Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013028
(1896 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039445.1| dolichyl-diphosphooligosaccharide--protein g... 1024 0.0
Alignment gi|NP_001091039.1| dolichyl-diphosphooligosaccharide--protein g... 586 e-167
>ref|NP_001039445.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3A [Bos taurus].
Length = 705
Score = 1024 bits (2647), Expect = 0.0
Identities = 511/527 (96%), Positives = 512/527 (97%), Gaps = 1/527 (0%)
Frame = +1
Query: 115 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 294
MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL
Sbjct: 1 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 60
Query: 295 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 474
AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA
Sbjct: 61 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 120
Query: 475 PLFSSFTTIVTYHLTKELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 654
PLFSSFTTIVTYHLTKELKD MIAVVPGYISRSVAGSYDNEGIAIFCMLLTY
Sbjct: 121 PLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 180
Query: 655 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 834
YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY
Sbjct: 181 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 240
Query: 835 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 1014
CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR
Sbjct: 241 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 300
Query: 1015 SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 1194
SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY
Sbjct: 301 SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 360
Query: 1195 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 1374
YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI
Sbjct: 361 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 420
Query: 1375 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 1554
GVSQVLSTYMKNLDISR DKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS
Sbjct: 421 GVSQVLSTYMKNLDISRQDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 480
Query: 1555 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE K+ WD
Sbjct: 481 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWD 527
>ref|NP_001091039.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3B [Bos taurus].
Length = 822
Score = 586 bits (1511), Expect = e-167
Identities = 290/538 (53%), Positives = 376/538 (69%), Gaps = 27/538 (5%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 66 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 125
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 126 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 185
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 186 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 245
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 246 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 305
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 306 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 365
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 366 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 425
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 426 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 484
Query: 1420 SRP--------------------DKKSKKQQDSTYPIKNE------VASGMILVMAFFLI 1521
R DK K ++ T K E + S + ++M L+
Sbjct: 485 KRENPPVEDSSDEDDKRNPGNLYDKAGKVRKHVTEQEKTEEGLGPNIKSIVTMLMLMLLM 544
Query: 1522 TYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
+ H TWVTS AYSSPS+VL++ DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 545 MFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 602
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 69,305,584
Number of extensions: 1751730
Number of successful extensions: 4972
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4970
Number of HSP's successfully gapped: 2
Length of query: 632
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 524
Effective length of database: 14,107,870
Effective search space: 7392523880
Effective search space used: 7392523880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013028
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013028
(1896 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858091.1| PREDICTED: similar to Oligosaccharyl transferas... 1026 0.0
Alignment gi|XP_546418.2| PREDICTED: similar to Oligosaccharyl transferas... 1026 0.0
Alignment gi|XP_858006.1| PREDICTED: similar to Oligosaccharyl transferas... 973 0.0
Alignment gi|XP_862005.1| PREDICTED: similar to source of immunodominant ... 593 e-169
Alignment gi|XP_861976.1| PREDICTED: similar to source of immunodominant ... 592 e-169
Alignment gi|XP_861844.1| PREDICTED: similar to source of immunodominant ... 592 e-169
Alignment gi|XP_861670.1| PREDICTED: similar to source of immunodominant ... 592 e-169
Alignment gi|XP_861816.1| PREDICTED: similar to source of immunodominant ... 591 e-169
Alignment gi|XP_861787.1| PREDICTED: similar to source of immunodominant ... 590 e-168
Alignment gi|XP_861901.1| PREDICTED: similar to source of immunodominant ... 589 e-168
>ref|XP_858091.1| PREDICTED: similar to Oligosaccharyl transferase STT3 subunit homolog
(B5) (Integral membrane protein 1) isoform 3 [Canis
familiaris].
