Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013033
(1025 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537485.1| PREDICTED: similar to Eukaryotic translation in... 494 e-140
>ref|XP_537485.1| PREDICTED: similar to Eukaryotic translation initiation factor 2
subunit 1 (Eukaryotic translation initiation factor 2
alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A)
[Canis familiaris].
Length = 315
Score = 494 bits (1271), Expect = e-140
Identities = 252/276 (91%), Positives = 254/276 (92%)
Frame = +2
Query: 137 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMXXXXXXXXXXXXXXN 316
MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM N
Sbjct: 1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60
Query: 317 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 496
KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
Sbjct: 61 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120
Query: 497 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 676
YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
Sbjct: 121 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 180
Query: 677 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 856
NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT
Sbjct: 181 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 240
Query: 857 PLERTESLSVLNQAMAVIKEKIEERGAFFMVKWSPK 964
LERTE LSVLNQAMAVIKEKIEE+ F V+ PK
Sbjct: 241 TLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPK 276
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +1
Query: 910 KRKD*GKRGVFHGQMEPKVVTDTDETETARQLERLREK 1023
K K KRGVF+ QMEPKVVTDTDETE ARQLERL +
Sbjct: 259 KEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLERE 296
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,565,896
Number of extensions: 886397
Number of successful extensions: 2554
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2550
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013033
(1025 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_787007.1| eukaryotic translation initiation factor 2 subu... 494 e-140
>ref|NP_787007.1| eukaryotic translation initiation factor 2 subunit 1 [Bos taurus].
Length = 315
Score = 494 bits (1271), Expect = e-140
Identities = 252/276 (91%), Positives = 254/276 (92%)
Frame = +2
Query: 137 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMXXXXXXXXXXXXXXN 316
MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM N
Sbjct: 1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60
Query: 317 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 496
KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
Sbjct: 61 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120
Query: 497 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 676
YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
Sbjct: 121 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 180
Query: 677 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 856
NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT
Sbjct: 181 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 240
Query: 857 PLERTESLSVLNQAMAVIKEKIEERGAFFMVKWSPK 964
LERTE LSVLNQAMAVIKEKIEE+ F V+ PK
Sbjct: 241 TLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPK 276
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +1
Query: 910 KRKD*GKRGVFHGQMEPKVVTDTDETETARQLERLREK 1023
K K KRGVF+ QMEPKVVTDTDETE ARQLERL +
Sbjct: 259 KEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLERE 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,922,371
Number of extensions: 853297
Number of successful extensions: 2169
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2169
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013033
(1025 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928385.1| PREDICTED: eukaryotic translation initiation... 494 e-140
Alignment gi|XP_001928374.1| PREDICTED: eukaryotic translation initiation... 494 e-140
>ref|XP_001928385.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 1
isoform 2 [Sus scrofa].
Length = 315
Score = 494 bits (1271), Expect = e-140
Identities = 252/276 (91%), Positives = 254/276 (92%)
Frame = +2
Query: 137 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMXXXXXXXXXXXXXXN 316
MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM N
Sbjct: 1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60
Query: 317 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 496
KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
Sbjct: 61 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120
Query: 497 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 676
YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
Sbjct: 121 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 180
Query: 677 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 856
NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT
Sbjct: 181 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 240
Query: 857 PLERTESLSVLNQAMAVIKEKIEERGAFFMVKWSPK 964
LERTE LSVLNQAMAVIKEKIEE+ F V+ PK
Sbjct: 241 TLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPK 276
Score = 54.3 bits (129), Expect = 1e-07
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +1
Query: 910 KRKD*GKRGVFHGQMEPKVVTDTDETETARQLERLREK 1023
K K KRGVF+ QMEPKVVTDTDETE ARQLERL +
Sbjct: 259 KEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLERE 296
>ref|XP_001928374.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 1
isoform 1 [Sus scrofa].
