Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013055
(973 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541633.1| PREDICTED: similar to nuclear factor of kappa l... 432 e-121
Alignment gi|XP_537413.2| PREDICTED: similar to nuclear factor of kappa l... 100 4e-21
Alignment gi|XP_855175.1| PREDICTED: similar to B-cell lymphoma 3-encoded... 87 2e-17
Alignment gi|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Cani... 80 3e-15
Alignment gi|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B... 80 3e-15
Alignment gi|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 80 3e-15
Alignment gi|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 80 3e-15
Alignment gi|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 80 3e-15
Alignment gi|XP_852039.1| PREDICTED: similar to nuclear factor of kappa l... 72 6e-13
Alignment gi|XP_546521.2| PREDICTED: similar to ankyrin repeat and kinase... 64 2e-10
>ref|XP_541633.1| PREDICTED: similar to nuclear factor of kappa light polypeptide
gene enhancer in B-cells inhibitor, beta isoform a
[Canis familiaris].
Length = 357
Score = 432 bits (1111), Expect = e-121
Identities = 224/299 (74%), Positives = 228/299 (76%), Gaps = 1/299 (0%)
Frame = +2
Query: 77 MAGVACLGKAADTDEWCDXXXXXXXXXXXXXXXXXXXXXXXXXXXWAPLVFGYVTEDGDT 256
MAGVACLGKAA+ DEWCD WAPLVFGYVTEDGDT
Sbjct: 1 MAGVACLGKAAEADEWCDSGLGSLGPDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDT 60
Query: 257 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 436
ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEAS VEKLYAAGA L
Sbjct: 61 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASAVEKLYAAGAGL 120
Query: 437 LVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 616
+AERGGHTAL LQPRPR RGAPNTYLAQG D T DTDH PVA Y
Sbjct: 121 HIAERGGHTALHLACRMRAHACARVLLQPRPRCSRGAPNTYLAQGPDRTSDTDHPPVASY 180
Query: 617 PXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 796
P WKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC
Sbjct: 181 PEPDLEKEDEENEEDWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 240
Query: 797 GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLAR-LSVHTAP 970
GRSPLHLAVEAQAADVLELLL+AGADPAARMYGGRTPLGSATLRPNP+LAR L H AP
Sbjct: 241 GRSPLHLAVEAQAADVLELLLRAGADPAARMYGGRTPLGSATLRPNPILARLLRAHGAP 299
>ref|XP_537413.2| PREDICTED: similar to nuclear factor of kappa light polypeptide
gene enhancer in B-cells inhibitor, alpha [Canis
familiaris].
Length = 515
Score = 99.8 bits (247), Expect = 4e-21
Identities = 77/234 (32%), Positives = 103/234 (44%), Gaps = 1/234 (0%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPF-LDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
+TEDGD+ LHLA+IH+ + ++ + +L+ QN+L QT LHLA I + E
Sbjct: 271 LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 330
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AG + + G+T L Q T T
Sbjct: 331 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ--------------------TCRT 370
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
H LY L+A NY GHT LH+A IH +V LL GAD
Sbjct: 371 QH----LYSI-----------------LQATNYNGHTCLHLASIHGYLGIVELLVSLGAD 409
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPN 934
+N EP GR+ LHLAV+ Q +D++ LLLK GAD Y G +P RP+
Sbjct: 410 VNAQEPCNGRTALHLAVDLQNSDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 463
Score = 51.6 bits (122), Expect = 1e-06
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Frame = +2
Query: 662 WKLQLEAENYEGHTPLHVAVIHKDA----EMVRLLREAGADLNKPEPTCGRSPLHLAVEA 829
WK QL + G + LH+A+IH++ E+VR ++ A LN + ++PLHLAV
Sbjct: 267 WKQQLTED---GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNF-QNNLQQTPLHLAVIT 322
Query: 830 QAADVLELLLKAGADPAARMYGGRTPL 910
++ E LL+AG DP R + G TPL
Sbjct: 323 NQPEIAEALLEAGCDPELRDFRGNTPL 349
>ref|XP_855175.1| PREDICTED: similar to B-cell lymphoma 3-encoded protein (Bcl-3
protein) [Canis familiaris].
Length = 509
Score = 87.4 bits (215), Expect = 2e-17
Identities = 72/216 (33%), Positives = 93/216 (43%), Gaps = 1/216 (0%)
Frame = +2
Query: 233 YVTEDGDTALHLAVIHQHEPFLDFLLG-FAAGTEYLDLQNDLGQTALHLAAILGEASTVE 409
+ EDGDT LH+AV+ + P + L+ F G LD+ N+L QT LHLA I S V
Sbjct: 193 HADEDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSMVR 252
Query: 410 KLYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPD 589
L AGAS + +R G TA L AP T
Sbjct: 253 LLVMAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS------AAPGT----------- 295
Query: 590 TDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGA 769
+ LEA NY+G T LHVAV + E V LL E GA
Sbjct: 296 --------------------------VDLEARNYDGLTALHVAVNMQCPEAVLLLLERGA 329
Query: 770 DLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADP 877
D++ + GRSPL AVE + +++LLL+ G P
Sbjct: 330 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQVGRRP 365
>ref|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Canis lupus familiaris].
Length = 972
Score = 80.1 bits (196), Expect = 3e-15
Identities = 71/240 (29%), Positives = 101/240 (42%), Gaps = 4/240 (1%)
Frame = +2
Query: 245 DGDTALHLAVIHQHEPFLDFLLGFAAGT---EYLDLQNDLGQTALHLAAILGEASTVEKL 415
+GD+ LHLA+IH H + LL +G + ++++NDL QT LHLA I + + V+ L
Sbjct: 539 NGDSVLHLAIIHLHAQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEAVVDDL 598
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTD 595
AGA L + +R G++ L L+
Sbjct: 599 LRAGADLSLLDRLGNSVLHLAAKEGQDKILSILLK------------------------- 633
Query: 596 HTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADL 775
H AL ++ N EG +H+AV+ + LL AGAD+
Sbjct: 634 HKKAALL-------------------MDHPNGEGLNAIHIAVMSNSMPCLLLLVAAGADV 674
Query: 776 NKPEPTCGRSPLHLAVEAQAADVLE-LLLKAGADPAARMYGGRTPLGSATLRPNPVLARL 952
N E GR+ LHLAVE + LLL+ A + Y G TPL A R + LA L
Sbjct: 675 NAQERKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAAL 734
>ref|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 1 [Canis familiaris].
Length = 899
Score = 80.1 bits (196), Expect = 3e-15
Identities = 72/244 (29%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYL---DLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ + +L +L N L QT LHLA I G+ S V
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R AP+ L G
Sbjct: 546 LLQVGADPALLDRHGDSAVHLAL----------------RAGTSAPDLLRALLRSGVPTM 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL ++
Sbjct: 590 PQLLHMP---------------------------DFEGLYPVHLAVRARSPECLDLLVDS 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 623 GAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGSPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 5 [Canis familiaris].
Length = 889
Score = 80.1 bits (196), Expect = 3e-15
Identities = 72/244 (29%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYL---DLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ + +L +L N L QT LHLA I G+ S V
Sbjct: 476 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 535
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R AP+ L G
Sbjct: 536 LLQVGADPALLDRHGDSAVHLAL----------------RAGTSAPDLLRALLRSGVPTM 579
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL ++
Sbjct: 580 PQLLHMP---------------------------DFEGLYPVHLAVRARSPECLDLLVDS 612
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 613 GAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGSPT 672
Query: 941 LARL 952
L RL
Sbjct: 673 LTRL 676
>ref|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 4 [Canis familiaris].
Length = 904
Score = 80.1 bits (196), Expect = 3e-15
Identities = 72/244 (29%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYL---DLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ + +L +L N L QT LHLA I G+ S V
Sbjct: 491 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 550
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R AP+ L G
Sbjct: 551 LLQVGADPALLDRHGDSAVHLAL----------------RAGTSAPDLLRALLRSGVPTM 594
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL ++
Sbjct: 595 PQLLHMP---------------------------DFEGLYPVHLAVRARSPECLDLLVDS 627
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 628 GAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGSPT 687
Query: 941 LARL 952
L RL
Sbjct: 688 LTRL 691
>ref|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 3 [Canis familiaris].
Length = 899
Score = 80.1 bits (196), Expect = 3e-15
Identities = 72/244 (29%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYL---DLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ + +L +L N L QT LHLA I G+ S V
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R AP+ L G
Sbjct: 546 LLQVGADPALLDRHGDSAVHLAL----------------RAGTSAPDLLRALLRSGVPTM 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL ++
Sbjct: 590 PQLLHMP---------------------------DFEGLYPVHLAVRARSPECLDLLVDS 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 623 GAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGSPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|XP_852039.1| PREDICTED: similar to nuclear factor of kappa light polypeptide
gene enhancer in B-cells inhibitor, epsilon [Canis
familiaris].
Length = 267
Score = 72.4 bits (176), Expect = 6e-13
Identities = 44/108 (40%), Positives = 58/108 (53%)
Frame = +2
Query: 233 YVTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
Y++EDGDT +HLAVIH+ L L E LD+QN+L QTALHLA L + V+
Sbjct: 116 YISEDGDTLVHLAVIHEAPAVLLCCLALLP-QEVLDIQNNLYQTALHLAVHLDQPGAVQA 174
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNT 556
L GAS ++ +R G TAL L+ RP RG P++
Sbjct: 175 LVLKGASRVLQDRHGDTALHVACQRQHLACARCLLEGRPEPGRGPPHS 222
>ref|XP_546521.2| PREDICTED: similar to ankyrin repeat and kinase domain containing 1
[Canis familiaris].
