Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013029
(1003 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545414.2| PREDICTED: similar to Thymus-specific serine pr... 360 e-100
Alignment gi|XP_848703.1| PREDICTED: similar to Dipeptidyl-peptidase II p... 96 4e-20
Alignment gi|XP_533994.2| PREDICTED: similar to Lysosomal Pro-X carboxype... 84 3e-16
>ref|XP_545414.2| PREDICTED: similar to Thymus-specific serine protease precursor
[Canis familiaris].
Length = 521
Score = 360 bits (925), Expect = e-100
Identities = 196/320 (61%), Positives = 215/320 (67%), Gaps = 9/320 (2%)
Frame = +2
Query: 71 MAARPVPWLGSLFLVSLWGASAPASLLRRLSEHIQLFQEXXXXXXXXXXXXXXXXPPKEG 250
MA R LG L L+SL +S P SLLRRL EH+ Q+ PK+G
Sbjct: 1 MAHRSALRLGPLLLLSLCASSTPVSLLRRLGEHLGQIQDSSSPSLSLGPGAVAF--PKQG 58
Query: 251 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 430
WLEQPLDPFNASD +SFLQRYWVNDQ+WTSQ GPVFLHLGGE SL GSV+RGHP ALAP
Sbjct: 59 WLEQPLDPFNASDTRSFLQRYWVNDQHWTSQRGPVFLHLGGESSLRSGSVLRGHPTALAP 118
Query: 431 VWGALVIGLEHRFYGLSIPAEGLGMAKLRFLSSRHALADVVSARLALTRLFNVSSSSPWI 610
WGALVIGLEHRFYGLS+PA GL +A+LRFLSSRHALADV SARLAL RLFNVSSSSPWI
Sbjct: 119 AWGALVIGLEHRFYGLSVPAGGLDVAQLRFLSSRHALADVASARLALARLFNVSSSSPWI 178
Query: 611 CFGGSYAGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSEYNDV-VSKSLMNTAIGGS-- 781
CFGGSYAGSLAAWARLKFPHLIF LDFSEYN+V S ++ +GG
Sbjct: 179 CFGGSYAGSLAAWARLKFPHLIFASVASSAPVRATLDFSEYNEVRGSGRQVHAVLGGGLR 238
Query: 782 ------PECRAAVSSAFXXXXXXXXXXXXXXXXXXXXXXXCGSLRRAADREELLGTLQAL 943
P+CRAA S+AF C L RA D+ ELLG LQAL
Sbjct: 239 PRGVSLPQCRAAASAAFAEVERRLHAGGATRSALRAELGACSPLDRAEDQAELLGALQAL 298
Query: 944 VGGAVQYNGQVGAPLSVRQL 1003
VGGAVQY+ Q G PLSVR L
Sbjct: 299 VGGAVQYDAQAGVPLSVRGL 318
>ref|XP_848703.1| PREDICTED: similar to Dipeptidyl-peptidase II precursor (DPP II)
(Dipeptidyl aminopeptidase II) (Quiescent cell proline
dipeptidase) (Dipeptidyl peptidase 7) isoform 1 [Canis
familiaris].
