Animal-Genome cDNA 20110601C-013020

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013020
         (1969 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536059.2| PREDICTED: similar to fibronectin 1 isoform 1 p...   716   0.0  

>ref|XP_536059.2| PREDICTED: similar to fibronectin 1 isoform 1 preproprotein [Canis
            familiaris].
          Length = 2466

 Score =  716 bits (1849), Expect = 0.0
 Identities = 351/431 (81%), Positives = 356/431 (82%), Gaps = 25/431 (5%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEP TEY IQVIALKNNQKSEPLIGRK+T                        
Sbjct: 2062 TEATITGLEPGTEYTIQVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGPEILDVPS 2121

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPF+T PGYDTGNGIQLPGTSGQQPS+GQQMIFEEHGF                 P
Sbjct: 2122 TVQKTPFITNPGYDTGNGIQLPGTSGQQPSVGQQMIFEEHGFRRTTPPTTATPVRHRPRP 2181

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            Y PNVNEEIQV                         GQEALSQTTISWTPFQESSEYIIS
Sbjct: 2182 YPPNVNEEIQV-------------------------GQEALSQTTISWTPFQESSEYIIS 2216

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHK+REEVVTVGNSVD
Sbjct: 2217 CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKVREEVVTVGNSVD 2276

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            QGL+QPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG
Sbjct: 2277 QGLNQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 2336

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2337 VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2396

Query: 1058 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 1237
            ICSCTCFGGQRGWRCDNCRRPGAE G EGSTGH YNQYSQRYHQRTNTNVNCPIECFMPL
Sbjct: 2397 ICSCTCFGGQRGWRCDNCRRPGAEPGHEGSTGH-YNQYSQRYHQRTNTNVNCPIECFMPL 2455

Query: 1238 DVQADIEDSRE 1270
            DVQAD EDSRE
Sbjct: 2456 DVQADREDSRE 2466



 Score =  114 bits (285), Expect = 3e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 109  EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 167

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 168  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 227

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 228  CTCLGEGSG 236



 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 181  ECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 240

Query:

Animal-Genome cDNA 20110601C-013020


Animal-Genome cDNA 20110601C-013020


Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013020
         (1969 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001157250.1| fibronectin [Bos taurus].                         783   0.0  

>ref|NP_001157250.1| fibronectin [Bos taurus].
          Length = 2387

 Score =  783 bits (2023), Expect = 0.0
 Identities = 372/431 (86%), Positives = 380/431 (88%), Gaps = 25/431 (5%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEP TEY IQVIALKNNQKSEPLIGRK+T                        
Sbjct: 1957 TEATITGLEPGTEYTIQVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGPEILDVPS 2016

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPF+T PGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGF                 P
Sbjct: 2017 TVQKTPFITNPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFRRTTPPTTATPVRHRPRP 2076

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            Y PNVNEEIQ+GHVPRGDVDHHLYPHV+GLNPNASTGQEALSQTTISWTPFQESSEYIIS
Sbjct: 2077 YPPNVNEEIQIGHVPRGDVDHHLYPHVVGLNPNASTGQEALSQTTISWTPFQESSEYIIS 2136

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEA+KDQ+R K+REEVVTVGNSVD
Sbjct: 2137 CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEAVKDQQRQKVREEVVTVGNSVD 2196

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            QGLSQPTDDSCFDPYTVSHYAIGEEWERLS+SGFKLSCQCLGFGSGHFRCDSSKWCHDNG
Sbjct: 2197 QGLSQPTDDSCFDPYTVSHYAIGEEWERLSDSGFKLSCQCLGFGSGHFRCDSSKWCHDNG 2256

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2257 VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2316

Query: 1058 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 1237
            ICSCTCFGGQRGWRCDNCRRPGAE G EGST HSYNQYSQRYHQRTNTNVNCPIECFMPL
Sbjct: 2317 ICSCTCFGGQRGWRCDNCRRPGAEPGNEGSTAHSYNQYSQRYHQRTNTNVNCPIECFMPL 2376

Query: 1238 DVQADIEDSRE 1270
            DVQAD EDSRE
Sbjct: 2377 DVQADREDSRE 2387



 Score =  114 bits (286), Expect = 2e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 95   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 153

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 154  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDQAAGTSYVVGETWEKPYQGWMMVD 213

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 214  CTCLGEGSG 222



 Score = 99.0 bits (245), Expect = 1e-20
 Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 167  ECVCLGNGKGEWTCKPIAEKCFDQAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 226

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---------- 991
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H +          
Sbjct: 227  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSLQTTSAGSGS 286

Query: 992  ----------------------TCYDDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                                     D G  Y VG QW K        CTC G
Sbjct: 287  FTDVRTAIYQPQPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 338



 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    +G+ Y + + + ++ E 
Sbjct: 479  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDGITYNVNDTFHKRHEE 538

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQWQKEYLGAICSCTCFG-GQRGW 1096
            G M++CTC G G+G +KCDP +     + +T Y +G+ W+K   G    C C+G G   W
Sbjct: 539  GHMLNCTCFGQGRGRWKCDPVDQCQDSETRTFYQIGDSWEKYLQGVRYQCYCYGRGIGEW 598

Query: 1097 RC 1102
             C
Sbjct: 599  AC 600



 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D   G +Y +GE W++  + 
Sbjct: 149  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDQAAGTSYVVGETWEKPYQG 208

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 209  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 268

Query: 1094 WRCD 1105
            W+C+
Sbjct: 269  WKCE 272



 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  DG TY+V + + 
Sbjct: 474  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDGITYNVNDTFH 533

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCD 1105
            K +  G + +CTCFG  RG W+CD
Sbjct: 534  KRHEEGHMLNCTCFGQGRGRWKCD 557



 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 49   SKPGCYDNGKHYQINQQWERT-YLGSALVCTCYGGSRG-FNCESKPEPEETCFDKYTGNT 106

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 107  YRVGDTYERPKDSMIWDCTCIGAGRG 132



 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 24/56 (42%), Positives = 37/56 (66%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSY 1162
            CYD+GK Y + +QW++ YLG+   CTC+GG RG+ C++   P  E   +  TG++Y
Sbjct: 53   CYDNGKHYQINQQWERTYLGSALVCTCYGGSRGFNCESKPEP-EETCFDKYTGNTY 107



 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +2

Query: 707 SQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVN- 883
           SQ  D    D  T   Y + + + +  E G  L+C C G G G ++CD    C D+    
Sbjct: 513 SQLRDQCIVDGIT---YNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETRT 569

Query: 884 -YKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDP 982
            Y+IG+ W++  + G    C C G G GE+ C P
Sbjct: 570 FYQIGDSWEKYLQ-GVRYQCYCYGRGIGEWACQP 602


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,402,835
Number of extensions: 2082327
Number of successful extensions: 7678
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7630
Number of HSP's successfully gapped: 10
Length of query: 656
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 547
Effective length of database: 14,074,782
Effective search space: 7698905754
Effective search space used: 7698905754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---------- 991
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H +          
Sbjct: 241  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHASLQTTSTGSGP 300

Query: 992  ----------------------TCYDDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                                     D G  Y VG QW K        CTC G
Sbjct: 301  FTDVRTAIYQPQPHPQPAPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 352



 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 493  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFHKRHEE 552

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQWQKEYLGAICSCTCFG-GQRGW 1096
            G M++CTC G G+G +KCDP +     + +T Y +G+ W+K   G    C C+G G   W
Sbjct: 553  GHMLNCTCFGQGRGRWKCDPIDQCQDSETRTFYQIGDSWEKYVHGVRYQCYCYGRGIGEW 612

Query: 1097 RCDNCRRPGAELGP 1138
             C   +      GP
Sbjct: 613  HCQPLQTYPGTTGP 626



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 163  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 222

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 223  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 282

Query: 1094 WRCD 1105
            W+C+
Sbjct: 283  WKCE 286



 Score = 79.7 bits (195), Expect = 9e-15
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 488  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFH 547

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCD 1105
            K +  G + +CTCFG  RG W+CD
Sbjct: 548  KRHEEGHMLNCTCFGQGRGRWKCD 571