Length = 705
Score = 1026 bits (2654), Expect = 0.0
Identities = 511/527 (96%), Positives = 513/527 (97%), Gaps = 1/527 (0%)
Frame = +1
Query: 115 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 294
MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL
Sbjct: 1 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 60
Query: 295 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 474
AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA
Sbjct: 61 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 120
Query: 475 PLFSSFTTIVTYHLTKELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 654
PLFSSFTTIVTYHLTKELKD MIAVVPGYISRSVAGSYDNEGIAIFCMLLTY
Sbjct: 121 PLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 180
Query: 655 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 834
YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY
Sbjct: 181 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 240
Query: 835 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 1014
CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR
Sbjct: 241 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 300
Query: 1015 SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 1194
SVISLVGFVLLT+GALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY
Sbjct: 301 SVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 360
Query: 1195 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 1374
YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI
Sbjct: 361 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 420
Query: 1375 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 1554
GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS
Sbjct: 421 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 480
Query: 1555 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE K+ WD
Sbjct: 481 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWD 527
>ref|XP_546418.2| PREDICTED: similar to Oligosaccharyl transferase STT3 subunit homolog
(B5) (Integral membrane protein 1) isoform 1 [Canis
familiaris].
Length = 705
Score = 1026 bits (2654), Expect = 0.0
Identities = 511/527 (96%), Positives = 513/527 (97%), Gaps = 1/527 (0%)
Frame = +1
Query: 115 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 294
MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL
Sbjct: 1 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 60
Query: 295 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 474
AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA
Sbjct: 61 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 120
Query: 475 PLFSSFTTIVTYHLTKELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 654
PLFSSFTTIVTYHLTKELKD MIAVVPGYISRSVAGSYDNEGIAIFCMLLTY
Sbjct: 121 PLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 180
Query: 655 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 834
YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY
Sbjct: 181 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 240
Query: 835 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 1014
CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR
Sbjct: 241 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 300
Query: 1015 SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 1194
SVISLVGFVLLT+GALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY
Sbjct: 301 SVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 360
Query: 1195 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 1374
YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI
Sbjct: 361 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 420
Query: 1375 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 1554
GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS
Sbjct: 421 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 480
Query: 1555 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE K+ WD
Sbjct: 481 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWD 527
>ref|XP_858006.1| PREDICTED: similar to Oligosaccharyl transferase STT3 subunit homolog
(B5) (Integral membrane protein 1) isoform 2 [Canis
familiaris].
Length = 690
Score = 973 bits (2516), Expect = 0.0
Identities = 481/498 (96%), Positives = 484/498 (97%), Gaps = 1/498 (0%)
Frame = +1
Query: 202 SFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDRAWYPLGRIIGGTIY 381
+FSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDRAWYPLGRIIGGTIY
Sbjct: 15 AFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDRAWYPLGRIIGGTIY 74
Query: 382 PGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLTKELKDXXXXXXXXX 561
PGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLTKELKD
Sbjct: 75 PGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLTKELKDAGAGLLAAA 134
Query: 562 MIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYFYMVSSW 741
MIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYFYMVSSW
Sbjct: 135 MIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYFYMVSSW 194
Query: 742 GGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMA 921
GGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMA
Sbjct: 195 GGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMA 254
Query: 922 AFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGALLMLTGKISPWTGR 1101
AFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLT+GALLMLTGKISPWTGR
Sbjct: 255 AFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLTGKISPWTGR 314
Query: 1102 FYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIFI 1281
FYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIFI
Sbjct: 315 FYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIFI 374
Query: 1282 IMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDISRPDKKSKKQQDST 1461
IMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDISRPDKKSKKQQDST
Sbjct: 375 IMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDISRPDKKSKKQQDST 434
Query: 1462 YPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAY 1641
YPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAY
Sbjct: 435 YPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAY 494
Query: 1642 YWLRHNTPE-VKIWEEWD 1692
YWLRHNTPE K+ WD
Sbjct: 495 YWLRHNTPEDAKVMSWWD 512
>ref|XP_862005.1| PREDICTED: similar to source of immunodominant MHC-associated
peptides isoform 14 [Canis familiaris].