Length = 497
Score = 96.3 bits (238), Expect = 4e-20
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Frame = +2
Query: 245 EGWLEQPLDPFNAS--DRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPA 418
EG+ EQ LD FN ++F QR+ V++++W GP+F + G EG++ + G
Sbjct: 38 EGYFEQLLDHFNFERFGNKTFQQRFLVSEKFWKRGKGPIFFYTGNEGNVWSFANNSGFIL 97
Query: 419 ALAPVWGALVIGLEHRFYGLSIP--AEGLGMAKLRFLSSRHALADVVSARLALTRLFNVS 592
LA ALVI EHR+YG S+P + L+ ALAD LAL R +
Sbjct: 98 ELAAQQEALVIFAEHRYYGKSLPFGEQSTRRGYTELLTVEQALADFARLLLALRRDLG-A 156
Query: 593 SSSPWICFGGSYAGSLAAWARLKFPHLI 676
SP I FGGSY G L+A+ R+K+PHL+
Sbjct: 157 QDSPAIAFGGSYGGMLSAYMRIKYPHLV 184
>ref|XP_533994.2| PREDICTED: similar to Lysosomal Pro-X carboxypeptidase precurso
Animal-Genome cDNA 20110601C-013029
Animal-Genome cDNA 20110601C-013029
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013029
(1003 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069798.2| thymus-specific serine protease [Bos taurus]. 435 e-122
Alignment gi|NP_001098513.1| dipeptidyl peptidase 7 [Bos taurus]. 96 4e-20
Alignment gi|NP_001033253.1| lysosomal Pro-X carboxypeptidase precursor [... 86 5e-17
>ref|NP_001069798.2| thymus-specific serine protease [Bos taurus].
Length = 516
Score = 435 bits (1119), Expect = e-122
Identities = 223/307 (72%), Positives = 235/307 (76%)
Frame = +2
Query: 83 PVPWLGSLFLVSLWGASAPASLLRRLSEHIQLFQEXXXXXXXXXXXXXXXXPPKEGWLEQ 262
PVPWLG L LVSLW +SAPASLLRRL EHI FQE PKEGWLEQ
Sbjct: 5 PVPWLGPLLLVSLWASSAPASLLRRLGEHILRFQESSALGLGLGPDSVTL--PKEGWLEQ 62
Query: 263 PLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAPVWGA 442
PLDPFNASDR+SFLQRYWVNDQ+WTSQDGPVFLHLGGEGSLGPGSVMRGHPA LAP+WGA
Sbjct: 63 PLDPFNASDRRSFLQRYWVNDQHWTSQDGPVFLHLGGEGSLGPGSVMRGHPANLAPIWGA 122
Query: 443 LVIGLEHRFYGLSIPAEGLGMAKLRFLSSRHALADVVSARLALTRLFNVSSSSPWICFGG 622
LVI LEHRFYGLSIPAEGL MA+LRFLSSRHALAD SARL L+RLFNVSS+SPWICFGG
Sbjct: 123 LVISLEHRFYGLSIPAEGLDMAQLRFLSSRHALADAASARLTLSRLFNVSSTSPWICFGG 182
Query: 623 SYAGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSEYNDVVSKSLMNTAIGGSPECRAAV 802
SYAGSLAAWARLKFPHL F LDFS+YNDVVS+SLMNTAIGGS ECRAA
Sbjct: 183 SYAGSLAAWARLKFPHLFFASIASSAPVRAILDFSKYNDVVSRSLMNTAIGGSLECRAAA 242
Query: 803 SSAFXXXXXXXXXXXXXXXXXXXXXXXCGSLRRAADREELLGTLQALVGGAVQYNGQVGA 982
S+AF CGSL RA D+ ELLG LQALVGGAVQY+GQ GA
Sbjct: 243 SAAFAEVERRLRASRGAWATLSVELGACGSLERAEDQAELLGALQALVGGAVQYDGQAGA 302
Query: 983 PLSVRQL 1003
PLSVRQL
Sbjct: 303 PLSVRQL 309
>ref|NP_001098513.1| dipeptidyl peptidase 7 [Bos taurus].