Length = 764
Score = 64.3 bits (155), Expect = 2e-10
Identities = 67/228 (29%), Positives = 90/228 (39%)
Frame = +2
Query: 245 DGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 424
+G T LHLA + E L+ A + + G+T LH+AA G S V+ L
Sbjct: 459 EGWTPLHLAAQNNFENVARLLVSRQADPNVREAE---GKTPLHVAAYFGHISLVKLLTGQ 515
Query: 425 GASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHTP 604
GA L +R T L L+ GA L Q ++P
Sbjct: 516 GAELDAQQRNLRTPLHLAVERGKVRAIQHLLKS------GAAPDVLDQSG-------YSP 562
Query: 605 VALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKP 784
+ L + LE +G TPLH+A E++ LL E+ ADL P
Sbjct: 563 LHL-AAARGKYLICKMLLRYGASLELPTQQGWTPLHLAAYKGHLEIIHLLAESHADLGAP 621
Query: 785 EPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLR 928
+PLHLA V+ LL+ GADP+A G TPL A R
Sbjct: 622 -GGMKWTPLHLAARHGEEVVVLALLQCGADPSAAEQSGWTPLHLAVQR 668
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/87 (37%), Positives = 47/87 (54%)
Frame = +2
Query: 692 EGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGA 871
EG TPLHVA +V+LL GA+L+ + R+PLHLAVE ++ LLK+GA
Sbjct: 492 EGKTPLHVAAYFGHISLVKLLTGQGAELDAQQRNL-RTPLHLAVERGKVRAIQHLLKSGA 550
Query: 872 DPAARMYGGRTPLGSATLRPNPVLARL 952
P G +PL A R ++ ++
Sbjct: 551 APDVLDQSGYSPLHLAAARGKYLICKM 577
Score = 49.3 bits (116), Expect = 6e-06
Identities = 30/73 (41%), Positives = 39/73 (53%)
Frame = +2
Query: 692 EGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGA 871
EG PLH A + D RLL + GA ++ E G +PLHLA + +V LL+ A
Sbjct: 426 EGWAPLHFAAQNGDDRTARLLLDHGAHVDAQEHE-GWTPLHLAAQNNFENVARLLVSRQA 484
Query: 872 DPAARMYGGRTPL 910
DP R G+TPL
Sbjct: 485 DPNVREAEGKTPL 497
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,409,793
Number of extensions: 1047468
Number of successful extensions: 9834
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 8731
Number of HSP's successfully gapped: 95
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013055
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013055
(973 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069340.1| NF-kappa-B inhibitor beta [Bos taurus]. 436 e-122
Alignment gi|NP_001124218.1| NF-kappa-B inhibitor epsilon [Bos taurus]. 118 7e-27
Alignment gi|NP_001039333.1| NF-kappa-B inhibitor alpha [Bos taurus]. 103 2e-22
Alignment gi|NP_001192922.1| B-cell CLL/lymphoma 3 [Bos taurus]. 96 6e-20
Alignment gi|XP_002695135.1| PREDICTED: B-cell CLL/lymphoma 3-like [Bos t... 96 6e-20
Alignment gi|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos ... 83 3e-16
Alignment gi|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos ... 79 5e-15
Alignment gi|XP_002698771.1| PREDICTED: ankyrin 1, erythrocytic [Bos taur... 62 1e-09
Alignment gi|XP_002703365.1| PREDICTED: ankyrin 1, erythrocytic [Bos taur... 62 1e-09
Alignment gi|NP_001095819.1| hypothetical protein LOC788407 [Bos taurus]. 56 5e-08
>ref|NP_001069340.1| NF-kappa-B inhibitor beta [Bos taurus].
Length = 355
Score = 436 bits (1122), Expect = e-122
Identities = 225/299 (75%), Positives = 231/299 (77%), Gaps = 1/299 (0%)
Frame = +2
Query: 77 MAGVACLGKAADTDEWCDXXXXXXXXXXXXXXXXXXXXXXXXXXXWAPLVFGYVTEDGDT 256
MAGVACLGKAAD DEWCD WAPLVFGYVTEDGDT
Sbjct: 1 MAGVACLGKAADADEWCDSGLGSLGPDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDT 60
Query: 257 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 436
ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAIL EAS VEKLYAAG+SL
Sbjct: 61 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILEEASAVEKLYAAGSSL 120
Query: 437 LVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 616
LVAERGGHTAL LQPRP+RPRGAP TYLAQGSDHTPDTDHTP+ALY
Sbjct: 121 LVAERGGHTALHLACRVGAHTCARVLLQPRPQRPRGAPKTYLAQGSDHTPDTDHTPIALY 180
Query: 617 PXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 796
WKLQLEAE+YEGHTPLHVAVIHKDAEMVRLL+EAGADLNKPEPTC
Sbjct: 181 SEPDVEKEEDESEEDWKLQLEAEDYEGHTPLHVAVIHKDAEMVRLLQEAGADLNKPEPTC 240
Query: 797 GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLAR-LSVHTAP 970
GRSPLHLAVEAQAADVLELLLKAGADPA RMYGGRTPLGSA LRPN +LAR L H AP
Sbjct: 241 GRSPLHLAVEAQAADVLELLLKAGADPAVRMYGGRTPLGSAMLRPNAILARLLRAHGAP 299
>ref|NP_001124218.1| NF-kappa-B inhibitor epsilon [Bos taurus].
Length = 362
Score = 118 bits (296), Expect = 7e-27
Identities = 79/232 (34%), Positives = 113/232 (48%)
Frame = +2
Query: 233 YVTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
Y++EDGDT +HLAVIH+ L + L E LD+QN+L QTALHLA L + V
Sbjct: 116 YISEDGDTLIHLAVIHEAPAVLLYCLALLP-QEVLDIQNNLYQTALHLAVHLDQPGAVRA 174
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L GAS ++ +R G TAL L+ +P RG P++
Sbjct: 175 LVLKGASRVLQDRHGDTALHVACQRQHLACARCLLEGQPEPGRGPPHS------------ 222
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
L L+ +N++G LH+A + ++ ++ LL + GAD
Sbjct: 223 -------------------------LDLQLQNWQGLACLHIATLQRNRPLMELLLQNGAD 257
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLR 928
++ E T G++ LHLAVE Q +++ LL+AGA ARM G TPL A R
Sbjct: 258 IDVQEGTSGKTALHLAVETQERGLVQFLLQAGARVDARMLNGCTPLHLAAGR 309
>ref|NP_001039333.1| NF-kappa-B inhibitor alpha [Bos taurus].
Length = 314
Score = 103 bits (257), Expect = 2e-22
Identities = 76/234 (32%), Positives = 102/234 (43%), Gaps = 1/234 (0%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPF-LDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
+TEDGD+ LHLA+IH+ + ++ + +L+ QN+L QT LHLA I + E
Sbjct: 70 LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 129
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AG + + G+T L QPR G+ H
Sbjct: 130 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR--------------GTQHLHSI 175
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
L+A NY GHT LH+A IH +V LL GAD
Sbjct: 176 ---------------------------LQATNYNGHTCLHLASIHGYLGIVELLVSLGAD 208
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPN 934
+N EP GR+ LHLAV+ Q D++ LLLK GAD Y G +P RP+
Sbjct: 209 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 262
Score = 52.4 bits (124), Expect = 6e-07
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +2
Query: 662 WKLQLEAENYEGHTPLHVAVIHKDA----EMVRLLREAGADLNKPEPTCGRSPLHLAVEA 829
WK QL + G + LH+A+IH++ E+VR ++ A LN + ++PLHLAV
Sbjct: 66 WKQQLTED---GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNF-QNNLQQTPLHLAVIT 121
Query: 830 QAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLARLSVHTAP 970
++ E LL+AG DP R + G TPL A LA + V T P
Sbjct: 122 NQPEIAEALLEAGCDPELRDFRGNTPLHLAC--EQGCLASVGVLTQP 166
>ref|NP_001192922.1| B-cell CLL/lymphoma 3 [Bos taurus].
Length = 454
Score = 95.5 bits (236), Expect = 6e-20
Identities = 81/242 (33%), Positives = 108/242 (44%), Gaps = 1/242 (0%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLG-FAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLY 418
EDGDT LH+AV+ + P + L+ F G LD+ N+L QT LHLA I S V L
Sbjct: 133 EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 192
Query: 419 AAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDH 598
AGAS + +R G Q + H
Sbjct: 193 MAGASPMALDRHG------------------------------------QTAAHLACEHR 216
Query: 599 TPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLN 778
+P L + LEA NY+G T LHVAV + E V LL E GAD++
Sbjct: 217 SPACLRALLDSAPGGT-------MDLEARNYDGLTALHVAVNTECQEAVLLLLEHGADID 269
Query: 779 KPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLARLSV 958
+ GRSPL AVE + +++LLL+ GA+ A+MY G + L SA+ R L R V
Sbjct: 270 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 329
Query: 959 HT 964
+
Sbjct: 330 RS 331
>ref|XP_002695135.1| PREDICTED: B-cell CLL/lymphoma 3-like [Bos taurus].