Length = 796
Score = 593 bits (1530), Expect = e-169
Identities = 287/512 (56%), Positives = 374/512 (73%), Gaps = 1/512 (0%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 488
Query: 1420 SRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGG 1599
R + K ++ IK+ V M++++ F + H TWVTS AYSSPS+VL++
Sbjct: 489 KRENPPEKTEEGLGPNIKSIVTMLMLMLLMMFAV----HCTWVTSNAYSSPSVVLASYNH 544
Query: 1600 DGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 545 DGTRNILDDFREAYFWLRQNTDEHARVMSWWD 576
>ref|XP_861976.1| PREDICTED: similar to source of immunodominant MHC-associated
peptides isoform 13 [Canis familiaris].
Length = 793
Score = 592 bits (1526), Expect = e-169
Identities = 288/512 (56%), Positives = 376/512 (73%), Gaps = 1/512 (0%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 488
Query: 1420 SRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGG 1599
R ++ +DS+ IK+ V M++++ F + H TWVTS AYSSPS+VL++
Sbjct: 489 KR---ENPPVEDSSPNIKSIVTMLMLMLLMMFAV----HCTWVTSNAYSSPSVVLASYNH 541
Query: 1600 DGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 542 DGTRNILDDFREAYFWLRQNTDEHARVMSWWD 573
>ref|XP_861844.1| PREDICTED: similar to source of immunodominant MHC-associated
peptides isoform 8 [Canis familiaris].
Length = 808
Score = 592 bits (1526), Expect = e-169
Identities = 288/520 (55%), Positives = 375/520 (72%), Gaps = 9/520 (1%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 488
Query: 1420 SR---PDKKSKKQQDSTYP-----IKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPS 1575
R P + S + D P + + S + ++M L+ + H TWVTS AYSSPS
Sbjct: 489 KRENPPVEDSSDEDDKRNPGNFPGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYSSPS 548
Query: 1576 IVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
+VL++ DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 549 VVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 588
>ref|XP_861670.1| PREDICTED: similar to source of immunodominant MHC-associated
peptides isoform 2 [Canis familiaris].
Length = 802
Score = 592 bits (1526), Expect = e-169
Identities = 288/520 (55%), Positives = 375/520 (72%), Gaps = 9/520 (1%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 488
Query: 1420 SR---PDKKSKKQQDSTYP-----IKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPS 1575
R P + S + D P + + S + ++M L+ + H TWVTS AYSSPS
Sbjct: 489 KRENPPVEDSSDEDDKRNPGNFPGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYSSPS 548
Query: 1576 IVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
+VL++ DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 549 VVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 588
>ref|XP_861816.1| PREDICTED: similar to source of immunodominant MHC-associated
peptides isoform 7 [Canis familiaris].
Length = 810
Score = 591 bits (1524), Expect = e-169
Identities = 286/521 (54%), Positives = 374/521 (71%), Gaps = 10/521 (1%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKN--- 1410
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ +
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGDDMK 489
Query: 1411 ------LDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSP 1572
D S+ K +Q+ + + + S + ++M L+ + H TWVTS AYSSP
Sbjct: 490 RENPPVEDSSKVRKHVTEQEKTEEGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYSSP 549
Query: 1573 SIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
S+VL++ DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 550 SVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 590
>ref|XP_861787.1| PREDICTED: similar to source of immunodominant MHC-associated
peptides isoform 6 [Canis familiaris].
Length = 799
Score = 590 bits (1522), Expect = e-168
Identities = 288/515 (55%), Positives = 373/515 (72%), Gaps = 4/515 (0%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 488
Query: 1420 SR---PDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSA 1590
R P + S + D P V M++++ F + H TWVTS AYSSPS+VL++
Sbjct: 489 KRENPPVEDSSDEDDKRNPGNFIVTMLMLMLLMMFAV----HCTWVTSNAYSSPSVVLAS 544
Query: 1591 RGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 545 YNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 579
>ref|XP_861901.1| PREDICTED: similar to source of immunodominant MHC-associated
peptides isoform 10 [Canis familiaris].
