K AV
Sbjct: 836 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 895
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV VP++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 896 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 955
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 956 PGIAKK 961
>ref|NP_001003933.1| reticulon-3 isoform 2 [Mus musculus].
Length = 945
Score = 153 bits (386), Expect = 3e-37
Identities = 76/186 (40%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 757 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 816
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ HVN +K K AV
Sbjct: 817 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 876
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV VP++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 877 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 936
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 937 PGIAKK 942
>ref|NP_444306.1| reticulon-3 isoform 4 [Mus musculus].
Length = 237
Score = 153 bits (386), Expect = 3e-37
Identities = 76/186 (40%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 49 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 108
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ HVN +K K AV
Sbjct: 109 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 168
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV VP++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 169 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 228
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 229 PGIAKK 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,362,278
Number of extensions: 749735
Number of successful extensions: 1735
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1707
Number of HSP's successfully gapped: 12
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013015
(1064 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008939.1| reticulon-4 isoform C [Homo sapiens]. 269 3e-72
Alignment gi|NP_997404.1| reticulon-4 isoform E [Homo sapiens]. 246 3e-65
Alignment gi|NP_065393.1| reticulon-4 isoform A [Homo sapiens]. 246 3e-65
Alignment gi|NP_722550.1| reticulon-4 isoform B [Homo sapiens]. 244 1e-64
Alignment gi|NP_997403.1| reticulon-4 isoform D [Homo sapiens]. 244 1e-64
Alignment gi|NP_996734.1| reticulon-1 isoform C [Homo sapiens]. 178 9e-45
Alignment gi|NP_066959.1| reticulon-1 isoform A [Homo sapiens]. 171 8e-43
Alignment gi|NP_958832.1| reticulon-3 isoform c [Homo sapiens]. 153 2e-37
Alignment gi|NP_958831.1| reticulon-3 isoform b [Homo sapiens]. 153 3e-37
Alignment gi|NP_006045.1| reticulon-3 isoform a [Homo sapiens]. 153 3e-37
>ref|NP_008939.1| reticulon-4 isoform C [Homo sapiens].
Length = 199
Score = 269 bits (688), Expect = 3e-72
Identities = 144/199 (72%), Positives = 144/199 (72%)
Frame = +3
Query: 165 MDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTIS 344
MDGQKKNWKDKVVDLLYWRDIKKTG TAYIALALLSVTIS
Sbjct: 1 MDGQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS 60
Query: 345 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXX 524
FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE
Sbjct: 61 FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD 120
Query: 525 XXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNV 704
KFAVLMWVFTYV VPVIYERHQAQIDHYLGLANKNV
Sbjct: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 180
Query: 705 KDAMAKIQAKIPGLKRKTE 761
KDAMAKIQAKIPGLKRK E
Sbjct: 181 KDAMAKIQAKIPGLKRKAE 199
>ref|NP_997404.1| reticulon-4 isoform E [Homo sapiens].
Length = 986
Score = 246 bits (627), Expect = 3e-65
Identities = 134/191 (70%), Positives = 134/191 (70%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVI
Sbjct: 796 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 855
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE KF
Sbjct: 856 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 915
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 728
AVLMWVFTYV VPVIYERHQAQIDHYLGLANKNVKDAMAKIQ
Sbjct: 916 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 975
Query: 729 AKIPGLKRKTE 761
AKIPGLKRK E
Sbjct: 976 AKIPGLKRKAE 986
>ref|NP_065393.1| reticulon-4 isoform A [Homo sapiens].
Length = 1192
Score = 246 bits (627), Expect = 3e-65
Identities = 134/191 (70%), Positives = 134/191 (70%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVI
Sbjct: 1002 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 1061
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE KF
Sbjct: 1062 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 1121
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 728
AVLMWVFTYV VPVIYERHQAQIDHYLGLANKNVKDAMAKIQ
Sbjct: 1122 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 1181
Query: 729 AKIPGLKRKTE 761
AKIPGLKRK E
Sbjct: 1182 AKIPGLKRKAE 1192
>ref|NP_722550.1| reticulon-4 isoform B [Homo sapiens].