 Score = 64.3 bits (155), Expect = 4e-10
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            +S  C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 63   TSTGCYDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEPEETCFDKYTGNT 120

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 121  YRVGDTYERPKDSMIWDCTCIGAGRG 146



 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSY 1162
            CYD+GK Y + +QW++ YLG    CTC+GG RG+ C++   P  E   +  TG++Y
Sbjct: 67   CYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESKPEP-EETCFDKYTGNTY 121


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,561,343
Number of extensions: 2127903
Number of successful extensions: 7482
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7423
Number of HSP's successfully gapped: 9
Length of query: 656
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 547
Effective length of database: 15,240,880
Effective search space: 8336761360
Effective search space used: 8336761360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013020
         (1969 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003133689.1| PREDICTED: fibronectin isoform 1 [Sus scrofa].    814   0.0  
Alignment   gi|XP_003133690.1| PREDICTED: fibronectin isoform 2 [Sus scrofa].    814   0.0  
Alignment   gi|XP_003133691.1| PREDICTED: fibronectin isoform 3 [Sus scrofa].    612   e-175

>ref|XP_003133689.1| PREDICTED: fibronectin isoform 1 [Sus scrofa].
          Length = 2297

 Score =  814 bits (2102), Expect = 0.0
 Identities = 389/431 (90%), Positives = 389/431 (90%), Gaps = 25/431 (5%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEPATEY IQVIALKNNQKSEPLIGRKRT                        
Sbjct: 1867 TEATITGLEPATEYTIQVIALKNNQKSEPLIGRKRTDELPQLVTLPHPNLHGPEILDVPS 1926

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGF                GP
Sbjct: 1927 TVQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFRRTTPPTTATPVRHRPGP 1986

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS
Sbjct: 1987 YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 2046

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD
Sbjct: 2047 CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 2106

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG
Sbjct: 2107 QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 2166

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2167 VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2226

Query: 1058 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 1237
            ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL
Sbjct: 2227 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 2286

Query: 1238 DVQADIEDSRE 1270
            DVQADIEDSRE
Sbjct: 2287 DVQADIEDSRE 2297



 Score =  114 bits (284), Expect = 3e-25
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYD---DGKTYHVGEQWQKEYLG-AIC 1063
             W R  E  G M+ C CLGNGKGE+ C P    C+D    G +Y VGE W+K Y G  + 
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQGWMMV 212

Query: 1064 SCTCFGGQRG 1093
             CTC G   G
Sbjct: 213  DCTCLGEGSG 222



 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTV-SHYAIGEEWERLSESGFKLSCQCLGFGSGHFR 844
            E V +GN   +   +P  + CFD     + Y +GE WE+  +    + C CLG GSG   
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRIT 225

Query: 845  CDSSKWCHDNGV--NYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA--------- 991
            C S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H +         
Sbjct: 226  CTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSLQTTSAGSG 285

Query: 992  -----------------------TCYDDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                                      D G  Y VG QW K        CTC G
Sbjct: 286  SFTDVRTAIYQPQPHPQPAPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 338



 Score = 89.4 bits (220), Expect = 7e-18
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 479  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFHKRHEE 538

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQWQKEYLGAICSCTCFG-GQRGW 1096
            G M++CTC G G+G +KCDP +     + +T Y +G+ W+K   G    C C+G G   W
Sbjct: 539  GHMLNCTCFGQGRGRWKCDPVDQCQDSETRTFYQIGDSWEKYVHGVRYQCYCYGRGIGEW 598

Query: 1097 RCDNCRRPGAELGP 1138
             C   +      GP
Sbjct: 599  HCQPLQTYPGTTGP 612



 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN---GVNYKIGEKWDRQGE 919
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+   G +Y +GE W++  +
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQ 207

Query: 920  NGQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG 1093
               M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG
Sbjct: 208  GWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRG 267

Query: 1094 -WRCD 1105
             W+C+
Sbjct: 268  EWKCE 272



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 474  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFH 533

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCD 1105
            K +  G + +CTCFG  RG W+CD
Sbjct: 534  KRHEEGHMLNCTCFGQGRGRWKCD 557



 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +2

Query: 863  CHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKTYHVG 1027
            C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G TY VG
Sbjct: 52   CYDNGKHYQINQQWERT-YLGSALVCTCYGGSRG-FNCESKPEPEETCFDKYTGNTYRVG 109

Query: 1028 EQWQKEYLGAICSCTCFGGQRG 1093
            + +++     I  CTC G  RG
Sbjct: 110  DTYERPKDSMIWDCTCIGAGRG 131



 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 24/56 (42%), Positives = 37/56 (66%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSY 1162
            CYD+GK Y + +QW++ YLG+   CTC+GG RG+ C++   P  E   +  TG++Y
Sbjct: 52   CYDNGKHYQINQQWERTYLGSALVCTCYGGSRGFNCESKPEP-EETCFDKYTGNTY 106


>ref|XP_003133690.1| PREDICTED: fibronectin isoform 2 [Sus scrofa].
          Length = 2478

 Score =  814 bits (2102), Expect = 0.0
 Identities = 389/431 (90%), Positives = 389/431 (90%), Gaps = 25/431 (5%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEPATEY IQVIALKNNQKSEPLIGRKRT                        
Sbjct: 2048 TEATITGLEPATEYTIQVIALKNNQKSEPLIGRKRTDELPQLVTLPHPNLHGPEILDVPS 2107

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGF                GP
Sbjct: 2108 TVQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFRRTTPPTTATPVRHRPGP 2167

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS
Sbjct: 2168 YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 2227

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD
Sbjct: 2228 CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 2287

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG
Sbjct: 2288 QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 2347

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2348 VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2407

Query: 1058 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 1237
            ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL
Sbjct: 2408 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 2467

Query: 1238 DVQADIEDSRE 1270
            DVQADIEDSRE
Sbjct: 2468 DVQADIEDSRE 2478



 Score =  114 bits (284), Expect = 3e-25
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYD---DGKTYHVGEQWQKEYLG-AIC 1063
             W R  E  G M+ C CLGNGKGE+ C P    C+D    G +Y VGE W+K Y G  + 
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQGWMMV 212

Query: 1064 SCTCFGGQRG 1093
             CTC G   G
Sbjct: 213  DCTCLGEGSG 222



 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTV-SHYAIGEEWERLSESGFKLSCQCLGFGSGHFR 844
            E V +GN   +   +P  + CFD     + Y +GE WE+  +    + C CLG GSG   
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRIT 225

Query: 845  CDSSKWCHDNGV--NYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA--------- 991
            C S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H +         
Sbjct: 226  CTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSLQTTSAGSG 285

Query: 992  -----------------------TCYDDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                                      D G  Y VG QW K        CTC G
Sbjct: 286  SFTDVRTAIYQPQPHPQPAPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 338



 Score = 89.4 bits (220), Expect = 7e-18
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 479  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFHKRHEE 538

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQWQKEYLGAICSCTCFG-GQRGW 1096
            G M++CTC G G+G +KCDP +     + +T Y +G+ W+K   G    C C+G G   W
Sbjct: 539  GHMLNCTCFGQGRGRWKCDPVDQCQDSETRTFYQIGDSWEKYVHGVRYQCYCYGRGIGEW 598

Query: 1097 RCDNCRRPGAELGP 1138
             C   +      GP
Sbjct: 599  HCQPLQTYPGTTGP 612



 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN---GVNYKIGEKWDRQGE 919
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+   G +Y +GE W++  +
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQ 207

Query: 920  NGQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG 1093
               M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG
Sbjct: 208  GWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRG 267

Query: 1094 -WRCD 1105
             W+C+
Sbjct: 268  EWKCE 272



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 474  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFH 533

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCD 1105
            K +  G + +CTCFG  RG W+CD
Sbjct: 534  KRHEEGHMLNCTCFGQGRGRWKCD 557