Length = 454
Score = 95.5 bits (236), Expect = 6e-20
Identities = 81/242 (33%), Positives = 108/242 (44%), Gaps = 1/242 (0%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLG-FAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLY 418
EDGDT LH+AV+ + P + L+ F G LD+ N+L QT LHLA I S V L
Sbjct: 133 EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 192
Query: 419 AAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDH 598
AGAS + +R G Q + H
Sbjct: 193 MAGASPMALDRHG------------------------------------QTAAHLACEHR 216
Query: 599 TPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLN 778
+P L + LEA NY+G T LHVAV + E V LL E GAD++
Sbjct: 217 SPACLRALLDSAPGGT-------MDLEARNYDGLTALHVAVNTECQEAVLLLLEHGADID 269
Query: 779 KPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLARLSV 958
+ GRSPL AVE + +++LLL+ GA+ A+MY G + L SA+ R L R V
Sbjct: 270 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 329
Query: 959 HT 964
+
Sbjct: 330 RS 331
>ref|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos taurus].
Length = 969
Score = 83.2 bits (204), Expect = 3e-16
Identities = 74/241 (30%), Positives = 101/241 (41%), Gaps = 4/241 (1%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGT---EYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GD+ LHLA+IH H + LL +G E ++++NDL QT LHLA I + + VE
Sbjct: 538 ENGDSVLHLAIIHLHNQLVRDLLEVTSGLISDEIINMRNDLYQTPLHLAVITRQEAVVED 597
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AGA L + +R G++ L L+ + AQ DH
Sbjct: 598 LLRAGADLSLLDRLGNSVLHLAAKEGHDKILGILLKHKK----------AAQLIDH---- 643
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
N EG +HVA++ + LL AGAD
Sbjct: 644 ------------------------------PNGEGLNAIHVAMMSNSLPCLLLLMAAGAD 673
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLE-LLLKAGADPAARMYGGRTPLGSATLRPNPVLAR 949
+N E GR+ LHLAVE + L L+ A + Y G TPL A R + LA
Sbjct: 674 VNAQERKSGRTALHLAVEHDNVSLAGCLXLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAA 733
Query: 950 L 952
L
Sbjct: 734 L 734
>ref|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos taurus].
Length = 900
Score = 79.3 bits (194), Expect = 5e-15
Identities = 71/244 (29%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLD---FLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ ++ A +++ N L QT LHLA I G+ V
Sbjct: 487 ENGDTPLHLAIIHGQTTVIEQIAHVIYHAPHLGVVNITNHLHQTPLHLAVITGQTKVVSF 546
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R AP+ L G
Sbjct: 547 LLQVGADPALLDRHGDSAVHLAL----------------RAGASAPDMLCALLRSGVPAM 590
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL E+
Sbjct: 591 PQLLHVP---------------------------DFEGLYPVHLAVRARSPECLDLLVES 623
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 624 GAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGSPT 683
Query: 941 LARL 952
L RL
Sbjct: 684 LTRL 687
>ref|XP_002698771.1| PREDICTED: ankyrin 1, erythrocytic [Bos taurus].
Length = 1964
Score = 61.6 bits (148), Expect = 1e-09
Identities = 66/231 (28%), Positives = 89/231 (38%), Gaps = 5/231 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYA 421
+ G T LH+AV H H + LL G+ + N G T LH+AA + L
Sbjct: 567 KSGLTPLHVAVHHNHLDVVRLLLP-RGGSPHSPALN--GYTPLHIAAKQNQLEVARSLLQ 623
Query: 422 AGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTP----- 586
G S G T L L + N L S TP
Sbjct: 624 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-------NGNLGNKSGLTPLHLVA 676
Query: 587 DTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAG 766
H PVA + ++A G+TPLHVA + + ++V+ L +
Sbjct: 677 QEGHIPVA------------DVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHK 724
Query: 767 ADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSA 919
AD+N + G SPLH A + D++ LLLK GA P G TPL A
Sbjct: 725 ADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKHGASPNEVSSNGTTPLAIA 774
Score = 58.9 bits (141), Expect = 6e-09
Identities = 70/247 (28%), Positives = 91/247 (36%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKL 415
VTE G T LH+A H P + LL A ++ N +T LH+AA G + L
Sbjct: 400 VTESGLTPLHVASFMGHLPIVKSLLQREASP---NVSNVKVETPLHMAARAGHTEVAKYL 456
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTP--- 586
A + + T L L+ N LA + HTP
Sbjct: 457 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA-------NPNLATTAGHTPLHI 509
Query: 587 --DTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENY----EGHTPLHVAVIHKDAEMVR 748
H AL L+ EA +G TPLHVA + M
Sbjct: 510 AAREGHVETALA----------------LLEKEASQTCMTKKGFTPLHVAAKYGKVRMAE 553
Query: 749 LLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLR 928
LL E A N + G +PLH+AV DV+ LLL G P + G TPL A +
Sbjct: 554 LLLEHDAHPNAAGKS-GLTPLHVAVHHNHLDVVRLLLPRGGSPHSPALNGYTPLHIAAKQ 612
Query: 929 PNPVLAR 949
+AR
Sbjct: 613 NQLEVAR 619
Score = 51.6 bits (122), Expect = 1e-06
Identities = 67/230 (29%), Positives = 89/230 (38%), Gaps = 2/230 (0%)
Frame = +2
Query: 239 TEDGDTALHLAVIHQH-EPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKL 415
T G T LH+A H E L L A+ T G T LH+AA G+ E L
Sbjct: 500 TTAGHTPLHIAAREGHVETALALLEKEASQT----CMTKKGFTPLHVAAKYGKVRMAELL 555
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTD 595
A A + G T L L PRG GS H+P +
Sbjct: 556 LEHDAHPNAAGKSGLTPLHVAVHHNHLDVVRLLL------PRG--------GSPHSPALN 601
Query: 596 -HTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
+TP+ + + AE+ +G TPLH+A AEMV LL A+
Sbjct: 602 GYTPLHI-AAKQNQLEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 660
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSAT 922
N + G +PLHL + V ++L+K G A G TPL A+
Sbjct: 661 GNLGNKS-GLTPLHLVAQEGHIPVADVLIKHGVTVDATTRMGYTPLHVAS 709
>ref|XP_002703365.1| PREDICTED: ankyrin 1, erythrocytic [Bos taurus].
Length = 1963
Score = 61.6 bits (148), Expect = 1e-09
Identities = 66/231 (28%), Positives = 89/231 (38%), Gaps = 5/231 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYA 421
+ G T LH+AV H H + LL G+ + N G T LH+AA + L
Sbjct: 566 KSGLTPLHVAVHHNHLDVVRLLLP-RGGSPHSPALN--GYTPLHIAAKQNQLEVARSLLQ 622
Query: 422 AGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTP----- 586
G S G T L L + N L S TP
Sbjct: 623 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-------NGNLGNKSGLTPLHLVA 675
Query: 587 DTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAG 766
H PVA + ++A G+TPLHVA + + ++V+ L +
Sbjct: 676 QEGHIPVA------------DVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHK 723
Query: 767 ADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSA 919
AD+N + G SPLH A + D++ LLLK GA P G TPL A
Sbjct: 724 ADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKHGASPNEVSSNGTTPLAIA 773
Score = 58.9 bits (141), Expect = 6e-09
Identities = 70/247 (28%), Positives = 91/247 (36%), Gaps = 9/247 (3%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKL 415
VTE G T LH+A H P + LL A ++ N +T LH+AA G + L
Sbjct: 399 VTESGLTPLHVASFMGHLPIVKSLLQREASP---NVSNVKVETPLHMAARAGHTEVAKYL 455
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTP--- 586
A + + T L L+ N LA + HTP
Sbjct: 456 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA-------NPNLATTAGHTPLHI 508
Query: 587 --DTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENY----EGHTPLHVAVIHKDAEMVR 748
H AL L+ EA +G TPLHVA + M
Sbjct: 509 AAREGHVETALA----------------LLEKEASQTCMTKKGFTPLHVAAKYGKVRMAE 552
Query: 749 LLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLR 928
LL E A N + G +PLH+AV DV+ LLL G P + G TPL A +
Sbjct: 553 LLLEHDAHPNAAGKS-GLTPLHVAVHHNHLDVVRLLLPRGGSPHSPALNGYTPLHIAAKQ 611
Query: 929 PNPVLAR 949
+AR
Sbjct: 612 NQLEVAR 618
Score = 51.6 bits (122), Expect = 1e-06
Identities = 67/230 (29%), Positives = 89/230 (38%), Gaps = 2/230 (0%)
Frame = +2
Query: 239 TEDGDTALHLAVIHQH-EPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKL 415
T G T LH+A H E L L A+ T G T LH+AA G+ E L
Sbjct: 499 TTAGHTPLHIAAREGHVETALALLEKEASQT----CMTKKGFTPLHVAAKYGKVRMAELL 554
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTD 595
A A + G T L L PRG GS H+P +
Sbjct: 555 LEHDAHPNAAGKSGLTPLHVAVHHNHLDVVRLLL------PRG--------GSPHSPALN 600
Query: 596 -HTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
+TP+ + + AE+ +G TPLH+A AEMV LL A+
Sbjct: 601 GYTPLHI-AAKQNQLEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 659
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSAT 922
N + G +PLHL + V ++L+K G A G TPL A+
Sbjct: 660 GNLGNKS-GLTPLHLVAQEGHIPVADVLIKHGVTVDATTRMGYTPLHVAS 708
>ref|NP_001095819.1| hypothetical protein LOC788407 [Bos taurus].
