Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013045
(1265 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095749.2| retinol saturase [Bos taurus]. 587 e-168
Alignment gi|XP_002691413.1| PREDICTED: retinol saturase (all-trans-retin... 587 e-168
Alignment gi|XP_001790415.1| PREDICTED: retinol saturase [Bos taurus]. 587 e-168
>ref|NP_001095749.2| retinol saturase [Bos taurus].
Length = 609
Score = 587 bits (1514), Expect = e-168
Identities = 295/390 (75%), Positives = 324/390 (83%)
Frame = +3
Query: 96 MWXXXXXXXXXXXXXXGQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSV 275
MW G+VYK LF+GSSPNPF EDV+RPPAPLVTDKEARKKVLKQ FSV
Sbjct: 1 MWVSLLLLAALLLVVLGKVYKGLFSGSSPNPFLEDVQRPPAPLVTDKEARKKVLKQAFSV 60
Query: 276 NRVPEKLDVVVXXXXXXXXXXXXXXXXXXXRVLVLEQHTKAGGCCHTFGKDGLEFDTGIH 455
+RVP+KLDVVV RVLVLEQHTKAGGCCHTFGK+GLEFDTGIH
Sbjct: 61 SRVPKKLDVVVIGSGFGGLAAAAILAKTGKRVLVLEQHTKAGGCCHTFGKNGLEFDTGIH 120
Query: 456 YIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLK 635
YIGRM+EGSF RFILDQITEGQLDWA LSSPFDIMVL+GP+GRKEFPMYTG KAY+QGLK
Sbjct: 121 YIGRMQEGSFDRFILDQITEGQLDWAALSSPFDIMVLEGPDGRKEFPMYTGMKAYIQGLK 180
Query: 636 EKFPQEEAAIDKYIKLVKMVSSRASHXXXXXXXXXXXXQFLSKYGLLTRFSPFLRASTQS 815
+KFPQEEAAIDKY+KLVK+VS + Q L+KYGLLT FSPFLRASTQS
Sbjct: 181 DKFPQEEAAIDKYMKLVKVVSRGGIYAVLLKILPLPVAQLLTKYGLLTYFSPFLRASTQS 240
Query: 816 LAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAF 995
LA+VLQQLPASPEL+AVLSYIFPTYGVTPSH+TF+MHALLVD++L GAFYP+GG+SEIAF
Sbjct: 241 LAEVLQQLPASPELQAVLSYIFPTYGVTPSHTTFSMHALLVDYFLGGAFYPRGGSSEIAF 300
Query: 996 HTIPVIQRAGGAVLARAPVQSILLDSAGKACGVPVKNGQELVNIFCPVVISDAGLFNTYE 1175
HTIPVIQRAGGAVL RAPV SILLDSAGKACGV VK G++LVNI+CP+VISDAGLFNTYE
Sbjct: 301 HTIPVIQRAGGAVLTRAPVHSILLDSAGKACGVTVKKGEDLVNIYCPIVISDAGLFNTYE 360
Query: 1176 HLLPEKARSLPGVXRQLGAVRPGLSIFSVF 1265
HLLPE+AR LPGV RQLG VRPGLS+F VF
Sbjct: 361 HLLPEQARCLPGVKRQLGMVRPGLSMFCVF 390
>ref|XP_002691413.1| PREDICTED: retinol saturase (all-trans-retinol 13,14-reductase) [Bos
taurus].