 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +2

Query: 863  CHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKTYHVG 1027
            C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G TY VG
Sbjct: 52   CYDNGKHYQINQQWERT-YLGSALVCTCYGGSRG-FNCESKPEPEETCFDKYTGNTYRVG 109

Query: 1028 EQWQKEYLGAICSCTCFGGQRG 1093
            + +++     I  CTC G  RG
Sbjct: 110  DTYERPKDSMIWDCTCIGAGRG 131



 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 24/56 (42%), Positives = 37/56 (66%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSY 1162
            CYD+GK Y + +QW++ YLG+   CTC+GG RG+ C++   P  E   +  TG++Y
Sbjct: 52   CYDNGKHYQINQQWERTYLGSALVCTCYGGSRGFNCESKPEP-EETCFDKYTGNTY 106


>ref|XP_003133691.1| PREDICTED: fibronectin isoform 3 [Sus scrofa].
          Length = 2177

 Score =  612 bits (1579), Expect = e-175
 Identities = 304/412 (73%), Positives = 320/412 (77%), Gaps = 9/412 (2%)
 Frame = +2

Query: 62   TITGLEPATEYIIQVIALKNNQKSEPLIGRKRTVQKTPFVTKPGYDTGNGIQLPGTSGQQ 241
            TITGL+P T+Y I +  L +N +S P++    T    P   +    T N + +     + 
Sbjct: 1780 TITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRA 1839

Query: 242  PSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGPYTPNVNEEIQVGHVPRGDVDHHLYPHVL 421
               G  + +E+ G                     P V E    G  P  +        V+
Sbjct: 1840 KITGYIIKYEKPGSPPREVVPRPR----------PGVTEATITGLEPATEYTIQ----VI 1885

Query: 422  GLNPNAS---------TGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGTS 574
             L  N           TGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGTS
Sbjct: 1886 ALKNNQKSEPLIGRKRTGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGTS 1945

Query: 575  ASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVDQGLSQPTDDSCFDPYTVSH 754
            ASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVDQGLSQPTDDSCFDPYTVSH
Sbjct: 1946 ASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVDQGLSQPTDDSCFDPYTVSH 2005

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGEKWDRQGENGQMM 934
            YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGEKWDRQGENGQMM
Sbjct: 2006 YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGEKWDRQGENGQMM 2065

Query: 935  SCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCR 1114
            SCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCR
Sbjct: 2066 SCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCR 2125

Query: 1115 RPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADIEDSRE 1270
            RPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADIEDSRE
Sbjct: 2126 RPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADIEDSRE 2177



 Score =  114 bits (284), Expect = 3e-25
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYD---DGKTYHVGEQWQKEYLG-AIC 1063
             W R  E  G M+ C CLGNGKGE+ C P    C+D    G +Y VGE W+K Y G  + 
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQGWMMV 212

Query: 1064 SCTCFGGQRG 1093
             CTC G   G
Sbjct: 213  DCTCLGEGSG 222



 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 35/173 (20%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTV-SHYAIGEEWERLSESGFKLSCQCLGFGSGHFR 844
            E V +GN   +   +P  + CFD     + Y +GE WE+  +    + C CLG GSG   
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRIT 225

Query: 845  CDSSKWCHDNGV--NYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA--------- 991
            C S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H +         
Sbjct: 226  CTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSLQTTSAGSG 285

Query: 992  -----------------------TCYDDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                                      D G  Y VG QW K        CTC G
Sbjct: 286  SFTDVRTAIYQPQPHPQPAPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 338



 Score = 89.4 bits (220), Expect = 7e-18
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 479  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFHKRHEE 538

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQWQKEYLGAICSCTCFG-GQRGW 1096
            G M++CTC G G+G +KCDP +     + +T Y +G+ W+K   G    C C+G G   W
Sbjct: 539  GHMLNCTCFGQGRGRWKCDPVDQCQDSETRTFYQIGDSWEKYVHGVRYQCYCYGRGIGEW 598

Query: 1097 RCDNCRRPGAELGP 1138
             C   +      GP
Sbjct: 599  HCQPLQTYPGTTGP 612



 Score = 87.8 bits (216), Expect = 2e-17
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN---GVNYKIGEKWDRQGE 919
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+   G +Y +GE W++  +
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGGTSYVVGETWEKPYQ 207

Query: 920  NGQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG 1093
               M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG
Sbjct: 208  GWMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRG 267

Query: 1094 -WRCD 1105
             W+C+
Sbjct: 268  EWKCE 272



 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 474  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCVAYSQLRDQCIVDDITYNVNDTFH 533

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCD 1105
            K +  G + +CTCFG  RG W+CD
Sbjct: 534  KRHEEGHMLNCTCFGQGRGRWKCD 557



 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRTVQK 169
            TEATITGLEPATEY IQVIALKNNQKSEPLIGRKRT Q+
Sbjct: 1867 TEATITGLEPATEYTIQVIALKNNQKSEPLIGRKRTGQE 1905



 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = +2

Query: 863  CHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKTYHVG 1027
            C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G TY VG
Sbjct: 52   CYDNGKHYQINQQWERT-YLGSALVCTCYGGSRG-FNCESKPEPEETCFDKYTGNTYRVG 109

Query: 1028 EQWQKEYLGAICSCTCFGGQRG 1093
            + +++     I  CTC G  RG
Sbjct: 110  DTYERPKDSMIWDCTCIGAGRG 131



 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 24/56 (42%), Positives = 37/56 (66%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSY 1162
            CYD+GK Y + +QW++ YLG+   CTC+GG RG+ C++   P  E   +  TG++Y
Sbjct: 52   CYDNGKHYQINQQWERTYLGSALVCTCYGGSRGFNCESKPEP-EETCFDKYTGNTY 106


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,258,911
Number of extensions: 1352319
Number of successful extensions: 4892
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4785
Number of HSP's successfully gapped: 28
Length of query: 656
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 551
Effective length of database: 8,729,747
Effective search space: 4810090597
Effective search space used: 4810090597
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013020
         (1969 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034363.1| fibronectin precursor [Mus musculus].                738   0.0  

>ref|NP_034363.1| fibronectin precursor [Mus musculus].
          Length = 2477

 Score =  738 bits (1905), Expect = 0.0
 Identities = 347/432 (80%), Positives = 372/432 (86%), Gaps = 26/432 (6%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEP TEY I VIALKNNQKSEPLIGRK+T                        
Sbjct: 2046 TEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGPEILDVPS 2105

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPF+T PGYDT NGIQLPGT+ QQPS+GQQMIFEEHGF                 P
Sbjct: 2106 TVQKTPFITNPGYDTENGIQLPGTTHQQPSVGQQMIFEEHGFRRTTPPTAATPVRLRPRP 2165

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            Y PNV+EE+Q+GHVPRGDVD+HLYPHV GLNPNASTGQEALSQTTISWTPFQESSEYIIS
Sbjct: 2166 YLPNVDEEVQIGHVPRGDVDYHLYPHVPGLNPNASTGQEALSQTTISWTPFQESSEYIIS 2225

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            C PVG DEEPLQF+VPGTS SATLTGLTRG TYNIIVEAL++Q+RHK+REEVVTVGN+V 
Sbjct: 2226 CQPVGTDEEPLQFQVPGTSTSATLTGLTRGVTYNIIVEALQNQRRHKVREEVVTVGNAVS 2285

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            +GL+QPTDDSCFDPYTVSHYAIGEEWERLS++GFKL+CQCLGFGSGHFRCDSSKWCHDNG
Sbjct: 2286 EGLNQPTDDSCFDPYTVSHYAIGEEWERLSDAGFKLTCQCLGFGSGHFRCDSSKWCHDNG 2345

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQ MSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2346 VNYKIGEKWDRQGENGQRMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2405

Query: 1058 ICSCTCFGGQRGWRCDNCRRPG-AELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMP 1234
            ICSCTCFGGQRGWRCDNCRRPG AE  P+G+TGH+YNQY+QRY+QRTNTNVNCPIECFMP
Sbjct: 2406 ICSCTCFGGQRGWRCDNCRRPGAAEPSPDGTTGHTYNQYTQRYNQRTNTNVNCPIECFMP 2465

