Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013066
(1050 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030201.2| 39S ribosomal protein L9, mitochondrial [Bos... 323 2e-88
>ref|NP_001030201.2| 39S ribosomal protein L9, mitochondrial [Bos taurus].
Length = 232
Score = 323 bits (828), Expect = 2e-88
Identities = 163/191 (85%), Positives = 171/191 (89%), Gaps = 2/191 (1%)
Frame = +2
Query: 131 GVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNLE 310
G TP SER FSLS SR TVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPK+NLE
Sbjct: 36 GSTPGSERDFSLSHSRGTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKENLE 95
Query: 311 LVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENXXXXXXXXXXRQEGKLEKL 490
L+LTQSV+ELGVRGDLVSVKKSVGRNRLLP+GLAVYASPEN RQEGKL+K+
Sbjct: 96 LILTQSVDELGVRGDLVSVKKSVGRNRLLPEGLAVYASPENKKLFEEEKLLRQEGKLDKI 155
Query: 491 QTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPITQ 670
QTKAGEATVKFLR CHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPITQ
Sbjct: 156 QTKAGEATVKFLRSCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPITQ 215
Query: 671 RGEY--WCEVT 697
RG++ CE T
Sbjct: 216 RGKWTGHCEGT 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,057,012
Number of extensions: 967534
Number of successful extensions: 3456
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3452
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013066
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013066
(1050 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851404.1| PREDICTED: similar to mitochondrial ribosomal p... 388 e-108
>ref|XP_851404.1| PREDICTED: similar to mitochondrial ribosomal protein L9 [Canis
familiaris].
Length = 270
Score = 388 bits (997), Expect = e-108
Identities = 191/233 (81%), Positives = 203/233 (87%)
Frame = +2
Query: 131 GVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNLE 310
G P ER FSLS SR TVIVERWW+VPLAGEGRKPRLHRRHRVY+LVEDTKH P+ LE
Sbjct: 38 GPPPGPERDFSLSHSRGTVIVERWWQVPLAGEGRKPRLHRRHRVYRLVEDTKHGPRGGLE 97
Query: 311 LVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENXXXXXXXXXXRQEGKLEKL 490
L+LT+SVE LGVRGDLVSVKKS+GRNRLLPQGLAVYASPEN RQEGKLEK+
Sbjct: 98 LILTRSVEGLGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLRQEGKLEKI 157
Query: 491 QTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPITQ 670
QT+ GE TVKFLR CHLEVGMKNN+KWELNPEIVARHF +NLGVVVAPHALKLPEEPIT+
Sbjct: 158 QTRTGEMTVKFLRSCHLEVGMKNNIKWELNPEIVARHFFKNLGVVVAPHALKLPEEPITR 217
Query: 671 RGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGNVPTSSQMI 829
GEYWCEVTVNGLDTVRVPMSVV FERPKTKRYKYWLAQQAAKG PT+SQ I
Sbjct: 218 WGEYWCEVTVNGLDTVRVPMSVVKFERPKTKRYKYWLAQQAAKGMAPTNSQTI 270
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,734,779
Number of extensions: 994991
Number of successful extensions: 3310
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3309
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013066
(1050 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355223.1| PREDICTED: 39S ribosomal protein L9, mitocho... 447 e-126
Alignment gi|XP_003355225.1| PREDICTED: 39S ribosomal protein L9, mitocho... 410 e-115
Alignment gi|XP_003355224.1| PREDICTED: 39S ribosomal protein L9, mitocho... 358 2e-99
>ref|XP_003355223.1| PREDICTED: 39S ribosomal protein L9, mitochondrial-like isoform 1
[Sus scrofa].
Length = 268
Score = 447 bits (1150), Expect = e-126
Identities = 223/234 (95%), Positives = 224/234 (95%)
Frame = +2
Query: 128 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 307
EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL
Sbjct: 35 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 94
Query: 308 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENXXXXXXXXXXRQEGKLEK 487
ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPEN RQEGKLEK
Sbjct: 95 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENKKLFEEEKLLRQEGKLEK 154
Query: 488 LQTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT 667
LQTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT
Sbjct: 155 LQTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT 214
Query: 668 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGNVPTSSQMI 829
QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKG+VPTSSQMI
Sbjct: 215 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGDVPTSSQMI 268
>ref|XP_003355225.1| PREDICTED: 39S ribosomal protein L9, mitochondrial-like isoform 3
[Sus scrofa].
Length = 251
Score = 410 bits (1053), Expect = e-115
Identities = 210/234 (89%), Positives = 212/234 (90%)
Frame = +2
Query: 128 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 307
EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL
Sbjct: 35 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 94
Query: 308 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENXXXXXXXXXXRQEGKLEK 487
ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPEN +E KL
Sbjct: 95 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENKKLF-------EEEKL-- 145
Query: 488 LQTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT 667
TVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT
Sbjct: 146 --------TVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT 197
Query: 668 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGNVPTSSQMI 829
QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKG+VPTSSQMI
Sbjct: 198 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGDVPTSSQMI 251
>ref|XP_003355224.1| PREDICTED: 39S ribosomal protein L9, mitochondrial-like isoform 2
[Sus scrofa].