Length = 488
Score = 96.3 bits (238), Expect = 4e-20
Identities = 65/199 (32%), Positives = 94/199 (47%), Gaps = 8/199 (4%)
Frame = +2
Query: 242 KEGWLEQPLDPFNAS--DRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHP 415
+E + EQ LD FN ++FLQR+ + +++W +GP+F + G EG + + G
Sbjct: 37 QEAYFEQLLDHFNFERFGNKTFLQRFLMTEKFWNRGEGPIFFYTGNEGDVWSFANNSGFI 96
Query: 416 AALAPVWGALVIGLEHRFYGLSIP--AEGLGMAKLRFLSSRHALADVVSARLALTRLFNV 589
LA GALV+ EHR+YG S+P L+ ALAD AL +
Sbjct: 97 LELAEQQGALVVFAEHRYYGKSLPFGERSTWRGYTELLTVEQALADFAGLLRALRQELE- 155
Query: 590 SSSSPWICFGGSYAGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSE----YNDVVSKSL 757
+ +P I FGGSY G L+A+ R+K+PHL+ + + DV +
Sbjct: 156 APDAPAIAFGGSYGGMLSAYLRIKYPHLVAGALAASAPVVSAAGLGDPYQFFQDVSADFQ 215
Query: 758 MNTAIGGSPECRAAVSSAF 814
G SPEC AV AF
Sbjct: 216 -----GQSPECARAVQDAF 229
>ref|NP_001033253.1|r
(Prolylcarboxypeptidase) (PRCP) (Proline
carboxypeptidase) (Angiotensinase C) (Lysosomal
carboxypeptidase C) [Canis familiaris].
Length = 497
Score = 83.6 bits (205), Expect = 3e-16
Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Frame = +2
Query: 251 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 430
++ Q +D F + ++F QRY + D++W G + + G EG + G +A
Sbjct: 52 YILQKVDHFGFAVDKTFKQRYLIADEHWKKDGGSILFYTGNEGDIIWFCNNTGFMWDVAE 111
Query: 431 VWGALVIGLEHRFYGLSIPAEGLGMAK---LRFLSSRHALADVVSARLALTRLFNVSSSS 601
A+++ EHR+YG S+P L +L+S ALAD L R + +
Sbjct: 112 EMKAMLVFAEHRYYGESLPFGNNSFKDSRHLNYLTSEQALADFAMLIKHLKRTIPGAKNQ 171
Query: 602 PWICFGGSYAGSLAAWARLKFPHLI 676
P I GGSY G LAAW R+K+PH++
Sbjct: 172 PVIAIGGSYGGMLAAWFRMKYPHMV 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,527,813
Number of extensions: 1205467
Number of successful extensions: 7104
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6987
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
lysosomal Pro-X carboxypeptidase precursor [Bos taurus].
Length = 499
Score = 85.9 bits (211), Expect = 5e-17
Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Frame = +2
Query: 251 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 430
+++Q +D F + ++F QRY + D YW G + + G EG + G +A
Sbjct: 54 YIQQKVDHFGFNIDRTFKQRYLIADNYWKEDGGSILFYTGNEGDIIWFCNNTGFMWDIAE 113
Query: 431 VWGALVIGLEHRFYGLSIP--AEGLGMAK-LRFLSSRHALADVVSARLALTRLFNVSSSS 601
A+++ EHR+YG S+P A+ ++ L FL++ ALAD L R + +
Sbjct: 114 EMKAMLVFAEHRYYGESLPFGADSFSDSRHLNFLTTEQALADFAKLIRYLKRTIPGARNQ 173
Query: 602 PWICFGGSYAGSLAAWARLKFPHLI 676
I GGSY G LAAW R+K+PHL+
Sbjct: 174 HVIALGGSYGGMLAAWFRMKYPHLV 198
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,917,429
Number of extensions: 1170270
Number of successful extensions: 6739
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6666
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013029
(1003 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356607.1| PREDICTED: thymus-specific serine protease [... 506 e-143
Alignment gi|XP_003129755.2| PREDICTED: lysosomal Pro-X carboxypeptidase-... 84 2e-16
>ref|XP_003356607.1| PREDICTED: thymus-specific serine protease [Sus scrofa].