Query: 1235 LDVQADIEDSRE 1270
            LDVQAD +DSRE
Sbjct: 2466 LDVQADRDDSRE 2477



 Score =  116 bits (291), Expect = 6e-26
 Identities = 56/129 (43%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 95   EETCFDKYTGNTYKVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 153

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
            KW R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 154  KWRRPHETGGYMLECLCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 213

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 214  CTCLGEGNG 222



 Score = 97.1 bits (240), Expect = 5e-20
 Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 33/171 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E + +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG G+G   C
Sbjct: 167  ECLCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGNGRITC 226

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCD-------------- 979
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+              
Sbjct: 227  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCVCTGNGRGEWKCERHALQSASAGSGSF 286

Query: 980  -----------------PHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                             P+     D G  Y VG QW K        CTC G
Sbjct: 287  TDVRTAIYQPQTHPQPAPYGHCVTDSGVVYSVGMQWLKSQGNKQMLCTCLG 337



 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG++W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 149  YKIGDKWRRPHETGGYMLECLCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 208

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 209  WMMVDCTCLGEGNGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCVCTGNGRGE 268

Query: 1094 WRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNC 1213
            W+C+      A  G    T      Y  + H +     +C
Sbjct: 269  WKCERHALQSASAGSGSFTDVRTAIYQPQTHPQPAPYGHC 308



 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C       D    + + Y + + + ++ E 
Sbjct: 478  YRIGDQWDKQHDLGHMMRCTCVGNGRGEWACIPYSQLRDQCIVDDITYNVNDTFHKRHEE 537

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQWQKEYLGAICSCTCFG-GQRGW 1096
            G M++CTC G G+G +KCDP +     + +T Y +G+ W+K   G    C C+G G   W
Sbjct: 538  GHMLNCTCFGQGRGRWKCDPIDQCQDSETRTFYQIGDSWEKFVHGVRYQCYCYGRGIGEW 597

Query: 1097 RCDNCRRPGAELGP 1138
             C   +      GP
Sbjct: 598  HCQPLQTYPGTTGP 611



 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C P+      C  D  TY+V + + 
Sbjct: 473  NEGVMYRIGDQWDKQHDLGHMMRCTCVGNGRGEWACIPYSQLRDQCIVDDITYNVNDTFH 532

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCD 1105
            K +  G + +CTCFG  RG W+CD
Sbjct: 533  KRHEEGHMLNCTCFGQGRGRWKCD 556



 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 49   SKPGCFDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEPEETCFDKYTGNT 106

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 107  YKVGDTYERPKDSMIWDCTCIGAGRG 132



 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 23/56 (41%), Positives = 36/56 (64%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSY 1162
            C+D+GK Y + +QW++ YLG    CTC+GG RG+ C++   P  E   +  TG++Y
Sbjct: 53   CFDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESKPEP-EETCFDKYTGNTY 107


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 66,824,331
Number of extensions: 1796705
Number of successful extensions: 6355
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6310
Number of HSP's successfully gapped: 9
Length of query: 656
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 548
Effective length of database: 12,373,671
Effective search space: 6780771708
Effective search space used: 6780771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013020
         (1969 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_997647.1| fibronectin isoform 1 preproprotein [Homo sapie...   753   0.0  
Alignment   gi|NP_997641.1| fibronectin isoform 5 preproprotein [Homo sapie...   753   0.0  
Alignment   gi|NP_997643.1| fibronectin isoform 4 preproprotein [Homo sapie...   698   0.0  
Alignment   gi|NP_002017.1| fibronectin isoform 3 preproprotein [Homo sapie...   684   0.0  
Alignment   gi|NP_997639.1| fibronectin isoform 6 preproprotein [Homo sapie...   582   e-166
Alignment   gi|NP_473375.2| fibronectin isoform 7 preproprotein [Homo sapie...   114   3e-25

>ref|NP_997647.1| fibronectin isoform 1 preproprotein [Homo sapiens].
          Length = 2477

 Score =  753 bits (1944), Expect = 0.0
 Identities = 354/431 (82%), Positives = 371/431 (86%), Gaps = 25/431 (5%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEP TEY I VIALKNNQKSEPLIGRK+T                        
Sbjct: 2047 TEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGPEILDVPS 2106

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPFVT PGYDTGNGIQLPGTSGQQPS+GQQMIFEEHGF                 P
Sbjct: 2107 TVQKTPFVTHPGYDTGNGIQLPGTSGQQPSVGQQMIFEEHGFRRTTPPTTATPIRHRPRP 2166

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            Y PNV EEIQ+GH+PR DVD+HLYPH  GLNPNASTGQEALSQTTISW PFQ++SEYIIS
Sbjct: 2167 YPPNVGEEIQIGHIPREDVDYHLYPHGPGLNPNASTGQEALSQTTISWAPFQDTSEYIIS 2226

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            CHPVG DEEPLQFRVPGTS SATLTGLTRGATYNIIVEALKDQ+RHK+REEVVTVGNSV+
Sbjct: 2227 CHPVGTDEEPLQFRVPGTSTSATLTGLTRGATYNIIVEALKDQQRHKVREEVVTVGNSVN 2286

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            +GL+QPTDDSCFDPYTVSHYA+G+EWER+SESGFKL CQCLGFGSGHFRCDSS+WCHDNG
Sbjct: 2287 EGLNQPTDDSCFDPYTVSHYAVGDEWERMSESGFKLLCQCLGFGSGHFRCDSSRWCHDNG 2346

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2347 VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2406

Query: 1058 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 1237
            ICSCTCFGGQRGWRCDNCRRPG E  PEG+TG SYNQYSQRYHQRTNTNVNCPIECFMPL
Sbjct: 2407 ICSCTCFGGQRGWRCDNCRRPGGEPSPEGTTGQSYNQYSQRYHQRTNTNVNCPIECFMPL 2466

Query: 1238 DVQADIEDSRE 1270
            DVQAD EDSRE
Sbjct: 2467 DVQADREDSRE 2477



 Score =  114 bits (285), Expect = 3e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 212

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 213  CTCLGEGSG 221



 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 225

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH------------ 985
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H            
Sbjct: 226  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSVQTTSSGSGP 285

Query: 986  ----EATCY----------------DDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                 A  Y                D G  Y VG QW K        CTC G
Sbjct: 286  FTDVRAAVYQPQPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 337



 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 478  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEE 537

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLGAICSCTCFG-GQRG 1093
            G M++CTC G G+G +KCDP +  C D   G  Y +G+ W+K   G    C C+G G   
Sbjct: 538  GHMLNCTCFGQGRGRWKCDPVD-QCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGE 596

Query: 1094 WRCDNCRRPGAELGP 1138
            W C   +   +  GP
Sbjct: 597  WHCQPLQTYPSSSGP 611



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 207

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 208  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 267

Query: 1094 WRCD 1105
            W+C+
Sbjct: 268  WKCE 271



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 473  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFH 532

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCDNCRR-PGAELGPEGSTGHSYNQY 1171
            K +  G + +CTCFG  RG W+CD   +   +E G     G S+ +Y
Sbjct: 533  KRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKY 579



 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 48   SKPGCYDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEAEETCFDKYTGNT 105

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 106  YRVGDTYERPKDSMIWDCTCIGAGRG 131



 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAE 1129
            CYD+GK Y + +QW++ YLG    CTC+GG RG+ C++  +P AE
Sbjct: 52   CYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES--KPEAE 94


>ref|NP_997641.1| fibronectin isoform 5 preproprotein [Homo sapiens].
          Length = 2296

 Score =  753 bits (1944), Expect = 0.0
 Identities = 354/431 (82%), Positives = 371/431 (86%), Gaps = 25/431 (5%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEP TEY I VIALKNNQKSEPLIGRK+T                        
Sbjct: 1866 TEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGPEILDVPS 1925

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPFVT PGYDTGNGIQLPGTSGQQPS+GQQMIFEEHGF                 P
Sbjct: 1926 TVQKTPFVTHPGYDTGNGIQLPGTSGQQPSVGQQMIFEEHGFRRTTPPTTATPIRHRPRP 1985