Length = 395
Score = 55.8 bits (133), Expect = 5e-08
Identities = 33/79 (41%), Positives = 44/79 (55%)
Frame = +2
Query: 674 LEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLEL 853
+E + G TPLH+AV+ +VRLL + GA + + GR+PLH A + V EL
Sbjct: 79 VEERDGAGRTPLHLAVLRGHVSLVRLLLQRGAQVGAAD-RAGRTPLHEAAWHGPSRVAEL 137
Query: 854 LLKAGADPAARMYGGRTPL 910
LL+ GA AR G TPL
Sbjct: 138 LLRRGAPANARCLAGLTPL 156
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,977,296
Number of extensions: 1018812
Number of successful extensions: 8104
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 7542
Number of HSP's successfully gapped: 56
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013055
(973 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355945.1| PREDICTED: NF-kappa-B inhibitor beta-like [S... 400 e-112
Alignment gi|NP_001005150.1| NF-kappa-B inhibitor alpha [Sus scrofa]. 103 1e-22
Alignment gi|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus ... 84 1e-16
Alignment gi|XP_003121353.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repe... 73 3e-13
Alignment gi|XP_003134273.2| PREDICTED: ankyrin-1-like, partial [Sus scro... 63 2e-10
Alignment gi|NP_001090981.1| 2-5A-dependent ribonuclease [Sus scrofa]. 60 1e-09
Alignment gi|XP_003127554.1| PREDICTED: serine/threonine-protein phosphat... 56 3e-08
Alignment gi|XP_003129286.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin-2, p... 53 2e-07
Alignment gi|XP_003132829.1| PREDICTED: receptor-interacting serine/threo... 53 3e-07
Alignment gi|XP_003356417.1| PREDICTED: e3 ubiquitin-protein ligase MIB1 ... 53 3e-07
>ref|XP_003355945.1| PREDICTED: NF-kappa-B inhibitor beta-like [Sus scrofa].
Length = 318
Score = 400 bits (1028), Expect = e-112
Identities = 206/239 (86%), Positives = 206/239 (86%), Gaps = 1/239 (0%)
Frame = +2
Query: 257 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 436
ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL
Sbjct: 15 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 74
Query: 437 LVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 616
LVAERGGHTAL LQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY
Sbjct: 75 LVAERGGHTALHLACRVRAHACACVLLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 134
Query: 617 PXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 796
P WKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC
Sbjct: 135 PEPDLEKEEDESEEDWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 194
Query: 797 GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLAR-LSVHTAP 970
GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLAR L H AP
Sbjct: 195 GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLARLLRAHGAP 253
>ref|NP_001005150.1| NF-kappa-B inhibitor alpha [Sus scrofa].
Length = 314
Score = 103 bits (257), Expect = 1e-22
Identities = 76/234 (32%), Positives = 102/234 (43%), Gaps = 1/234 (0%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPF-LDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
+TEDGD+ LHLA+IH+ + ++ + +L+ QN+L QT LHLA I + E
Sbjct: 70 LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 129
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AG + + G+T L QPR G+ H
Sbjct: 130 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR--------------GTQHLHSI 175
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
L+A NY GHT LH+A IH +V LL GAD
Sbjct: 176 ---------------------------LQATNYNGHTCLHLASIHGYLGIVELLVSLGAD 208
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPN 934
+N EP GR+ LHLAV+ Q D++ LLLK GAD Y G +P RP+
Sbjct: 209 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 262
Score = 52.4 bits (124), Expect = 4e-07
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +2
Query: 662 WKLQLEAENYEGHTPLHVAVIHKDA----EMVRLLREAGADLNKPEPTCGRSPLHLAVEA 829
WK QL + G + LH+A+IH++ E+VR ++ A LN + ++PLHLAV
Sbjct: 66 WKQQLTED---GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNF-QNNLQQTPLHLAVIT 121
Query: 830 QAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLARLSVHTAP 970
++ E LL+AG DP R + G TPL A LA + V T P
Sbjct: 122 NQPEIAEALLEAGCDPELRDFRGNTPLHLAC--EQGCLASVGVLTQP 166
>ref|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus scrofa].
Length = 959
Score = 84.0 bits (206), Expect = 1e-16
Identities = 74/241 (30%), Positives = 101/241 (41%), Gaps = 4/241 (1%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGT---EYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GD+ LHLA+IH H + LL +G E ++++NDL QT LHLA I + + VE
Sbjct: 525 ENGDSVLHLAIIHLHAQLVRDLLEVTSGLISDEIINMRNDLYQTPLHLAVITKQEAVVED 584
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AGA L + +R G++ L L+
Sbjct: 585 LLRAGADLSLLDRLGNSVLHLAAKEGHDKILSILLK------------------------ 620
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
H AL + N EG +HVA++ + LL AGAD
Sbjct: 621 -HKKAALL-------------------INHPNGEGLNAIHVAMMSNSLPCLLLLMAAGAD 660
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLE-LLLKAGADPAARMYGGRTPLGSATLRPNPVLAR 949
+N E GR+ LHLAVE + LLL+ A + Y G TPL A R + LA
Sbjct: 661 VNAQERKSGRTALHLAVELDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAA 720
Query: 950 L 952
L
Sbjct: 721 L 721
>ref|XP_003121353.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing
protein 6-like [Sus scrofa].
Length = 727
Score = 72.8 bits (177), Expect = 3e-13
Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 4/243 (1%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKL 415
VT+ G TALHLA H + LL AG + LD+Q+D QTALH A ++G + L
Sbjct: 38 VTKHGRTALHLAANKGHLSVVQILL--KAGCD-LDVQDDGDQTALHRATVVGNTEVIAAL 94
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQP----RPRRPRGAPNTYLAQGSDHT 583
G +L ++ G+TAL ++ + G +LA + H
Sbjct: 95 IQEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLAKNKAGNTALHLACQNSHA 154
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
T + + +N G T LHVA + +++LL A
Sbjct: 155 QST------------------RVLLLGGSRADLKNNAGDTCLHVAARYNHLSIIKLLLSA 196
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVL 943
+++ + G + LH+A V+++LL+AGAD G+TPL +A NP +
Sbjct: 197 FCSVHE-KNQAGDTALHIAAALNHKKVVKILLEAGADGTIVNNAGQTPLETARYHNNPEV 255
Query: 944 ARL 952
A L
Sbjct: 256 ALL 258
>ref|XP_003134273.2| PREDICTED: ankyrin-1-like, partial [Sus scrofa].
Length = 1419
Score = 63.2 bits (152), Expect = 2e-10
Identities = 66/231 (28%), Positives = 90/231 (38%), Gaps = 5/231 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYA 421
++G T LH+AV H H + LL G+ + N G T LH+AA + L
Sbjct: 561 KNGLTPLHVAVHHNHLDIVKLLLP-RGGSPHSPAWN--GYTPLHIAAKQNQMEVARSLLQ 617
Query: 422 AGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTP----- 586
G S G T L L + N L S TP
Sbjct: 618 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-------NGNLGNKSGLTPLHLVA 670
Query: 587 DTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAG 766
H PVA + ++A G+TPLHVA + + ++V+ L +
Sbjct: 671 QEGHVPVA------------DVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 718
Query: 767 ADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSA 919
AD+N + G SPLH A + D++ LLLK GA P G TPL A
Sbjct: 719 ADVNA-KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIA 768
Score = 56.2 bits (134), Expect = 3e-08
Identities = 63/238 (26%), Positives = 87/238 (36%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKL 415
VTE G T LH+A H P + LL A ++ N +T LH+AA G + L
Sbjct: 394 VTESGLTPLHVASFMGHLPIVKNLLQRDASP---NVSNVKVETPLHMAARAGHTEVAKYL 450
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTD 595
A + + T L L+ PN G
Sbjct: 451 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-----PNLATTAG-------- 497
Query: 596 HTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADL 775
HTP+ + Q +G TPLHVA + + LL E A
Sbjct: 498 HTPLHIAAREGHVETALALLEKGASQA-CMTKKGFTPLHVAAKYGKVRVAELLLEHDAHP 556
Query: 776 NKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLAR 949
N G +PLH+AV D+++LLL G P + + G TPL A + +AR
Sbjct: 557 NAAGKN-GLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVAR 613
Score = 53.1 bits (126), Expect = 2e-07
Identities = 66/247 (26%), Positives = 91/247 (36%), Gaps = 20/247 (8%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYA 421
+D T LH A H + LL A +L G T LH+AA G T L
Sbjct: 462 KDDQTPLHCAARIGHTNMVKLLLENNANP---NLATTAGHTPLHIAAREGHVETALALLE 518
Query: 422 AGASLLVAERGGHTALXXXXXXXXXXXXXXXLQ----PRPRRPRGAPNTYLAQ------- 568
GAS + G T L L+ P G ++A
Sbjct: 519 KGASQACMTKKGFTPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHNHLDI 578
Query: 569 --------GSDHTPDTD-HTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAV 721
GS H+P + +TP+ + + AE+ +G TPLH+A
Sbjct: 579 VKLLLPRGGSPHSPAWNGYTPLHI-AAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAA 637
Query: 722 IHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGR 901
AEMV LL A+ N + G +PLHL + V ++L+K G A G
Sbjct: 638 QEGHAEMVALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGY 696
Query: 902 TPLGSAT 922
TPL A+
Sbjct: 697 TPLHVAS 703
Score = 51.6 bits (122), Expect = 6e-07
Identities = 63/225 (28%), Positives = 79/225 (35%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKL 415
+T D T LH+A H LL A L G T LH+A +E L
Sbjct: 328 ITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALN---GFTPLHIACKKNHIRVMELL 384
Query: 416 YAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTD 595
GAS+ G T L LQ R P N +
Sbjct: 385 LKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQ-RDASP-NVSNVKVETPLHMAARAG 442
Query: 596 HTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADL 775
HT VA Y K ++ A+ + TPLH A MV+LL E A+
Sbjct: 443 HTEVAKYLLQN------------KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 490
Query: 776 NKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPL 910
N T G +PLH+A + LL+ GA A G TPL
Sbjct: 491 NL-ATTAGHTPLHIAAREGHVETALALLEKGASQACMTKKGFTPL 534
>ref|NP_001090981.1| 2-5A-dependent ribonuclease [Sus scrofa].