Length = 234
Score = 358 bits (920), Expect = 2e-99
Identities = 189/234 (80%), Positives = 190/234 (81%)
Frame = +2
Query: 128 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 307
EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL
Sbjct: 35 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 94
Query: 308 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENXXXXXXXXXXRQEGKLEK 487
ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPEN RQEGKLEK
Sbjct: 95 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENKKLFEEEKLLRQEGKLEK 154
Query: 488 LQTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT 667
LQTKAGEA LGVVVAPHALKLPEEPIT
Sbjct: 155 LQTKAGEA----------------------------------LGVVVAPHALKLPEEPIT 180
Query: 668 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGNVPTSSQMI 829
QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKG+VPTSSQMI
Sbjct: 181 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGDVPTSSQMI 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,844,775
Number of extensions: 618194
Number of successful extensions: 2150
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2147
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013066
(1050 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084392.1| 39S ribosomal protein L9, mitochondrial precurs... 383 e-106
>ref|NP_084392.1| 39S ribosomal protein L9, mitochondrial precursor [Mus musculus].
Length = 265
Score = 383 bits (984), Expect = e-106
Identities = 190/234 (81%), Positives = 206/234 (88%)
Frame = +2
Query: 128 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 307
EG TP R FSLS +STVIVERWWKVPLAGEGRKP LHRRHRVYKLVEDTKHRPKDNL
Sbjct: 34 EGSTPG--RDFSLSHYQSTVIVERWWKVPLAGEGRKPHLHRRHRVYKLVEDTKHRPKDNL 91
Query: 308 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENXXXXXXXXXXRQEGKLEK 487
EL+LTQSV+E+GVRGDLVSVKKSVGRN+LL QGLAVYASPEN R+EGKLEK
Sbjct: 92 ELILTQSVDEIGVRGDLVSVKKSVGRNKLLSQGLAVYASPENRKLFEEEKSLRREGKLEK 151
Query: 488 LQTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT 667
+QTKAGEATVKFLR CHLEVGMKNNVKWELNPEIVARHF +NLGVVVAPHAL+LPEEPIT
Sbjct: 152 IQTKAGEATVKFLRSCHLEVGMKNNVKWELNPEIVARHFFKNLGVVVAPHALRLPEEPIT 211
Query: 668 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGNVPTSSQMI 829
+ GEYWC+VTVNGLDTVRVPMSVV F++PKTKRYK+WLAQQAAK PT+ Q +
Sbjct: 212 RWGEYWCDVTVNGLDTVRVPMSVVLFQKPKTKRYKHWLAQQAAKSVAPTNPQAV 265
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,256,556
Number of extensions: 826972
Number of successful extensions: 2556
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2550
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013066
(1050 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113608.1| 39S ribosomal protein L9, mitochondrial precurs... 391 e-109
>ref|NP_113608.1| 39S ribosomal protein L9, mitochondrial precursor [Homo sapiens].
Length = 267
Score = 391 bits (1005), Expect = e-109
Identities = 193/233 (82%), Positives = 204/233 (87%)
Frame = +2
Query: 128 EGVTPRSERAFSLSLSRSTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKDNL 307
EG P FSLS +R TVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPK+NL
Sbjct: 35 EGNAPDLACNFSLSQNRGTVIVERWWKVPLAGEGRKPRLHRRHRVYKLVEDTKHRPKENL 94
Query: 308 ELVLTQSVEELGVRGDLVSVKKSVGRNRLLPQGLAVYASPENXXXXXXXXXXRQEGKLEK 487
EL+LTQSVE +GVRGDLVSVKKS+GRNRLLPQGLAVYASPEN RQEGKLEK
Sbjct: 95 ELILTQSVENVGVRGDLVSVKKSLGRNRLLPQGLAVYASPENKKLFEEEKLLRQEGKLEK 154
Query: 488 LQTKAGEATVKFLRRCHLEVGMKNNVKWELNPEIVARHFLRNLGVVVAPHALKLPEEPIT 667
+QTKAGEATVKFL+ C LEVGMKNNVKWELNPEIVARHF +NLGVVVAPH LKLPEEPIT
Sbjct: 155 IQTKAGEATVKFLKSCRLEVGMKNNVKWELNPEIVARHFFKNLGVVVAPHTLKLPEEPIT 214
Query: 668 QRGEYWCEVTVNGLDTVRVPMSVVNFERPKTKRYKYWLAQQAAKGNVPTSSQM 826
+ GEYWCEVTVNGLDTVRVPMSVVNFE+PKTKRYKYWLAQQAAK PTS Q+
Sbjct: 215 RWGEYWCEVTVNGLDTVRVPMSVVNFEKPKTKRYKYWLAQQAAKAMAPTSPQI 267
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,079,463
Number of extensions: 983165
Number of successful extensions: 3311
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3309
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013066
(1050 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 662 0.0
Sscrofa_Chr08 196 2e-47
>Sscrofa_Chr04
|| Length = 143465943
Score = 662 bits (334), Expect = 0.0
Identities = 349/354 (98%)
Strand = Plus / Plus
Query: 697 ggtaaatggacttgacactgtgagggtacctatgtctgtggtgaactttgagaggcccaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106485002 ggtaaatggacttgacactgtgagggtacctatgtctgtggtgaactttgagaggcccaa 106485061
