Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013030
(523 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107195.1| cytochrome b-c1 complex subunit 9 [Bos tauru... 128 3e-30
>ref|NP_001107195.1| cytochrome b-c1 complex subunit 9 [Bos taurus].
Length = 64
Score = 128 bits (321), Expect = 3e-30
Identities = 61/64 (95%), Positives = 62/64 (96%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
M APTLTARLYSLLFRRTSTFALTI VGALFFERAFDQGADAIYEHIN+GKLWKHIKHKY
Sbjct: 1 MVAPTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKY 60
Query: 207 ENKE 218
ENKE
Sbjct: 61 ENKE 64
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 16,151,042
Number of extensions: 471749
Number of successful extensions: 1492
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1490
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 17,681,374
Length adjustment: 95
Effective length of query: 79
Effective length of database: 14,538,014
Effective search space: 1148503106
Effective search space used: 1148503106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Animal-Genome cDNA 20110601C-013030
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013030
(523 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852402.1| PREDICTED: similar to ubiquinol-cytochrome c re... 130 5e-31
Alignment gi|XP_543473.2| PREDICTED: similar to ubiquinol-cytochrome c re... 99 2e-21
>ref|XP_852402.1| PREDICTED: similar to ubiquinol-cytochrome c reductase complex
7.2kDa protein isoform a isoform 2 [Canis familiaris].
Length = 64
Score = 130 bits (328), Expect = 5e-31
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
MAAPT TARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY
Sbjct: 1 MAAPTFTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 60
Query: 207 ENKE 218
ENKE
Sbjct: 61 ENKE 64
>ref|XP_543473.2| PREDICTED: similar to ubiquinol-cytochrome c reductase complex
7.2kDa protein isoform b isoform 1 [Canis familiaris].
Length = 62
Score = 99.0 bits (245), Expect = 2e-21
Identities = 49/50 (98%), Positives = 49/50 (98%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQG 176
MAAPT TARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQG
Sbjct: 1 MAAPTFTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQG 50
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 16,426,471
Number of extensions: 407761
Number of successful extensions: 1448
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 18,874,504
Length adjustment: 96
Effective length of query: 78
Effective length of database: 15,674,248
Effective search space: 1222591344
Effective search space used: 1222591344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013030
(523 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133003.1| PREDICTED: cytochrome b-c1 complex subunit 9... 132 1e-31
Alignment gi|NP_001123450.1| cytochrome b-c1 complex subunit 9 [Sus scrof... 132 1e-31
>ref|XP_003133003.1| PREDICTED: cytochrome b-c1 complex subunit 9-like [Sus scrofa].
Length = 64
Score = 132 bits (332), Expect = 1e-31
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY
Sbjct: 1 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 60
Query: 207 ENKE 218
ENKE
Sbjct: 61 ENKE 64
>ref|NP_001123450.1| cytochrome b-c1 complex subunit 9 [Sus scrofa].
Length = 64
Score = 132 bits (332), Expect = 1e-31
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY
Sbjct: 1 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 60
Query: 207 ENKE 218
ENKE
Sbjct: 61 ENKE 64
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 11,152,942
Number of extensions: 422333
Number of successful extensions: 956
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 11,343,932
Length adjustment: 92
Effective length of query: 82
Effective length of database: 9,053,408
Effective search space: 742379456
Effective search space used: 742379456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013030
(523 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932096.1| cytochrome b-c1 complex subunit 9 [Mus musculus]. 124 3e-29
Alignment gi|XP_891680.1| PREDICTED: cytochrome b-c1 complex subunit 9-li... 115 2e-26
Alignment gi|XP_003086158.1| PREDICTED: cytochrome b-c1 complex subunit 9... 115 2e-26
>ref|NP_932096.1| cytochrome b-c1 complex subunit 9 [Mus musculus].
Length = 64
Score = 124 bits (312), Expect = 3e-29
Identities = 58/64 (90%), Positives = 63/64 (98%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
M++PT+ +RLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHIN+GKLWKHIKHKY
Sbjct: 1 MSSPTIPSRLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINEGKLWKHIKHKY 60
Query: 207 ENKE 218
ENKE
Sbjct: 61 ENKE 64
>ref|XP_891680.1| PREDICTED: cytochrome b-c1 complex subunit 9-like [Mus musculus].
Length = 64
Score = 115 bits (288), Expect = 2e-26
Identities = 55/64 (85%), Positives = 59/64 (92%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
M+ PT+ +RLYSLLFRRTSTFALTIAVGALFFERA DQGADAIYEHIN+GKLWKHIK Y
Sbjct: 1 MSLPTIPSRLYSLLFRRTSTFALTIAVGALFFERALDQGADAIYEHINEGKLWKHIKFLY 60
Query: 207 ENKE 218
ENKE
Sbjct: 61 ENKE 64
>ref|XP_003086158.1| PREDICTED: cytochrome b-c1 complex subunit 9-like [Mus musculus].