Length = 373
Score = 244 bits (623), Expect = 1e-64
Identities = 133/188 (70%), Positives = 133/188 (70%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVIQAI
Sbjct: 186 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 245
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE KFAVL
Sbjct: 246 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 305
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MWVFTYV VPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI
Sbjct: 306 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 365
Query: 738 PGLKRKTE 761
PGLKRK E
Sbjct: 366 PGLKRKAE 373
>ref|NP_997403.1| reticulon-4 isoform D [Homo sapiens].
Length = 392
Score = 244 bits (623), Expect = 1e-64
Identities = 133/188 (70%), Positives = 133/188 (70%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
VVDLLYWRDIKKTG TAYIALALLSVTISFRIYKGVIQAI
Sbjct: 205 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 264
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKE KFAVL
Sbjct: 265 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 324
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MWVFTYV VPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI
Sbjct: 325 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 384
Query: 738 PGLKRKTE 761
PGLKRK E
Sbjct: 385 PGLKRKAE 392
>ref|NP_996734.1| reticulon-1 isoform C [Homo sapiens].
Length = 208
Score = 178 bits (451), Expect = 9e-45
Identities = 92/200 (46%), Positives = 116/200 (58%)
Frame = +3
Query: 162 EMDGQKKNWKDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTI 341
+MD NWK + +DLLYWRDIK+TG AY+ALA LS TI
Sbjct: 9 KMDCVWSNWKSQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATI 68
Query: 342 SFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXX 521
SFRIYK V+QA+QK+DEGHPF+AYLE E+ +S+E +QKY++ +VN T+KE
Sbjct: 69 SFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLV 128
Query: 522 XXXXXXXKFAVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKN 701
KFAVLMW+ TYV +PV+Y +HQAQID YLGL +
Sbjct: 129 QDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTH 188
Query: 702 VKDAMAKIQAKIPGLKRKTE 761
+ +AKIQAKIPG KR E
Sbjct: 189 INAVVAKIQAKIPGAKRHAE 208
>ref|NP_066959.1| reticulon-1 isoform A [Homo sapiens].
Length = 776
Score = 171 bits (434), Expect = 8e-43
Identities = 89/191 (46%), Positives = 111/191 (58%)
Frame = +3
Query: 189 KDKVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVI 368
K K +DLLYWRDIK+TG AY+ALA LS TISFRIYK V+
Sbjct: 586 KQKAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645
Query: 369 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKF 548
QA+QK+DEGHPF+AYLE E+ +S+E +QKY++ +VN T+KE KF
Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705
Query: 549 AVLMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 728
AVLMW+ TYV +PV+Y +HQAQID YLGL ++ +AKIQ
Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQ 765
Query: 729 AKIPGLKRKTE 761
AKIPG KR E
Sbjct: 766 AKIPGAKRHAE 776
>ref|NP_958832.1| reticulon-3 isoform c [Homo sapiens].
Length = 255
Score = 153 bits (387), Expect = 2e-37
Identities = 76/187 (40%), Positives = 105/187 (56%)
Frame = +3
Query: 195 KVVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQA 374
+V DL++WRD+KKTG +Y+ LALLSVTISFRIYK VIQA
Sbjct: 66 QVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 125
Query: 375 IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAV 554
+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K K AV
Sbjct: 126 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 185
Query: 555 LMWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK 734
MW+ TYV VP++YE+++ QIDHY+G+A K + KIQAK
Sbjct: 186 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 245
Query: 735 IPGLKRK 755
+PG+ +K
Sbjct: 246 LPGIAKK 252
>ref|NP_958831.1| reticulon-3 isoform b [Homo sapiens].
Length = 1013
Score = 153 bits (386), Expect = 3e-37
Identities = 76/186 (40%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFRIYK VIQA+
Sbjct: 825 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 884
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K K AV
Sbjct: 885 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 944
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV VP++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 945 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 1004
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 1005 PGIAKK 1010
>ref|NP_006045.1| reticulon-3 isoform a [Homo sapiens].