Length = 815
Score = 589 bits (1519), Expect = e-168
Identities = 290/531 (54%), Positives = 375/531 (70%), Gaps = 20/531 (3%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 488
Query: 1420 SRPDKKSKKQQDSTYPIKNE-------------------VASGMILVMAFFLITYTFHST 1542
R + K Q PI NE + S + ++M L+ + H T
Sbjct: 489 KRENPPVLKYQ----PISNENSWKHVTEQEKTEEGLGPNIKSIVTMLMLMLLMMFAVHCT 544
Query: 1543 WVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
WVTS AYSSPS+VL++ DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 545 WVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 595
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 72,301,641
Number of extensions: 1806352
Number of successful extensions: 5114
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5097
Number of HSP's successfully gapped: 18
Length of query: 632
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 523
Effective length of database: 15,240,880
Effective search space: 7970980240
Effective search space used: 7970980240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013028
(1896 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230781.1| STT3, subunit of the oligosaccharyltransfera... 1025 0.0
Alignment gi|XP_003132136.2| PREDICTED: dolichyl-diphosphooligosaccharide... 543 e-154
>ref|NP_001230781.1| STT3, subunit of the oligosaccharyltransferase complex, homolog A
[Sus scrofa].
Length = 705
Score = 1025 bits (2650), Expect = 0.0
Identities = 511/527 (96%), Positives = 512/527 (97%), Gaps = 1/527 (0%)
Frame = +1
Query: 115 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 294
MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL
Sbjct: 1 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 60
Query: 295 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 474
AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA
Sbjct: 61 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 120
Query: 475 PLFSSFTTIVTYHLTKELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 654
PLFSSFTTIVTYHLTKELKD MIAVVPGYISRSVAGSYDNEGIAIFCMLLTY
Sbjct: 121 PLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 180
Query: 655 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 834
YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY
Sbjct: 181 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 240
Query: 835 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 1014
CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR
Sbjct: 241 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 300
Query: 1015 SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 1194
SVISLVGFVLLTIGALLMLTGKISPWTGRFY LLDPSYAKNNIPIIASVSEHQPTTWSSY
Sbjct: 301 SVISLVGFVLLTIGALLMLTGKISPWTGRFYPLLDPSYAKNNIPIIASVSEHQPTTWSSY 360
Query: 1195 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 1374
YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI
Sbjct: 361 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 420
Query: 1375 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 1554
GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS
Sbjct: 421 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 480
Query: 1555 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE K+ WD
Sbjct: 481 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWD 527
>ref|XP_003132136.2| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase subunit STT3B [Sus scrofa].
Length = 822
Score = 543 bits (1398), Expect = e-154
Identities = 268/503 (53%), Positives = 349/503 (69%), Gaps = 27/503 (5%)
Frame = +1
Query: 265 YFNYRTTRFLAEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITI 444
+FNYR+T LA GFY+F NWFD+RAWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+
Sbjct: 101 WFNYRSTHHLASHGFYEFLNWFDERAWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITV 160
Query: 445 DIRNVCVFLAPLFSSFTTIVTYHLTKELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEG 624
IR+VCVFLAP FS T+I T+ LT+EL + IA+VPGYISRSVAGS+DNEG
Sbjct: 161 HIRDVCVFLAPTFSGLTSISTFLLTRELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEG 220
Query: 625 IAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTG 804
IAIF + TYY+W+K+VKTGS++W C L+YFYMVS+WGGYVF+INLIPLHV VL+L
Sbjct: 221 IAIFALQFTYYLWVKSVKTGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQ 280
Query: 805 RFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKL 984
R+S R+Y+AY T Y +G ILSMQI FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L
Sbjct: 281 RYSKRVYIAYSTFYIVGLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRL 340
Query: 985 NPQQFEVLFRSVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVS 1164
Q+F+ LF +SL + L TG I+PW+GRFYSL D YAK +IPIIASVS
Sbjct: 341 TKQEFQTLFFLGVSLAAGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVS 400
Query: 1165 EHQPTTWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVL 1344
EHQPTTW S++FDL +LV FP GL++C N++D R+F+ +Y ++++YF+ VMVRLML L
Sbjct: 401 EHQPTTWVSFFFDLHILVCTFPAGLWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTL 460
Query: 1345 APVMCILSGIGVSQVLSTYMKNLDISR---PDKKSKKQQDSTYP---------IKNEVA- 1485
PV+C+LS I S V Y+ + D+ R P + S + D P ++ VA
Sbjct: 461 TPVVCMLSAIAFSNVFEHYLGD-DMKRENPPVEDSSDEDDKRNPGNLYDKAGKVRKHVAE 519
