Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013053
(1514 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 632 0.0
Alignment gi|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus]. 567 e-162
Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase IB s... 187 3e-47
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 184 2e-46
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 169 5e-42
Alignment gi|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa pr... 168 1e-41
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 154 2e-37
Alignment gi|NP_001073118.1| WD repeat domain-containing protein 83 [Bos ... 154 2e-37
Alignment gi|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus]. 152 6e-37
Alignment gi|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partia... 152 6e-37
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 632 bits (1629), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Frame = +2
Query: 302 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 481
VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 482 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 661
SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 662 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 842 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 1021
DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 1202 KSDC 1213
KSDC
Sbjct: 331 KSDC 334
>ref|XP_001788325.2| PREDICTED: WD repeat domain 5 [Bos taurus].
Length = 330
Score = 567 bits (1462), Expect = e-162
Identities = 268/301 (89%), Positives = 283/301 (94%)
Frame = +2
Query: 305 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 484
KPNYALKFTL GHT+AVSSVKFSPNGEWLASSSADK+I IWGAYDGK+EKT+ GH L IS
Sbjct: 28 KPNYALKFTLEGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKTLKGHNLEIS 87
Query: 485 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 664
DVAWSSDS+ LVSASDDKTLKIWDV SGKCLKTLKGHSNYVFCCNFNP SNLI+SGSFDE
Sbjct: 88 DVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDE 147
Query: 665 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 844
SV+IW+VKTGKCLKTL AHSDPVSAVHFN GSLIVS SYDG+CRIWD ASGQCLK L+D
Sbjct: 148 SVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKALVD 207
Query: 845 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 1024
DDNPPVSFVKFSPNGKYIL ATLDNTLKLWDYS+G+CLKTYTGHKNEKYC+FA+FSVTGG
Sbjct: 208 DDNPPVSFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCVFASFSVTGG 267
Query: 1025 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 1204
KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS ACHPTENIIASAAL NDKT+KLW
Sbjct: 268 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENIIASAALGNDKTVKLWT 327
Query: 1205 S 1207
S
Sbjct: 328 S 328
>ref|NP_777088.1| platelet-activating factor acetylhydrolase IB subunit alpha [Bos
taurus].
Length = 410
Score = 187 bits (474), Expect = 3e-47
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 19/313 (6%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDH 160
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--- 853
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L + ++
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280
Query: 854 -----PPVSFVKFS-----------PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 985
P S+ S G ++L+ + D T+K+WD S G CL T GH N
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 986 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 1165
+ + +GGK+I+S ++D + +W+ + K ++ L H V S H T + +
Sbjct: 341 VRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 1166 AALENDKTIKLWK 1204
++ D+T+K+W+
Sbjct: 398 GSV--DQTVKVWE 408
Score = 84.7 bits (208), Expect = 2e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 184 bits (467), Expect = 2e-46
Identities = 101/293 (34%), Positives = 161/293 (54%), Gaps = 1/293 (0%)
Frame = +2
Query: 329 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
TL GH V ++ F+ P G+ +A+ S DK K+W GK T GH I ++++
Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ 188
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
S L+ + S D T K+WD+ SG+ + TL GHS + +FN N I++GSFD +V +W+
Sbjct: 189 STLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEA 248
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
TG+ + TL H +S+ FN D SLI++ S D C++WD +G+C+ TL D+ +
Sbjct: 249 DTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILD 308
Query: 866 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 1045
F GK I A+ D T +++ + +C+ GH+ E I N G +++GS
Sbjct: 309 SC-FDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFN---PQGNRLLTGS 364
Query: 1046 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 1204
D IW+ QT + +Q L+GHTD + S A + +II + + D T ++W+
Sbjct: 365 SDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGS--KDNTCRIWR 415
Score = 176 bits (446), Expect = 5e-44
Identities = 93/291 (31%), Positives = 163/291 (56%), Gaps = 1/291 (0%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-S 508
L H +++V + +G + S D+ K+W G+ T+ GH+ + +A+++
Sbjct: 88 LRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYG 147
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ + + S DKT K+W V +GKC T +GH+ + C +FNPQS L+ +GS D + ++WD++
Sbjct: 148 DKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQ 207
Query: 689 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 868
+G+ + TL HS + ++ FN G+ I++ S+D +W+ +G+ + TLI +S
Sbjct: 208 SGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLI-GHCAEISS 266
Query: 869 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 1048
F+ + IL ++D T KLWD GKC+ T TGH +E + + F T GK I + S
Sbjct: 267 AVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDE--ILDSCFDYT-GKLIATASA 323
Query: 1049 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
D I++ T+E V KL+GH + + +P N + + + +DKT ++W
Sbjct: 324 DGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGS--SDKTARIW 372
Score = 135 bits (340), Expect = 1e-31
Identities = 67/203 (33%), Positives = 110/203 (54%)
Frame = +2
Query: 326 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
FTL GH+ + S+ F+ +G + + S D + +W A G+ T+ GH IS ++ D
Sbjct: 213 FTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWD 272
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
+L+++ S DKT K+WD +GKC+ TL GH + + F+ LI + S D + RI+
Sbjct: 273 CSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSA 332
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
T +C+ L H +S + FN G+ +++ S D RIWD +GQCL+ L + +
Sbjct: 333 ATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVL-EGHTDEIF 391
Query: 866 FVKFSPNGKYILAATLDNTLKLW 934
F+ G I+ + DNT ++W
Sbjct: 392 SCAFNYKGDIIITGSKDNTCRIW 414
Score = 106 bits (265), Expect = 5e-23
Identities = 59/169 (34%), Positives = 89/169 (52%)
Frame = +2
Query: 704 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 883
K L AH P++ V N+ GS ++ SYD C++WDTASG+ L TL N + +P
Sbjct: 86 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNP 145
Query: 884 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 1063
G I + D T KLW GKC T+ GH E C+ N T + +GS D
Sbjct: 146 YGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST---LVATGSMDTTAK 202
Query: 1064 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+W++Q+ E V L GH+ +IS + + + N I + + D T+ +W++D
Sbjct: 203 LWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSF--DHTVTVWEAD 249
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 169 bits (429), Expect = 5e-42
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 366
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 367 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 424
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 425 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 479
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 480 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 529
Query: 1079 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 530 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 569
Score = 143 bits (360), Expect = 5e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 285 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 343
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 344 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 399
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 400 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 456
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 457 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 509
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 510 KDNILVSG--NADSTVKIW 526
Score = 107 bits (267), Expect = 3e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 417 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 472
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 473 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 530
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 531 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 581
>ref|NP_001039847.1| U5 small nuclear ribonucleoprotein 40 kDa protein [Bos taurus].
Length = 358
Score = 168 bits (426), Expect = 1e-41
Identities = 99/290 (34%), Positives = 160/290 (55%), Gaps = 10/290 (3%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 508
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 122
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 679
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 123 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 180
Query: 680 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 859
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 181 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADS- 238
Query: 860 VSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTG--HKNEKYCIFANFSVTG 1021
V+ + S G Y+L+ +DNT+++WD K +C++ + G H EK + ++S G
Sbjct: 239 VTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSWSPDG 298
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 1171
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 299 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 347
Score = 109 bits (273), Expect = 6e-24
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 2/208 (0%)
Frame = +2
Query: 584 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 757
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 121
Query: 758 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 937
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 122 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 181
Query: 938 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 1117
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 182 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 237
Query: 1118 VVISTACHPTENIIASAALENDKTIKLW 1201
V + + + S A++N T+++W
Sbjct: 238 SVTGLSLSSEGSYLLSNAMDN--TVRVW 263
Score = 83.2 bits (204), Expect = 6e-16
Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Frame = +2
Query: 341 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 520
+T V +V F+ + + S D IK+W K T+ GH ++ ++ SS+ + L+
Sbjct: 193 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLL 252
Query: 521 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 676
S + D T+++WDV +C++ +G+ + C+++P + I +GS D V +
Sbjct: 253 SNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 312
Query: 677 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 787
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 313 WDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349
Score = 62.4 bits (150), Expect = 1e-09
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Frame = +2
Query: 320 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 475
L +T+ GH +V+ + S G +L S++ D +++W F+ + +
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEK 287
Query: 476 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 655
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 347
Query: 656 FDESVRIWDVK 688
D+ + + +++
Sbjct: 348 SDKRLYMGEIQ 358
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 154 bits (390), Expect = 2e-37
Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 1/249 (0%)
Frame = +2
Query: 326 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS 502
+ AGH AV+ V FSP+G LAS S DK ++IW + K E T+ H + V + S
Sbjct: 55 YRFAGHKDAVTCVNFSPSGHLLASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCS 113
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
D V+ASDDKT+K+W K L +L H N+V C F+P LIVS S D++V++WD
Sbjct: 114 DGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWD 173
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 862
+ +C+ + H V+ V F+ G+ I ++ D ++WD + + L+ + V
Sbjct: 174 KTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQH-YQLHSAAV 232
Query: 863 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 1042
+ + F P+G Y++ A+ D+TLK+ D +G+ L T GH+ + FS T G++ SG
Sbjct: 233 NALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTV--AFSRT-GEYFASG 289
Query: 1043 SEDNLVYIW 1069
D V +W
Sbjct: 290 GSDEQVMVW 298
Score = 139 bits (349), Expect = 9e-33
Identities = 90/291 (30%), Positives = 144/291 (49%)
Frame = +2
Query: 338 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 517
GH AV+SV FS N + LAS S D + +W +GHK ++ V +S +LL
Sbjct: 17 GHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCVNFSPSGHLL 76
Query: 518 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 697
S S DKT++IW + + H+ V +F V+ S D++V++W K
Sbjct: 77 ASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQK 136
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 877
L +L H + V F+ DG LIVS+S D ++WD S +C+ + + V++V F
Sbjct: 137 FLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGG-FVTYVDF 195
Query: 878 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 1057
P+G I AA +DNT+K+WD + L+ Y H + + S G ++V+ S D+
Sbjct: 196 HPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPS---GNYLVTASSDST 252
Query: 1058 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+ I +L ++ L GH + A T AS +D+ + +WKS+
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGG--SDEQVMVWKSN 301
Score = 136 bits (343), Expect = 4e-32
Identities = 80/254 (31%), Positives = 133/254 (52%)
Frame = +2
Query: 437 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 616
D E+ GH+ ++ V +S ++ L S S D L +W + GH + V C
Sbjct: 8 DPSLERHFKGHRDAVTSVDFSLNTKQLASGSMDSCLMVWHMKPQTRAYRFAGHKDAVTCV 67
Query: 617 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 796
NF+P +L+ SGS D++VRIW AH+ V +VHF DG V++S D
Sbjct: 68 NFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTV 127
Query: 797 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 976
++W T + L +L N V KFSP+G+ I++A+ D T+KLWD + +C+ +Y H
Sbjct: 128 KVWSTHRQKFLFSLSQHIN-WVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEH 186
Query: 977 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 1156
+ + +F G I + DN V +W+++T ++Q Q H+ V + + HP+ N
Sbjct: 187 GG--FVTYVDFH-PSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNY 243
Query: 1157 IASAALENDKTIKL 1198
+ +A+ +D T+K+
Sbjct: 244 LVTAS--SDSTLKI 255
>ref|NP_001073118.1| WD repeat domain-containing protein 83 [Bos taurus].