Length = 609
Score = 587 bits (1514), Expect = e-168
Identities = 295/390 (75%), Positives = 324/390 (83%)
Frame = +3
Query: 96 MWXXXXXXXXXXXXXXGQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSV 275
MW G+VYK LF+GSSPNPF EDV+RPPAPLVTDKEARKKVLKQ FSV
Sbjct: 1 MWVSLLLLAALLLVVLGKVYKGLFSGSSPNPFLEDVQRPPAPLVTDKEARKKVLKQAFSV 60
Query: 276 NRVPEKLDVVVXXXXXXXXXXXXXXXXXXXRVLVLEQHTKAGGCCHTFGKDGLEFDTGIH 455
+RVP+KLDVVV RVLVLEQHTKAGGCCHTFGK+GLEFDTGIH
Sbjct: 61 SRVPKKLDVVVIGSGFGGLAAAAILAKTGKRVLVLEQHTKAGGCCHTFGKNGLEFDTGIH 120
Query: 456 YIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLK 635
YIGRM+EGSF RFILDQITEGQLDWA LSSPFDIMVL+GP+GRKEFPMYTG KAY+QGLK
Sbjct: 121 YIGRMQEGSFDRFILDQITEGQLDWAALSSPFDIMVLEGPDGRKEFPMYTGMKAYIQGLK 180
Query: 636 EKF
Animal-Genome cDNA 20110601C-013045
Animal-Genome cDNA 20110601C-013045
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013045
(1265 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540198.1| PREDICTED: similar to all-trans-13,14-dihydrore... 541 e-154
>ref|XP_540198.1| PREDICTED: similar to all-trans-13,14-dihydroretinol saturase [Canis
familiaris].
Length = 608
Score = 541 bits (1393), Expect = e-154
Identities = 272/368 (73%), Positives = 298/368 (80%)
Frame = +3
Query: 162 LFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSVNRVPEKLDVVVXXXXXXXXXXX 341
L AG +PNPFSEDV+RPPAPLVTDK ARKKVLK+ FS +RVPEKLD VV
Sbjct: 22 LSAGRAPNPFSEDVRRPPAPLVTDKGARKKVLKRAFSASRVPEKLDAVVIGSGFGGLAAA 81
Query: 342 XXXXXXXXRVLVLEQHTKAGGCCHTFGKDGLEFDTGIHYIGRMEEGSFGRFILDQITEGQ 521
RVLVLEQHTKAGGCCHTF +GLEFDTGIHY+G M+EGS GRF LDQITEGQ
Sbjct: 82 AILAKAGKRVLVLEQHTKAGGCCHTFRHNGLEFDTGIHYVGSMQEGSIGRFALDQITEGQ 141
Query: 522 LDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLKEKFPQEEAAIDKYIKLVKMVSS 701
LDWA LSSPFDIMVL+ PNGRKEFPMY+GKKAY+QGLKEKFPQEEAAIDKY+KLVK+VS
Sbjct: 142 LDWAALSSPFDIMVLERPNGRKEFPMYSGKKAYIQGLKEKFPQEEAAIDKYVKLVKVVSC 201
Query: 702 RASHXXXXXXXXXXXXQFLSKYGLLTRFSPFLRASTQSLAKVLQQLPASPELRAVLSYIF 881
H Q L K GLLTRFSPFLRASTQSLA+VLQQLPAS EL+AVLSYIF
Sbjct: 202 GVIHAILLKMLPLRIAQLLGKCGLLTRFSPFLRASTQSLAEVLQQLPASLELQAVLSYIF 261
Query: 882 PTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAFHTIPVIQRAGGAVLARAPVQSI 1061
PTYGVTPSHS F+MHAL+VDHY++GAFYP+GG SEIAFHTIPVIQRAGG VL A V+SI
Sbjct: 262 PTYGVTPSHSAFSMHALVVDHYIEGAFYPRGGASEIAFHTIPVIQRAGGEVLTGATVRSI 321
Query: 1062 LLDSAGKACGVPVKNGQELVNIFCPVVISDAGLFNTYEHLLPEKARSLPGVXRQLGAVRP 1241
LLDSAGKACGV VK QELVNI+CP+VIS AGLFNTY +LLPE AR LPGV +QL VRP
Sbjct: 322 LLDSAGKACGVTVKKNQELVNIYCPIVISSAGLFNTYNYLLPENARCLPGVKQQLEMVRP 381
Query: 1242 GLSIFSVF 1265
G+ FS+F
Sbjct: 382 GVGAFSIF 389
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,693,976
Number of extensions: 1804666
Number of successful extensions: 6482
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6460