Length = 236
Score = 153 bits (386), Expect = 3e-37
Identities = 76/186 (40%), Positives = 104/186 (55%)
Frame = +3
Query: 198 VVDLLYWRDIKKTGXXXXXXXXXXXXXXXXXXXXXTAYIALALLSVTISFRIYKGVIQAI 377
V DL++WRD+KKTG +Y+ LALLSVTISFRIYK VIQA+
Sbjct: 48 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
Query: 378 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKEXXXXXXXXXXXXXXKFAVL 557
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K K AV
Sbjct: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
Query: 558 MWVFTYVXXXXXXXXXXXXXXXXXXXVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 737
MW+ TYV VP++YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 227
Query: 738 PGLKRK 755
PG+ +K
Sbjct: 228 PGIAKK 233
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,409,865
Number of extensions: 863988
Number of successful extensions: 1858
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1823
Number of HSP's successfully gapped: 14
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013015
(1064 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 650 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 650 bits (328), Expect = 0.0
Identities = 341/344 (99%), Gaps = 1/344 (0%)
Strand = Plus / Plus
Query: 722 aatccaagcgaaaatccctggattgaagcgaaaaactgaatgaaaaagtctgaaatactt 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90958239 aatccaagcgaaaatccctggattgaagcgaaaaactgaatgaaaaagtctgaaatactt 90958298
Query: 782 gtttatctagaggggatgttcatttgattccatgggggagggtcagggaagaatgaaacc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90958299 gtttatctagaggggatgttcatttgattccatgggggagggtcagggaagaatgaaacc 90958358
Query: 842 ttgacattgcagtgcagtttcacagatctttatttttagcagtgcagtgtctgaagaaaa 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 90958359 ttgacattgcagtgcagtttcacagatctttatttttagcagtgcagtgtctgaggaaaa 90958418
Query: 902 atgacctgtcttgactgccatgtgttcatcatcttaagtatcgtaagctgctatgtatgg 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90958419 atgacctgtcttgactgccatgtgttcatcatcttaagtatcgtaagctgctatgtatgg 90958478
Query: 962 atttaaaccgtaatcatttttgtttttcctatatgaagcactggtgaat-aaaaaagatc 1020
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 90958479 atttaaaccgtaatcatttttgtttttcctatatgaggcactggtgaataaaaaaagatc 90958538
Query: 1021 tgagaaagctgtatattacactttgttgcaggtagtcttgctgt 1064
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90958539 tgagaaagctgtatattacactttgttgcaggtagtcttgctgt 90958582
Score = 650 bits (328), Expect = 0.0
Identities = 341/344 (99%), Gaps = 1/344 (0%)
Strand = Plus / Plus
Query: 722 aatccaagcgaaaatccctggattgaagcgaaaaactgaatgaaaaagtctgaaatactt 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91201793 aatccaagcgaaaatccctggattgaagcgaaaaactgaatgaaaaagtctgaaatactt 91201852
Query: 782 gtttatctagaggggatgttcatttgattccatgggggagggtcagggaagaatgaaacc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91201853 gtttatctagaggggatgttcatttgattccatgggggagggtcagggaagaatgaaacc 91201912
Query: 842 ttgacattgcagtgcagtttcacagatctttatttttagcagtgcagtgtctgaagaaaa 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 91201913 ttgacattgcagtgcagtttcacagatctttatttttagcagtgcagtgtctgaggaaaa 91201972
Query: 902 atgacctgtcttgactgccatgtgttcatcatcttaagtatcgtaagctgctatgtatgg 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91201973 atgacctgtcttgactgccatgtgttcatcatcttaagtatcgtaagctgctatgtatgg 91202032
Query: 962 atttaaaccgtaatcatttttgtttttcctatatgaagcactggtgaat-aaaaaagatc 1020
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 91202033 atttaaaccgtaatcatttttgtttttcctatatgaggcactggtgaataaaaaaagatc 91202092
Query: 1021 tgagaaagctgtatattacactttgttgcaggtagtcttgctgt 1064
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91202093 tgagaaagctgtatattacactttgttgcaggtagtcttgctgt 91202136
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 198 gttgttgacctcctctactggagagacattaagaagactggagtggtgtttggtgccagc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91185716 gttgttgacctcctctactggagagacattaagaagactggagtggtgtttggtgccagc 91185775