Length = 315
Score = 154 bits (389), Expect = 2e-37
Identities = 93/289 (32%), Positives = 155/289 (53%), Gaps = 2/289 (0%)
Frame = +2
Query: 350 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 529
AV +V+F+ +G + + +DK +K+W G +T SGH + D A S D++ L S
Sbjct: 27 AVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGG 86
Query: 530 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CL 703
DK + +WDV+SG+ ++ +GH+ V FN ++ +I+SGS D ++R WD ++ K +
Sbjct: 87 GDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSTIRCWDCRSRKPEPV 146
Query: 704 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 883
+TL D +S+V + +++ S DG R +D GQ + P++ + FS
Sbjct: 147 QTLDEARDGISSVKVS--DHEVLAGSVDGRVRRYDLRMGQLFSDYV---GSPITCICFSR 201
Query: 884 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 1063
+G+ L ++LD+TL+L D G+ L YTGHKN++Y + S +VS SED V+
Sbjct: 202 DGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNKEYKLDCCLS-ERDTHVVSCSEDGKVF 260
Query: 1064 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
W+L + L VV S HPTE + +A +I+ W+ +
Sbjct: 261 FWDLVEGALALALPVGPGVVQSLTYHPTEPCLLTAM---GGSIQCWREE 306
Score = 57.4 bits (137), Expect = 3e-08
Identities = 35/123 (28%), Positives = 58/123 (47%)
Frame = +2
Query: 569 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 748
K LKTL V FN N ++ D+++++W+ G L+T H V
Sbjct: 16 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 75
Query: 749 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 928
+ D S + S D +WD ASGQ ++ V+ V+F+ IL+ ++D+T++
Sbjct: 76 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAG-KVNTVQFNEEATVILSGSIDSTIR 134
Query: 929 LWD 937
WD
Sbjct: 135 CWD 137
>ref|NP_001092501.1| WD repeat-containing protein 51B [Bos taurus].
Length = 478
Score = 152 bits (385), Expect = 6e-37
Identities = 93/291 (31%), Positives = 146/291 (50%)
Frame = +2
Query: 338 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 517
GH A++SV FSPNG+ LA+ S D + +W GHK I+ V +S NLL
Sbjct: 16 GHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGNLL 75
Query: 518 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 697
SAS D+T+++W K H+ V +F+ + S S D+S+++W++ +
Sbjct: 76 ASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQR 135
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 877
L +L H+ V F+ DG LIVS S D +IWDT + QC+ D +FV F
Sbjct: 136 FLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNN-FSDFVGFANFVAF 194
Query: 878 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 1057
+PNG I +A D+T+K+WD K L+ Y H C+ + S G ++++ S D
Sbjct: 195 NPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPS---GNYLITASSDGT 251
Query: 1058 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+ I +L ++ LQGHT V + + + S D + LW+++
Sbjct: 252 LKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGA--DAQVLLWRTN 300
Score = 147 bits (370), Expect = 3e-35
Identities = 84/261 (32%), Positives = 135/261 (51%)
Frame = +2
Query: 317 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 496
A F GH ++SV+FSP G LAS+S D+ I++W H + V +
Sbjct: 51 ARAFRYVGHKDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDF 110
Query: 497 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 676
S+D L SAS+DK++K+W++ + L +L H+++V C F+P LIVS S D++++I
Sbjct: 111 SADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI 170
Query: 677 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 856
WD +C+ + V FN +G+ I S+ D +IWD + L+ +
Sbjct: 171 WDTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQH-YQVHSG 229
Query: 857 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 1036
V+ V F P+G Y++ A+ D TLK+ D +G+ + T GH + + +FS GG+
Sbjct: 230 GVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTV--SFS-KGGELFT 286
Query: 1037 SGSEDNLVYIWNLQTKEIVQK 1099
SG D V +W E+ K
Sbjct: 287 SGGADAQVLLWRTNFDELNYK 307
Score = 120 bits (302), Expect = 2e-27
Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 3/257 (1%)
Frame = +2
Query: 437 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 616
D E+ GHK I+ V +S + L + S D L +W + GH + +
Sbjct: 7 DPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSV 66
Query: 617 NFNPQSNLIVSGSFDESVRIW-DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 793
F+P NL+ S S D ++R+W K GK AH+ PV +V F+ DG + S+S D
Sbjct: 67 QFSPLGNLLASASRDRTIRLWIPDKRGKS-SEFKAHTAPVRSVDFSADGQFLASASEDKS 125
Query: 794 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 973
++W+ + L +L + V KFSP+G+ I++ + D T+K+WD + +C+ ++
Sbjct: 126 IKVWNMYRQRFLYSLYRHTH-WVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFS- 183
Query: 974 HKNEKYCIFANFSV--TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 1147
+ FANF G I S D+ V IW+++ +++Q Q H+ V + HP+
Sbjct: 184 ----DFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPS 239
Query: 1148 ENIIASAALENDKTIKL 1198
N + +A+ +D T+K+
Sbjct: 240 GNYLITAS--SDGTLKI 254
Score = 89.7 bits (221), Expect = 6e-18
Identities = 57/205 (27%), Positives = 99/205 (48%)
Frame = +2
Query: 587 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 766
KGH + +F+P + +GS+D + +W ++ H D +++V F+ G+L
Sbjct: 15 KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGNL 74
Query: 767 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 946
+ S+S D R+W + + PV V FS +G+++ +A+ D ++K+W+ +
Sbjct: 75 LASASRDRTIRLW-IPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYR 133
Query: 947 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 1126
+ L + H + C A FS G+ IVS SED + IW+ K+ V
Sbjct: 134 QRFLYSLYRHTHWVRC--AKFS-PDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFAN 190
Query: 1127 STACHPTENIIASAALENDKTIKLW 1201
A +P IASA +D T+K+W
Sbjct: 191 FVAFNPNGTCIASAG--SDHTVKIW 213
>ref|XP_001251626.3| PREDICTED: WD repeat domain 51B-like, partial [Bos taurus].
Length = 371
Score = 152 bits (385), Expect = 6e-37
Identities = 93/291 (31%), Positives = 146/291 (50%)
Frame = +2
Query: 338 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 517
GH A++SV FSPNG+ LA+ S D + +W GHK I+ V +S NLL
Sbjct: 16 GHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGNLL 75
Query: 518 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 697
SAS D+T+++W K H+ V +F+ + S S D+S+++W++ +
Sbjct: 76 ASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYRQR 135
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 877
L +L H+ V F+ DG LIVS S D +IWDT + QC+ D +FV F
Sbjct: 136 FLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNN-FSDFVGFANFVAF 194
Query: 878 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 1057
+PNG I +A D+T+K+WD K L+ Y H C+ + S G ++++ S D
Sbjct: 195 NPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPS---GNYLITASSDGT 251
Query: 1058 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+ I +L ++ LQGHT V + + + S D + LW+++
Sbjct: 252 LKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGA--DAQVLLWRTN 300
Score = 147 bits (370), Expect = 3e-35
Identities = 84/261 (32%), Positives = 135/261 (51%)
Frame = +2
Query: 317 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 496
A F GH ++SV+FSP G LAS+S D+ I++W H + V +
Sbjct: 51 ARAFRYVGHKDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDF 110
Query: 497 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 676
S+D L SAS+DK++K+W++ + L +L H+++V C F+P LIVS S D++++I
Sbjct: 111 SADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI 170
Query: 677 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 856
WD +C+ + V FN +G+ I S+ D +IWD + L+ +
Sbjct: 171 WDTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQH-YQVHSG 229
Query: 857 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 1036
V+ V F P+G Y++ A+ D TLK+ D +G+ + T GH + + +FS GG+
Sbjct: 230 GVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTV--SFS-KGGELFT 286
Query: 1037 SGSEDNLVYIWNLQTKEIVQK 1099
SG D V +W E+ K
Sbjct: 287 SGGADAQVLLWRTNFDELNYK 307
Score = 120 bits (302), Expect = 2e-27
Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 3/257 (1%)
Frame = +2
Query: 437 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 616
D E+ GHK I+ V +S + L + S D L +W + GH + +
Sbjct: 7 DPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSV 66
Query: 617 NFNPQSNLIVSGSFDESVRIW-DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 793
F+P NL+ S S D ++R+W K GK AH+ PV +V F+ DG + S+S D
Sbjct: 67 QFSPLGNLLASASRDRTIRLWIPDKRGKS-SEFKAHTAPVRSVDFSADGQFLASASEDKS 125
Query: 794 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 973
++W+ + L +L + V KFSP+G+ I++ + D T+K+WD + +C+ ++
Sbjct: 126 IKVWNMYRQRFLYSLYRHTH-WVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFS- 183
Query: 974 HKNEKYCIFANFSV--TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 1147
+ FANF G I S D+ V IW+++ +++Q Q H+ V + HP+
Sbjct: 184 ----DFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPS 239
Query: 1148 ENIIASAALENDKTIKL 1198
N + +A+ +D T+K+
Sbjct: 240 GNYLITAS--SDGTLKI 254
Score = 89.7 bits (221), Expect = 6e-18
Identities = 57/205 (27%), Positives = 99/205 (48%)
Frame = +2
Query: 587 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 766
KGH + +F+P + +GS+D + +W ++ H D +++V F+ G+L
Sbjct: 15 KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGNL 74
Query: 767 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 946
+ S+S D R+W + + PV V FS +G+++ +A+ D ++K+W+ +
Sbjct: 75 LASASRDRTIRLW-IPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKVWNMYR 133
Query: 947 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 1126
+ L + H + C A FS G+ IVS SED + IW+ K+ V
Sbjct: 134 QRFLYSLYRHTHWVRC--AKFS-PDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFAN 190
Query: 1127 STACHPTENIIASAALENDKTIKLW 1201
A +P IASA +D T+K+W
Sbjct: 191 FVAFNPNGTCIASAG--SDHTVKIW 213
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,853,977
Number of extensions: 1247108
Number of successful extensions: 9167
Number of sequences better than 1.0e-05: 220
Number of HSP's gapped: 6704
Number of HSP's successfully gapped: 689
Length of query: 504
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,140,958
Effective search space: 5613960326
Effective search space used: 5613960326
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013053
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013053
(1514 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis... 607 e-174
Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 187 3e-47
Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 187 3e-47
Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 187 3e-47
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 185 1e-46
Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 185 1e-46
Alignment gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor... 169 5e-42
Alignment gi|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isofor... 169 5e-42
Alignment gi|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isofor... 169 5e-42
Alignment gi|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Can... 169 5e-42
>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris].
Length = 334
Score = 607 bits (1565), Expect = e-174
Identities = 292/304 (96%), Positives = 297/304 (97%)
Frame = +2
Query: 302 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 481
VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 482 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 661
SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 662 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC A+ +C+K ++
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLIL 210
Query: 842 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 1021
DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 1202 KSDC 1213
KSDC
Sbjct: 331 KSDC 334
>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 1 [Canis familiaris].
Length = 372
Score = 187 bits (474), Expect = 3e-47
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 19/313 (6%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 63 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 122
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS S D+++++W+
Sbjct: 123 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 182
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--- 853
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L + ++
Sbjct: 183 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 242
Query: 854 -----PPVSFVKFS-----------PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 985
P S+ S G ++L+ + D T+K+WD S G CL T GH N
Sbjct: 243 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 302
Query: 986 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 1165
+ + +GGK+I+S ++D + +W+ + K ++ L H V S H T + +
Sbjct: 303 VRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 359
Query: 1166 AALENDKTIKLWK 1204
++ D+T+K+W+
Sbjct: 360 GSV--DQTVKVWE 370
Score = 84.7 bits (208), Expect = 2e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 270 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 329
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 330 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 372
>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 2 [Canis familiaris].