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
PQEEAAIDKYIKLVKMVSSRASHXXXXXXXXXXXXQFLSKYGLLTRFSPFLRASTQS 815
+KFPQEEAAIDKY+KLVK+VS + Q L+KYGLLT FSPFLRASTQS
Sbjct: 181 DKFPQEEAAIDKYMKLVKVVSRGGIYAVLLKILPLPVAQLLTKYGLLTYFSPFLRASTQS 240
Query: 816 LAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAF 995
LA+VLQQLPASPEL+AVLSYIFPTYGVTPSH+TF+MHALLVD++L GAFYP+GG+SEIAF
Sbjct: 241 LAEVLQQLPASPELQAVLSYIFPTYGVTPSHTTFSMHALLVDYFLGGAFYPRGGSSEIAF 300
Query: 996 HTIPVIQRAGGAVLARAPVQSILLDSAGKACGVPVKNGQELVNIFCPVVISDAGLFNTYE 1175
HTIPVIQRAGGAVL RAPV SILLDSAGKACGV VK G++LVNI+CP+VISDAGLFNTYE
Sbjct: 301 HTIPVIQRAGGAVLTRAPVHSILLDSAGKACGVTVKKGEDLVNIYCPIVISDAGLFNTYE 360
Query: 1176 HLLPEKARSLPGVXRQLGAVRPGLSIFSVF 1265
HLLPE+AR LPGV RQLG VRPGLS+F VF
Sbjct: 361 HLLPEQARCLPGVKRQLGMVRPGLSMFCVF 390
>ref|XP_001790415.1| PREDICTED: retinol saturase [Bos taurus].
Length = 609
Score = 587 bits (1514), Expect = e-168
Identities = 295/390 (75%), Positives = 324/390 (83%)
Frame = +3
Query: 96 MWXXXXXXXXXXXXXXGQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSV 275
MW G+VYK LF+GSSPNPF EDV+RPPAPLVTDKEARKKVLKQ FSV
Sbjct: 1 MWVSLLLLAALLLVVLGKVYKGLFSGSSPNPFLEDVQRPPAPLVTDKEARKKVLKQAFSV 60
Query: 276 NRVPEKLDVVVXXXXXXXXXXXXXXXXXXXRVLVLEQHTKAGGCCHTFGKDGLEFDTGIH 455
+RVP+KLDVVV RVLVLEQHTKAGGCCHTFGK+GLEFDTGIH
Sbjct: 61 SRVPKKLDVVVIGSGFGGLAAAAILAKTGKRVLVLEQHTKAGGCCHTFGKNGLEFDTGIH 120
Query: 456 YIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLK 635
YIGRM+EGSF RFILDQITEGQLDWA LSSPFDIMVL+GP+GRKEFPMYTG KAY+QGLK
Sbjct: 121 YIGRMQEGSFDRFILDQITEGQLDWAALSSPFDIMVLEGPDGRKEFPMYTGMKAYIQGLK 180
Query: 636 EKFPQEEAAIDKYIKLVKMVSSRASHXXXXXXXXXXXXQFLSKYGLLTRFSPFLRASTQS 815
+KFPQEEAAIDKY+KLVK+VS + Q L+KYGLLT FSPFLRASTQS
Sbjct: 181 DKFPQEEAAIDKYMKLVKVVSRGGIYAVLLKILPLPVAQLLTKYGLLTYFSPFLRASTQS 240
Query: 816 LAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAF 995
LA+VLQQLPASPEL+AVLSYIFPTYGVTPSH+TF+MHALLVD++L GAFYP+GG+SEIAF
Sbjct: 241 LAEVLQQLPASPELQAVLSYIFPTYGVTPSHTTFSMHALLVDYFLGGAFYPRGGSSEIAF 300
Query: 996 HTIPVIQRAGGAVLARAPVQSILLDSAGKACGVPVKNGQELVNIFCPVVISDAGLFNTYE 1175
HTIPVIQRAGGAVL RAPV SILLDSAGKACGV VK G++LVNI+CP+VISDAGLFNTYE
Sbjct: 301 HTIPVIQRAGGAVLTRAPVHSILLDSAGKACGVTVKKGEDLVNIYCPIVISDAGLFNTYE 360
Query: 1176 HLLPEKARSLPGVXRQLGAVRPGLSIFSVF 1265
HLLPE+AR LPGV RQLG VRPGLS+F VF
Sbjct: 361 HLLPEQARCLPGVKRQLGMVRPGLSMFCVF 390
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,461,690
Number of extensions: 1753414
Number of successful extensions: 6585
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6555
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013045
(1265 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124992.1| PREDICTED: all-trans-retinol 13,14-reductase... 670 0.0
>ref|XP_003124992.1| PREDICTED: all-trans-retinol 13,14-reductase [Sus scrofa].