Query: 258 ttattcctgctgctttcgttgacagtattcagcattgtgagtgtaacggcctacattgcc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91185776 ttattcctgctgctttcgttgacagtattcagcattgtgagtgtaacggcctacattgcc 91185835
Query: 318 ttggccctgctctctgtgactatcagctttaggatatataagggtgtgatccaagctatc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91185836 ttggccctgctctctgtgactatcagctttaggatatataagggtgtgatccaagctatc 91185895
Query: 378 cagaaatctgatgaaggccacccattcag 406
|||||||||||||||||||||||||||||
Sbjct: 91185896 cagaaatctgatgaaggccacccattcag 91185924
Score = 383 bits (193), Expect = e-103
Identities = 196/197 (99%)
Strand = Plus / Plus
Query: 2 acccagaacgcgtcaggtgactgcagttgtgcagcagaggagactgcagacttcggttga 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91048937 acccagaaggcgtcaggtgactgcagttgtgcagcagaggagactgcagacttcggttga 91048996
Query: 62 ggaaacatatttcatgtctcagggggtagatttttgcagttacagcttttctgttggtat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91048997 ggaaacatatttcatgtctcagggggtagatttttgcagttacagcttttctgttggtat 91049056
Query: 122 gcataattgataattgcatctggagggcagatcgtgacaagagatggacggtcagaagaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91049057 gcataattgataattgcatctggagggcagatcgtgacaagagatggacggtcagaagaa 91049116
Query: 182 aaattggaaggacaagg 198
|||||||||||||||||
Sbjct: 91049117 aaattggaaggacaagg 91049133
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 405 agagcatatttggaatctgaagttgctatatctgaggagttggttcagaaatacagtaat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91190265 agagcatatttggaatctgaagttgctatatctgaggagttggttcagaaatacagtaat 91190324
Query: 465 tctgctcttggtcatgtgaactgcacaataaaagaacttagacgcctcttcttagttgat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91190325 tctgctcttggtcatgtgaactgcacaataaaagaacttagacgcctcttcttagttgat 91190384
Query: 525 gatttagttgattctctgaag 545
|||||||||||||||||||||
Sbjct: 91190385 gatttagttgattctctgaag 91190405
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 544 agtttgcagtgttgatgtgggtatttacctatgttggtgccttgttcaatggtctgacac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90956668 agtttgcagtgttgatgtgggtatttacctatgttggtgccttgttcaatggtctgacac 90956727
Query: 604 tactgattttgg 615
||||||||||||
Sbjct: 90956728 tactgattttgg 90956739
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 544 agtttgcagtgttgatgtgggtatttacctatgttggtgccttgttcaatggtctgacac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91200221 agtttgcagtgttgatgtgggtatttacctatgttggtgccttgttcaatggtctgacac 91200280
Query: 604 tactgattttgg 615
||||||||||||
Sbjct: 91200281 tactgattttgg 91200292
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 661 aggcacagattgatcattatctaggacttgcaaataagaatgttaaagatgctatggcta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90957765 aggcacagattgatcattatctaggacttgcaaataagaatgttaaagatgctatggcta 90957824
Query: 721 a 721
|
Sbjct: 90957825 a 90957825
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 661 aggcacagattgatcattatctaggacttgcaaataagaatgttaaagatgctatggcta 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91201318 aggcacagattgatcattatctaggacttgcaaataagaatgttaaagatgctatggcta 91201377
Query: 721 a 721
|
Sbjct: 91201378 a 91201378
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 615 gctctgatttcactcttcagtgttcccgttatttatgaacggcatcagg 663
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90957251 gctctgatttcactcttcagtgttcccgttatttatgaacggcatcagg 90957299
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 615 gctctgatttcactcttcagtgttcccgttatttatgaacggcatcagg 663
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91200804 gctctgatttcactcttcagtgttcccgttatttatgaacggcatcagg 91200852
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,473,437
Number of extensions: 270
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 11
Length of query: 1064
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1043
Effective length of database: 2,808,413,156
Effective search space: 2929174921708
Effective search space used: 2929174921708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)