Length = 410
Score = 187 bits (474), Expect = 3e-47
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 19/313 (6%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--- 853
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L + ++
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280
Query: 854 -----PPVSFVKFS-----------PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 985
P S+ S G ++L+ + D T+K+WD S G CL T GH N
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 986 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 1165
+ + +GGK+I+S ++D + +W+ + K ++ L H V S H T + +
Sbjct: 341 VRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 1166 AALENDKTIKLWK 1204
++ D+T+K+W+
Sbjct: 398 GSV--DQTVKVWE 408
Score = 84.7 bits (208), Expect = 2e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 3 [Canis familiaris].
Length = 345
Score = 187 bits (474), Expect = 3e-47
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 19/313 (6%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 36 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 95
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS S D+++++W+
Sbjct: 96 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 155
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--- 853
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L + ++
Sbjct: 156 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 215
Query: 854 -----PPVSFVKFS-----------PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 985
P S+ S G ++L+ + D T+K+WD S G CL T GH N
Sbjct: 216 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 275
Query: 986 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 1165
+ + +GGK+I+S ++D + +W+ + K ++ L H V S H T + +
Sbjct: 276 VRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 332
Query: 1166 AALENDKTIKLWK 1204
++ D+T+K+W+
Sbjct: 333 GSV--DQTVKVWE 343
Score = 84.7 bits (208), Expect = 2e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 243 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 302
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 303 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 345
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 185 bits (469), Expect = 1e-46
Identities = 103/293 (35%), Positives = 162/293 (55%), Gaps = 1/293 (0%)
Frame = +2
Query: 329 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
TL GH V ++ F+ P G+ +A+ S DK K+W GK T GH I ++++
Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ 188
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
S L+ + S D T K+WD+ SG+ + TL+GHS + +FN + IV+GSFD +V +W+
Sbjct: 189 STLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEA 248
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
TG+ + TL H +S+ FN D SLI++ S D C +WD ++G+C+ TL D+ +
Sbjct: 249 DTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILD 308
Query: 866 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 1045
F GK I A+ D T +++ + KCL GH+ E I N G +++GS
Sbjct: 309 SC-FDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFN---PQGNRLLTGS 364
Query: 1046 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 1204
D IW+ QT + +Q L+GHTD + S A + +II + + D T ++W+
Sbjct: 365 ADETARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGS--KDNTCRIWR 415
Score = 170 bits (431), Expect = 3e-42
Identities = 90/291 (30%), Positives = 161/291 (55%), Gaps = 1/291 (0%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-S 508
L H +++V + +G + S D+ K+W G+ T+ GH+ + +A+++
Sbjct: 88 LRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYG 147
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ + + S DKT K+W V +GKC T +GH+ + C +FNPQS L+ +GS D + ++WD++
Sbjct: 148 DKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQ 207
Query: 689 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 868
+G+ + TL HS + ++ FN G IV+ S+D +W+ +G+ + TLI +S
Sbjct: 208 SGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLI-GHCAEISS 266
Query: 869 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 1048
F+ + IL ++D T LWD S GKC+ T TGH +E + + F T GK I + S
Sbjct: 267 ALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDE--ILDSCFDYT-GKLIATASA 323
Query: 1049 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
D +++ T++ + KL+GH + + +P N + + + D+T ++W
Sbjct: 324 DGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSA--DETARIW 372
Score = 138 bits (347), Expect = 2e-32
Identities = 68/203 (33%), Positives = 111/203 (54%)
Frame = +2
Query: 326 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
FTL GH+ + S+ F+ +G+ + + S D + +W A G+ T+ GH IS ++ D
Sbjct: 213 FTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWD 272
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
+L+++ S DKT +WD S+GKC+ TL GH + + F+ LI + S D + R++
Sbjct: 273 CSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVFSA 332
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
T KCL L H +S + FN G+ +++ S D RIWD +GQCL+ L + +
Sbjct: 333 ATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQVL-EGHTDEIF 391
Query: 866 FVKFSPNGKYILAATLDNTLKLW 934
F+ G I+ + DNT ++W
Sbjct: 392 SCAFNYKGDIIITGSKDNTCRIW 414
Score = 105 bits (263), Expect = 9e-23
Identities = 58/169 (34%), Positives = 90/169 (53%)
Frame = +2
Query: 704 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 883
K L AH P++ V N+ GS ++ SYD C++WDTASG+ L TL N + +P
Sbjct: 86 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNP 145
Query: 884 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 1063
G I + D T KLW GKC T+ GH E C+ N T + +GS D
Sbjct: 146 YGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST---LVATGSMDTTAK 202
Query: 1064 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+W++Q+ E V L+GH+ +IS + + + + I + + D T+ +W++D
Sbjct: 203 LWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSF--DHTVAVWEAD 249
>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 5 [Canis familiaris].
Length = 415
Score = 185 bits (469), Expect = 1e-46
Identities = 100/320 (31%), Positives = 164/320 (51%), Gaps = 26/320 (8%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------- 838
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280
Query: 839 ------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
+++NP K G ++L+ + D T+K+WD S G CL T
Sbjct: 281 CISWAPESSYSSISEATGSEEENPRTK--KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 338
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N + + +GGK+I+S ++D + +W+ + K ++ L H V S H
Sbjct: 339 LVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 395
Query: 1145 TENIIASAALENDKTIKLWK 1204
T + + ++ D+T+K+W+
Sbjct: 396 TAPYVVTGSV--DQTVKVWE 413
Score = 84.7 bits (208), Expect = 2e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 313 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 372
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 373 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 415
>ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis
familiaris].
Length = 589
Score = 169 bits (429), Expect = 5e-42
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 328
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 329 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 386
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 387 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 441
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 442 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 491
Query: 1079 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 492 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 531
Score = 143 bits (360), Expect = 5e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 247 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 305
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 306 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 361
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 362 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 418
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 419 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 471
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 472 KDNILVSG--NADSTVKIW 488
Score = 107 bits (267), Expect = 3e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 379 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 434
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 435 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 492
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 493 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 543
>ref|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 5 [Canis
familiaris].
Length = 637
Score = 169 bits (429), Expect = 5e-42
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 321 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 376
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 377 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 434
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 435 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 489
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 490 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 539
Query: 1079 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 540 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 579
Score = 143 bits (360), Expect = 5e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 295 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 353
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 354 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 409
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 410 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 466
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 467 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 519
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 520 KDNILVSG--NADSTVKIW 536
Score = 107 bits (267), Expect = 3e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 427 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 482
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 483 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 540
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 541 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 591
>ref|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Canis
familiaris].
Length = 627
Score = 169 bits (429), Expect = 5e-42
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 366
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 367 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 424
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 425 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 479
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 480 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 529
Query: 1079 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 530 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 569
Score = 143 bits (360), Expect = 5e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 285 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 343
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 344 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 399
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 400 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 456
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 457 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 509
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 510 KDNILVSG--NADSTVKIW 526
Score = 107 bits (267), Expect = 3e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 417 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 472
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 473 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 530
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 531 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 581
>ref|XP_854730.1| PREDICTED: similar to WD-repeat protein 57 [Canis familiaris].
Length = 358
Score = 169 bits (429), Expect = 5e-42
Identities = 100/290 (34%), Positives = 160/290 (55%), Gaps = 10/290 (3%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 508
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 122
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 679
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 123 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 180
Query: 680 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 859
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 181 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADS- 238
Query: 860 VSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTG--HKNEKYCIFANFSVTG 1021
V+ + S G Y+L+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 239 VTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 298
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 1171
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 299 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 347
Score = 109 bits (273), Expect = 6e-24
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 2/208 (0%)
Frame = +2
Query: 584 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 757
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 121
Query: 758 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 937
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 122 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 181
Query: 938 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 1117
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 182 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 237
Query: 1118 VVISTACHPTENIIASAALENDKTIKLW 1201
V + + + S A++N T+++W
Sbjct: 238 SVTGLSLSSEGSYLLSNAMDN--TVRVW 263
Score = 84.3 bits (207), Expect = 3e-16
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Frame = +2
Query: 341 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 520
+T V +V F+ + + S D IK+W K T+ GH ++ ++ SS+ + L+
Sbjct: 193 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLL 252
Query: 521 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 676
S + D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 253 SNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 312
Query: 677 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 787
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 313 WDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349
Score = 62.4 bits (150), Expect = 1e-09
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Frame = +2
Query: 320 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 475
L +T+ GH +V+ + S G +L S++ D +++W F+ + +
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 287
Query: 476 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 655
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 347
Query: 656 FDESVRIWDVK 688
D+ + + +++
Sbjct: 348 SDKRLYMGEIQ 358
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,205,626
Number of extensions: 1287325
Number of successful extensions: 10341
Number of sequences better than 1.0e-05: 289
Number of HSP's gapped: 7212
Number of HSP's successfully gapped: 873
Length of query: 504
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 397
Effective length of database: 15,307,552
Effective search space: 6077098144
Effective search space used: 6077098144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013053
(1514 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 632 0.0
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 562 e-160
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 186 4e-47
Alignment gi|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotei... 169 3e-42
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 167 1e-41
Alignment gi|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protei... 167 1e-41
Alignment gi|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protei... 167 1e-41
Alignment gi|XP_003123369.1| PREDICTED: WD repeat domain-containing prote... 157 1e-38
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 153 3e-37
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 145 8e-35
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 632 bits (1629), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Frame = +2
Query: 302 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 481
VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 482 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 661
SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 662 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 842 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 1021
DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 1202 KSDC 1213
KSDC
Sbjct: 331 KSDC 334
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 562 bits (1448), Expect = e-160
Identities = 265/302 (87%), Positives = 280/302 (92%)
Frame = +2
Query: 305 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 484
KPNY LKFTL GHT+AVSSVKFSPNGEWLASSSADK+I IWGAYDGK+EK + GH L IS
Sbjct: 28 KPNYTLKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGKYEKALKGHSLEIS 87
Query: 485 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 664
DVAWSSDS LVSASDDKTLKIWDV GKCLKTLKGHSNYVFCCNFNP SNLI+SGSFDE
Sbjct: 88 DVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDE 147
Query: 665 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 844
SV+IW+VKTG+CLKTL AHSDPVSAVHFN GSLIVS SYDG+CRIWD ASGQCLKTL+D
Sbjct: 148 SVKIWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSYDGVCRIWDAASGQCLKTLVD 207
Query: 845 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 1024
DDNPP+SFVKFSPNGKYIL ATLDNTLKLWDYS+G+CLKTYTGHKNEKYCIFANFSVT G
Sbjct: 208 DDNPPISFVKFSPNGKYILIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTSG 267
Query: 1025 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 1204
KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS ACHPTENIIASAAL NDKT+KLW
Sbjct: 268 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENIIASAALGNDKTVKLWM 327
Query: 1205 SD 1210
S+
Sbjct: 328 SN 329
Score = 89.7 bits (221), Expect = 4e-18
Identities = 59/186 (31%), Positives = 97/186 (52%)
Frame = +2
Query: 644 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 823
+S S ++S ++ + TL H++ VS+V F+ +G + SSS D + IW G+
Sbjct: 15 LSSSANQSKQVAEKPNYTLKFTLVGHTEAVSSVKFSPNGEWLASSSADKVIIIWGAYDGK 74
Query: 824 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 1003
K L + +S V +S + +++A+ D TLK+WD GKCLKT GH N +C
Sbjct: 75 YEKAL-KGHSLEISDVAWSSDSGRLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFC--C 131
Query: 1004 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 1183
NF+ I+SGS D V IW ++T ++ L H+D V + + ++I S + D
Sbjct: 132 NFN-PPSNLIISGSFDESVKIWEVKTGRCLKTLSAHSDPVSAVHFNCKGSLIVSGSY--D 188
Query: 1184 KTIKLW 1201
++W
Sbjct: 189 GVCRIW 194
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 186 bits (471), Expect = 4e-47
Identities = 99/313 (31%), Positives = 165/313 (52%), Gaps = 19/313 (6%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS + D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWE 220
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--- 853
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L + ++
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280
Query: 854 -----PPVSFVKFS-----------PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 985
P S+ S G ++L+ + D T+K+WD S G CL T GH N
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 986 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 1165
+ + +GGK+I+S ++D + +W+ + K ++ L H V S H T + +
Sbjct: 341 VRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 1166 AALENDKTIKLWK 1204
++ D+T+K+W+
Sbjct: 398 GSV--DQTVKVWE 408
Score = 84.7 bits (208), Expect = 1e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>ref|XP_003356314.1| PREDICTED: u5 small nuclear ribonucleoprotein 40 kDa protein-like
[Sus scrofa].