Query: 1486 -------------SGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDD 1626
S + ++M L+ + H TWVTS AYSSPS+VL++ DG+R I DD
Sbjct: 520 QEKTEEGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDD 579
Query: 1627 FREAYYWLRHNTPE-VKIWEEWD 1692
FREAY+WLR NT E ++ WD
Sbjct: 580 FREAYFWLRQNTDEHARVMSWWD 602
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,495,756
Number of extensions: 1120540
Number of successful extensions: 3130
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3129
Number of HSP's successfully gapped: 2
Length of query: 632
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 527
Effective length of database: 8,729,747
Effective search space: 4600576669
Effective search space used: 4600576669
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013028
(1896 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032434.3| dolichyl-diphosphooligosaccharide--protein glyc... 1026 0.0
Alignment gi|NP_077184.2| dolichyl-diphosphooligosaccharide--protein glyc... 585 e-167
>ref|NP_032434.3| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3A [Mus musculus].
Length = 705
Score = 1026 bits (2654), Expect = 0.0
Identities = 511/527 (96%), Positives = 513/527 (97%), Gaps = 1/527 (0%)
Frame = +1
Query: 115 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 294
MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL
Sbjct: 1 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 60
Query: 295 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 474
AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA
Sbjct: 61 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 120
Query: 475 PLFSSFTTIVTYHLTKELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 654
PLFSSFTTIVTYHLTKELKD MIAVVPGYISRSVAGSYDNEGIAIFCMLLTY
Sbjct: 121 PLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 180
Query: 655 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 834
YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY
Sbjct: 181 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 240
Query: 835 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 1014
CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR
Sbjct: 241 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 300
Query: 1015 SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 1194
SVISLVGFVLLT+GALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY
Sbjct: 301 SVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 360
Query: 1195 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 1374
YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI
Sbjct: 361 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 420
Query: 1375 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 1554
GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS
Sbjct: 421 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 480
Query: 1555 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE K+ WD
Sbjct: 481 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWD 527
>ref|NP_077184.2| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3B [Mus musculus].
Length = 823
Score = 585 bits (1509), Expect = e-167
Identities = 290/538 (53%), Positives = 376/538 (69%), Gaps = 27/538 (5%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 67 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 126
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 127 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 186
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 187 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 246
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 247 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 306
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 307 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 366
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 367 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 426
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 427 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 485
Query: 1420 SRP--------------------DKKSKKQQDSTYPIKNE------VASGMILVMAFFLI 1521
R DK K ++ T K E + S + ++M L+
Sbjct: 486 KRENPPVEDSSDEDDKRNPGNLYDKAGKVRKHVTEQEKPEEGLGPNIKSIVTMLMLMLLM 545
Query: 1522 TYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
+ H TWVTS AYSSPS+VL++ DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 546 MFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 603
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,902,072
Number of extensions: 1534125
Number of successful extensions: 4286
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4281
Number of HSP's successfully gapped: 2
Length of query: 632
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 524
Effective length of database: 12,373,671
Effective search space: 6483803604
Effective search space used: 6483803604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013028
(1896 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689926.1| dolichyl-diphosphooligosaccharide--protein glyc... 1021 0.0
Alignment gi|NP_849193.1| dolichyl-diphosphooligosaccharide--protein glyc... 587 e-167
>ref|NP_689926.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3A [Homo sapiens].