Length = 315
Score = 494 bits (1271), Expect = e-140
Identities = 252/276 (91%), Positives = 254/276 (92%)
Frame = +2
Query: 137 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMXXXXXXXXXXXXXXN 316
MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM N
Sbjct: 1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60
Query: 317 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 496
KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
Sbjct: 61 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120
Query: 497 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 676
YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
Sbjct: 121 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 180
Query: 677 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 856
NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT
Sbjct: 181 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 240
Query: 857 PLERTESLSVLNQAMAVIKEKIEERGAFFMVKWSPK 964
LERTE LSVLNQAMAVIKEKIEE+ F V+ PK
Sbjct: 241 TLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPK 276
Score = 54.3 bits (129), Expect = 1e-07
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +1
Query: 910 KRKD*GKRGVFHGQMEPKVVTDTDETETARQLERLREK 1023
K K KRGVF+ QMEPKVVTDTDETE ARQLERL +
Sbjct: 259 KEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLERE 296
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,043,160
Number of extensions: 542341
Number of successful extensions: 1438
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 4
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013033
(1025 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080390.1| eukaryotic translation initiation factor 2 subu... 494 e-140
>ref|NP_080390.1| eukaryotic translation initiation factor 2 subunit 1 [Mus
musculus].
Length = 315
Score = 494 bits (1271), Expect = e-140
Identities = 252/276 (91%), Positives = 254/276 (92%)
Frame = +2
Query: 137 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMXXXXXXXXXXXXXXN 316
MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM N
Sbjct: 1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60
Query: 317 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 496
KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
Sbjct: 61 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120
Query: 497 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 676
YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
Sbjct: 121 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 180
Query: 677 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 856
NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT
Sbjct: 181 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 240
Query: 857 PLERTESLSVLNQAMAVIKEKIEERGAFFMVKWSPK 964
LERTE LSVLNQAMAVIKEKIEE+ F V+ PK
Sbjct: 241 TLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPK 276
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +1
Query: 910 KRKD*GKRGVFHGQMEPKVVTDTDETETARQLERLREK 1023
K K KRGVF+ QMEPKVVTDTDETE ARQLERL +
Sbjct: 259 KEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLERE 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,514,954
Number of extensions: 747291
Number of successful extensions: 1945
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1944
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013033
(1025 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004085.1| eukaryotic translation initiation factor 2 subu... 490 e-138
>ref|NP_004085.1| eukaryotic translation initiation factor 2 subunit 1 [Homo
sapiens].
Length = 315
Score = 490 bits (1261), Expect = e-138
Identities = 250/276 (90%), Positives = 253/276 (91%)
Frame = +2
Query: 137 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMXXXXXXXXXXXXXXN 316
MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM N
Sbjct: 1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60
Query: 317 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 496
KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE
Sbjct: 61 KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120
Query: 497 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 676
YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI
Sbjct: 121 YTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNI 180
Query: 677 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTT 856
NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTE MPIKINLIAPPRYVMTTT
Sbjct: 181 NRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTT 240
Query: 857 PLERTESLSVLNQAMAVIKEKIEERGAFFMVKWSPK 964
LERTE LSVL+QAMAVIKEKIEE+ F V+ PK
Sbjct: 241 TLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPK 276
Score = 53.5 bits (127), Expect = 3e-07
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = +1
Query: 910 KRKD*GKRGVFHGQMEPKVVTDTDETETARQLERLREK 1023
K K KRGVF+ QMEPKVVTDTDETE ARQ+ERL +
Sbjct: 259 KEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERE 296