Length = 358
Score = 169 bits (429), Expect = 3e-42
Identities = 100/290 (34%), Positives = 160/290 (55%), Gaps = 10/290 (3%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 508
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 122
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 679
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 123 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 180
Query: 680 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 859
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 181 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADS- 238
Query: 860 VSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTG--HKNEKYCIFANFSVTG 1021
V+ + S G Y+L+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 239 VTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 298
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 1171
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 299 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 347
Score = 109 bits (273), Expect = 4e-24
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 2/208 (0%)
Frame = +2
Query: 584 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 757
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 121
Query: 758 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 937
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 122 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 181
Query: 938 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 1117
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 182 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 237
Query: 1118 VVISTACHPTENIIASAALENDKTIKLW 1201
V + + + S A++N T+++W
Sbjct: 238 SVTGLSLSSEGSYLLSNAMDN--TVRVW 263
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Frame = +2
Query: 341 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 520
+T V +V F+ + + S D IK+W K T+ GH ++ ++ SS+ + L+
Sbjct: 193 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLL 252
Query: 521 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 676
S + D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 253 SNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 312
Query: 677 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 787
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 313 WDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSD 349
Score = 62.4 bits (150), Expect = 6e-10
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Frame = +2
Query: 320 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 475
L +T+ GH +V+ + S G +L S++ D +++W F+ + +
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 287
Query: 476 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 655
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSAS 347
Query: 656 FDESVRIWDVK 688
D+ + + +++
Sbjct: 348 SDKRLYMGEIQ 358
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 167 bits (424), Expect = 1e-41
Identities = 97/279 (34%), Positives = 160/279 (57%), Gaps = 10/279 (3%)
Frame = +2
Query: 395 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIWDVSSG 568
S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W+ +G
Sbjct: 278 SGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETG 333
Query: 569 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 748
+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V V +
Sbjct: 334 ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 391
Query: 749 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 928
DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +LD +++
Sbjct: 392 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSLDTSIR 446
Query: 929 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQTKEIV 1093
+WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++T + +
Sbjct: 447 VWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIKTGQCL 496
Query: 1094 QKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
Q LQG H V T +N + +++ +D T+KLW
Sbjct: 497 QTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 531
Score = 145 bits (365), Expect = 8e-35
Identities = 85/261 (32%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Frame = +2
Query: 329 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 508
TL GHT V S + N + S S D+ +K+W A G+ T+ GH +
Sbjct: 298 TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHE 353
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+VS S D TL++WD+ +G+CL L GH V C ++ +VSG++D V++WD +
Sbjct: 354 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE 411
Query: 689 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 868
T CL TL H++ V ++ F DG +VS S D R+WD +G C+ TL + S
Sbjct: 412 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSG 468
Query: 869 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG---HKNEKYCIFANFSVTGGKWIVS 1039
++ N +++ D+T+K+WD G+CL+T G H++ C+ N ++++
Sbjct: 469 MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVIT 521
Query: 1040 GSEDNLVYIWNLQTKEIVQKL 1102
S+D V +W+L+T E ++ L
Sbjct: 522 SSDDGTVKLWDLKTGEFIRNL 542
>ref|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 2 [Sus
scrofa].
Length = 705
Score = 167 bits (424), Expect = 1e-41
Identities = 97/279 (34%), Positives = 160/279 (57%), Gaps = 10/279 (3%)
Frame = +2
Query: 395 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIWDVSSG 568
S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W+ +G
Sbjct: 394 SGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETG 449
Query: 569 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 748
+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V V +
Sbjct: 450 ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 507
Query: 749 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 928
DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +LD +++
Sbjct: 508 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSLDTSIR 562
Query: 929 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQTKEIV 1093
+WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++T + +
Sbjct: 563 VWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIKTGQCL 612
Query: 1094 QKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
Q LQG H V T +N + +++ +D T+KLW
Sbjct: 613 QTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 647
Score = 145 bits (365), Expect = 8e-35
Identities = 85/261 (32%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Frame = +2
Query: 329 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 508
TL GHT V S + N + S S D+ +K+W A G+ T+ GH +
Sbjct: 414 TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHE 469
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+VS S D TL++WD+ +G+CL L GH V C ++ +VSG++D V++WD +
Sbjct: 470 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE 527
Query: 689 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 868
T CL TL H++ V ++ F DG +VS S D R+WD +G C+ TL + S
Sbjct: 528 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSG 584
Query: 869 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG---HKNEKYCIFANFSVTGGKWIVS 1039
++ N +++ D+T+K+WD G+CL+T G H++ C+ N ++++
Sbjct: 585 MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVIT 637
Query: 1040 GSEDNLVYIWNLQTKEIVQKL 1102
S+D V +W+L+T E ++ L
Sbjct: 638 SSDDGTVKLWDLKTGEFIRNL 658
>ref|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 1 [Sus
scrofa].
Length = 627
Score = 167 bits (424), Expect = 1e-41
Identities = 97/279 (34%), Positives = 160/279 (57%), Gaps = 10/279 (3%)
Frame = +2
Query: 395 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIWDVSSG 568
S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W+ +G
Sbjct: 316 SGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETG 371
Query: 569 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 748
+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V V +
Sbjct: 372 ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 429
Query: 749 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 928
DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +LD +++
Sbjct: 430 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSLDTSIR 484
Query: 929 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQTKEIV 1093
+WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++T + +
Sbjct: 485 VWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIKTGQCL 534
Query: 1094 QKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
Q LQG H V T +N + +++ +D T+KLW
Sbjct: 535 QTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 569
Score = 145 bits (365), Expect = 8e-35
Identities = 85/261 (32%), Positives = 139/261 (53%), Gaps = 3/261 (1%)
Frame = +2
Query: 329 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 508
TL GHT V S + N + S S D+ +K+W A G+ T+ GH +
Sbjct: 336 TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHE 391
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+VS S D TL++WD+ +G+CL L GH V C ++ +VSG++D V++WD +
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE 449
Query: 689 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 868
T CL TL H++ V ++ F DG +VS S D R+WD +G C+ TL + S
Sbjct: 450 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSG 506
Query: 869 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG---HKNEKYCIFANFSVTGGKWIVS 1039
++ N +++ D+T+K+WD G+CL+T G H++ C+ N ++++
Sbjct: 507 MELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVIT 559
Query: 1040 GSEDNLVYIWNLQTKEIVQKL 1102
S+D V +W+L+T E ++ L
Sbjct: 560 SSDDGTVKLWDLKTGEFIRNL 580
>ref|XP_003123369.1| PREDICTED: WD repeat domain-containing protein 83-like [Sus scrofa].
Length = 311
Score = 157 bits (398), Expect = 1e-38
Identities = 96/289 (33%), Positives = 156/289 (53%), Gaps = 2/289 (0%)
Frame = +2
Query: 350 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 529
AV +V+F+ +G + + +DK +K+W G +T SGH + D A S D++ L S
Sbjct: 27 AVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGG 86
Query: 530 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CL 703
DK + +WDV+SG+ ++ +GH+ V FN ++ +I+SGS D SVR WD ++ K +
Sbjct: 87 GDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPV 146
Query: 704 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 883
+TL D +S+V + +++ S DG R +D GQ + P++ FS
Sbjct: 147 QTLDEARDGISSVKVS--DHEVLAGSVDGRVRRYDLRMGQLFSDYV---GSPITCTCFSR 201
Query: 884 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 1063
+G+ L ++LD+TL+L D G+ L YTGHKN++Y + S +VS SED V+
Sbjct: 202 DGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLS-ERDTHVVSCSEDGKVF 260
Query: 1064 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
W+L +V L VV S A HPTE + +A +++ W+ +
Sbjct: 261 FWDLVEGVLVLALPVGPSVVQSLAYHPTEPCLLTAM---GGSVQCWREE 306
Score = 55.5 bits (132), Expect = 8e-08
Identities = 34/123 (27%), Positives = 58/123 (47%)
Frame = +2
Query: 569 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 748
K LKTL V FN N ++ D+++++W+ G L+T H V
Sbjct: 16 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 75
Query: 749 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 928
+ D S + S D +WD ASGQ ++ V+ V+F+ IL+ ++D++++
Sbjct: 76 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAG-KVNTVQFNEEATVILSGSIDSSVR 134
Query: 929 LWD 937
WD
Sbjct: 135 CWD 137
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 153 bits (386), Expect = 3e-37
Identities = 89/252 (35%), Positives = 139/252 (55%), Gaps = 1/252 (0%)
Frame = +2
Query: 317 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVA 493
A +FT GH AV+ V FSP+G LAS S DK ++IW + K E T+ H + V
Sbjct: 54 AYRFT--GHKDAVTCVNFSPSGHLLASGSRDKTVRIW-VPNIKGESTVFRAHTATVRSVH 110
Query: 494 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 673
+ SD V+ASDDKT+K+W K L +L H N+V C F+P LIVS S D++V+
Sbjct: 111 FCSDGQSFVTASDDKTIKVWSTHRQKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVK 170
Query: 674 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 853
+WD + +C+ + H V+ V F+ G+ + ++ D ++WD + + L+ +
Sbjct: 171 LWDKTSRECVHSYCEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQH-YQLHS 229
Query: 854 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 1033
V+ + F P+G Y++ A+ D+TLK+ D +G+ L T GH+ + FS T G++
Sbjct: 230 AAVNALSFHPSGNYLVTASSDSTLKILDLMEGRLLYTLHGHQGPATTV--AFSRT-GEYF 286
Query: 1034 VSGSEDNLVYIW 1069
SG D V +W
Sbjct: 287 ASGGSDEQVMVW 298
Score = 135 bits (341), Expect = 5e-32
Identities = 87/291 (29%), Positives = 143/291 (49%)
Frame = +2
Query: 338 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 517
GH AV+ V FS N + LAS S D + +W +GHK ++ V +S +LL
Sbjct: 17 GHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLL 76
Query: 518 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 697
S S DKT++IW + + H+ V +F V+ S D+++++W K
Sbjct: 77 ASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTIKVWSTHRQK 136
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 877
L +L H + V F+ DG LIVS+S D ++WD S +C+ + + V++V F
Sbjct: 137 FLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEHGG-FVTYVDF 195
Query: 878 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 1057
P+G + AA +DNT+K+WD + L+ Y H + + S G ++V+ S D+
Sbjct: 196 HPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPS---GNYLVTASSDST 252
Query: 1058 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+ I +L ++ L GH + A T AS +D+ + +WKS+
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGG--SDEQVMVWKSN 301
Score = 134 bits (337), Expect = 1e-31
Identities = 79/254 (31%), Positives = 132/254 (51%)
Frame = +2
Query: 437 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 616
D E+ GH+ ++ V +S + L S S D L +W + GH + V C
Sbjct: 8 DPSLERHFKGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCV 67
Query: 617 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 796
NF+P +L+ SGS D++VRIW AH+ V +VHF DG V++S D
Sbjct: 68 NFSPSGHLLASGSRDKTVRIWVPNIKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTI 127
Query: 797 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 976
++W T + L +L N V KFSP+G+ I++A+ D T+KLWD + +C+ +Y H
Sbjct: 128 KVWSTHRQKFLFSLSQHIN-WVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEH 186
Query: 977 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 1156
+ + +F G + + DN V +W+++T ++Q Q H+ V + + HP+ N
Sbjct: 187 GG--FVTYVDFH-PSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNY 243
Query: 1157 IASAALENDKTIKL 1198
+ +A+ +D T+K+
Sbjct: 244 LVTAS--SDSTLKI 255
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 145 bits (365), Expect = 8e-35
Identities = 85/292 (29%), Positives = 147/292 (50%)
Frame = +2
Query: 326 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
+T + +++V + + +A AD +++W K + V ++D
Sbjct: 326 YTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKK-----------LRSVKQAAD 374
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
+L+ SDD +I D + LK L GHS V+ +F+P N ++S S D +VR+W +
Sbjct: 375 LSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 434
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
+T CL H+ PV F+ G VS +D + R+W T Q L+ + V+
Sbjct: 435 QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLR-IFAGHLADVN 493
Query: 866 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 1045
+F PN Y+ + D T++LWD G C++ +TGHK + + FS G+++ +G+
Sbjct: 494 CTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSL--TFS-PNGRFLATGA 550
Query: 1046 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
D V +W++ +V +L+GHTD V S I+AS +++N T++LW
Sbjct: 551 TDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDN--TVRLW 600