Length = 743
Score = 60.5 bits (145), Expect = 1e-09
Identities = 37/79 (46%), Positives = 43/79 (54%)
Frame = +2
Query: 716 AVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYG 895
AV D E VR L E GAD N E G SPLH AV+ + D++ LLLK GADP R
Sbjct: 30 AVQEADIEQVRQLLERGADANFQEEEWGWSPLHSAVQMDSEDLVALLLKHGADPCLRKRN 89
Query: 896 GRTPLGSATLRPNPVLARL 952
G TP A + N L +L
Sbjct: 90 GATPFIIAGITGNVRLLQL 108
>ref|XP_003127554.1| PREDICTED: serine/threonine-protein phosphatase 6 regulatory
ankyrin repeat subunit C-like [Sus scrofa].
Length = 433
Score = 56.2 bits (134), Expect = 3e-08
Identities = 37/91 (40%), Positives = 47/91 (51%)
Frame = +2
Query: 674 LEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLEL 853
LE + G TPLH+AV+ +VRLL + GA + GR+PLH A + V EL
Sbjct: 117 LEERDSAGRTPLHLAVLRGHVPLVRLLLQRGAPAGASD-RAGRTPLHEAAWQGHSQVAEL 175
Query: 854 LLKAGADPAARMYGGRTPLGSATLRPNPVLA 946
LL+ GA AR G TPL A +LA
Sbjct: 176 LLRRGARADARCGAGLTPLHWAAALGRTLLA 206
Score = 50.8 bits (120), Expect = 1e-06
Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 1/180 (0%)
Frame = +2
Query: 365 ALHLAAILGEASTVEKLYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRG 544
AL +AA G ++ + L A GA + + G TAL RP+
Sbjct: 254 ALLVAAAAGRSTALRLLLARGARVDARDGAGATALGFAAALG--------------RPQD 299
Query: 545 APNTYLAQGSDHTPDTDHTPVALY-PXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAV 721
L G+D + H+ AL+ W +++A++ G TPLH A
Sbjct: 300 V-EVLLEHGADPSLKDRHSRSALHRAAAGGHLLAVQLLAAWGAEVDAQDSLGLTPLHYAA 358
Query: 722 IHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGR 901
E+ L + GA++N ++PLHLAVE ELLL GA P R G+
Sbjct: 359 RRGHKEVAGHLLDRGAEVNAAG-WLHQTPLHLAVERGHGPTAELLLSRGASPTLRTRWGQ 417
>ref|XP_003129286.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin-2, partial [Sus scrofa].
Length = 4181
Score = 53.1 bits (126), Expect = 2e-07
Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 12/257 (4%)
Frame = +2
Query: 239 TEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLY 418
T+ G+TALH+A + + L+ A ++ Q+ G T L++AA V+ L
Sbjct: 363 TKKGNTALHIASLAGQAEVVKVLVKEGAN---INAQSQNGFTPLYMAAQENHIDVVKYLL 419
Query: 419 AAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDH 598
GA+ A G T L L+ + P ++A D DT
Sbjct: 420 ENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKD---DTKS 476
Query: 599 TPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLN 778
+ L K+ + G TPLH+A + + + LL GA ++
Sbjct: 477 AALLLQNDHNADVQS-------KMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVD 529
Query: 779 KPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATL----------- 925
G +PLH+A + ++++LLL G A+ G TPL A
Sbjct: 530 FTARN-GITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLL 588
Query: 926 -RPNPVLARLSVHTAPL 973
R P+LAR +PL
Sbjct: 589 ERGAPLLARTKNGLSPL 605
Score = 52.4 bits (124), Expect = 4e-07
Identities = 62/247 (25%), Positives = 94/247 (38%), Gaps = 20/247 (8%)
Frame = +2
Query: 239 TEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLY 418
T+ G T+LHLA D L A D LG T L +A G V L
Sbjct: 197 TKSGLTSLHLAAQEDKVNVADILTKHGADQ---DAHTKLGYTPLIVACHYGNVKMVNFLL 253
Query: 419 AAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRP---RRPRGAPNT----------- 556
GA++ + G TAL L+ R R N
Sbjct: 254 KQGANVNAKTKRGETALHMAARAGQVEVVRCLLRNGALVDARARSDSNASFLRAARAGNL 313
Query: 557 -----YLAQGSDHTPDTDHTPVALYPXXXXXXXXXXXXXXWK-LQLEAENYEGHTPLHVA 718
YL G D + AL+ + +++ +G+T LH+A
Sbjct: 314 DKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATKKGNTALHIA 373
Query: 719 VIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGG 898
+ AE+V++L + GA++N G +PL++A + DV++ LL+ GA+ + G
Sbjct: 374 SLAGQAEVVKVLVKEGANINAQSQN-GFTPLYMAAQENHIDVVKYLLENGANQSTATEDG 432
Query: 899 RTPLGSA 919
TPL A
Sbjct: 433 FTPLAVA 439
>ref|XP_003132829.1| PREDICTED: receptor-interacting serine/threonine-protein kinase
4-like [Sus scrofa].
Length = 789
Score = 52.8 bits (125), Expect = 3e-07
Identities = 56/210 (26%), Positives = 81/210 (38%), Gaps = 2/210 (0%)
Frame = +2
Query: 335 LDLQNDLGQTALHLAAILGEASTVEKLYAAGASLLVAERGGHTALXXXXXXXXXXXXXXX 514
+DL D G + LHLA G+ V+ L A+ + R G T L
Sbjct: 436 VDLVLDGGASLLHLAVEAGQEDCVKWLLLNNANPNLTNRKGSTPLHVAVE---------- 485
Query: 515 LQPRPRRPRGAPNTYLAQG-SDHTPDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENY 691
+R RG LA+ S + D D + + +
Sbjct: 486 -----KRVRGVVELLLARKISVNATDEDQWTALHFAAQNGDEGSTRLLLEKNASVHEADC 540
Query: 692 EGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLK-AG 868
EG TP+HVA H +VR+L G D+ P +PLH A +++LL K G
Sbjct: 541 EGRTPMHVACQHGQEGVVRILLRRGVDVGLPGKDAW-APLHYAAWQGHLPIVKLLAKQPG 599
Query: 869 ADPAARMYGGRTPLGSATLRPNPVLARLSV 958
A+ GRTPL A R + +AR+ +
Sbjct: 600 VSVNAQTLDGRTPLHLAAQRGHYRVARVLI 629
>ref|XP_003356417.1| PREDICTED: e3 ubiquitin-protein ligase MIB1 [Sus scrofa].
Length = 1006
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/99 (34%), Positives = 49/99 (49%)
Frame = +2
Query: 674 LEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLEL 853
L A N TPLH+AV ++V+ L + G + + G +PLH A+ + D+L +
Sbjct: 523 LNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSE-GDTPLHDAISKKRDDILAV 581
Query: 854 LLKAGADPAARMYGGRTPLGSATLRPNPVLARLSVHTAP 970
LL+AGAD G L A LR NP R+ + P
Sbjct: 582 LLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLP 620
Score = 50.1 bits (118), Expect = 2e-06
Identities = 32/84 (38%), Positives = 42/84 (50%)
Frame = +2
Query: 218 PLVFGYVTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEA 397
P + +DG TALHLA ++ H + L+ G LD+QN QTALHLA
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVH--QGNANLDIQNVNQQTALHLAVERQHT 679
Query: 398 STVEKLYAAGASLLVAERGGHTAL 469
V L AGA L + ++ G T L
Sbjct: 680 QIVRLLVRAGAKLDIQDKDGDTPL 703
Score = 47.8 bits (112), Expect = 9e-06
Identities = 52/201 (25%), Positives = 73/201 (36%)
Frame = +2
Query: 254 TALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAS 433
T LH+AV H + LL F + LQ+ G T LH A + L AGA
Sbjct: 532 TPLHIAVNKGHLQVVKTLLDFGC---HPSLQDSEGDTPLHDAISKKRDDILAVLLEAGAD 588
Query: 434 LLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVAL 613
+ + G AL L PR ++ D D +T + L
Sbjct: 589 VTITNNNGFNALHHAALRGNPSAMRVLLSKLPR-------PWIV---DEKKDDGYTALHL 638
Query: 614 YPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPT 793
L+ +N T LH+AV + ++VRLL AGA L+ +
Sbjct: 639 AALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKD 698
Query: 794 CGRSPLHLAVEAQAADVLELL 856
G +PLH A+ L L
Sbjct: 699 -GDTPLHEALRHHTLSQLRQL 718
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,616,459
Number of extensions: 662614
Number of successful extensions: 5139
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4817
Number of HSP's successfully gapped: 37
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013055
(973 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035038.2| NF-kappa-B inhibitor beta [Mus musculus]. 409 e-114
Alignment gi|NP_032716.2| NF-kappa-B inhibitor epsilon [Mus musculus]. 114 1e-25
Alignment gi|NP_035037.2| NF-kappa-B inhibitor alpha [Mus musculus]. 102 4e-22
Alignment gi|NP_291079.2| B-cell lymphoma 3 protein homolog [Mus musculus]. 94 2e-19
Alignment gi|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isofo... 86 6e-17
Alignment gi|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isofo... 86 6e-17
Alignment gi|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform ... 86 6e-17
Alignment gi|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus mus... 82 5e-16
Alignment gi|NP_536692.1| ankyrin repeat and SOCS box protein 10 [Mus mus... 67 2e-11
Alignment gi|XP_144122.7| PREDICTED: ankyrin repeat domain-containing pro... 62 9e-10
>ref|NP_035038.2| NF-kappa-B inhibitor beta [Mus musculus].