Length = 611
Score = 670 bits (1728), Expect = 0.0
Identities = 342/390 (87%), Positives = 342/390 (87%)
Frame = +3
Query: 96 MWXXXXXXXXXXXXXXGQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSV 275
MW GQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSV
Sbjct: 1 MWLSLLLLAALLLAVLGQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSV 60
Query: 276 NRVPEKLDVVVXXXXXXXXXXXXXXXXXXXRVLVLEQHTKAGGCCHTFGKDGLEFDTGIH 455
NRVPEKLDVVV RVLVLEQHTKAGGCCHTFGKDGLEFDTGIH
Sbjct: 61 NRVPEKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGGCCHTFGKDGLEFDTGIH 120
Query: 456 YIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLK 635
YIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLK
Sbjct: 121 YIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLK 180
Query: 636 EKFPQEEAAIDKYIKLVKMVSSRASHXXXXXXXXXXXXQFLSKYGLLTRFSPFLRASTQS 815
EKFPQEEAAIDKYIKLVKMVSSRASH QFLSKYGLLTRFSPFLRASTQS
Sbjct: 181 EKFPQEEAAIDKYIKLVKMVSSRASHAILLKILPLPLAQFLSKYGLLTRFSPFLRASTQS 240
Query: 816 LAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAF 995
LAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAF
Sbjct: 241 LAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAF 300
Query: 996 HTIPVIQRAGGAVLARAPVQSILLDSAGKACGVPVKNGQELVNIFCPVVISDAGLFNTYE 1175
HTIPVIQRAGGAVL RAPVQSILLDSAGKACGV VKNGQELVNIFCPVVISDAGLFNTYE
Sbjct: 301 HTIPVIQRAGGAVLTRAPVQSILLDSAGKACGVAVKNGQELVNIFCPVVISDAGLFNTYE 360
Query: 1176 HLLPEKARSLPGVXRQLGAVRPGLSIFSVF 1265
HLLPEKARSLPGV RQLGAVRPGLSIFSVF
Sbjct: 361 HLLPEKARSLPGVQRQLGAVRPGLSIFSVF 390
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,197,665
Number of extensions: 1133622
Number of successful extensions: 4172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4155
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013045
(1265 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080435.3| all-trans-retinol 13,14-reductase precursor [Mu... 551 e-157
>ref|NP_080435.3| all-trans-retinol 13,14-reductase precursor [Mus musculus].