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,935,964
Number of extensions: 877946
Number of successful extensions: 2395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2395
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013033
(1025 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 488 e-135
>Sscrofa_Chr07
|| Length = 134764511
Score = 488 bits (246), Expect = e-135
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 133 cagaatgccgggtctgagttgtagattttatcagcacaaatttcctgaggtggaggatgt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97399689 cagaatgccgggtctgagttgtagattttatcagcacaaatttcctgaggtggaggatgt 97399748
Query: 193 agtgatggtgaatgtgaggtccattgctgaaatgggagcttatgtcagcttgctggaata 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97399749 agtgatggtgaatgtgaggtccattgctgaaatgggagcttatgtcagcttgctggaata 97399808
Query: 253 caacaacatcgaaggcatgattcttcttagtgagctctccagaaggcgtatccgttctat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97399809 caacaacatcgaaggcatgattcttcttagtgagctctccagaaggcgtatccgttctat 97399868
Query: 313 aaacaaactcatccgaattggcaggaatgaatgtgtggttgtcattagagtggacaaaga 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97399869 aaacaaactcatccgaattggcaggaatgaatgtgtggttgtcattagagtggacaaaga 97399928
Query: 373 aaaagg 378
||||||
Sbjct: 97399929 aaaagg 97399934
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 458 gtttacagcattcttcgtcatgttgctgaggtgttggaatacaccaaggatgagcagctg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97407828 gtttacagcattcttcgtcatgttgctgaggtgttggaatacaccaaggatgagcagctg 97407887
Query: 518 gaaagcctgttccagagaactgcctgggtctttgatgacaagtacaagagaccaggatat 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97407888 gaaagcctgttccagagaactgcctgggtctttgatgacaagtacaagagaccaggatat 97407947
Query: 578 ggtgcctatgatgcatttaagcatgcagtctc 609
||||||||||||||||||||||||||||||||
Sbjct: 97407948 ggtgcctatgatgcatttaagcatgcagtctc 97407979
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1 tccgcatgcgcggtagggttgagagaagcgcacgctgaagagagtcggcggctgctgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97394899 tccgcatgcgcggtagggttgagagaagcgcacgctgaagagagtcggcggctgctgcgg 97394958
Query: 61 gtggatcaagtcagttctctctgattgaagagcgcggcgcggggccccagtgcgggatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97394959 gtggatcaagtcagttctctctgattgaagagcgcggcgcggggccccagtgcgggatcc 97395018
Query: 121 atatacatacctcag 135
|||||||||||||||
Sbjct: 97395019 atatacatacctcag 97395033
Score = 234 bits (118), Expect = 8e-59
Identities = 140/146 (95%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 813 agattaatctaatagctcctcctcggtatgtaatgactacaacccccctggagagaacag 872
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 97414812 agattaatctaatagctcctcctcggtatgtaatgactacaaccaccctggagagaacag 97414871
Query: 873 aaagtctctctgtccttaatcaagctatggctgttataaaagaaaagattgagg-aaaga 931
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 97414872 aaggtctctctgtccttaatcaagctatggctgttataaaagaaaagattgaggaaaaga 97414931
Query: 932 ggggcgtttttcatggtcaaatggag 957
|||||||||| ||| ||||||||||
Sbjct: 97414932 ggggcgttttcaatgttcaaatggag 97414957
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 610 agacccatctattttggatagcttagacttgaatgaagatgaacgggaagtactcattaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97412257 agacccatctattttggatagcttagacttgaatgaagatgaacgggaagtactcattaa 97412316
Query: 670 caatattaataggcgtttgaccccacaggctgtcaaaattcgagcag 716
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97412317 caatattaataggcgtttgaccccacaggctgtcaaaattcgagcag 97412363
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 715 agatattgaagtggcttgttatggttatgaaggcattgatgccgtgaaagaagccttgag 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97414022 agatattgaagtggcttgttatggttatgaaggcattgatgccgtgaaagaagccttgag 97414081
Query: 775 agcaggtttgaattgttctacagaaaccatgcccatcaag 814
||||||||||||||||||||||||||||||||||||||||
Sbjct: 97414082 agcaggtttgaattgttctacagaaaccatgcccatcaag 97414121
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 376 aggatatattgatttatcaaaaagaagagtttctccagaggaagcaatcaaatgtgaaga 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97405427 aggatatattgatttatcaaaaagaagagtttctccagaggaagcaatcaaatgtgaaga 97405486
Query: 436 taaattcacaaaatccaaaactgt 459
||||||||||||||||||||||||
Sbjct: 97405487 taaattcacaaaatccaaaactgt 97405510
Score = 105 bits (53), Expect = 5e-20
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 956 agcccaaagtggttacagatacagatgagaccgaaactgcaaggcagctggagaggc-tg 1014
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 97416624 agcccaaagtggttacagatacagatgagaccgaacttgcaaggcagctggagaggcttg 97416683
Query: 1015 agagagaaa 1023
|||||||||
Sbjct: 97416684 agagagaaa 97416692
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,070,749
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 8
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)