Length = 359
Score = 409 bits (1050), Expect = e-114
Identities = 211/299 (70%), Positives = 220/299 (73%), Gaps = 1/299 (0%)
Frame = +2
Query: 77 MAGVACLGKAADTDEWCDXXXXXXXXXXXXXXXXXXXXXXXXXXXWAPLVFGYVTEDGDT 256
MAGVACLGK AD DEWCD WAPLVFGYVTEDGDT
Sbjct: 1 MAGVACLGKTADADEWCDSGLGSLGPDAAAPGGPGLGAELGPELSWAPLVFGYVTEDGDT 60
Query: 257 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 436
ALHLAVIHQHEPFLDFLLGF+AGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA +
Sbjct: 61 ALHLAVIHQHEPFLDFLLGFSAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 120
Query: 437 LVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 616
LVAERGGHTAL LQPRP PR A +TYL Q D TPDT H P A+
Sbjct: 121 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 180
Query: 617 PXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 796
W+LQLEAENY+GHTPLHVAVIHKDAEMVRLLR+AGADLNKPEPTC
Sbjct: 181 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 240
Query: 797 GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLAR-LSVHTAP 970
GR+PLHLAVEAQAA VLELLLKAGADP ARMYGGRTPLGSA LRPNP+LAR L H AP
Sbjct: 241 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 299
>ref|NP_032716.2| NF-kappa-B inhibitor epsilon [Mus musculus].
Length = 364
Score = 114 bits (285), Expect = 1e-25
Identities = 81/234 (34%), Positives = 110/234 (47%), Gaps = 2/234 (0%)
Frame = +2
Query: 233 YVTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
Y++EDGDT LHLAVIH+ L L F E LD+QN+L QTALHLA L + V
Sbjct: 118 YISEDGDTLLHLAVIHEAPSVLFCCLAFLP-QEVLDIQNNLYQTALHLAVHLDQPDVVRA 176
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXL--QPRPRRPRGAPNTYLAQGSDHTP 586
L GAS ++ ++ G TAL L QP P R P
Sbjct: 177 LVLKGASRILQDQHGDTALHVACRRQNLACACCLLEEQPEPGRQLSHP------------ 224
Query: 587 DTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAG 766
L L+ +N++G LH+A + ++ ++ LL + G
Sbjct: 225 ---------------------------LDLQLKNWQGLACLHIATLQRNQPLIELLLQNG 257
Query: 767 ADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLR 928
AD++ E T G++ LHLAVE Q +++ LL+AGA ARM G TPL A R
Sbjct: 258 ADIDVQEGTSGKTALHLAVETQERSLVQFLLQAGARVDARMLNGCTPLHLAAGR 311
>ref|NP_035037.2| NF-kappa-B inhibitor alpha [Mus musculus].
Length = 314
Score = 102 bits (254), Expect = 4e-22
Identities = 77/234 (32%), Positives = 104/234 (44%), Gaps = 1/234 (0%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPFLDFLLGFAAGT-EYLDLQNDLGQTALHLAAILGEASTVEK 412
+TEDGD+ LHLA+IH+ +P ++G G +L+ QN+L QT LHLA I + E
Sbjct: 70 LTEDGDSFLHLAIIHEEKPLTMEVIGQVKGDLAFLNFQNNLQQTPLHLAVITNQPGIAEA 129
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AG + + G+T L +G + TP
Sbjct: 130 LLKAGCDPELRDFRGNTPLHLACE------------------QGCLASVAVLTQTCTPQH 171
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
H+ L+A NY GHT LH+A IH +V L GAD
Sbjct: 172 LHSV-----------------------LQATNYNGHTCLHLASIHGYLAIVEHLVTLGAD 208
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPN 934
+N EP GR+ LHLAV+ Q D++ LLLK GAD Y G +P RP+
Sbjct: 209 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 262
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +2
Query: 662 WKLQLEAENYEGHTPLHVAVIHKDAEM-VRLLREAGADLN--KPEPTCGRSPLHLAVEAQ 832
WK QL + G + LH+A+IH++ + + ++ + DL + ++PLHLAV
Sbjct: 66 WKQQLTED---GDSFLHLAIIHEEKPLTMEVIGQVKGDLAFLNFQNNLQQTPLHLAVITN 122
Query: 833 AADVLELLLKAGADPAARMYGGRTPL 910
+ E LLKAG DP R + G TPL
Sbjct: 123 QPGIAEALLKAGCDPELRDFRGNTPL 148
>ref|NP_291079.2| B-cell lymphoma 3 protein homolog [Mus musculus].
Length = 448
Score = 94.0 bits (232), Expect = 2e-19
Identities = 80/244 (32%), Positives = 107/244 (43%), Gaps = 1/244 (0%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPFLDFLLG-FAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
V EDGDT LH+AV+ + + +L F G+ +D+ N+L QT LHLA I V
Sbjct: 126 VDEDGDTPLHIAVVQNNIAAVYRILSLFKLGSREVDVHNNLRQTPLHLAVITTLPDMVRL 185
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AGAS + +R G TA+ H
Sbjct: 186 LVTAGASPMALDRHGQTAI------------------------------------HLACE 209
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
+P L + LE NYEG T LHVAV E V LL E GAD
Sbjct: 210 HRSPSCLQALLDSATSG-------SVDLEVRNYEGLTALHVAVNTGCQEAVLLLLERGAD 262
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLARL 952
++ + GRSPL AVE + ++++LLL GA+ A+MY G + L SA+ R L R
Sbjct: 263 IDAVDIKSGRSPLIHAVENNSLNMVQLLLLHGANVNAQMYSGSSALHSASGRGLLPLVRT 322
Query: 953 SVHT 964
V +
Sbjct: 323 LVRS 326
>ref|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isoform b [Mus musculus].
Length = 900
Score = 85.5 bits (210), Expect = 6e-17
Identities = 74/244 (30%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYL---DLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ + +YL +L N L QT LHLA I G+ V
Sbjct: 486 ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAP---NTYLAQGSDHT 583
L GA + +R G +AL R AP L G+
Sbjct: 546 LLQVGADPTLLDRHGDSALHLAL----------------RAGAAAPELLQALLRSGAHAV 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL +
Sbjct: 590 PQILHMP---------------------------DFEGLYPVHLAVHARSPECLDLLVDC 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ PE GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 623 GAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNARTFAGNTPLHLAAGLGSPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
Length = 899
Score = 85.5 bits (210), Expect = 6e-17
Identities = 74/244 (30%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYL---DLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ + +YL +L N L QT LHLA I G+ V
Sbjct: 486 ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAP---NTYLAQGSDHT 583
L GA + +R G +AL R AP L G+
Sbjct: 546 LLQVGADPTLLDRHGDSALHLAL----------------RAGAAAPELLQALLRSGAHAV 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL +
Sbjct: 590 PQILHMP---------------------------DFEGLYPVHLAVHARSPECLDLLVDC 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ PE GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 623 GAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNARTFAGNTPLHLAAGLGSPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
Length = 899
Score = 85.5 bits (210), Expect = 6e-17
Identities = 74/244 (30%), Positives = 101/244 (41%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYL---DLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ + +YL +L N L QT LHLA I G+ V
Sbjct: 486 ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAP---NTYLAQGSDHT 583
L GA + +R G +AL R AP L G+
Sbjct: 546 LLQVGADPTLLDRHGDSALHLAL----------------RAGAAAPELLQALLRSGAHAV 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL +
Sbjct: 590 PQILHMP---------------------------DFEGLYPVHLAVHARSPECLDLLVDC 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ PE GR+ LHLA E + V L+ K A+ AR + G TPL A +P
Sbjct: 623 GAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNARTFAGNTPLHLAAGLGSPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus musculus].
Length = 971
Score = 82.4 bits (202), Expect = 5e-16
Identities = 70/241 (29%), Positives = 99/241 (41%), Gaps = 4/241 (1%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGT---EYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GD+ LHLA+IH H + LL +G + ++++NDL QT LHLA I + VE
Sbjct: 537 ENGDSVLHLAIIHLHAQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 596
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L GA L + +R G++ L L+ R P
Sbjct: 597 LLRVGADLSLLDRWGNSVLHLAAKEGHDRILSILLKSRKAAP------------------ 638
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
++ N EG +H+AV+ + LL AGA+
Sbjct: 639 --------------------------LIDHPNGEGLNAIHIAVMSNSLPCLLLLVAAGAE 672
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLE-LLLKAGADPAARMYGGRTPLGSATLRPNPVLAR 949
+N E GR+ LHLAVE + LLL+ A + Y G TPL A R + LA
Sbjct: 673 VNAQEQKSGRTALHLAVEYDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAA 732
Query: 950 L 952
L
Sbjct: 733 L 733
>ref|NP_536692.1| ankyrin repeat and SOCS box protein 10 [Mus musculus].