Length = 609
Score = 551 bits (1419), Expect = e-157
Identities = 269/373 (72%), Positives = 311/373 (83%)
Frame = +3
Query: 147 QVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSVNRVPEKLDVVVXXXXXX 326
+VY L+A SSPNPF+EDVKRPP PLVTDKEARKKVLKQ FSV+RVPEKLD VV
Sbjct: 18 RVYVGLYAASSPNPFAEDVKRPPEPLVTDKEARKKVLKQAFSVSRVPEKLDAVVIGSGIG 77
Query: 327 XXXXXXXXXXXXXRVLVLEQHTKAGGCCHTFGKDGLEFDTGIHYIGRMEEGSFGRFILDQ 506
RVLVLEQHTKAGGCCHTFG++GLEFDTGIHYIGRM EG+ GRFILDQ
Sbjct: 78 GLASAAVLAKAGKRVLVLEQHTKAGGCCHTFGENGLEFDTGIHYIGRMREGNIGRFILDQ 137
Query: 507 ITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLKEKFPQEEAAIDKYIKLV 686
ITEGQLDWA ++SPFD+M+L+GPNGRKEFPMY+G+K Y+QGLK+KFP+EEA IDKY++LV
Sbjct: 138 ITEGQLDWAPMASPFDLMILEGPNGRKEFPMYSGRKEYIQGLKKKFPKEEAVIDKYMELV 197
Query: 687 KMVSSRASHXXXXXXXXXXXXQFLSKYGLLTRFSPFLRASTQSLAKVLQQLPASPELRAV 866
K+V+ SH Q LSK+GLLTRFSPF RASTQSLA+VLQQL AS EL+AV
Sbjct: 198 KVVARGVSHAVLLKFLPLPLTQLLSKFGLLTRFSPFCRASTQSLAEVLQQLGASRELQAV 257
Query: 867 LSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAFHTIPVIQRAGGAVLARA 1046
LSYIFPTYGVTPSH+ F++HALLVDHY++GA+YP+GG+SEIAFHTIP+IQRAGGAVL RA
Sbjct: 258 LSYIFPTYGVTPSHTAFSLHALLVDHYIQGAYYPRGGSSEIAFHTIPLIQRAGGAVLTRA 317
Query: 1047 PVQSILLDSAGKACGVPVKNGQELVNIFCPVVISDAGLFNTYEHLLPEKARSLPGVXRQL 1226
VQS+LLDSAG+ACGV VK GQELVNI+CPVVIS+AG+FNTY+HLLPE R LP V +QL
Sbjct: 318 TVQSVLLDSAGRACGVSVKKGQELVNIYCPVVISNAGMFNTYQHLLPETVRHLPDVKKQL 377
Query: 1227 GAVRPGLSIFSVF 1265
VRPGLS+ S+F
Sbjct: 378 AMVRPGLSMLSIF 390
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,848,748
Number of extensions: 1460679
Number of successful extensions: 5399
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5365
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013045
(1265 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060220.3| all-trans-retinol 13,14-reductase precursor [Ho... 572 e-163
>ref|NP_060220.3| all-trans-retinol 13,14-reductase precursor [Homo sapiens].
Length = 610
Score = 572 bits (1474), Expect = e-163
Identities = 286/373 (76%), Positives = 314/373 (84%)
Frame = +3
Query: 147 QVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSVNRVPEKLDVVVXXXXXX 326
+VY LF+GSSPNPFSEDVKRPPAPLVTDKEARKKVLKQ FS N+VPEKLDVVV
Sbjct: 19 KVYLGLFSGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQAFSANQVPEKLDVVVIGSGFG 78
Query: 327 XXXXXXXXXXXXXRVLVLEQHTKAGGCCHTFGKDGLEFDTGIHYIGRMEEGSFGRFILDQ 506
RVLVLEQHTKAGGCCHTFGK+GLEFDTGIHYIGRMEEGS GRFILDQ
Sbjct: 79 GLAAAAILAKAGKRVLVLEQHTKAGGCCHTFGKNGLEFDTGIHYIGRMEEGSIGRFILDQ 138
Query: 507 ITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLKEKFPQEEAAIDKYIKLV 686
ITEGQLDWA LSSPFDIMVL+GPNGRKE+PMY+G+KAY+QGLKEKFPQEEA IDKYIKLV
Sbjct: 139 ITEGQLDWAPLSSPFDIMVLEGPNGRKEYPMYSGEKAYIQGLKEKFPQEEAIIDKYIKLV 198
Query: 687 KMVSSRASHXXXXXXXXXXXXQFLSKYGLLTRFSPFLRASTQSLAKVLQQLPASPELRAV 866
K+VSS A H Q L + GLLTRFSPFL+ASTQSLA+VLQQL AS EL+AV
Sbjct: 199 KVVSSGAPHAILLKFLPLPVVQLLDRCGLLTRFSPFLQASTQSLAEVLQQLGASSELQAV 258
Query: 867 LSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAFHTIPVIQRAGGAVLARA 1046
LSYIFPTYGVTP+HS F+MHALLV+HY+KG FYP+GG+SEIAFHTIPVIQRAGGAVL +A
Sbjct: 259 LSYIFPTYGVTPNHSAFSMHALLVNHYMKGGFYPRGGSSEIAFHTIPVIQRAGGAVLTKA 318