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            Y PNV EEIQ+GH+PR DVD+HLYPH  GLNPNASTGQEALSQTTISW PFQ++SEYIIS
Sbjct: 1986 YPPNVGEEIQIGHIPREDVDYHLYPHGPGLNPNASTGQEALSQTTISWAPFQDTSEYIIS 2045

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            CHPVG DEEPLQFRVPGTS SATLTGLTRGATYNIIVEALKDQ+RHK+REEVVTVGNSV+
Sbjct: 2046 CHPVGTDEEPLQFRVPGTSTSATLTGLTRGATYNIIVEALKDQQRHKVREEVVTVGNSVN 2105

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            +GL+QPTDDSCFDPYTVSHYA+G+EWER+SESGFKL CQCLGFGSGHFRCDSS+WCHDNG
Sbjct: 2106 EGLNQPTDDSCFDPYTVSHYAVGDEWERMSESGFKLLCQCLGFGSGHFRCDSSRWCHDNG 2165

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2166 VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2225

Query: 1058 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 1237
            ICSCTCFGGQRGWRCDNCRRPG E  PEG+TG SYNQYSQRYHQRTNTNVNCPIECFMPL
Sbjct: 2226 ICSCTCFGGQRGWRCDNCRRPGGEPSPEGTTGQSYNQYSQRYHQRTNTNVNCPIECFMPL 2285

Query: 1238 DVQADIEDSRE 1270
            DVQAD EDSRE
Sbjct: 2286 DVQADREDSRE 2296



 Score =  114 bits (285), Expect = 3e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 212

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 213  CTCLGEGSG 221



 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 225

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH------------ 985
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H            
Sbjct: 226  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSVQTTSSGSGP 285

Query: 986  ----EATCY----------------DDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                 A  Y                D G  Y VG QW K        CTC G
Sbjct: 286  FTDVRAAVYQPQPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 337



 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 478  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEE 537

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLGAICSCTCFG-GQRG 1093
            G M++CTC G G+G +KCDP +  C D   G  Y +G+ W+K   G    C C+G G   
Sbjct: 538  GHMLNCTCFGQGRGRWKCDPVD-QCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGE 596

Query: 1094 WRCDNCRRPGAELGP 1138
            W C   +   +  GP
Sbjct: 597  WHCQPLQTYPSSSGP 611



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 207

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 208  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 267

Query: 1094 WRCD 1105
            W+C+
Sbjct: 268  WKCE 271



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 473  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFH 532

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCDNCRR-PGAELGPEGSTGHSYNQY 1171
            K +  G + +CTCFG  RG W+CD   +   +E G     G S+ +Y
Sbjct: 533  KRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKY 579



 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 48   SKPGCYDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEAEETCFDKYTGNT 105

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 106  YRVGDTYERPKDSMIWDCTCIGAGRG 131



 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAE 1129
            CYD+GK Y + +QW++ YLG    CTC+GG RG+ C++  +P AE
Sbjct: 52   CYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES--KPEAE 94


>ref|NP_997643.1| fibronectin isoform 4 preproprotein [Homo sapiens].
          Length = 2330

 Score =  698 bits (1801), Expect = 0.0
 Identities = 330/406 (81%), Positives = 344/406 (84%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRTVQKTPFVTKPGYDTGNGIQLPGTS 232
            TEATITGLEP TEY I VIALKNNQKSEPLIGRK+TVQKTPFVT PGYDTGNGIQLPGTS
Sbjct: 1956 TEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKTVQKTPFVTHPGYDTGNGIQLPGTS 2015

Query: 233  GQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGPYTPNVNEEIQVGHVPRGDVDHHLYP 412
            GQQPS+GQQMIFEEHGF                 PY PNV                    
Sbjct: 2016 GQQPSVGQQMIFEEHGFRRTTPPTTATPIRHRPRPYPPNV-------------------- 2055

Query: 413  HVLGLNPNASTGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGTSASATLT 592
                       GQEALSQTTISW PFQ++SEYIISCHPVG DEEPLQFRVPGTS SATLT
Sbjct: 2056 -----------GQEALSQTTISWAPFQDTSEYIISCHPVGTDEEPLQFRVPGTSTSATLT 2104

Query: 593  GLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEE 772
            GLTRGATYNIIVEALKDQ+RHK+REEVVTVGNSV++GL+QPTDDSCFDPYTVSHYA+G+E
Sbjct: 2105 GLTRGATYNIIVEALKDQQRHKVREEVVTVGNSVNEGLNQPTDDSCFDPYTVSHYAVGDE 2164

Query: 773  WERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLG 952
            WER+SESGFKL CQCLGFGSGHFRCDSS+WCHDNGVNYKIGEKWDRQGENGQMMSCTCLG
Sbjct: 2165 WERMSESGFKLLCQCLGFGSGHFRCDSSRWCHDNGVNYKIGEKWDRQGENGQMMSCTCLG 2224

Query: 953  NGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAEL 1132
            NGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPG E 
Sbjct: 2225 NGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGGEP 2284

Query: 1133 GPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADIEDSRE 1270
             PEG+TG SYNQYSQRYHQRTNTNVNCPIECFMPLDVQAD EDSRE
Sbjct: 2285 SPEGTTGQSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADREDSRE 2330



 Score =  114 bits (285), Expect = 3e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 212

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 213  CTCLGEGSG 221



 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 225

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH------------ 985
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H            
Sbjct: 226  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSVQTTSSGSGP 285

Query: 986  ----EATCY----------------DDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                 A  Y                D G  Y VG QW K        CTC G
Sbjct: 286  FTDVRAAVYQPQPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 337



 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 478  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEE 537

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLGAICSCTCFG-GQRG 1093
            G M++CTC G G+G +KCDP +  C D   G  Y +G+ W+K   G    C C+G G   
Sbjct: 538  GHMLNCTCFGQGRGRWKCDPVD-QCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGE 596

Query: 1094 WRCDNCRRPGAELGP 1138
            W C   +   +  GP
Sbjct: 597  WHCQPLQTYPSSSGP 611



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 207

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 208  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 267

Query: 1094 WRCD 1105
            W+C+
Sbjct: 268  WKCE 271



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 473  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFH 532

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCDNCRR-PGAELGPEGSTGHSYNQY 1171
            K +  G + +CTCFG  RG W+CD   +   +E G     G S+ +Y
Sbjct: 533  KRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKY 579



 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 48   SKPGCYDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEAEETCFDKYTGNT 105

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 106  YRVGDTYERPKDSMIWDCTCIGAGRG 131



 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAE 1129
            CYD+GK Y + +QW++ YLG    CTC+GG RG+ C++  +P AE
Sbjct: 52   CYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES--KPEAE 94


>ref|NP_002017.1| fibronectin isoform 3 preproprotein [Homo sapiens].
          Length = 2355

 Score =  684 bits (1765), Expect = 0.0
 Identities = 330/431 (76%), Positives = 344/431 (79%), Gaps = 25/431 (5%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRT------------------------ 160
            TEATITGLEP TEY I VIALKNNQKSEPLIGRK+T                        
Sbjct: 1956 TEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKTDELPQLVTLPHPNLHGPEILDVPS 2015

Query: 161  -VQKTPFVTKPGYDTGNGIQLPGTSGQQPSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGP 337
             VQKTPFVT PGYDTGNGIQLPGTSGQQPS+GQQMIFEEHGF                 P
Sbjct: 2016 TVQKTPFVTHPGYDTGNGIQLPGTSGQQPSVGQQMIFEEHGFRRTTPPTTATPIRHRPRP 2075

Query: 338  YTPNVNEEIQVGHVPRGDVDHHLYPHVLGLNPNASTGQEALSQTTISWTPFQESSEYIIS 517
            Y PNV                               GQEALSQTTISW PFQ++SEYIIS
Sbjct: 2076 YPPNV-------------------------------GQEALSQTTISWAPFQDTSEYIIS 2104