Length = 705
Score = 1021 bits (2641), Expect = 0.0
Identities = 509/527 (96%), Positives = 511/527 (96%), Gaps = 1/527 (0%)
Frame = +1
Query: 115 MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 294
MTK GFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL
Sbjct: 1 MTKFGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFL 60
Query: 295 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 474
AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA
Sbjct: 61 AEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLA 120
Query: 475 PLFSSFTTIVTYHLTKELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 654
PLFSSFTTIVTYHLTKELKD MIAVVPGYISRSVAGSYDNEGIAIFCMLLTY
Sbjct: 121 PLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTY 180
Query: 655 YMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 834
YMWIKAVKTGSI WAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY
Sbjct: 181 YMWIKAVKTGSICWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAY 240
Query: 835 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 1014
CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR
Sbjct: 241 CTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFR 300
Query: 1015 SVISLVGFVLLTIGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 1194
SVISLVGFVLLT+GALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY
Sbjct: 301 SVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSY 360
Query: 1195 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 1374
YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI
Sbjct: 361 YFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGI 420
Query: 1375 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 1554
GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS
Sbjct: 421 GVSQVLSTYMKNLDISRPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTS 480
Query: 1555 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE K+ WD
Sbjct: 481 EAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWD 527
>ref|NP_849193.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3B [Homo sapiens].
Length = 826
Score = 587 bits (1514), Expect = e-167
Identities = 290/538 (53%), Positives = 377/538 (70%), Gaps = 27/538 (5%)
Frame = +1
Query: 160 TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 339
+LL IL +A + FS+RLFAV+RFES+IHEFDP+FNYR+T LA GFY+F NWFD+R
Sbjct: 70 SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
Query: 340 AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 519
AWYPLGRI+GGT+YPGLMIT+ I+ +L+ +IT+ IR+VCVFLAP FS T+I T+ LT
Sbjct: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
Query: 520 KELKDXXXXXXXXXMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWA 699
+EL + IA+VPGYISRSVAGS+DNEGIAIF + TYY+W+K+VKTGS++W
Sbjct: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
Query: 700 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 879
C L+YFYMVS+WGGYVF+INLIPLHV VL+L R+S R+Y+AY T Y +G ILSMQI
Sbjct: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
Query: 880 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTIGA 1059
FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L Q+F+ LF +SL +
Sbjct: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVI 369
Query: 1060 LLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGL 1239
L TG I+PW+GRFYSL D YAK +IPIIASVSEHQPTTW S++FDL +LV FP GL
Sbjct: 370 YLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGL 429
Query: 1240 YYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDI 1419
++C N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I S V Y+ + D+
Sbjct: 430 WFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-DM 488
Query: 1420 SRP--------------------DKKSKKQQDSTYPIKNE------VASGMILVMAFFLI 1521
R DK K ++ +T K E + S + ++M L+
Sbjct: 489 KRENPPVEDSSDEDDKRNQGNLYDKAGKVRKHATEQEKTEEGLGPNIKSIVTMLMLMLLM 548
Query: 1522 TYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPE-VKIWEEWD 1692
+ H TWVTS AYSSPS+VL++ DG+R I DDFREAY+WLR NT E ++ WD
Sbjct: 549 MFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWD 606
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 71,227,729
Number of extensions: 1789020
Number of successful extensions: 4966
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4963
Number of HSP's successfully gapped: 2
Length of query: 632
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 523