Length = 514
Score = 506 bits (1302), Expect = e-143
Identities = 259/311 (83%), Positives = 260/311 (83%)
Frame = +2
Query: 71 MAARPVPWLGSLFLVSLWGASAPASLLRRLSEHIQLFQEXXXXXXXXXXXXXXXXPPKEG 250
MAARPVPWLGSLFLVSLWGASAPASLLRRLSEHIQLFQE PPKEG
Sbjct: 1 MAARPVPWLGSLFLVSLWGASAPASLLRRLSEHIQLFQESAGLGPSLSLGSGAVAPPKEG 60
Query: 251 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 430
WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP
Sbjct: 61 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 120
Query: 431 VWGALVIGLEHRFYGLSIPAEGLGMAKLRFLSSRHALADVVSARLALTRLFNVSSSSPWI 610
VWGALVIGLEHRFYGLSIPAEGLGMAKLRFLSSRHALADVVSARLALTRLFNVSSSSPWI
Sbjct: 121 VWGALVIGLEHRFYGLSIPAEGLGMAKLRFLSSRHALADVVSARLALTRLFNVSSSSPWI 180
Query: 611 CFGGSYAGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSEYNDVVSKSLMNTAIGGSPEC 790
CFGGSYAGSLAAWARLKFPHLIF LDFSEYNDVVSKSLMNTAIGGSPEC
Sbjct: 181 CFGGSYAGSLAAWARLKFPHLIFASVASSAPVRAVLDFSEYNDVVSKSLMNTAIGGSPEC 240
Query: 791 RAAVSSAFXXXXXXXXXXXXXXXXXXXXXXXCGSLRRAADREELLGTLQALVGGAVQYNG 970
RAAVSSAF CGSLRRAADREELLGTLQALVGGAVQY+G
Sbjct: 241 RAAVSSAFAEVERRLRAGGAALAALQAELGACGSLRRAADREELLGTLQALVGGAVQYDG 300
Query: 971 QVGAPLSVRQL 1003
QVGAPLSVRQL
Sbjct: 301 QVGAPLSVRQL 311
>ref|XP_003129755.2| PREDICTED: lysosomal Pro-X carboxypeptidase-like [Sus scrofa].
Length = 480
Score = 83.6 bits (205), Expect = 2e-16
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Frame = +2
Query: 245 EGWLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAAL 424
+GW+ D F + ++F QRY + D +W G + + G EG + G +
Sbjct: 37 DGWV----DHFGFNTDKTFKQRYLIADTHWRKDGGSILFYTGNEGDIIWFCNNTGFMWDV 92
Query: 425 APVWGALVIGLEHRFYGLSIPAEGLGMAK---LRFLSSRHALADVVSARLALTRLFNVSS 595
A A+++ EHR+YG S+P L FL+S ALAD L R +
Sbjct: 93 AEELKAMLVFAEHRYYGESLPFGAHSFKDSRHLNFLTSEQALADFAELIRHLKRKIPGTE 152
Query: 596 SSPWICFGGSYAGSLAAWARLKFPHLI 676
+ P I GGSY G LAAW R+K+PH++
Sbjct: 153 NQPVIALGGSYGGMLAAWFRMKYPHMV 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,815,447
Number of extensions: 758722
Number of successful extensions: 4740
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4685
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013029
(1003 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062302.1| thymus-specific serine protease precursor [Mus ... 388 e-108
Alignment gi|NP_114031.2| dipeptidyl peptidase 2 precursor [Mus musculus]. 93 3e-19
Alignment gi|NP_082519.1| lysosomal Pro-X carboxypeptidase precursor [Mus... 89 5e-18
>ref|NP_062302.1| thymus-specific serine protease precursor [Mus musculus].