Query: 518  CHPVGIDEEPLQFRVPGTSASATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVD 697
            CHPVG DEEPLQFRVPGTS SATLTGLTRGATYNIIVEALKDQ+RHK+REEVVTVGNSV+
Sbjct: 2105 CHPVGTDEEPLQFRVPGTSTSATLTGLTRGATYNIIVEALKDQQRHKVREEVVTVGNSVN 2164

Query: 698  QGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNG 877
            +GL+QPTDDSCFDPYTVSHYA+G+EWER+SESGFKL CQCLGFGSGHFRCDSS+WCHDNG
Sbjct: 2165 EGLNQPTDDSCFDPYTVSHYAVGDEWERMSESGFKLLCQCLGFGSGHFRCDSSRWCHDNG 2224

Query: 878  VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 1057
            VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA
Sbjct: 2225 VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGA 2284

Query: 1058 ICSCTCFGGQRGWRCDNCRRPGAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPL 1237
            ICSCTCFGGQRGWRCDNCRRPG E  PEG+TG SYNQYSQRYHQRTNTNVNCPIECFMPL
Sbjct: 2285 ICSCTCFGGQRGWRCDNCRRPGGEPSPEGTTGQSYNQYSQRYHQRTNTNVNCPIECFMPL 2344

Query: 1238 DVQADIEDSRE 1270
            DVQAD EDSRE
Sbjct: 2345 DVQADREDSRE 2355



 Score =  114 bits (285), Expect = 3e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 212

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 213  CTCLGEGSG 221



 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 225

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH------------ 985
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H            
Sbjct: 226  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSVQTTSSGSGP 285

Query: 986  ----EATCY----------------DDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                 A  Y                D G  Y VG QW K        CTC G
Sbjct: 286  FTDVRAAVYQPQPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 337



 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 478  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEE 537

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLGAICSCTCFG-GQRG 1093
            G M++CTC G G+G +KCDP +  C D   G  Y +G+ W+K   G    C C+G G   
Sbjct: 538  GHMLNCTCFGQGRGRWKCDPVD-QCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGE 596

Query: 1094 WRCDNCRRPGAELGP 1138
            W C   +   +  GP
Sbjct: 597  WHCQPLQTYPSSSGP 611



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 207

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 208  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 267

Query: 1094 WRCD 1105
            W+C+
Sbjct: 268  WKCE 271



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 473  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFH 532

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCDNCRR-PGAELGPEGSTGHSYNQY 1171
            K +  G + +CTCFG  RG W+CD   +   +E G     G S+ +Y
Sbjct: 533  KRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKY 579



 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 48   SKPGCYDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEAEETCFDKYTGNT 105

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 106  YRVGDTYERPKDSMIWDCTCIGAGRG 131



 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAE 1129
            CYD+GK Y + +QW++ YLG    CTC+GG RG+ C++  +P AE
Sbjct: 52   CYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES--KPEAE 94


>ref|NP_997639.1| fibronectin isoform 6 preproprotein [Homo sapiens].
          Length = 2176

 Score =  582 bits (1499), Expect = e-166
 Identities = 283/410 (69%), Positives = 313/410 (76%), Gaps = 7/410 (1%)
 Frame = +2

Query: 62   TITGLEPATEYIIQVIALKNNQKSEPLIGRKRTVQKTPFVTKPGYDTGNGIQLPGTSGQQ 241
            TITGL+P T+Y I +  L +N +S P++    T    P   +    T N + +     + 
Sbjct: 1779 TITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRA 1838

Query: 242  PSLGQQMIFEEHGFXXXXXXXXXXXXXXXXGPYTPNVNEEIQVGHVPRGDVDHHLYPHVL 421
               G  + +E+ G                     P V E    G  P    ++ +Y   L
Sbjct: 1839 RITGYIIKYEKPGSPPREVVPRPR----------PGVTEATITGLEP--GTEYTIYVIAL 1886

Query: 422  GLNPNAS-------TGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGTSAS 580
              N  +        TGQEALSQTTISW PFQ++SEYIISCHPVG DEEPLQFRVPGTS S
Sbjct: 1887 KNNQKSEPLIGRKKTGQEALSQTTISWAPFQDTSEYIISCHPVGTDEEPLQFRVPGTSTS 1946

Query: 581  ATLTGLTRGATYNIIVEALKDQKRHKIREEVVTVGNSVDQGLSQPTDDSCFDPYTVSHYA 760
            ATLTGLTRGATYNIIVEALKDQ+RHK+REEVVTVGNSV++GL+QPTDDSCFDPYTVSHYA
Sbjct: 1947 ATLTGLTRGATYNIIVEALKDQQRHKVREEVVTVGNSVNEGLNQPTDDSCFDPYTVSHYA 2006

Query: 761  IGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGEKWDRQGENGQMMSC 940
            +G+EWER+SESGFKL CQCLGFGSGHFRCDSS+WCHDNGVNYKIGEKWDRQGENGQMMSC
Sbjct: 2007 VGDEWERMSESGFKLLCQCLGFGSGHFRCDSSRWCHDNGVNYKIGEKWDRQGENGQMMSC 2066

Query: 941  TCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRP 1120
            TCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRP
Sbjct: 2067 TCLGNGKGEFKCDPHEATCYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRP 2126

Query: 1121 GAELGPEGSTGHSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADIEDSRE 1270
            G E  PEG+TG SYNQYSQRYHQRTNTNVNCPIECFMPLDVQAD EDSRE
Sbjct: 2127 GGEPSPEGTTGQSYNQYSQRYHQRTNTNVNCPIECFMPLDVQADREDSRE 2176



 Score =  114 bits (285), Expect = 3e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 212

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 213  CTCLGEGSG 221



 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 225

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH------------ 985
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H            
Sbjct: 226  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSVQTTSSGSGP 285

Query: 986  ----EATCY----------------DDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                 A  Y                D G  Y VG QW K        CTC G
Sbjct: 286  FTDVRAAVYQPQPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 337



 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 478  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEE 537

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLGAICSCTCFG-GQRG 1093
            G M++CTC G G+G +KCDP +  C D   G  Y +G+ W+K   G    C C+G G   
Sbjct: 538  GHMLNCTCFGQGRGRWKCDPVD-QCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGE 596

Query: 1094 WRCDNCRRPGAELGP 1138
            W C   +   +  GP
Sbjct: 597  WHCQPLQTYPSSSGP 611



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 207

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 208  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 267

Query: 1094 WRCD 1105
            W+C+
Sbjct: 268  WKCE 271



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 473  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFH 532

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCDNCRR-PGAELGPEGSTGHSYNQY 1171
            K +  G + +CTCFG  RG W+CD   +   +E G     G S+ +Y
Sbjct: 533  KRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKY 579



 Score = 67.0 bits (162), Expect = 6e-11
 Identities = 33/39 (84%), Positives = 35/39 (89%)
 Frame = +2

Query: 53   TEATITGLEPATEYIIQVIALKNNQKSEPLIGRKRTVQK 169
            TEATITGLEP TEY I VIALKNNQKSEPLIGRK+T Q+
Sbjct: 1866 TEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKKTGQE 1904



 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 48   SKPGCYDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEAEETCFDKYTGNT 105

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 106  YRVGDTYERPKDSMIWDCTCIGAGRG 131



 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAE 1129
            CYD+GK Y + +QW++ YLG    CTC+GG RG+ C++  +P AE
Sbjct: 52   CYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES--KPEAE 94


>ref|NP_473375.2| fibronectin isoform 7 preproprotein [Homo sapiens].
          Length = 657

 Score =  114 bits (285), Expect = 3e-25
 Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 719  DDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHDNGVNYKIGE 898
            +++CFD YT + Y +G+ +ER  +S     C C+G G G   C  +  CH+ G +YKIG+
Sbjct: 94   EETCFDKYTGNTYRVGDTYERPKDSMI-WDCTCIGAGRGRISCTIANRCHEGGQSYKIGD 152