Length = 64
Score = 115 bits (288), Expect = 2e-26
Identities = 55/64 (85%), Positives = 59/64 (92%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
M+ PT+ +RLYSLLFRRTSTFALTIAVGALFFERA DQGADAIYEHIN+GKLWKHIK Y
Sbjct: 1 MSLPTIPSRLYSLLFRRTSTFALTIAVGALFFERALDQGADAIYEHINEGKLWKHIKFLY 60
Query: 207 ENKE 218
ENKE
Sbjct: 61 ENKE 64
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 13,581,774
Number of extensions: 325679
Number of successful extensions: 1117
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 3
Length of query: 174
Length of database: 15,617,559
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,794,175
Effective search space: 1023534000
Effective search space used: 1023534000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013030
(523 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037519.2| cytochrome b-c1 complex subunit 9 isoform a [Ho... 118 3e-27
Alignment gi|NP_001003684.1| cytochrome b-c1 complex subunit 9 isoform b ... 89 3e-18
>ref|NP_037519.2| cytochrome b-c1 complex subunit 9 isoform a [Homo sapiens].
Length = 63
Score = 118 bits (296), Expect = 3e-27
Identities = 55/63 (87%), Positives = 60/63 (95%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGKLWKHIKHKY 206
MAA TLT++LYSLLFRRTSTFALTI VG +FFERAFDQGADAIY+HIN+GKLWKHIKHKY
Sbjct: 1 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGKLWKHIKHKY 60
Query: 207 ENK 215
ENK
Sbjct: 61 ENK 63
>ref|NP_001003684.1| cytochrome b-c1 complex subunit 9 isoform b [Homo sapiens].
Length = 62
Score = 88.6 bits (218), Expect = 3e-18
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = +3
Query: 27 MAAPTLTARLYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQG 176
MAA TLT++LYSLLFRRTSTFALTI VG +FFERAFDQGADAIY+HIN+G
Sbjct: 1 MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEG 50
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 16,063,150
Number of extensions: 389439
Number of successful extensions: 1420
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 18,297,164
Length adjustment: 95
Effective length of query: 79
Effective length of database: 15,165,584
Effective search space: 1198081136
Effective search space used: 1198081136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013030
(523 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 515 e-144
gb|JH118887.1| Sus scrofa unplaced genomic scaffold ChrUScaf3150 339 9e-91
>Sscrofa_Chr14
|| Length = 153851969
Score = 515 bits (260), Expect = e-144
Identities = 260/260 (100%)
Strand = Plus / Plus
Query: 176 gaagctgtggaaacacatcaagcacaagtatgagaacaaggagtagttccttggaggccc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49820135 gaagctgtggaaacacatcaagcacaagtatgagaacaaggagtagttccttggaggccc 49820194
Query: 236 ccatcccagccggaaggatcaggtctacccatcagctctttgcctggagccagggccttg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49820195 ccatcccagccggaaggatcaggtctacccatcagctctttgcctggagccagggccttg 49820254
Query: 296 gcttgaagatgatgctcacgtcactctccatggaccacctttagctgttggcaggaaatg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49820255 gcttgaagatgatgctcacgtcactctccatggaccacctttagctgttggcaggaaatg 49820314
Query: 356 gcttcacctgacagactctttaacttctgctatgtttgaagtttgattagaatcatcaca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49820315 gcttcacctgacagactctttaacttctgctatgtttgaagtttgattagaatcatcaca 49820374
Query: 416 aataaatgtaaattgtccct 435
||||||||||||||||||||
Sbjct: 49820375 aataaatgtaaattgtccct 49820394
Score = 339 bits (171), Expect = 9e-91
Identities = 174/175 (99%)
Strand = Plus / Plus
Query: 2 ggtgctagttctgcagcggacaaacatggctgccccgacgttgactgcgaggttgtactc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49817593 ggtgctagttctgcagcggacaaacatggctgccccgacgttgactgcgaggttgtactc 49817652
Query: 62 cctgctgtttcgcaggacctctaccttcgccctcacgatcgccgtgggcgctctattctt 121
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49817653 cctgttgtttcgcaggacctctaccttcgccctcacgatcgccgtgggcgctctattctt 49817712
Query: 122 cgagcgcgccttcgatcaaggcgcggacgcgatctacgaacacatcaaccagggg 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49817713 cgagcgcgccttcgatcaaggcgcggacgcgatctacgaacacatcaaccagggg 49817767
>gb|JH118887.1| Sus scrofa unplaced genomic scaffold ChrUScaf3150
Length = 151476
Score = 339 bits (171), Expect = 9e-91
Identities = 174/175 (99%)
Strand = Plus / Plus
Query: 2 ggtgctagttctgcagcggacaaacatggctgccccgacgttgactgcgaggttgtactc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86661 ggtgctagttctgcagcggacaaacatggctgccccgacgttgactgcgaggttgtactc 86720
Query: 62 cctgctgtttcgcaggacctctaccttcgccctcacgatcgccgtgggcgctctattctt 121
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86721 cctgttgtttcgcaggacctctaccttcgccctcacgatcgccgtgggcgctctattctt 86780
Query: 122 cgagcgcgccttcgatcaaggcgcggacgcgatctacgaacacatcaaccagggg 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86781 cgagcgcgccttcgatcaaggcgcggacgcgatctacgaacacatcaaccagggg 86835
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 10,670,987
Number of extensions: 381
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 3
Length of query: 523
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 502
Effective length of database: 2,808,413,156
Effective search space: 1409823404312
Effective search space used: 1409823404312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)