Score = 120 bits (302), Expect = 2e-27
Identities = 61/205 (29%), Positives = 101/205 (49%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH+ V FSP+ +L SSS D +++W GH + D +S
Sbjct: 401 LYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGY 460
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
VS D+ ++W + L+ GH V C F+P SN + +GS D +VR+WDV
Sbjct: 461 YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLN 520
Query: 692 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 871
G C++ H P+ ++ F+ +G + + + DG +WD G + L V +
Sbjct: 521 GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGEL-KGHTDTVCSL 579
Query: 872 KFSPNGKYILAATLDNTLKLWDYSK 946
+FS +G+ + + ++DNT++LWD K
Sbjct: 580 RFSRDGEILASGSMDNTVRLWDAVK 604
Score = 115 bits (289), Expect = 5e-26
Identities = 68/242 (28%), Positives = 115/242 (47%)
Frame = +2
Query: 347 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 526
K + SVK + + + S D L +I K + GH + ++S D N L+S+
Sbjct: 364 KKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSS 423
Query: 527 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 706
S+D T+++W + + CL KGH+ V+ F+P VSG D R+W + L+
Sbjct: 424 SEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLR 483
Query: 707 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 886
H V+ F+ + + + + S D R+WD +G C++ + P+ + FSPN
Sbjct: 484 IFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVR-IFTGHKGPIHSLTFSPN 542
Query: 887 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 1066
G+++ D + LWD G + GH + + FS G+ + SGS DN V +
Sbjct: 543 GRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSL--RFS-RDGEILASGSMDNTVRL 599
Query: 1067 WN 1072
W+
Sbjct: 600 WD 601
Score = 87.8 bits (216), Expect = 1e-17
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +2
Query: 335 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 514
AGH V+ +F PN ++A+ SAD+ +++W +G + +GHK I + +S +
Sbjct: 486 AGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRF 545
Query: 515 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKT 691
L + + D + +WD+ G + LKGH++ V F+ ++ SGS D +VR+WD VK
Sbjct: 546 LATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKA 605
Query: 692 GKCLKT 709
+ L+T
Sbjct: 606 FEDLET 611
Score = 68.2 bits (165), Expect = 1e-11
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 30/198 (15%)
Frame = +2
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-------------------DTASG 820
C T ++AV D SLI D R+W D S
Sbjct: 324 CFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESD 383
Query: 821 QCLKTLIDD-----------DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 967
L+ ++D+ + PV FSP+ Y+L+++ D T++LW CL Y
Sbjct: 384 DVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGY 443
Query: 968 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 1147
GH Y ++ G + VSG D + +W + ++ GH V T HP
Sbjct: 444 KGH---NYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPN 500
Query: 1148 ENIIASAALENDKTIKLW 1201
N +A+ + D+T++LW
Sbjct: 501 SNYVATGSA--DRTVRLW 516
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,689,751
Number of extensions: 826109
Number of successful extensions: 6309
Number of sequences better than 1.0e-05: 173
Number of HSP's gapped: 4594
Number of HSP's successfully gapped: 506
Length of query: 504
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,779,541
Effective search space: 3520595941
Effective search space used: 3520595941
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013053
(1514 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 632 0.0
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 543 e-154
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase IB s... 187 2e-47
Alignment gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ... 170 3e-42
Alignment gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform... 170 3e-42
Alignment gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform... 170 3e-42
Alignment gi|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 169 7e-42
Alignment gi|NP_080675.2| WD repeat domain-containing protein 83 [Mus mus... 155 6e-38
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 154 2e-37
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 146 5e-35
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 632 bits (1629), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Frame = +2
Query: 302 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 481
VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 482 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 661
SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 662 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 842 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 1021
DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 1202 KSDC 1213
KSDC
Sbjct: 331 KSDC 334
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 543 bits (1398), Expect = e-154
Identities = 253/303 (83%), Positives = 281/303 (92%)
Frame = +2
Query: 305 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 484
KPNYAL+ TLAGH+ A+SSVKFSPNGEWLASS+AD LI IWGAYDG +KT+ GH L IS
Sbjct: 26 KPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEIS 85
Query: 485 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 664
DVAWSSDS+ LVSASDDKTLK+WD+ SGKCLKTLKGHS++VFCC+FNP SNLIVSGSFDE
Sbjct: 86 DVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDE 145
Query: 665 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 844
SV+IW+VKTGKCLKTL AHSDP+SAV+FN +GSLIVS SYDGLCRIWD ASGQCL+TL D
Sbjct: 146 SVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLAD 205
Query: 845 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 1024
+ NPPVSFVKFSPNGKYIL ATLDNTLKLWDYS+G+CLKTYTGHKNEKYC+FA+FSVTG
Sbjct: 206 EGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGR 265
Query: 1025 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 1204
KW+VSGSEDN+VYIWNLQTKEIVQ+LQGHTDVVIS ACHPT+NIIASAALENDKTIK+W
Sbjct: 266 KWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVWS 325
Query: 1205 SDC 1213
SDC
Sbjct: 326 SDC 328
>ref|NP_038653.1| platelet-activating factor acetylhydrolase IB subunit alpha [Mus
musculus].
Length = 410
Score = 187 bits (474), Expect = 2e-47
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 19/313 (6%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--- 853
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L + ++
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280
Query: 854 -----PPVSFVKFS-----------PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 985
P S+ S G ++L+ + D T+K+WD S G CL T GH N
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 986 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 1165
+ + +GGK+I+S ++D + +W+ + K ++ L H V S H T + +
Sbjct: 341 VRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 1166 AALENDKTIKLWK 1204
++ D+T+K+W+
Sbjct: 398 GSV--DQTVKVWE 408
Score = 84.7 bits (208), Expect = 2e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
Length = 629
Score = 170 bits (430), Expect = 3e-42
Identities = 96/282 (34%), Positives = 162/282 (57%), Gaps = 8/282 (2%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 368
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 369 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 426
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 427 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 481
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 482 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 531
Query: 1079 TKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLW 1201
T + +Q LQG + + C +N + +++ +D T+KLW
Sbjct: 532 TGQCLQTLQGPSKHQSAVTCLQFNKNFVITSS--DDGTVKLW 571
Score = 143 bits (360), Expect = 4e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 287 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 345
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 346 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 401
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 402 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 458
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 459 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 511
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 512 KDNILVSG--NADSTVKIW 528
Score = 107 bits (267), Expect = 2e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 419 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 474
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 475 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 532
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 533 GQCLQTLQGPSKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 583
>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 170 bits (430), Expect = 3e-42
Identities = 96/282 (34%), Positives = 162/282 (57%), Gaps = 8/282 (2%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 394 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 449
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 450 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 507
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 508 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 562
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 563 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 612
Query: 1079 TKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLW 1201
T + +Q LQG + + C +N + +++ +D T+KLW
Sbjct: 613 TGQCLQTLQGPSKHQSAVTCLQFNKNFVITSS--DDGTVKLW 652
Score = 143 bits (360), Expect = 4e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 368 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 426
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 427 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 482
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 483 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 539
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 540 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 592
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 593 KDNILVSG--NADSTVKIW 609
Score = 107 bits (267), Expect = 2e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 500 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 555
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 556 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 613
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 614 GQCLQTLQGPSKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 664
>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 170 bits (430), Expect = 3e-42
Identities = 96/282 (34%), Positives = 162/282 (57%), Gaps = 8/282 (2%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 394 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 449
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 450 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 507
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 508 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 562
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 563 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 612
Query: 1079 TKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLW 1201
T + +Q LQG + + C +N + +++ +D T+KLW
Sbjct: 613 TGQCLQTLQGPSKHQSAVTCLQFNKNFVITSS--DDGTVKLW 652
Score = 143 bits (360), Expect = 4e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 368 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 426
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 427 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 482
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 483 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 539
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 540 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 592
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 593 KDNILVSG--NADSTVKIW 609
Score = 107 bits (267), Expect = 2e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 500 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 555
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 556 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 613
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 614 GQCLQTLQGPSKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 664
>ref|NP_079921.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Mus musculus].
Length = 358
Score = 169 bits (427), Expect = 7e-42
Identities = 99/290 (34%), Positives = 160/290 (55%), Gaps = 10/290 (3%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 508
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 122
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 679
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 123 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 180
Query: 680 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 859
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 181 DIRKKAAVQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADS- 238
Query: 860 VSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTG--HKNEKYCIFANFSVTG 1021
V+ + S G Y+L+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 239 VTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 298
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 1171
K I +GS D VY+W+ ++ ++ KL GH + A HP E II SA+
Sbjct: 299 SK-IAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSAS 347
Score = 109 bits (272), Expect = 6e-24
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 2/208 (0%)
Frame = +2
Query: 584 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 757
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 63 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 121
Query: 758 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 937
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 122 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 181
Query: 938 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 1117
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 182 IRKKAAVQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 237
Query: 1118 VVISTACHPTENIIASAALENDKTIKLW 1201
V + + + S A++N T+++W
Sbjct: 238 SVTGLSLSSEGSYLLSNAMDN--TVRVW 263
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
Frame = +2
Query: 341 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 520
+T V +V F+ + + S D IK+W K T+ GH ++ ++ SS+ + L+
Sbjct: 193 NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLL 252
Query: 521 SASDDKTLKIWDVS----SGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRI 676
S + D T+++WDV +C+K +G+ + C+++P + I +GS D V +
Sbjct: 253 SNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV 312
Query: 677 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 787
WD + + L LP H+ ++ V F+ D +I+S+S D
Sbjct: 313 WDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASSD 349
Score = 62.4 bits (150), Expect = 9e-10
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Frame = +2
Query: 320 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--------FEKTISGHKL 475
L +T+ GH +V+ + S G +L S++ D +++W F+ + +
Sbjct: 228 LTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEK 287
Query: 476 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 655
+ +WS D + + + S D+ + +WD +S + L L GH+ + F+P +I+S S
Sbjct: 288 NLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSAS 347
Query: 656 FDESVRIWDVK 688
D+ + + +++
Sbjct: 348 SDKRLYMGEIQ 358
>ref|NP_080675.2| WD repeat domain-containing protein 83 [Mus musculus].