Query: 899  KWDRQGE-NGQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLG-AICS 1066
             W R  E  G M+ C CLGNGKGE+ C P    C+D   G +Y VGE W+K Y G  +  
Sbjct: 153  TWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVD 212

Query: 1067 CTCFGGQRG 1093
            CTC G   G
Sbjct: 213  CTCLGEGSG 221



 Score = 99.8 bits (247), Expect = 8e-21
 Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
 Frame = +2

Query: 668  EVVTVGNSVDQGLSQPTDDSCFDPYTVSHYAIGEEWERLSESGFKLSCQCLGFGSGHFRC 847
            E V +GN   +   +P  + CFD    + Y +GE WE+  +    + C CLG GSG   C
Sbjct: 166  ECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQGWMMVDCTCLGEGSGRITC 225

Query: 848  DSSKWCHDNG--VNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH------------ 985
             S   C+D     +Y+IG+ W ++   G ++ C C GNG+GE+KC+ H            
Sbjct: 226  TSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCERHTSVQTTSSGSGP 285

Query: 986  ----EATCY----------------DDGKTYHVGEQWQKEYLGAICSCTCFG 1081
                 A  Y                D G  Y VG QW K        CTC G
Sbjct: 286  FTDVRAAVYQPQPHPQPPPYGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLG 337



 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESGFKLSCQCLGFGSGHFRCDSSKWCHD----NGVNYKIGEKWDRQGEN 922
            Y IG++W++  + G  + C C+G G G + C +     D    + + Y + + + ++ E 
Sbjct: 478  YRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEE 537

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDD--GKTYHVGEQWQKEYLGAICSCTCFG-GQRG 1093
            G M++CTC G G+G +KCDP +  C D   G  Y +G+ W+K   G    C C+G G   
Sbjct: 538  GHMLNCTCFGQGRGRWKCDPVD-QCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGE 596

Query: 1094 WRCDNCRRPGAELGP 1138
            W C   +   +  GP
Sbjct: 597  WHCQPLQTYPSSSGP 611



 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
 Frame = +2

Query: 755  YAIGEEWERLSESG-FKLSCQCLGFGSGHFRCDS-SKWCHDN--GVNYKIGEKWDRQGEN 922
            Y IG+ W R  E+G + L C CLG G G + C   ++ C D+  G +Y +GE W++  + 
Sbjct: 148  YKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPIAEKCFDHAAGTSYVVGETWEKPYQG 207

Query: 923  GQMMSCTCLGNGKGEFKCDPHEATCYDDGKT-YHVGEQW-QKEYLGAICSCTCFGGQRG- 1093
              M+ CTCLG G G   C         D +T Y +G+ W +K+  G +  C C G  RG 
Sbjct: 208  WMMVDCTCLGEGSGRITCTSRNRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGE 267

Query: 1094 WRCD 1105
            W+C+
Sbjct: 268  WKCE 271



 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
 Frame = +2

Query: 869  DNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPHEA---TCYDDGKTYHVGEQWQ 1039
            + GV Y+IG++WD+Q + G MM CTC+GNG+GE+ C  +      C  D  TY+V + + 
Sbjct: 473  NEGVMYRIGDQWDKQHDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDDITYNVNDTFH 532

Query: 1040 KEY-LGAICSCTCFGGQRG-WRCDNCRR-PGAELGPEGSTGHSYNQY 1171
            K +  G + +CTCFG  RG W+CD   +   +E G     G S+ +Y
Sbjct: 533  KRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKY 579



 Score = 63.9 bits (154), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 851  SSKWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH---EATCYD--DGKT 1015
            S   C+DNG +Y+I ++W+R    G  + CTC G  +G F C+     E TC+D   G T
Sbjct: 48   SKPGCYDNGKHYQINQQWERT-YLGNALVCTCYGGSRG-FNCESKPEAEETCFDKYTGNT 105

Query: 1016 YHVGEQWQKEYLGAICSCTCFGGQRG 1093
            Y VG+ +++     I  CTC G  RG
Sbjct: 106  YRVGDTYERPKDSMIWDCTCIGAGRG 131



 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = +2

Query: 995  CYDDGKTYHVGEQWQKEYLGAICSCTCFGGQRGWRCDNCRRPGAE 1129
            CYD+GK Y + +QW++ YLG    CTC+GG RG+ C++  +P AE
Sbjct: 52   CYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES--KPEAE 94


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,415,569
Number of extensions: 2112826
Number of successful extensions: 7912
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7745
Number of HSP's successfully gapped: 56
Length of query: 656
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 547
Effective length of database: 14,704,088
Effective search space: 8043136136
Effective search space used: 8043136136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013020
         (1969 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                        1330   0.0  
Sscrofa_Chr13                                                         129   6e-27

>Sscrofa_Chr15 
||          Length = 157681621

 Score = 1330 bits (671), Expect = 0.0
 Identities = 712/722 (98%), Gaps = 4/722 (0%)
 Strand = Plus / Minus

                                                                             
Query: 1202      aatgtcaactgcccaattgagtgcttcatgcctttagatgtacaggctgacatagaagat 1261
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358651 aatgtcaactgcccaattgagtgcttcatgcctttagatgtacaggctgacatagaagat 130358592

                                                                             
Query: 1262      tcccgagagtaaaatttccaagctggagaaacaagcacggatctctgccaaggtccatcc 1321
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358591 tcccgagagtaaaatttccaagctggagaaacaagcacggatctctgccaaggtccatcc 130358532

                                                                             
Query: 1322      aaactggagtgatgttagcagaccccatcccagtttgtttctttcttaagccctttgctc 1381
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358531 aaactggagtgatgttagcagaccccatcccagtttgtttctttcttaagccctttgctc 130358472

                                                                             
Query: 1382      tggagtaatttcttcagcttcagctcaactcacagcttctccaagcatcaccctgggagt 1441
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358471 tggagtaatttcttcagcttcagctcaactcacagcttctccaagcatcaccctgggagt 130358412

                                                                             
Query: 1442      gttttgagacttttctcataaatggcagtacatggcctgctctccaaagtgttcagtacc 1501
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358411 gttttgagacttttctcataaatggcagtacatggcctgctctccaaagtgttcagtacc 130358352

                                                                             
Query: 1502      gctcaatattttaaatgaaatgattctaacttgtgatctgaattgggatcagtagggttg 1561
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358351 gctcaatattttaaatgaaatgattctaacttgtgatctgaattgggatcagtagggttg 130358292

                                                                             
Query: 1562      cacatgtaccaaccaagatgcaaaatgtcttgaaatgatattaccaaaaattttaagtag 1621
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358291 cacatgtaccaaccaagatgcaaaatgtcttgaaatgatattaccaaaaattttaagtag 130358232

                                                                             
Query: 1622      gaaagttacccaaacacttctgcttccacttaactgtctggcccgcaatattgtaggaac 1681
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358231 gaaagttacccaaacacttctgcttccacttaactgtctggcccgcaatattgtaggaac 130358172

                                                                             
Query: 1682      agcatatccttgttactgtgatatttaaaatatccacagtactcactttttccagatgac 1741
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130358171 agcatatccttgttactgtgatatttaaaatatccacagtactcactttttccagatgac 130358112

                                                                             
Query: 1742      tttggtaattgccttagaatatctttctcttacctggtatttatcaatttttcccagtat 1801
                 ||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 130358111 tttggtaattgcctagaaatatctttctcttacctgttatttatcaatttttcccagtat 130358052

                                                                             
Query: 1802      ttttatatggaatcaaattgtattgaagacagttagtaggcagttgataagaggaattt- 1860
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 130358051 ttttatatggaatcaaattgtattgaagacagttagtaggcagttgataagaggaatttg 130357992

                                                                             
Query: 1861      gtataattatggttggggat--atttttatactgtacgtgccaaagcttt-ctactgtgg 1917
                 |||||||||||||||| |||   ||||||||||||||||||||||||||| |||||||||
Sbjct: 130357991 gtataattatggttggtgattattttttatactgtacgtgccaaagctttactactgtgg 130357932