Length = 509
Score = 388 bits (996), Expect = e-108
Identities = 200/305 (65%), Positives = 216/305 (70%)
Frame = +2
Query: 89 PWLGSLFLVSLWGASAPASLLRRLSEHIQLFQEXXXXXXXXXXXXXXXXPPKEGWLEQPL 268
PWLG L LVSLWG S PA LLRRL EHIQ FQE PK+GWLEQPL
Sbjct: 6 PWLGFLLLVSLWGLSTPALLLRRLREHIQKFQESSSLHPGFGLGHGPGAVPKQGWLEQPL 65
Query: 269 DPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAPVWGALV 448
DPFNASDR++FLQRYWVNDQ+ T QD PVFLH+GGEGSLGPGSVM GHPAALAP WGALV
Sbjct: 66 DPFNASDRRTFLQRYWVNDQHRTGQDVPVFLHIGGEGSLGPGSVMAGHPAALAPAWGALV 125
Query: 449 IGLEHRFYGLSIPAEGLGMAKLRFLSSRHALADVVSARLALTRLFNVSSSSPWICFGGSY 628
I LEHRFYGLS+PA GL +A LR+LSSRHALADV SAR AL+ L NVSSSSPWICFGGSY
Sbjct: 126 ISLEHRFYGLSMPAGGLDLALLRYLSSRHALADVASARQALSGLLNVSSSSPWICFGGSY 185
Query: 629 AGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSEYNDVVSKSLMNTAIGGSPECRAAVSS 808
AGSLA WARLKFPHL+F +DFS YN VV++SL AIGGS EC AA S+
Sbjct: 186 AGSLATWARLKFPHLVFAAVASSAPLSAVVDFSAYNQVVARSLTQVAIGGSLECLAAAST 245
Query: 809 AFXXXXXXXXXXXXXXXXXXXXXXXCGSLRRAADREELLGTLQALVGGAVQYNGQVGAPL 988
AF CGSL D+ ELLG LQALVGG VQY+GQ GAPL
Sbjct: 246 AFTEVERLLRAGPAAQAVLREELGACGSLDLTEDQAELLGALQALVGGTVQYDGQAGAPL 305
Query: 989 SVRQL 1003
SVRQL
Sbjct: 306 SVRQL 310
>ref|NP_114031.2| dipeptidyl peptidase 2 precursor [Mus musculus].
Length = 506
Score = 93.2 bits (230), Expect = 3e-19
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 8/198 (4%)
Frame = +2
Query: 245 EGWLEQPLDPFNASD--RQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPA 418
E + EQ +D FN ++F QR+ V+D++W +GP+F + G EG + + G
Sbjct: 43 ENYFEQYMDHFNFESFGNKTFGQRFLVSDKFWKMGEGPIFFYTGNEGDIWSFANNSGFMV 102
Query: 419 ALAPVWGALVIGLEHRFYGLSIP--AEGLGMAKLRFLSSRHALADVVSARLALTRLFNVS 592
LA AL++ EHR+YG S+P + + L+ ALAD AL + V
Sbjct: 103 ELAAQQEALLVFAEHRYYGKSLPFGVQSTQRGYTQLLTVEQALADFAVLLQALRQDLGV- 161
Query: 593 SSSPWICFGGSYAGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSE----YNDVVSKSLM 760
+P I FGGSY G L+A+ R+K+PHL+ + + DV +
Sbjct: 162 HDAPTIAFGGSYGGMLSAYMRMKYPHLVAGALAASAPVVAVAGLGDSYQFFRDVTA---- 217
Query: 761 NTAIGGSPECRAAVSSAF 814
G SP+C AV AF
Sbjct: 218 -DFYGQSPKCAQAVRDAF 234
>ref|NP_082519.1| lysosomal Pro-X carboxypeptidase precursor [Mus musculus].