Length = 467
Score = 67.0 bits (162), Expect = 2e-11
Identities = 74/254 (29%), Positives = 95/254 (37%), Gaps = 13/254 (5%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYA 421
E+ T LH+A H L+ LL A + G+TALH A G A+ V L
Sbjct: 114 EELTTPLHVAASRGHTEVLELLLRRRAKPD----SAPGGRTALHEACSAGHAACVRVLLV 169
Query: 422 AGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHT 601
AGA ++ G L L+ + AQ T D + T
Sbjct: 170 AGADPNTLDQDGKRPLHLCRGPGILECVELLLK------------FGAQVDGRTEDEEET 217
Query: 602 PVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAV-----IHKDAE--------M 742
P+ + W + N EG TPL A KDAE +
Sbjct: 218 PLHI-AARLGHVELADLLLRWGACPDVRNSEGWTPLLAACDIRCQSPKDAEATTNRCFQL 276
Query: 743 VRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSAT 922
RLL GAD + R PLHLA + V++LLL G + A YGG TPL A
Sbjct: 277 CRLLLSVGADADAANQDKQR-PLHLACRHGHSAVVQLLLSCGVNANAMDYGGHTPLHCAL 335
Query: 923 LRPNPVLARLSVHT 964
L P +A HT
Sbjct: 336 LGPTTAVAHSPEHT 349
>ref|XP_144122.7| PREDICTED: ankyrin repeat domain-containing protein 50 [Mus
musculus].
Length = 364
Score = 61.6 bits (148), Expect = 9e-10
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 674 LEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLEL 853
+E ++ G TPLH+AV+ A +VRLL + GA P+ T GR+PLH A ++V EL
Sbjct: 59 VEERDHTGRTPLHLAVMRGHAPLVRLLLQRGALAGAPDHT-GRTPLHEAAWHGHSNVAEL 117
Query: 854 LLKAGADPAARMYGGRTPL-GSATL 925
LL+ GA AA G TPL G+A L
Sbjct: 118 LLRRGASAAACSQTGLTPLHGAAAL 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,930,084
Number of extensions: 829761
Number of successful extensions: 6301
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 5699
Number of HSP's successfully gapped: 57
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013055
(973 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002494.2| NF-kappa-B inhibitor beta isoform 1 [Homo sapie... 428 e-120
Alignment gi|NP_001230045.1| NF-kappa-B inhibitor beta isoform 2 [Homo sa... 316 2e-86
Alignment gi|NP_004547.2| NF-kappa-B inhibitor epsilon [Homo sapiens]. 116 4e-26
Alignment gi|NP_005169.2| B-cell lymphoma 3 protein [Homo sapiens]. 102 7e-22
Alignment gi|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isofo... 85 9e-17
Alignment gi|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isofo... 85 9e-17
Alignment gi|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform ... 85 9e-17
Alignment gi|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isofo... 81 1e-15
Alignment gi|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform ... 81 1e-15
Alignment gi|NP_065390.1| NF-kappa-B inhibitor alpha [Homo sapiens]. 75 9e-14
>ref|NP_002494.2| NF-kappa-B inhibitor beta isoform 1 [Homo sapiens].
Length = 356
Score = 428 bits (1101), Expect = e-120
Identities = 220/299 (73%), Positives = 229/299 (76%), Gaps = 1/299 (0%)
Frame = +2
Query: 77 MAGVACLGKAADTDEWCDXXXXXXXXXXXXXXXXXXXXXXXXXXXWAPLVFGYVTEDGDT 256
MAGVACLGKAAD DEWCD WAPLVFGYVTEDGDT
Sbjct: 1 MAGVACLGKAADADEWCDSGLGSLGPDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDT 60
Query: 257 ALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 436
ALHLAVIHQHEPFLDFLLGF+AGTEY+DLQNDLGQTALHLAAILGE STVEKLYAAGA L
Sbjct: 61 ALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGL 120
Query: 437 LVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 616
VAER GHTAL LQPRPRRPR AP+TYLAQG D TPDT+HTPVALY
Sbjct: 121 CVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALY 180
Query: 617 PXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 796
P WKLQLEAENYEGHTPLHVAVIHKD EMVRLLR+AGADL+KPEPTC
Sbjct: 181 PDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTC 240
Query: 797 GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLAR-LSVHTAP 970
GRSPLHLAVEAQAADVLELLL+AGA+PAARMYGGRTPLGSA LRPNP+LAR L H AP
Sbjct: 241 GRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAP 299
>ref|NP_001230045.1| NF-kappa-B inhibitor beta isoform 2 [Homo sapiens].
Length = 270
Score = 316 bits (809), Expect = 2e-86
Identities = 163/213 (76%), Positives = 171/213 (80%), Gaps = 1/213 (0%)
Frame = +2
Query: 335 LDLQNDLGQTALHLAAILGEASTVEKLYAAGASLLVAERGGHTALXXXXXXXXXXXXXXX 514
+DLQNDLGQTALHLAAILGE STVEKLYAAGA L VAER GHTAL
Sbjct: 1 MDLQNDLGQTALHLAAILGETSTVEKLYAAGAGLCVAERRGHTALHLACRVGAHACARAL 60
Query: 515 LQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYE 694
LQPRPRRPR AP+TYLAQG D TPDT+HTPVALYP WKLQLEAENYE
Sbjct: 61 LQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALYPDSDLEKEEEESEEDWKLQLEAENYE 120
Query: 695 GHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLELLLKAGAD 874
GHTPLHVAVIHKD EMVRLLR+AGADL+KPEPTCGRSPLHLAVEAQAADVLELLL+AGA+
Sbjct: 121 GHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAADVLELLLRAGAN 180
Query: 875 PAARMYGGRTPLGSATLRPNPVLAR-LSVHTAP 970
PAARMYGGRTPLGSA LRPNP+LAR L H AP
Sbjct: 181 PAARMYGGRTPLGSAMLRPNPILARLLRAHGAP 213
>ref|NP_004547.2| NF-kappa-B inhibitor epsilon [Homo sapiens].
Length = 500
Score = 116 bits (290), Expect = 4e-26
Identities = 82/232 (35%), Positives = 110/232 (47%)
Frame = +2
Query: 233 YVTEDGDTALHLAVIHQHEPFLDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
Y++EDGDT +HLAVIH+ L L E LD+QN+L QTALHLA L + V
Sbjct: 254 YISEDGDTLVHLAVIHEAPAVLLCCLALLP-QEVLDIQNNLYQTALHLAVHLDQPGAVRA 312
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L GAS + +R G TAL L+ RP RG T
Sbjct: 313 LVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGRG---------------T 357
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
H+ L L+ +N++G LH+A + K+ ++ LL GAD
Sbjct: 358 SHS----------------------LDLQLQNWQGLACLHIATLQKNQPLMELLLRNGAD 395
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLR 928
++ E T G++ LHLAVE Q +++ LL+AGA ARM G TPL A R
Sbjct: 396 IDVQEGTSGKTALHLAVETQERGLVQFLLQAGAQVDARMLNGCTPLHLAAGR 447
>ref|NP_005169.2| B-cell lymphoma 3 protein [Homo sapiens].
Length = 454
Score = 102 bits (253), Expect = 7e-22
Identities = 84/242 (34%), Positives = 109/242 (45%), Gaps = 1/242 (0%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLG-FAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLY 418
EDGDT LH+AV+ + P + L+ F G LD+ N+L QT LHLA I S V L
Sbjct: 133 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 192
Query: 419 AAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDTDH 598
AGAS + +R G TA L AP T
Sbjct: 193 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS------AAPGT-------------- 232
Query: 599 TPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLN 778
L LEA NY+G T LHVAV + E V+LL E GAD++
Sbjct: 233 -----------------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 269
Query: 779 KPEPTCGRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPNPVLARLSV 958
+ GRSPL AVE + +++LLL+ GA+ A+MY G + L SA+ R L R V
Sbjct: 270 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 329
Query: 959 HT 964
+
Sbjct: 330 RS 331
>ref|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isoform a [Homo sapiens].
Length = 900
Score = 85.1 bits (209), Expect = 9e-17
Identities = 73/244 (29%), Positives = 103/244 (42%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLD---FLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ +++ A ++L N L QT LHLA I G+ S V
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R GAP L G+
Sbjct: 546 LLRVGADPALLDRHGDSAMHLAL----------------RAGAGAPELLRALLQSGAPAV 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL ++
Sbjct: 590 PQLLHMP---------------------------DFEGLYPVHLAVRARSPECLDLLVDS 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A P
Sbjct: 623 GAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
Length = 899
Score = 85.1 bits (209), Expect = 9e-17
Identities = 73/244 (29%), Positives = 103/244 (42%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLD---FLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ +++ A ++L N L QT LHLA I G+ S V
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R GAP L G+
Sbjct: 546 LLRVGADPALLDRHGDSAMHLAL----------------RAGAGAPELLRALLQSGAPAV 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL ++
Sbjct: 590 PQLLHMP---------------------------DFEGLYPVHLAVRARSPECLDLLVDS 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A P
Sbjct: 623 GAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
Length = 899
Score = 85.1 bits (209), Expect = 9e-17
Identities = 73/244 (29%), Positives = 103/244 (42%), Gaps = 7/244 (2%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLD---FLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GDT LHLA+IH ++ +++ A ++L N L QT LHLA I G+ S V
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPN---TYLAQGSDHT 583
L GA + +R G +A+ R GAP L G+
Sbjct: 546 LLRVGADPALLDRHGDSAMHLAL----------------RAGAGAPELLRALLQSGAPAV 589
Query: 584 PDTDHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREA 763
P H P ++EG P+H+AV + E + LL ++
Sbjct: 590 PQLLHMP---------------------------DFEGLYPVHLAVRARSPECLDLLVDS 622
Query: 764 GADLNKPEPTCGRSPLHLAVEAQAAD-VLELLLKAGADPAARMYGGRTPLGSATLRPNPV 940
GA++ E GR+ LHLA E + V L+ K A+ AR + G TPL A P
Sbjct: 623 GAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPT 682
Query: 941 LARL 952
L RL
Sbjct: 683 LTRL 686
>ref|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isoform 2 [Homo sapiens].