Length = 315
Score = 155 bits (393), Expect = 6e-38
Identities = 96/289 (33%), Positives = 157/289 (54%), Gaps = 2/289 (0%)
Frame = +2
Query: 350 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 529
AV +V+F+ +G + + +DK +K+W G +T SGH + D A S D++ L S
Sbjct: 27 AVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSHLCSGG 86
Query: 530 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CL 703
DKT+ +WDV++G+ ++ +GH+ V FN ++ +I+SGS D SVR WD ++ K +
Sbjct: 87 GDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPV 146
Query: 704 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 883
+TL D +S+V + I++ S DG R +D GQ + P++ FS
Sbjct: 147 QTLDEARDGISSVKVS--DHEILAGSVDGRVRRYDLRMGQVSSDYV---GSPITCTCFSR 201
Query: 884 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 1063
+G+ L ++LD+TL+L D G+ L Y GHKN++Y + S +VS SED V+
Sbjct: 202 DGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLS-ERDTHVVSCSEDGKVF 260
Query: 1064 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
W+L + L ++VV S A HPTE + +A +I+ W+ +
Sbjct: 261 FWDLVEGALALALPVGSNVVQSLAYHPTEPCLLTAM---GGSIQYWREE 306
Score = 53.5 bits (127), Expect = 4e-07
Identities = 32/123 (26%), Positives = 58/123 (47%)
Frame = +2
Query: 569 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 748
K +KTL V FN N ++ D+++++W+ G L+T H V
Sbjct: 16 KRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 75
Query: 749 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 928
+ D S + S D +WD A+GQ ++ V+ V+F+ IL+ ++D++++
Sbjct: 76 SFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAG-KVNTVQFNEEATVILSGSIDSSVR 134
Query: 929 LWD 937
WD
Sbjct: 135 CWD 137
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 154 bits (389), Expect = 2e-37
Identities = 90/252 (35%), Positives = 140/252 (55%), Gaps = 1/252 (0%)
Frame = +2
Query: 317 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVA 493
A +FT GH AV+ V FSP+G LAS S DK ++IW + K E T+ H + V
Sbjct: 54 AYRFT--GHKDAVTCVNFSPSGHLLASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVH 110
Query: 494 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 673
+ SD LV+ASDDKT+K+W + L +L H N+V C F+P LIVS S D++V+
Sbjct: 111 FCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVK 170
Query: 674 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 853
+WD + +C+ + H V+ V F+ G+ I ++ D ++WD + + L+ +
Sbjct: 171 LWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQH-YQLHS 229
Query: 854 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 1033
V+ + F P+G Y++ A+ D+TLK+ D +G+ L T GH+ + FS T G++
Sbjct: 230 AAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTV--AFSRT-GEYF 286
Query: 1034 VSGSEDNLVYIW 1069
SG D V +W
Sbjct: 287 ASGGSDEQVMVW 298
Score = 138 bits (348), Expect = 1e-32
Identities = 82/254 (32%), Positives = 134/254 (52%)
Frame = +2
Query: 437 DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 616
D E+ GH+ ++ V +S ++ L S S D TL IW + GH + V C
Sbjct: 8 DPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCV 67
Query: 617 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 796
NF+P +L+ SGS D++VRIW AH+ V +VHF DG +V++S D
Sbjct: 68 NFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTV 127
Query: 797 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 976
++W T + L +L N V KFSP+G+ I++A+ D T+KLWD + +C+ +Y H
Sbjct: 128 KVWSTHRQRFLFSLTQHIN-WVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEH 186
Query: 977 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 1156
+ + +F G I + DN V +W+ +T ++Q Q H+ V + + HP+ N
Sbjct: 187 GG--FVTYVDFH-PSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNY 243
Query: 1157 IASAALENDKTIKL 1198
+ +A+ +D T+K+
Sbjct: 244 LITAS--SDSTLKI 255
Score = 137 bits (344), Expect = 3e-32
Identities = 88/291 (30%), Positives = 144/291 (49%)
Frame = +2
Query: 338 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 517
GH AV+ V FS N + LAS S D + IW +GHK ++ V +S +LL
Sbjct: 17 GHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLL 76
Query: 518 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 697
S S DKT++IW + + H+ V +F +V+ S D++V++W +
Sbjct: 77 ASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQR 136
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 877
L +L H + V F+ DG LIVS+S D ++WD S +C+ + + V++V F
Sbjct: 137 FLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGG-FVTYVDF 195
Query: 878 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 1057
P+G I AA +DNT+K+WD + L+ Y H + + S G ++++ S D+
Sbjct: 196 HPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPS---GNYLITASSDST 252
Query: 1058 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+ I +L ++ L GH + A T AS +D+ + +WKS+
Sbjct: 253 LKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGG--SDEQVMVWKSN 301
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 146 bits (368), Expect = 5e-35
Identities = 86/292 (29%), Positives = 147/292 (50%)
Frame = +2
Query: 326 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
+T + +++V + + +A AD +++W K + V +SD
Sbjct: 465 YTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKK-----------LRSVKQASD 513
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
+L+ SDD +I D + LK L GHS V+ +F+P N ++S S D +VR+W +
Sbjct: 514 LSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSL 573
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
+T CL H+ PV F+ G VS +D + R+W T Q L+ + V+
Sbjct: 574 QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLR-IFAGHLADVN 632
Query: 866 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 1045
+F PN Y+ + D T++LWD G C++ +TGHK + + FS G+++ +G+
Sbjct: 633 CTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSL--TFS-PNGRFLATGA 689
Query: 1046 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
D V +W++ +V +L+GHTD V S I+AS +++N T++LW
Sbjct: 690 TDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDN--TVRLW 739
Score = 122 bits (305), Expect = 1e-27
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 6/223 (2%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH+ V FSP+ +L SSS D +++W GH + D +S
Sbjct: 540 LYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGY 599
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
VS D+ ++W + L+ GH V C F+P SN + +GS D +VR+WDV
Sbjct: 600 YFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLN 659
Query: 692 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 871
G C++ H P+ ++ F+ +G + + + DG +WD G + L V +
Sbjct: 660 GNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGEL-KGHTDTVCSL 718
Query: 872 KFSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKN 982
+FS +G+ + + ++DNT++LWD K T TGH N
Sbjct: 719 RFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHIN 761
Score = 115 bits (289), Expect = 7e-26
Identities = 68/242 (28%), Positives = 115/242 (47%)
Frame = +2
Query: 347 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 526
K + SVK + + + S D L +I K + GH + ++S D N L+S+
Sbjct: 503 KKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSS 562
Query: 527 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 706
S+D T+++W + + CL KGH+ V+ F+P VSG D R+W + L+
Sbjct: 563 SEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLR 622
Query: 707 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 886
H V+ F+ + + + + S D R+WD +G C++ + P+ + FSPN
Sbjct: 623 IFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVR-IFTGHKGPIHSLTFSPN 681
Query: 887 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 1066
G+++ D + LWD G + GH + + FS G+ + SGS DN V +
Sbjct: 682 GRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSL--RFS-RDGEILASGSMDNTVRL 738
Query: 1067 WN 1072
W+
Sbjct: 739 WD 740
Score = 109 bits (273), Expect = 5e-24
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Frame = +2
Query: 338 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 517
GH V +FSP G + S D++ ++W + + +GH ++ + +SN +
Sbjct: 584 GHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYV 643
Query: 518 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 697
+ S D+T+++WDV +G C++ GH + F+P + +G+ D V +WD+ G
Sbjct: 644 ATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGL 703
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVK 874
+ L H+D V ++ F+RDG ++ S S D R+WD + L+T DD +
Sbjct: 704 MVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLET--DDFTTATGHIN 761
Query: 875 FSPNGKYILAAT 910
N + +L T
Sbjct: 762 LPENSQELLLGT 773
Score = 89.7 bits (221), Expect = 5e-18
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 24/174 (13%)
Frame = +2
Query: 335 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 514
AGH V+ +F PN ++A+ SAD+ +++W +G + +GHK I + +S +
Sbjct: 625 AGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRF 684
Query: 515 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VKT 691
L + + D + +WD+ G + LKGH++ V F+ ++ SGS D +VR+WD VK
Sbjct: 685 LATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKA 744
Query: 692 GKCLKT-----------LPAHSD------------PVSAVHFNRDGSLIVSSSY 784
+ L+T LP +S PV +HF R ++ + +Y
Sbjct: 745 FEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAY 798
Score = 68.2 bits (165), Expect = 2e-11
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 30/198 (15%)
Frame = +2
Query: 698 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-------------------DTASG 820
C T ++AV D SLI D R+W D S
Sbjct: 463 CFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESD 522
Query: 821 QCLKTLIDD-----------DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 967
L+ ++D+ + PV FSP+ Y+L+++ D T++LW CL Y
Sbjct: 523 DVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGY 582
Query: 968 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 1147
GH Y ++ G + VSG D + +W + ++ GH V T HP
Sbjct: 583 KGH---NYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPN 639
Query: 1148 ENIIASAALENDKTIKLW 1201
N +A+ + D+T++LW
Sbjct: 640 SNYVATGSA--DRTVRLW 655
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,124,991
Number of extensions: 1035014
Number of successful extensions: 7971
Number of sequences better than 1.0e-05: 211
Number of HSP's gapped: 5616
Number of HSP's successfully gapped: 630
Length of query: 504
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 398
Effective length of database: 12,433,743
Effective search space: 4948629714
Effective search space used: 4948629714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013053
(1514 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 632 0.0
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 632 0.0
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 568 e-162
Alignment gi|NP_000421.1| platelet-activating factor acetylhydrolase IB s... 187 3e-47
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 186 4e-47
Alignment gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform... 169 5e-42
Alignment gi|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 ... 169 5e-42
Alignment gi|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 ... 169 5e-42
Alignment gi|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa prote... 169 5e-42
Alignment gi|NP_001093207.1| WD repeat domain-containing protein 83 [Homo... 154 3e-37
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 632 bits (1629), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Frame = +2
Query: 302 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 481
VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 482 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 661
SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 662 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 842 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 1021
DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 1202 KSDC 1213
KSDC
Sbjct: 331 KSDC 334
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 632 bits (1629), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Frame = +2
Query: 302 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 481
VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 482 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 661
SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 662 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 842 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 1021
DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Query: 1202 KSDC 1213
KSDC
Sbjct: 331 KSDC 334
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 568 bits (1465), Expect = e-162
Identities = 269/301 (89%), Positives = 284/301 (94%)
Frame = +2
Query: 308 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 487
PNYALK TL GHT+AVSSVKFSPNGEWLASSSAD+LI IWGAYDGK+EKT+ GH L ISD
Sbjct: 29 PNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISD 88
Query: 488 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 667
VAWSSDS+ LVSASDDKTLK+WDV SGKCLKTLKGHSNYVFCCNFNP SNLI+SGSFDE+
Sbjct: 89 VAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDET 148
Query: 668 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 847
V+IW+VKTGKCLKTL AHSDPVSAVHFN GSLIVS SYDGLCRIWD ASGQCLKTL+DD
Sbjct: 149 VKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDD 208
Query: 848 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 1027
DNPPVSFVKFSPNGKYIL ATLDNTLKLWDYS+G+CLKTYTGHKNEKYCIFANFSVTGGK
Sbjct: 209 DNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGK 268
Query: 1028 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 1207
WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS ACHPTEN+IASAALENDKTIKLW S
Sbjct: 269 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKLWMS 328
Query: 1208 D 1210
+
Sbjct: 329 N 329
Score = 121 bits (303), Expect = 2e-27
Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 1/233 (0%)
Frame = +2
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
+ L +S+S +++ ++ + + TL GH+ V F+P + S S D + IW
Sbjct: 11 AQLALSSSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGA 70
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
GK KTL H+ +S V ++ D S +VS+S D ++WD SG+CLKTL N V
Sbjct: 71 YDGKYEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSN-YVF 129
Query: 866 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 1045
F+P I++ + D T+K+W+ GKCLKT + H + + N S G IVSGS
Sbjct: 130 CCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCS---GSLIVSGS 186
Query: 1046 EDNLVYIWNLQTKEIVQKLQGHTDVVIS-TACHPTENIIASAALENDKTIKLW 1201
D L IW+ + + ++ L + +S P I +A L+N T+KLW
Sbjct: 187 YDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDN--TLKLW 237
>ref|NP_000421.1| platelet-activating factor acetylhydrolase IB subunit alpha [Homo
sapiens].