                   
Query: 1918      aa 1919
                 ||
Sbjct: 130357931 aa 130357930



 Score =  777 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                             
Query: 158       acagttcaaaagacccctttcgtcaccaaacccgggtatgacactggaaacggtattcag 217
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130369248 acagttcaaaagacccctttcgtcaccaaacccgggtatgacactggaaacggtattcag 130369189

                                                                             
Query: 218       cttcctggcacttctggtcagcagcccagtcttgggcaacaaatgatctttgaggagcat 277
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130369188 cttcctggcacttctggtcagcagcccagtcttgggcaacaaatgatctttgaggagcat 130369129

                                                                             
Query: 278       ggttttaggagaaccacaccgcccacaacggccacccccgtaaggcataggccaggaccg 337
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130369128 ggttttaggagaaccacaccgcccacaacggccacccccgtaaggcataggccaggaccg 130369069

                                                                             
Query: 338       tatacgccgaatgtaaatgaggagatccaagttggtcatgtccccaggggagacgtagac 397
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130369068 tatacgccgaatgtaaatgaggagatccaagttggtcatgtccccaggggagacgtagac 130369009

                                                                             
Query: 398       caccacctctaccctcacgttctgggactcaatccaaatgcttctacaggacaagaagct 457
                 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130369008 catcacctctaccctcacgttctgggactcaatccaaatgcttctacaggacaagaagct 130368949

                                                                             
Query: 458       ctctctcagacaaccatctcatggaccccattccaggaaagctctgaatatatcatttca 517
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130368948 ctctctcagacaaccatctcatggaccccattccaggaaagctctgaatatatcatttca 130368889

                                                     
Query: 518       tgtcatcccgtgggcattgatgaagaacccttgcag 553
                 ||||||||||||||||||||||||||||||||||||
Sbjct: 130368888 tgtcatcccgtgggcattgatgaagaacccttgcag 130368853



 Score =  329 bits (166), Expect = 3e-87
 Identities = 166/166 (100%)
 Strand = Plus / Minus

                                                                             
Query: 692       gttgaccaaggcctaagccaacccacggatgactcgtgcttcgacccctacacggtttcc 751
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130365261 gttgaccaaggcctaagccaacccacggatgactcgtgcttcgacccctacacggtttcc 130365202

                                                                             
Query: 752       cattatgccatcggagaagagtgggagcgattatctgaatctggctttaagctctcgtgc 811
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130365201 cattatgccatcggagaagagtgggagcgattatctgaatctggctttaagctctcgtgc 130365142

                                                               
Query: 812       cagtgcttaggctttggcagtggtcatttcagatgtgattcatcta 857
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130365141 cagtgcttaggctttggcagtggtcatttcagatgtgattcatcta 130365096



 Score =  287 bits (145), Expect = 1e-74
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                             
Query: 548       ttgcagttccgagttcctggaacttctgctagtgccaccttgacgggtctcaccagaggt 607
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130367916 ttgcagttccgagttcctggaacttctgctagtgccaccttgacgggtctcaccagaggt 130367857

                                                                             
Query: 608       gccacctacaacatcatagtggaggcactaaaagaccagaagaggcacaagattcgggag 667
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130367856 gccacctacaacatcatagtggaggcactaaaagaccagaagaggcacaagattcgggag 130367797

                                          
Query: 668       gaggtggttactgtgggcaattctg 692
                 |||||||||||||||||||||||||
Sbjct: 130367796 gaggtggttactgtgggcaattctg 130367772



 Score =  250 bits (126), Expect = 3e-63
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                             
Query: 858       aatggtgccatgacaatggtgtgaattacaagattggagagaagtgggatcgtcagggag 917
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130362963 aatggtgccatgacaatggtgtgaattacaagattggagagaagtgggatcgtcagggag 130362904

                                                                             
Query: 918       agaatggccagatgatgagctgcacatgtctcggaaatggaaaaggagaattcaagtgtg 977
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130362903 agaatggccagatgatgagctgcacatgtctcggaaatggaaaaggagaattcaagtgtg 130362844

                       
Query: 978       atcccc 983
                 ||||||
Sbjct: 130362843 atcccc 130362838



 Score =  222 bits (112), Expect = 6e-55
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1090      gggctggcgctgtgacaactgccgcagaccaggggctgaactcggtcccgaaggctccac 1149
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130359378 gggctggcgctgtgacaactgccgcagaccaggggctgaactcggtcccgaaggctccac 130359319

                                                                     
Query: 1150      cgggcactcctacaaccagtattcacagagataccatcagagaacaaacacc 1201
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130359318 cgggcactcctacaaccagtattcacagagataccatcagagaacaaacacc 130359267



 Score =  206 bits (104), Expect = 3e-50
 Identities = 107/108 (99%)
 Strand = Plus / Minus

                                                                             
Query: 984       atgaagcgacgtgttatgatgatgggaagacataccatgtgggagaacagtggcagaagg 1043
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130362317 atgaagcgacgtgttatgatgatgggaagacataccatgtgggagaacagtggcagaagg 130362258

                                                                 
Query: 1044      aatatctcggtgccatttgctcctgcacatgctttggaggccagcggg 1091
                 |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 130362257 aatatctcggtgccatttgctcctgcacgtgctttggaggccagcggg 130362210



 Score =  172 bits (87), Expect = 5e-40
 Identities = 90/91 (98%)
 Strand = Plus / Minus

                                                                             
Query: 71        ggtctggaaccagcaaccgagtacataatccaggtcattgccctcaagaacaatcagaag 130
                 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 130370356 ggtctggaaccagcaaccgagtacacaatccaggtcattgccctcaagaacaatcagaag 130370297

                                                
Query: 131       agtgagcctctgatcgggaggaaaaggacag 161
                 |||||||||||||||||||||||||||||||
Sbjct: 130370296 agtgagcctctgatcgggaggaaaaggacag 130370266



 Score =  145 bits (73), Expect = 1e-31
 Identities = 73/73 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         gaagcctgggtcccctcccagagaagtggtccctcggccccgccctggtgtcacagaagc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130371850 gaagcctgggtcccctcccagagaagtggtccctcggccccgccctggtgtcacagaagc 130371791

                              
Query: 61        tactattactggt 73
                 |||||||||||||
Sbjct: 130371790 tactattactggt 130371778


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  129 bits (65), Expect = 6e-27
 Identities = 184/216 (85%), Gaps = 7/216 (3%)
 Strand = Plus / Plus

                                                                             
Query: 1707      taaaatatccacagtactcactttttccagatgactttggtaattgccttagaatatctt 1766
                 |||||||| ||||||||||||||||||||| ||| | |  |||||||||   ||||||||
Sbjct: 157903634 taaaatattcacagtactcactttttccaggtgattctaataattgcctagaaatatctt 157903693

                                                                             
Query: 1767      tctcttacctggt-atttatcaatttttcccagtatttttatatggaatcaaattgtatt 1825
                  || || |||||| ||||||||||||| ||||| ||||||||||||||  |||||  || 
Sbjct: 157903694 -ctatttcctggttatttatcaatttt-cccaggatttttatatggaaaaaaattacatc 157903751

                                                                             
Query: 1826      gaagacagttagtaggcagttgataagaggaattt-gtataattatggttggggat--at 1882
                 ||||||| |||||| | |||||||||||||||||| |||||||||||||||| |||   |
Sbjct: 157903752 gaagacaattagtatgaagttgataagaggaatttggtataattatggttggtgattatt 157903811

                                                     
Query: 1883      ttttatactgtacgtgccaaagcttt-ctactgtgg 1917
                 |||||||||||||  || |||||||| |||||||||
Sbjct: 157903812 ttttatactgtacccgcaaaagctttactactgtgg 157903847



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                           
Query: 1683      gcatatccttgttactgtgatatttaaaatatccacagtact 1724
                 |||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 157903325 gcatgtccttgttactgtgatatttaaaatattcacagtact 157903366


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,780,792
Number of extensions: 419
Number of successful extensions: 419
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 11
Length of query: 1969
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1947
Effective length of database: 2,808,408,574
Effective search space: 5467971493578
Effective search space used: 5467971493578
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)