Length = 491
Score = 89.0 bits (219), Expect = 5e-18
Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
Frame = +2
Query: 251 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 430
+ EQ +D F +D ++F QRY V D++W G + + G EG + G +A
Sbjct: 50 YFEQKVDHFGFADMRTFKQRYLVADKHWQRNGGSILFYTGNEGDIVWFCNNTGFMWDVAE 109
Query: 431 VWGALVIGLEHRFYGLSIPAEGLGMAK----LRFLSSRHALADVVSARLALTRLFNVSSS 598
A+++ EHR+YG S+P G K L FL+S ALAD L + +
Sbjct: 110 ELKAMLVFAEHRYYGESLPF-GQDSFKDSQHLNFLTSEQALADFAELIRHLEKTIPGAQG 168
Query: 599 SPWICFGGSYAGSLAAWARLKFPHLI 676
P I GGSY G LAAW R+K+PH++
Sbjct: 169 QPVIAIGGSYGGMLAAWFRMKYPHIV 194
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,118,587
Number of extensions: 959758
Number of successful extensions: 5031
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4958
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013029
(1003 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005856.1| thymus-specific serine protease precursor [Homo... 417 e-117
Alignment gi|NP_037511.2| dipeptidyl peptidase 2 preproprotein [Homo sapi... 97 2e-20
Alignment gi|NP_005031.1| lysosomal Pro-X carboxypeptidase isoform 1 prep... 87 2e-17
Alignment gi|NP_955450.2| lysosomal Pro-X carboxypeptidase isoform 2 prep... 84 2e-16
>ref|NP_005856.1| thymus-specific serine protease precursor [Homo sapiens].
Length = 514
Score = 417 bits (1072), Expect = e-117
Identities = 218/311 (70%), Positives = 229/311 (73%)
Frame = +2
Query: 71 MAARPVPWLGSLFLVSLWGASAPASLLRRLSEHIQLFQEXXXXXXXXXXXXXXXXPPKEG 250
MA WLG L LVSLWG APASLLRRL EHIQ FQE PK G
Sbjct: 1 MAVWLAQWLGPLLLVSLWGLLAPASLLRRLGEHIQQFQESSAQGLGLSLGPGAAALPKVG 60
Query: 251 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 430
WLEQ LDPFN SDR+SFLQRYWVNDQ+W QDGP+FLHLGGEGSLGPGSVMRGHPAALAP
Sbjct: 61 WLEQLLDPFNVSDRRSFLQRYWVNDQHWVGQDGPIFLHLGGEGSLGPGSVMRGHPAALAP 120
Query: 431 VWGALVIGLEHRFYGLSIPAEGLGMAKLRFLSSRHALADVVSARLALTRLFNVSSSSPWI 610
WGALVI LEHRFYGLSIPA GL MA+LRFLSSR ALADVVSARLAL+RLFN+SSSSPWI
Sbjct: 121 AWGALVISLEHRFYGLSIPAGGLEMAQLRFLSSRLALADVVSARLALSRLFNISSSSPWI 180
Query: 611 CFGGSYAGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSEYNDVVSKSLMNTAIGGSPEC 790
CFGGSYAGSLAAWARLKFPHLIF LDFSEYNDVVS+SLM+TAIGGS EC
Sbjct: 181 CFGGSYAGSLAAWARLKFPHLIFASVASSAPVRAVLDFSEYNDVVSRSLMSTAIGGSLEC 240
Query: 791 RAAVSSAFXXXXXXXXXXXXXXXXXXXXXXXCGSLRRAADREELLGTLQALVGGAVQYNG 970
RAAVS AF CG L RA ++ ELLG LQALVGG VQY+G
Sbjct: 241 RAAVSVAFAEVERRLRSGGAAQAALRTELSACGPLGRAENQAELLGALQALVGGVVQYDG 300
Query: 971 QVGAPLSVRQL 1003
Q GAPLSVRQL
Sbjct: 301 QTGAPLSVRQL 311
>ref|NP_037511.2| dipeptidyl peptidase 2 preproprotein [Homo sapiens].