Length = 410
Score = 187 bits (474), Expect = 3e-47
Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 19/313 (6%)
Frame = +2
Query: 323 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 502
K+ L+GH V+ V F P + S+S D IK+W G FE+T+ GH + D+++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 503 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 682
LL S S D T+K+WD +C++T+ GH + V P + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 683 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--- 853
V+TG C+KT H + V V N+DG+LI S S D R+W A+ +C L + ++
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280
Query: 854 -----PPVSFVKFS-----------PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 985
P S+ S G ++L+ + D T+K+WD S G CL T GH N
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 986 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 1165
+ + +GGK+I+S ++D + +W+ + K ++ L H V S H T + +
Sbjct: 341 VRGVLFH---SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 1166 AALENDKTIKLWK 1204
++ D+T+K+W+
Sbjct: 398 GSV--DQTVKVWE 408
Score = 84.7 bits (208), Expect = 2e-16
Identities = 36/103 (34%), Positives = 62/103 (60%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 559
G +L S S DK IK+W G T+ GH + V + S ++S +DDKTL++WD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 560 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ +C+KTL H ++V +F+ + +V+GS D++V++W+ +
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 186 bits (473), Expect = 4e-47
Identities = 100/293 (34%), Positives = 161/293 (54%), Gaps = 1/293 (0%)
Frame = +2
Query: 329 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
TL GH V ++ F+ P G+ +A+ S DK K+W GK T GH I ++++
Sbjct: 129 TLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ 188
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
S L+ + S D T K+WD+ +G+ + TL+GHS + +FN + I++GSFD +V +WD
Sbjct: 189 STLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDA 248
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
TG+ + L H +S+ FN D SLI++ S D C++WD +G+C+ TL D+ +
Sbjct: 249 DTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILD 308
Query: 866 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 1045
F GK I A+ D T +++ + KC+ GH+ E I N G +++GS
Sbjct: 309 SC-FDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFN---PQGNHLLTGS 364
Query: 1046 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 1204
D IW+ QT + +Q L+GHTD + S A + NI+ + + D T ++W+
Sbjct: 365 SDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGS--KDNTCRIWR 415
Score = 175 bits (443), Expect = 1e-43
Identities = 91/291 (31%), Positives = 161/291 (55%), Gaps = 1/291 (0%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-S 508
L H +++V + +G + S D+ K+W G+ T+ GH+ + +A+++
Sbjct: 88 LKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYG 147
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 688
+ + + S DKT K+W V +GKC T +GH+ + C +FNPQS L+ +GS D + ++WD++
Sbjct: 148 DKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQ 207
Query: 689 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 868
G+ + TL HS + ++ FN G I++ S+D +WD +G+ + LI +S
Sbjct: 208 NGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILI-GHCAEISS 266
Query: 869 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 1048
F+ + IL ++D T KLWD + GKC+ T TGH +E + + F T GK I + S
Sbjct: 267 ASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDE--ILDSCFDYT-GKLIATASA 323
Query: 1049 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 1201
D I++ T++ + KL+GH + + +P N + + + +DKT ++W
Sbjct: 324 DGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGS--SDKTARIW 372
Score = 136 bits (342), Expect = 6e-32
Identities = 65/203 (32%), Positives = 112/203 (55%)
Frame = +2
Query: 326 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 505
+TL GH+ + S+ F+ +G+ + + S D + +W A G+ + GH IS +++ D
Sbjct: 213 YTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWD 272
Query: 506 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 685
+L+++ S DKT K+WD ++GKC+ TL GH + + F+ LI + S D + RI+
Sbjct: 273 CSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSA 332
Query: 686 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 865
T KC+ L H +S + FN G+ +++ S D RIWD +GQCL+ L + +
Sbjct: 333 ATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVL-EGHTDEIF 391
Query: 866 FVKFSPNGKYILAATLDNTLKLW 934
F+ G ++ + DNT ++W
Sbjct: 392 SCAFNYKGNIVITGSKDNTCRIW 414
Score = 105 bits (262), Expect = 1e-22
Identities = 58/169 (34%), Positives = 88/169 (52%)
Frame = +2
Query: 704 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 883
K L AH P++ V N+ GS ++ SYD C++WDTASG+ L TL N + +P
Sbjct: 86 KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNP 145
Query: 884 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 1063
G I + D T KLW GKC T+ GH E C+ N T + +GS D
Sbjct: 146 YGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQST---LVATGSMDTTAK 202
Query: 1064 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
+W++Q E V L+GH+ +IS + + + + I + + D T+ +W +D
Sbjct: 203 LWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSF--DHTVVVWDAD 249
>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
Length = 589
Score = 169 bits (429), Expect = 5e-42
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 328
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 329 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 386
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 387 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 441
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 442 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 491
Query: 1079 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 492 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 531
Score = 143 bits (360), Expect = 5e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 247 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 305
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 306 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 361
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 362 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 418
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 419 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 471
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 472 KDNILVSG--NADSTVKIW 488
Score = 107 bits (267), Expect = 3e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 379 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 434
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 435 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 492
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 493 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 543
>ref|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 [Homo sapiens].
Length = 707
Score = 169 bits (429), Expect = 5e-42
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 391 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 446
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 447 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 504
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 505 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 559
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 560 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 609
Query: 1079 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 610 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 649
Score = 143 bits (360), Expect = 5e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 365 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 423
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 424 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 479
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 480 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 536
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 537 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 589
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 590 KDNILVSG--NADSTVKIW 606
Score = 107 bits (267), Expect = 3e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 497 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 552
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 553 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 610
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 611 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 661
>ref|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 [Homo sapiens].
Length = 627
Score = 169 bits (429), Expect = 5e-42
Identities = 98/284 (34%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Frame = +2
Query: 380 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLKIW 553
G + S S D +K+W A GK +T+ GH G+ WSS N+++S S D+TLK+W
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVW 366
Query: 554 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 733
+ +G+C+ TL GH++ V C + + + +VSGS D ++R+WD++TG+CL L H V
Sbjct: 367 NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAV 424
Query: 734 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 913
V + DG +VS +YD + ++WD + CL TL N S ++F +G ++++ +L
Sbjct: 425 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQF--DGIHVVSGSL 479
Query: 914 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG-----KWIVSGSEDNLVYIWNLQ 1078
D ++++WD G C+ T TGH+ S+T G +VSG+ D+ V IW+++
Sbjct: 480 DTSIRVWDVETGNCIHTLTGHQ----------SLTSGMELKDNILVSGNADSTVKIWDIK 529
Query: 1079 TKEIVQKLQG---HTDVVISTACHPTENIIASAALENDKTIKLW 1201
T + +Q LQG H V T +N + +++ +D T+KLW
Sbjct: 530 TGQCLQTLQGPNKHQSAV--TCLQFNKNFVITSS--DDGTVKLW 569
Score = 143 bits (360), Expect = 5e-34
Identities = 83/259 (32%), Positives = 135/259 (52%)
Frame = +2
Query: 425 WGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 604
W + K K + GH + N +VS SDD TLK+W +GKCL+TL GH+
Sbjct: 285 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 343
Query: 605 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 784
V+ + N+I+SGS D ++++W+ +TG+C+ TL H+ V +H + +VS S
Sbjct: 344 VWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSR 399
Query: 785 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 964
D R+WD +GQCL L+ V V++ +G+ +++ D +K+WD CL T
Sbjct: 400 DATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 456
Query: 965 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 1144
GH N Y + + G +VSGS D + +W+++T + L GH +++
Sbjct: 457 LQGHTNRVYSLQFD-----GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL 509
Query: 1145 TENIIASAALENDKTIKLW 1201
+NI+ S D T+K+W
Sbjct: 510 KDNILVSG--NADSTVKIW 526
Score = 107 bits (267), Expect = 3e-23
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 511
L GH AV V++ +G + S + D ++K+W T+ GH + + + D
Sbjct: 417 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI 472
Query: 512 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 691
+VS S D ++++WDV +G C+ TL GH + + N++VSG+ D +V+IWD+KT
Sbjct: 473 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKT 530
Query: 692 GKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 841
G+CL+TL H V+ + FN+ + +++SS DG ++WD +G+ ++ L+
Sbjct: 531 GQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLV 581
>ref|NP_004805.2| U5 small nuclear ribonucleoprotein 40 kDa protein [Homo sapiens].
Length = 357
Score = 169 bits (429), Expect = 5e-42
Identities = 100/290 (34%), Positives = 160/290 (55%), Gaps = 10/290 (3%)
Frame = +2
Query: 332 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 508
L+GH V KF PNG LAS+ D+LI +W Y D T+ GH + ++ +++D
Sbjct: 62 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDG 121
Query: 509 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC---NFNPQSNLIVSGSFDESVRIW 679
++L SAS DKT+ +WD +G+ +K LKGH+++V C PQ L+ +GS D +V++W
Sbjct: 122 SMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQ--LVCTGSDDGTVKLW 179
Query: 680 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 859
D++ ++T ++ V AV FN I+S D ++WD + T+ +
Sbjct: 180 DIRKKAAIQTFQ-NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADS- 237
Query: 860 VSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTG--HKNEKYCIFANFSVTG 1021
V+ + S G Y+L+ +DNT+++WD K +C+K + G H EK + ++S G
Sbjct: 238 VTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDG 297
Query: 1022 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 1171
K I +GS D VY+W+ ++ I+ KL GH + A HP E II SA+
Sbjct: 298 SK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISAS 346
Score = 109 bits (273), Expect = 6e-24
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 2/208 (0%)
Frame = +2
Query: 584 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRD 757
L GH V+CC F+P + + S FD + +W+V G C TL HS V +H+N D
Sbjct: 62 LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVY-GDCDNYATLKGHSGAVMELHYNTD 120
Query: 758 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 937
GS++ S+S D +WD+ +G+ +K L + S + + + D T+KLWD
Sbjct: 121 GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD 180
Query: 938 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 1117
K ++T+ +N + F+ T + I+SG DN + +W+L+ ++ ++GH D
Sbjct: 181 IRKKAAIQTF---QNTYQVLAVTFNDTSDQ-IISGGIDNDIKVWDLRQNKLTYTMRGHAD 236
Query: 1118 VVISTACHPTENIIASAALENDKTIKLW 1201
V + + + S A++N T+++W
Sbjct: 237 SVTGLSLSSEGSYLLSNAMDN--TVRVW 262
>ref|NP_001093207.1| WD repeat domain-containing protein 83 [Homo sapiens].