Length = 968
Score = 81.3 bits (199), Expect = 1e-15
Identities = 72/241 (29%), Positives = 101/241 (41%), Gaps = 4/241 (1%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGT---EYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GD+ LHLA+IH H + LL +G + ++++NDL QT LHLA I + VE
Sbjct: 541 ENGDSVLHLAIIHLHSQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 600
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AGA L + +R G++ L L+
Sbjct: 601 LLRAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLK------------------------ 636
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
H AL L+ N +G +H+A++ + LL AGAD
Sbjct: 637 -HKKAALL-------------------LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGAD 676
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLE-LLLKAGADPAARMYGGRTPLGSATLRPNPVLAR 949
+N E GR+ LHLAVE + LLL+ A + Y G TPL A R + LA
Sbjct: 677 VNAQEQKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAA 736
Query: 950 L 952
L
Sbjct: 737 L 737
>ref|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform 1 [Homo sapiens].
Length = 969
Score = 81.3 bits (199), Expect = 1e-15
Identities = 72/241 (29%), Positives = 101/241 (41%), Gaps = 4/241 (1%)
Frame = +2
Query: 242 EDGDTALHLAVIHQHEPFLDFLLGFAAGT---EYLDLQNDLGQTALHLAAILGEASTVEK 412
E+GD+ LHLA+IH H + LL +G + ++++NDL QT LHLA I + VE
Sbjct: 542 ENGDSVLHLAIIHLHSQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 601
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AGA L + +R G++ L L+
Sbjct: 602 LLRAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLK------------------------ 637
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
H AL L+ N +G +H+A++ + LL AGAD
Sbjct: 638 -HKKAALL-------------------LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGAD 677
Query: 773 LNKPEPTCGRSPLHLAVEAQAADVLE-LLLKAGADPAARMYGGRTPLGSATLRPNPVLAR 949
+N E GR+ LHLAVE + LLL+ A + Y G TPL A R + LA
Sbjct: 678 VNAQEQKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAA 737
Query: 950 L 952
L
Sbjct: 738 L 738
>ref|NP_065390.1| NF-kappa-B inhibitor alpha [Homo sapiens].
Length = 317
Score = 75.1 bits (183), Expect = 9e-14
Identities = 42/87 (48%), Positives = 52/87 (59%)
Frame = +2
Query: 674 LEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTCGRSPLHLAVEAQAADVLEL 853
L+A NY GHT LH+A IH +V LL GAD+N EP GR+ LHLAV+ Q D++ L
Sbjct: 176 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 235
Query: 854 LLKAGADPAARMYGGRTPLGSATLRPN 934
LLK GAD Y G +P RP+
Sbjct: 236 LLKCGADVNRVTYQGYSPYQLTWGRPS 262
Score = 57.4 bits (137), Expect = 2e-08
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 1/183 (0%)
Frame = +2
Query: 236 VTEDGDTALHLAVIHQHEPF-LDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEK 412
+TEDGD+ LHLA+IH+ + ++ + +L+ QN+L QT LHLA I + E
Sbjct: 70 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 129
Query: 413 LYAAGASLLVAERGGHTALXXXXXXXXXXXXXXXLQPRPRRPRGAPNTYLAQGSDHTPDT 592
L AG + + G+T L Q +L T
Sbjct: 130 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-------SCTTPHLHSILKATNYN 182
Query: 593 DHTPVALYPXXXXXXXXXXXXXXWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGAD 772
HT + L E G T LH+AV ++ ++V LL + GAD
Sbjct: 183 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 242
Query: 773 LNK 781
+N+
Sbjct: 243 VNR 245
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +2
Query: 662 WKLQLEAENYEGHTPLHVAVIHKDAEM-VRLLREAGADLN--KPEPTCGRSPLHLAVEAQ 832
WK QL + G + LH+A+IH++ + + ++R+ DL + ++PLHLAV
Sbjct: 66 WKQQLTED---GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 122
Query: 833 AADVLELLLKAGADPAARMYGGRTPL 910
++ E LL AG DP R + G TPL
Sbjct: 123 QPEIAEALLGAGCDPELRDFRGNTPL 148
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,638,617
Number of extensions: 1013327
Number of successful extensions: 8412
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 7606
Number of HSP's successfully gapped: 89
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013055
(973 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 670 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 670 bits (338), Expect = 0.0
Identities = 338/338 (100%)
Strand = Plus / Minus
Query: 359 cagacagccctgcacctggcagccatcctgggggaggcatccacagtagagaagctgtac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43244063 cagacagccctgcacctggcagccatcctgggggaggcatccacagtagagaagctgtac 43244004
Query: 419 gccgcgggtgccagtttgctggtggcagagcgtgggggccacacagcgctgcacctggcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43244003 gccgcgggtgccagtttgctggtggcagagcgtgggggccacacagcgctgcacctggcc 43243944
Query: 479 tgccgcgtccgggcacacgcctgcgcttgcgtgctgctccagccccgcccccggcgcccc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43243943 tgccgcgtccgggcacacgcctgcgcttgcgtgctgctccagccccgcccccggcgcccc 43243884
Query: 539 aggggagcccccaacacctacctcgctcagggctctgaccatacccctgacacggaccac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43243883 aggggagcccccaacacctacctcgctcagggctctgaccatacccctgacacggaccac 43243824
Query: 599 accccggtggccttgtaccctgaacctgacctggagaaggaagaggatgagagtgaagag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43243823 accccggtggccttgtaccctgaacctgacctggagaaggaagaggatgagagtgaagag 43243764
Query: 659 gactggaaactgcagctggaggctgaaaactatgaagg 696
||||||||||||||||||||||||||||||||||||||
Sbjct: 43243763 gactggaaactgcagctggaggctgaaaactatgaagg 43243726
Score = 496 bits (250), Expect = e-137
Identities = 253/254 (99%)
Strand = Plus / Minus
Query: 3 ggaagctcgagaattccaggcagagcccagcgacaggcgggctgccgctgggggcccctg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43250603 ggaagctcgagaattccaggcagagcccagcgacaggcgggctgccgctgggggcccctg 43250544
Query: 63 aggcttcgggggccatggctggggttgcgtgcttggggaaggctgcggacaccgatgaat 122
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 43250543 aggcttcgggggccatggctggggttgcgtgcttggggaaagctgcggacaccgatgaat 43250484
Query: 123 ggtgcgacagcggcttgggctctctgggtccggacgcagcggcccccggaggaccaggcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43250483 ggtgcgacagcggcttgggctctctgggtccggacgcagcggcccccggaggaccaggcc 43250424
Query: 183 taggcgcggagctgggtccgggactatcgtgggcgcccctcgtcttcggctacgtcactg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43250423 taggcgcggagctgggtccgggactatcgtgggcgcccctcgtcttcggctacgtcactg 43250364
Query: 243 aggatggcgacacg 256
||||||||||||||
Sbjct: 43250363 aggatggcgacacg 43250350
Score = 363 bits (183), Expect = 1e-97
Identities = 190/191 (99%), Gaps = 1/191 (0%)
Strand = Plus / Minus
Query: 784 ggagcccacgtgcggtcggagccccttgcacttggcagtggaggcccaagcggctgacgt 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43242230 ggagcccacgtgcggtcggagccccttgcacttggcagtggaggcccaagcggctgacgt 43242171
Query: 844 gctggagcttctcctgaaggccggtgccgaccctgctgcccgtatgtacggtggccgcac 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43242170 gctggagcttctcctgaaggccggtgccgaccctgctgcccgtatgtacggtggccgcac 43242111
Query: 904 tccccttggcagtgccacgctccggcccaaccccgtcctcgcccgcct-ctccgtgcaca 962
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 43242110 tccccttggcagtgccacgctccggcccaaccccgtcctcgcccgcctcctccgtgcaca 43242051
Query: 963 cggcgcccctg 973
|||||||||||
Sbjct: 43242050 cggcgcccctg 43242040
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 256 ggcactgcacttggcggtgattcatcagcatgagcccttcctggatttcctcctgggctt 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43244247 ggcactgcacttggcggtgattcatcagcatgagcccttcctggatttcctcctgggctt 43244188
Query: 316 tgctgctggcactgagtacctggacctgcagaatgacctgggccag 361
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43244187 tgctgctggcactgagtacctggacctgcagaatgacctgggccag 43244142
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 694 aggccacaccccactccacgtggctgtcatccacaaagatgccgagatggtccgactgct 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43242411 aggccacaccccactccacgtggctgtcatccacaaagatgccgagatggtccgactgct 43242352
Query: 754 ccgagaggctggagccgacctcaacaaaccgg 785
||||||||||||||||||||||||||||||||
Sbjct: 43242351 ccgagaggctggagccgacctcaacaaaccgg 43242320
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,786,410
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 5
Length of query: 973
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 952
Effective length of database: 2,808,413,156
Effective search space: 2673609324512
Effective search space used: 2673609324512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)