Length = 492
Score = 97.4 bits (241), Expect = 2e-20
Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 4/195 (2%)
Frame = +2
Query: 242 KEGWLEQPLDPFNAS--DRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHP 415
+E + +Q LD FN ++F QR+ V+D++W +GP+F + G EG + +
Sbjct: 32 QERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFV 91
Query: 416 AALAPVWGALVIGLEHRFYGLSIP--AEGLGMAKLRFLSSRHALADVVSARLALTRLFNV 589
A LA GAL++ EHR+YG S+P A+ L+ ALAD AL R
Sbjct: 92 AELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLG- 150
Query: 590 SSSSPWICFGGSYAGSLAAWARLKFPHLIFXXXXXXXXXXXXLDFSEYNDVVSKSLMNTA 769
+ +P I FGGSY G L+A+ R+K+PHL+ + N + +
Sbjct: 151 AQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFF-RDVTADF 209
Query: 770 IGGSPECRAAVSSAF 814
G SP+C V AF
Sbjct: 210 EGQSPKCTQGVREAF 224
>ref|NP_005031.1| lysosomal Pro-X carboxypeptidase isoform 1 preproprotein [Homo
sapiens].
Length = 496
Score = 87.4 bits (215), Expect = 2e-17
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Frame = +2
Query: 251 WLEQPLDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAP 430
+ +Q +D F + ++F QRY V D+YW G + + G EG + G +A
Sbjct: 52 YFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDVAE 111
Query: 431 VWGALVIGLEHRFYGLSIPAEGLGMAK---LRFLSSRHALADVVSARLALTRLFNVSSSS 601
A+++ EHR+YG S+P L FL+S ALAD L R + +
Sbjct: 112 ELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQ 171
Query: 602 PWICFGGSYAGSLAAWARLKFPHLI 676
P I GGSY G LAAW R+K+PH++
Sbjct: 172 PVIAIGGSYGGMLAAWFRMKYPHMV 196
>ref|NP_955450.2| lysosomal Pro-X carboxypeptidase isoform 2 preproprotein [Homo
sapiens].
Length = 517
Score = 84.3 bits (207), Expect = 2e-16
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Frame = +2
Query: 266 LDPFNASDRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPGSVMRGHPAALAPVWGAL 445
+D F + ++F QRY V D+YW G + + G EG + G +A A+
Sbjct: 78 VDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAM 137
Query: 446 VIGLEHRFYGLSIPAEGLGMAK---LRFLSSRHALADVVSARLALTRLFNVSSSSPWICF 616
++ EHR+YG S+P L FL+S ALAD L R + + P I
Sbjct: 138 LVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAI 197
Query: 617 GGSYAGSLAAWARLKFPHLI 676
GGSY G LAAW R+K+PH++
Sbjct: 198 GGSYGGMLAAWFRMKYPHMV 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,647,286
Number of extensions: 1165056
Number of successful extensions: 6370
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6304
Number of HSP's successfully gapped: 4
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013029
(1003 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 426 e-116
>Sscrofa_Chr07
|| Length = 134764511
Score = 426 bits (215), Expect = e-116
Identities = 221/223 (99%)
Strand = Plus / Minus
Query: 781 cccggagtgccgcgccgctgtgtcctcagccttcgcggaggtggagcggcggctgcgcgc 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22746105 cccgcagtgccgcgccgctgtgtcctcagccttcgcggaggtggagcggcggctgcgcgc 22746046
Query: 841 gggcggggctgctctggcagcgctgcaggcggagctgggcgcctgtgggtccctgaggcg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22746045 gggcggggctgctctggcagcgctgcaggcggagctgggcgcctgtgggtccctgaggcg 22745986
Query: 901 cgctgcggaccgggaggagctgctggggacgttgcaggcactcgtgggaggcgcggtgca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22745985 cgctgcggaccgggaggagctgctggggacgttgcaggcactcgtgggaggcgcggtgca 22745926
Query: 961 gtacaacgggcaagtgggagcgccgctgagcgtgcgacagctc 1003
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 22745925 gtacgacgggcaagtgggagcgccgctgagcgtgcgacagctc 22745883
Score = 295 bits (149), Expect = 2e-77
Identities = 163/170 (95%)
Strand = Plus / Minus