Length = 315
Score = 154 bits (388), Expect = 3e-37
Identities = 94/289 (32%), Positives = 155/289 (53%), Gaps = 2/289 (0%)
Frame = +2
Query: 350 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 529
AV +V+F+ +G + + +DK +K+W G +T SGH + D A S D++ L S
Sbjct: 27 AVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGG 86
Query: 530 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CL 703
DK + +WDV+SG+ ++ +GH+ V FN ++ +I+SGS D S+R WD ++ + +
Sbjct: 87 GDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRRPEPV 146
Query: 704 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 883
+TL D VS+V + I++ S DG R +D GQ + P++ FS
Sbjct: 147 QTLDEARDGVSSVKVS--DHEILAGSVDGRVRRYDLRMGQLFSDYV---GSPITCTCFSR 201
Query: 884 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 1063
+G+ L ++LD+TL+L D G+ L Y GHKN++Y + S +VS SED V+
Sbjct: 202 DGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLS-ERDTHVVSCSEDGKVF 260
Query: 1064 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 1210
W+L + L + VV S A HPTE + +A +++ W+ +
Sbjct: 261 FWDLVEGALALALPVGSGVVQSLAYHPTEPCLLTAM---GGSVQCWREE 306
Score = 55.8 bits (133), Expect = 1e-07
Identities = 34/123 (27%), Positives = 58/123 (47%)
Frame = +2
Query: 569 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 748
K LKTL V FN N ++ D+++++W+ G L+T H V
Sbjct: 16 KRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAG 75
Query: 749 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 928
+ D S + S D +WD ASGQ ++ V+ V+F+ IL+ ++D++++
Sbjct: 76 SFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAG-KVNTVQFNEEATVILSGSIDSSIR 134
Query: 929 LWD 937
WD
Sbjct: 135 CWD 137
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,881,355
Number of extensions: 1240859
Number of successful extensions: 9874
Number of sequences better than 1.0e-05: 264
Number of HSP's gapped: 6911
Number of HSP's successfully gapped: 791
Length of query: 504
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,770,016
Effective search space: 5863696352
Effective search space used: 5863696352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013053
(1514 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 694 0.0
Sscrofa_Chr13 103 3e-19
>Sscrofa_Chr01
|| Length = 315321322
Score = 694 bits (350), Expect = 0.0
Identities = 373/378 (98%), Gaps = 2/378 (0%)
Strand = Plus / Plus
Query: 1115 gacgtggtcatctcgacggcctgccaccccacagagaacatcatcgcctcggccgcgctg 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307549128 gacgtggtcatctcgacggcctgccaccccacagagaacatcatcgcctcggccgcgctg 307549187
Query: 1175 gagaacgacaagaccatcaagctctggaagagcgactgctaggcccgcgggcgcggggct 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307549188 gagaacgacaagaccatcaagctctggaagagcgactgctaggcccgcgggcgcggggct 307549247
Query: 1235 gtcgggacgcccagccgggctggcgagagctcggtgctcgaggggctccctggtccaggc 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307549248 gtcgggacgcccagccgggctggcgagagctcggtgctcgaggggctccctggtccaggc 307549307
Query: 1295 ctggggactggaggcgcctgggcctgcgccgcctccgaggacggcttggccgagggccgt 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307549308 ctggggactggaggcgcctgggcctgcgccgcctccgaggacggcttggccgagggccgt 307549367
Query: 1355 gtcccccgcagaggttctcggagctgccggtggcgattcttgccaatgcctgtcttgttg 1414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307549368 gtcctccgcagaggttctcggagctgccggtggcgattcttgccaatgcctgtcttgttg 307549427
Query: 1415 gctggggaag-gttagagtctgtattgtgtttcgaggccacagaaatttctaa-ttttta 1472
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 307549428 gctggggaagagttagagtctgtattgtgttcggaggccacagaaatttctaatttttta 307549487
Query: 1473 ttacaaaaggtgaagttc 1490
||||||||||||||||||
Sbjct: 307549488 ttacaaaaggtgaagttc 307549505
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 118 gcaggtttgcattagctgacggcgctccccacctgcggcttctgcctggagctgtgagct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307535994 gcaggtttgcattagctgacggcgctccccacctgcggcttctgcctggagctgtgagct 307536053
Query: 178 ccccgctgtcccccgcccggtgggcttcagagccatggcaaccgaggagaagaagccgga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307536054 ccccgctgtcccccgcccggtgggcttcagagccatggcaaccgaggagaagaagccgga 307536113
Query: 238 gaccgaggccgccagagcgcagcccgccccgtcggcggcagccacgcagagcaag 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307536114 gaccgaggccgccagagcgcagcccgccccgtcggcggcagccacgcagagcaag 307536168
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 5 cgcgcacgcgcattgccgctcgccgcgccgcctagtcgagctcggcccggctcccgccca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307533237 cgcgcacgcgcattgccgctcgccgcgccgcctagtcgagctcggcccggctcccgccca 307533296
Query: 65 ggcggcggcagacgcgacgcccggagcgcccgtcctcagcccctcgccgcccggcaggt 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307533297 ggcggcggcagacgcgacgcccggagcgcccgtcctcagcccctcgccgcccggcaggt 307533355
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 291 agcccacacctgttaaacccaactacgcgctgaagttcaccctggccggccacacgaaag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307536774 agcccacacctgttaaacccaactacgcgctgaagttcaccctggccggccacacgaaag 307536833
Query: 351 ctgtgtcctcggtgaagttcagcccgaacggggagtggctggcgagttcgt 401
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307536834 ctgtgtcctcggtgaagttcagcccgaacggggagtggctggcgagttcgt 307536884
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 475 gggaatatcagacgtggcctggtcgtcagactctaaccttctcgtttctgcctcagatga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307537368 gggaatatcagacgtggcctggtcgtcagactctaaccttctcgtttctgcctcagatga 307537427
Query: 535 caagaccctaaagatatgggacgtgagctcgg 566
||||||||||||||||||||||||||||||||
Sbjct: 307537428 caagaccctaaagatatgggacgtgagctcgg 307537459
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 565 ggggaagtgtctgaagaccctcaagggacacagtaattacgtcttctgctgtaacttcaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307537583 ggggaagtgtctgaagaccctcaagggacacagtaattacgtcttctgctgtaacttcaa 307537642
Query: 625 cccccagtccaacctcatcgtctcgggctcc 655
|||||||||||||||||||||||||||||||
Sbjct: 307537643 cccccagtccaacctcatcgtctcgggctcc 307537673
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1026 agtggatcgtgtcgggctcggaggacaacttggtttacatctggaacctgcagacgaaag 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307547933 agtggatcgtgtcgggctcggaggacaacttggtttacatctggaacctgcagacgaaag 307547992
Query: 1086 agattgtgcagaagctgcagggccacacgg 1115
||||||||||||||||||||||||||||||
Sbjct: 307547993 agattgtgcagaagctgcagggccacacgg 307548022
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 656 ttcgacgagagcgtgaggatttgggacgtgaagacagggaagtgcctcaagacgctgccc 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307537784 ttcgacgagagcgtgaggatttgggacgtgaagacagggaagtgcctcaagacgctgccc 307537843
Query: 716 gcgcactcggatcccgtctcagccgt 741
||||||||||||||||||||||||||
Sbjct: 307537844 gcgcactcggatcccgtctcagccgt 307537869
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 842 gatgacgacaacccgcccgtgtccttcgtgaagttctctccgaacggcaagtacatcctg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307546516 gatgacgacaacccgcccgtgtccttcgtgaagttctctccgaacggcaagtacatcctg 307546575
Query: 902 gccgcgaccttggacaa 918
|||||||||||||||||
Sbjct: 307546576 gccgcgaccttggacaa 307546592
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 951 agtgtctgaagacgtacaccggccacaagaatgagaagtactgcatattcgcgaatttct 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307547465 agtgtctgaagacgtacaccggccacaagaatgagaagtactgcatattcgcgaatttct 307547524
Query: 1011 ctgtcactggcgggaag 1027
|||||||||||||||||
Sbjct: 307547525 ctgtcactggcgggaag 307547541
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 402 ctgcagataaactcattaagatttggggagcttacgacggaaaatttgagaaaaccatat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307536982 ctgcagataaactcattaagatttggggagcttacgacggaaaatttgagaaaaccatat 307537041
Query: 462 ctggtcacaagctgg 476
|||||||||||||||
Sbjct: 307537042 ctggtcacaagctgg 307537056
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 740 gttcactttaaccgggacggctccctgatcgtgtcgagcagctacgacggcctctg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307541441 gttcactttaaccgggacggctccctgatcgtgtcgagcagctacgacggcctctg 307541496
Score = 95.6 bits (48), Expect = 7e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 795 gccggatctgggacaccgcctcgggccagtgcctgaagacgctgatcg 842
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307544446 gccggatctgggacaccgcctcgggccagtgcctgaagacgctgatcg 307544493
Score = 67.9 bits (34), Expect = 2e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 919 cacgctgaagctctgggactacagcaaagggaag 952
||||||||||||||||||||||||||||||||||
Sbjct: 307547264 cacgctgaagctctgggactacagcaaagggaag 307547297
>Sscrofa_Chr13
|| Length = 218635234
Score = 103 bits (52), Expect = 3e-19
Identities = 154/188 (81%)
Strand = Plus / Plus
Query: 911 ttggacaacacgctgaagctctgggactacagcaaagggaagtgtctgaagacgtacacc 970
|||||||| || || || || ||||| ||||||| ||| | || |||||||| |||||
Sbjct: 147722061 ttggacaatactcttaaactgtgggattacagcagaggcagatgcctgaagacatacact 147722120
Query: 971 ggccacaagaatgagaagtactgcatattcgcgaatttctctgtcactggcgggaagtgg 1030
|| || ||||||||||| ||||||||||| || ||||| || |||||| | || ||||||
Sbjct: 147722121 ggtcataagaatgagaaatactgcatatttgccaatttttcagtcactagtggaaagtgg 147722180
Query: 1031 atcgtgtcgggctcggaggacaacttggtttacatctggaacctgcagacgaaagagatt 1090
|| ||||| || || || || ||| |||||||||| |||||||| ||||| |||||||||
Sbjct: 147722181 attgtgtctggttcagaagataacctggtttacatttggaaccttcagactaaagagatt 147722240
Query: 1091 gtgcagaa 1098
|| |||||
Sbjct: 147722241 gtacagaa 147722248
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,909,552
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 15
Length of query: 1514
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1493
Effective length of database: 2,808,413,156
Effective search space: 4192960841908
Effective search space used: 4192960841908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)