Effective length of database: 14,704,088
Effective search space: 7690238024
Effective search space used: 7690238024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013028
(1896 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 688 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 688 bits (347), Expect = 0.0
Identities = 399/412 (96%), Gaps = 4/412 (0%)
Strand = Plus / Plus
Query: 1480 gtggcaagtggcatgatactggtcatggctttctttctcatcacctacacctttcattca 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58396899 gtggcaagtggcatgatactggtcatggctttctttctcatcacctacacctttcattca 58396958
Query: 1540 acttgggtgaccagtgaggcctattcttctccctccattgtgctgtctgctcgtggtggg 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58396959 acttgggtgaccagtgaggcctattcttctccctccattgtgctgtctgctcgtggtggg 58397018
Query: 1600 gatggcagtaggatcatttttgatgacttccgagaagcgtactattggcttcgtcacaat 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58397019 gatggcagtaggatcatttttgatgacttccgagaagcgtactattggcttcgtcacaat 58397078
Query: 1660 actccagaggtgaagatttgggaggagtgggattgtggggtaggaggagttgggggcaca 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58397079 actccagaggtgaagatttgggaggagtgggattgtggggtaggaggagttgggggcaca 58397138
Query: 1720 tttgatgttgtggtgaataaaatagcttttaaatgggcagagagcttagagaaattggaa 1779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 58397139 tttgatgttgtggtgaataaaatagcttttaaatgggcagagagcttagagaaattgg-a 58397197
Query: 1780 actat-aaattctgggtgtgaanntagac-tagacgtncatttccagtcatttcaggatt 1837
||||| ||||||| ||||| | |||| ||||||| |||||||||||||||||||||
Sbjct: 58397198 actataaaattct-ggtgttgaataagacttagacgtcaatttccagtcatttcaggatt 58397256
Query: 1838 tcttttgtagtgacccttactgggtattatctacactctgcctggcacttaa 1889
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 58397257 tcttttgtagtgacccttactggtaattatctacactctgcctggcacttaa 58397308
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 892 cagcctgtgctttcatcagaacacatggcagcctttggagtctttggtctatgccagatc 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58392704 cagcctgtgctttcatcagaacacatggcagcctttggagtctttggtctatgccagatc 58392763
Query: 952 catgcctttgtggattatctacgcagcaagttgaatccacagcaatttgaagttcttttc 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58392764 catgcctttgtggattatctacgcagcaagttgaatccacagcaatttgaagttcttttc 58392823
Query: 1012 cgaagtgtcatctccctggtaggctttgtccttctcaccataggagctctcctcatgctg 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58392824 cgaagtgtcatctccctggtaggctttgtccttctcaccataggagctctcctcatgctg 58392883
Query: 1072 acagg 1076
|||||
Sbjct: 58392884 acagg 58392888
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 729 ggtctcttcatggggaggttatgtgttcttgatcaacttgatccctcttcatgtgctggt 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58391124 ggtctcttcatggggaggttatgtgttcttgatcaacttgatccctcttcatgtgctggt 58391183
Query: 789 gctgatgctcacaggacgtttctctcaccggatctatgtggcctactgtactgtttactg 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58391184 gctgatgctcacaggacgtttctctcaccggatctatgtggcctactgtactgtttactg 58391243
Query: 849 cctgggcacaattctttccatgcagatctcctttgtgggtttccag 894
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58391244 cctgggcacaattctttccatgcagatctcctttgtgggtttccag 58391289
Score = 317 bits (160), Expect = 1e-83
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 1068 gctgacaggaaaaatatctccctggacggggcgtttctactcactactggatccttcgta 1127
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58393947 gctgccaggaaaaatatctccctggacggggcgtttctactcactactggatccttcgta 58394006
Query: 1128 tgctaagaacaacatccccattattgcttctgtgtctgagcatcagcctacgacctggtc 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58394007 tgctaagaacaacatccccattattgcttctgtgtctgagcatcagcctacgacctggtc 58394066
Query: 1188 ctcatactattttgatttacagcttctcgtcttcatgtttccag 1231
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58394067 ctcatactattttgatttacagcttctcgtcttcatgtttccag 58394110
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1323 ggtgcgtctgatgctagtgttggcgcctgttatgtgcattctttctggcattggagtctc 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58395931 ggtgcgtctgatgctagtgttggcgcctgttatgtgcattctttctggcattggagtctc 58395990
Query: 1383 ccaggttctgtccacttacatgaagaatttggacataagtcgaccagataagaagagcaa 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58395991 ccaggttctgtccacttacatgaagaatttggacataagtcgaccagataagaagagcaa 58396050