Query: 138 cagcttccctccttaggcgcctcagtgagcacattcagttgtttcaggagagcgctggct 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22750176 cagcttccctccttaggcgcctcagtgagcacattcagttgtttcaggagagcgctggct 22750117
Query: 198 tgggcccgagcctgagcctgggctcaggtgctgtggnnnnnnngaaagaggggtggctgg 257
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22750116 tgggcccgagcctgagcctgggctcaggtgctgtggcccccccgaaagaggggtggctgg 22750057
Query: 258 agcagccactggaccccttcaatgcatctgacagacagtcttttctgcag 307
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22750056 agcagccactggaccccttcaatgcatctgacagacagtcttttctgcag 22750007
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 406 agggcaccccgcagcactggccccagtctggggagccctggtgataggcctggaacatag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22748661 agggcaccccgcagcactggccccagtctggggagccctggtgataggcctggaacatag 22748602
Query: 466 attttatggcctgagtatacctgctgaagggctgggcatggccaagctccgcttcctgtc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22748601 attttatggcctgagtatacctgctgaagggctgggcatggccaagctccgcttcctgtc 22748542
Query: 526 cagtcgccatgcg 538
|||||||||||||
Sbjct: 22748541 cagtcgccatgcg 22748529
Score = 254 bits (128), Expect = 8e-65
Identities = 134/136 (98%)
Strand = Plus / Minus
Query: 5 aaatgaagtcctcagtgagtgggaagaacatcacccctaaagaagctgcacagaggactg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22750384 aaatgaagtcctcagtgagtgggaagaacatcacccctaaagaagctgcacagaggactg 22750325
Query: 65 gatgacatggctgccaggcctgtcccatggctgggctctctcttcctggtttccctctgg 124
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 22750324 gacgacatggctgccaggcctgtaccatggctgggctctctcttcctggtttccctctgg 22750265
Query: 125 ggggcctcggctccag 140
||||||||||||||||
Sbjct: 22750264 ggggcctcggctccag 22750249
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 538 gctggccgatgtggtctctgcccgccttgcactcacccgcctcttcaacgtctcctcctc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22747153 gctggccgatgtggtctctgcccgccttgcactcacccgcctcttcaacgtctcctcctc 22747094
Query: 598 cagtccctggatctgcttcggaggctcctatgctggctccctggctgcctgggccaggct 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22747093 cagtccctggatctgcttcggaggctcctatgctggctccctggctgcctgggccaggct 22747034
Query: 658 gaag 661
||||
Sbjct: 22747033 gaag 22747030
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 306 agcggtattgggtaaatgaccaatattggaccagccaggatggacctgtattcctgcatc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22748902 agcggtattgggtaaatgaccaatattggaccagccaggatggacctgtattcctgcatc 22748843
Query: 366 tagggggcgaaggcagccttggacctggctcagtaatgagagg 408
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22748842 tagggggcgaaggcagccttggacctggctcagtaatgagagg 22748800
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 660 agtttccccatctcattttcgcctccgtcgcctcttccgctcccgtgcgggctgtactgg 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22746766 agtttccccatctcattttcgcctccgtcgcctcttccgctcccgtgcgggctgtactgg 22746707
Query: 720 atttctccgagtataatgatgt 741
||||||||||||||||||||||
Sbjct: 22746706 atttctccgagtataatgatgt 22746685
Score = 95.6 bits (48), Expect = 4e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 740 gtggtgtccaaaagcctaatgaacactgcgattggaggatccccggag 787
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22746591 gtggtgtccaaaagcctaatgaacactgcgattggaggatccccggag 22746544
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,772,918
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 8
Length of query: 1003
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 982
Effective length of database: 2,808,413,156
Effective search space: 2757861719192
Effective search space used: 2757861719192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)