Query: 1047 PVQSILLDSAGKACGVPVKNGQELVNIFCPVVISDAGLFNTYEHLLPEKARSLPGVXRQL 1226
VQS+LLDSAGKACGV VK G ELVNI+CP+V+S+AGLFNTYEHLLP AR LPGV +QL
Sbjct: 319 TVQSVLLDSAGKACGVSVKKGHELVNIYCPIVVSNAGLFNTYEHLLPGNARCLPGVKQQL 378
Query: 1227 GAVRPGLSIFSVF 1265
G VRPGL + SVF
Sbjct: 379 GTVRPGLGMTSVF 391
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,591,726
Number of extensions: 1762740
Number of successful extensions: 6184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6157
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013045
(1265 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 482 e-133
>Sscrofa_Chr03
|| Length = 144787322
Score = 482 bits (243), Expect = e-133
Identities = 243/243 (100%)
Strand = Plus / Minus
Query: 447 ggaatccattatatcgggcgcatggaggagggcagctttggccgatttatcttggaccag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62319947 ggaatccattatatcgggcgcatggaggagggcagctttggccgatttatcttggaccag 62319888
Query: 507 atcaccgaggggcaactggactgggccaccttgtcttctccctttgacatcatggtcctc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62319887 atcaccgaggggcaactggactgggccaccttgtcttctccctttgacatcatggtcctc 62319828
Query: 567 gatgggcccaatggccgaaaggagtttcccatgtacactgggaagaaggcctatgttcag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62319827 gatgggcccaatggccgaaaggagtttcccatgtacactgggaagaaggcctatgttcag 62319768
Query: 627 ggcctcaaggagaaatttccccaggaagaagctgccatcgacaagtacataaagctggtt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62319767 ggcctcaaggagaaatttccccaggaagaagctgccatcgacaagtacataaagctggtt 62319708
Query: 687 aag 689
|||
Sbjct: 62319707 aag 62319705
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 688 agatggtgtccagccgcgcctctcatgccatcttgctgaagatcctcccactgcccttgg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62319057 agatggtgtccagccgcgcctctcatgccatcttgctgaagatcctcccactgcccttgg 62318998
Query: 748 ctcagttcctaagcaagtacgggctgctcactcgtttctcgccgttcctccgcgcatcca 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62318997 ctcagttcctaagcaagtacgggctgctcactcgtttctcgccgttcctccgcgcatcca 62318938
Query: 808 cccagagcctggccaaggtcctgcagcagctgccagcctccccggagctccgggctgtgc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62318937 cccagagcctggccaaggtcctgcagcagctgccagcctccccggagctccgggctgtgc 62318878
Query: 868 tcagctacattttccccacttatggtg 894
|||||||||||||||||||||||||||
Sbjct: 62318877 tcagctacattttccccacttatggtg 62318851
Score = 392 bits (198), Expect = e-106
Identities = 201/202 (99%)
Strand = Plus / Minus
Query: 891 ggtgtgacccccagccacagcacctttgccatgcacgctctcctggttgaccactacttg 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62317893 ggtgtgacccccagccacagcacctttgccatgcacgctctcctggttgaccactacttg 62317834
Query: 951 aaaggggccttttatccgaaagggggtaccagtgaaattgccttccacaccatccctgtg 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62317833 aaaggggccttttatccgaaagggggtaccagtgaaattgccttccacaccatccctgtg 62317774
Query: 1011 attcagcgggccgggggcgccgtcctggcaagggcccctgtgcagagcatcttgctggac 1070
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 62317773 attcagcgggccgggggcgccgtcctgacaagggcccctgtgcagagcatcttgctggac 62317714