Query: 1443 gaaacaacaggattctacctaccccattaagaatgaagtg 1482
||||||||||||||||||||||||||||||||||||||||
Sbjct: 58396051 gaaacaacaggattctacctaccccattaagaatgaagtg 58396090
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 383 caggcttaatgatcacctctgctgcaatctaccatgtcctccattttttccacatcacca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58387877 caggcttaatgatcacctctgctgcaatctaccatgtcctccattttttccacatcacca 58387936
Query: 443 tcgacattcggaatgtctgtgtgttcctggcccctctcttctcttccttcactaccatcg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58387937 tcgacattcggaatgtctgtgtgttcctggcccctctcttctcttccttcactaccatcg 58387996
Query: 503 tcacgtaccaccttaccaaagagctcaagg 532
||||||||||||||||||||||||||||||
Sbjct: 58387997 tcacgtaccaccttaccaaagagctcaagg 58388026
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 74 agctgtttgaatgttatctgttgccacctattgatgtcaagatgactaagctgggatttt 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58382944 agctgtttgaatgttatctgttgccacctattgatgtcaagatgactaagctgggatttt 58383003
Query: 134 tacggttgtcctatgagaagcaggacacacttctgaagcttctaattctgtcaatggctg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58383004 tacggttgtcctatgagaagcaggacacacttctgaagcttctaattctgtcaatggctg 58383063
Query: 194 ctgtattat 202
|||||||||
Sbjct: 58383064 ctgtattat 58383072
Score = 236 bits (119), Expect = 4e-59
Identities = 122/123 (99%)
Strand = Plus / Plus
Query: 264 gtactttaattatcggactacccggttcttggctgaggagggattttataaattccataa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58387377 gtactttaattatcggactacccggttcttggctgaggagggattttataaattccataa 58387436
Query: 324 ctggtttgatgaccgggcctggtacccattgggacgaattattggaggaacaatttaccc 383
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 58387437 ctggtttgatgaccgggcctggtaccctttgggacgaattattggaggaacaatttaccc 58387496
Query: 384 agg 386
|||
Sbjct: 58387497 agg 58387499
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 621 agggattgccatcttttgcatgctactcacctactacatgtggatcaaagcagtaaagac 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58390353 agggattgccatcttttgcatgctactcacctactacatgtggatcaaagcagtaaagac 58390412
Query: 681 tggttccatctattgggcagccaagtgtgcccttgcttatttctacatggt 731
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58390413 tggttccatctattgggcagccaagtgtgcccttgcttatttctacatggt 58390463
Score = 192 bits (97), Expect = 5e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1230 agttggtctctattactgctttagcaacctgtctgatgcccggattttcatcatcatgta 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58395092 agttggtctctattactgctttagcaacctgtctgatgcccggattttcatcatcatgta 58395151
Query: 1290 tggtgtgaccagcatgtacttttcagctgttatggtg 1326
|||||||||||||||||||||||||||||||||||||
Sbjct: 58395152 tggtgtgaccagcatgtacttttcagctgttatggtg 58395188
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 530 aggatgcaggagctggtcttcttgctgctgccatgattgctgtagttcctggatatatct 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58389188 aggatgcaggagctggtcttcttgctgctgccatgattgctgtagttcctggatatatct 58389247
Query: 590 ctcgatctgtggctggctcctatgataatgaagg 623
||||||||||||||||||||||||||||||||||
Sbjct: 58389248 ctcgatctgtggctggctcctatgataatgaagg 58389281
Score = 149 bits (75), Expect = 7e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 ggtgctaccaaggttgggtgcgcggtgaacggatggcagagcgagccgaacggactcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58380090 ggtgctaccaaggttgggtgcgcggtgaacggatggcagagcgagccgaacggactcctg 58380149
Query: 61 aggagcgcgggacag 75
|||||||||||||||
Sbjct: 58380150 aggagcgcgggacag 58380164
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 203 cattctccactcgtctctttgctgtcctgagatttgaaagtgtcatccatgaatttgatc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58384207 cattctccactcgtctctttgctgtcctgagatttgaaagtgtcatccatgaatttgatc 58384266
Query: 263 cgta 266
||||
Sbjct: 58384267 cgta 58384270
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,112,866
Number of extensions: 338
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 14
Length of query: 1896
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1874
Effective length of database: 2,808,408,574
Effective search space: 5262957667676
Effective search space used: 5262957667676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)