Query: 1071 tcagctgggaaagcctgtggtg 1092
||||||||||||||||||||||
Sbjct: 62317713 tcagctgggaaagcctgtggtg 62317692
Score = 369 bits (186), Expect = 3e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 263 agttttctcagtcaaccgagtgccagagaagctggatgtggtggtgattggcagtggctt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62320613 agttttctcagtcaaccgagtgccagagaagctggatgtggtggtgattggcagtggctt 62320554
Query: 323 tgggggcctggctgcagctgcgatcctggccaaagccggcaagcgtgttctggtgctgga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62320553 tgggggcctggctgcagctgcgatcctggccaaagccggcaagcgtgttctggtgctgga 62320494
Query: 383 acaacataccaaggcgggaggctgttgccatacctttggaaaggatggccttgaatttga 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62320493 acaacataccaaggcgggaggctgttgccatacctttggaaaggatggccttgaatttga 62320434
Query: 443 cacggg 448
||||||
Sbjct: 62320433 cacggg 62320428
Score = 258 bits (130), Expect = 7e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 135 gccgtcctcggccaagtttacaagtggctgtttgcaggcagctctccgaaccccttctcc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62322966 gccgtcctcggccaagtttacaagtggctgtttgcaggcagctctccgaaccccttctcc 62322907
Query: 195 gaggacgttaagaggccacccgcacccctcgtgacggacaaggaagccaggaagaaggtt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62322906 gaggacgttaagaggccacccgcacccctcgtgacggacaaggaagccaggaagaaggtt 62322847
Query: 255 ctcaaacaag 264
||||||||||
Sbjct: 62322846 ctcaaacaag 62322837
Score = 218 bits (110), Expect = 6e-54
Identities = 119/122 (97%)
Strand = Plus / Minus
Query: 1089 ggtgtccccgtgaagaatgggcaagaactggtgaacatcttctgccccgttgtgatctct 1148
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62315298 ggtgtcgccgtgaagaatgggcaagaactggtgaacatcttctgccccgttgtgatctct 62315239
Query: 1149 gatgcaggactcttcaacacctatgaacacttgttgccggagaaggcccgctcgcttcca 1208
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 62315238 gatgcaggactcttcaacacctatgagcatttgttgccggagaaggcccgctcgcttcca 62315179
Query: 1209 gg 1210
||
Sbjct: 62315178 gg 62315177
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 1 gctatttccgcctactctgtggggcaacaggctaattgggcagagccgcggccgcagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62323100 gctatttccgcctactctgtggggcaacaggctaattgggcagagccgcggccgcagtcg 62323041
Query: 61 gagcagacgggttccccacacctgaagccggcgcgatgtggctgtc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62323040 gagcagacgggttccccacacctgaagccggcgcgatgtggctgtc 62322995
Score = 111 bits (56), Expect = 9e-22
Identities = 58/59 (98%)
Strand = Plus / Minus
Query: 1207 caggggtgcancggcagctgggggccgtgcggccaggcttgagcatattctctgtcttc 1265
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62311073 caggggtgcagcggcagctgggggccgtgcggccaggcttgagcatattctctgtcttc 62311015
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,113,820
Number of extensions: 241
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 8
Length of query: 1265
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1244
Effective length of database: 2,808,413,156
Effective search space: 3493665966064
Effective search space used: 3493665966064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)