Query: 757 gaccaaaagatacaagtactggttagcccagcaggctgccaagggaaatgtccccaccag 816
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 106485062 gaccaaaagatacaagtactggttagcccagcaggctgccaagggagatgtccccaccag 106485121
Query: 817 ctcccagatgatctgaacctcttctcacctcaaaaacagtgacgcagaatcagaggaatg 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106485122 ctcccagatgatctgaacctcttctcacctcaaaaacagtgacgcagaatcagaggaatg 106485181
Query: 877 gcggagcagaaatgggccagccctgtgatatcactgccagctcttacccagtacggaatt 936
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 106485182 gcggagcagaaatgggccagccctgtgatatcactgccagctcttaccaagtacggaatt 106485241
Query: 937 ttagacagcatgtggggacagtggattagactgtgaattgtccatatttgcagtcttcat 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106485242 ttagacagcatgtggggacagtggattagactgtgaattgtccatatttgcagtcttcat 106485301
Query: 997 cttcagggggtggttatcacatctgaacttatcggggcagtcctactccagaag 1050
|||||| || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 106485302 cttcagtggttggttatcacatctgaccttatcggggcagtcctactccagaag 106485355
Score = 345 bits (174), Expect = 3e-92
Identities = 177/178 (99%)
Strand = Plus / Plus
Query: 1 cagttctccctcggcgtccgcgaccatggcggcggccgcctgcacggccgcgggcggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106471174 cagttctccctcggcgtccgcgaccatggcggcggccgcctgcacggccgcgggcggagg 106471233
Query: 61 tctgctgcgggcaggcattgagcggctgctgcgaggaggagttcgggcgctcctccggcc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106471234 tctgctgcgggcaggccttgagcggctgctgcgaggaggagttcgggcgctcctccggcc 106471293
Query: 121 gcgacttgaaggggtcaccccccgctcggagcgcgccttcagcctctctctcagtcgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106471294 gcgacttgaaggggtcaccccccgctcggagcgcgccttcagcctctctctcagtcgg 106471351
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 178 gagcacggtcattgtggagcgttggtggaaggtgccgctagccggagagggccggaagcc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106471516 gagcacggtcattgtggagcgttggtggaaggtgccgctagccggagagggccggaagcc 106471575
Query: 238 gcgtctgcatcggcgacaccgcgtctacaagctagtggaggacacgaaacatcggcccaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106471576 gcgtctgcatcggcgacaccgcgtctacaagctagtggaggacacgaaacatcggcccaa 106471635
Query: 298 agacaatctggagctcgtcctcacgcagtcggtggaag 335
||||||||||||||||||||||||||||||||||||||
Sbjct: 106471636 agacaatctggagctcgtcctcacgcagtcggtggaag 106471673
Score = 254 bits (128), Expect = 8e-65
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 334 agaacttggagtccgaggtgacctcgtctcagtgaaaaaatctgtgggccgtaatcggct 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106472147 agaacttggagtccgaggtgacctcgtctcagtgaaaaaatctgtgggccgtaatcggct 106472206
Query: 394 acttcctcaaggactggctgtatatgcatctcctgaaaacaagaagctgtttgaagagga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106472207 acttcctcaaggactggctgtatatgcatctcctgaaaacaagaagctgtttgaagagga 106472266
Query: 454 gaaattgctgag 465
||||||| ||||
Sbjct: 106472267 gaaattggtgag 106472278
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 511 gacagtgaaatttctgagaagatgtcacttggaggtagggatgaagaacaatgtcaaatg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106484134 gacagtgaaatttctgagaagatgtcacttggaggtagggatgaagaacaatgtcaaatg 106484193
Query: 571 ggagctaaaccctgaaatagttgcccgccacttcctcagaaat 613
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106484194 ggagctaaaccctgaaatagttgcccgccacttcctcagaaat 106484236
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 614 cttggtgttgtggttgccccacatgcgttaaagttaccagaagagcccatcacacagagg 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106484802 cttggtgttgtggttgccccacatgcgttaaagttaccagaagagcccatcacacagagg 106484861
Query: 674 ggcgagtactggtgtgaggtgacggt 699
||||||||||||||||||||||||||
Sbjct: 106484862 ggcgagtactggtgtgaggtgacggt 106484887
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 460 gctgagacaagagggaaaattagagaaactccagaccaaggcaggtgaggcg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106472492 gctgagacaagagggaaaattagagaaactccagaccaaggcaggtgaggcg 106472543
Score = 87.7 bits (44), Expect = 1e-14
Identities = 110/134 (82%), Gaps = 11/134 (8%)
Strand = Plus / Minus
Query: 928 tacggaattttagacagcatgtggggacagtggattagactgt-----------gaattg 976
|||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct: 85199988 tacggaattttagacagcatgtggagacagtggatgagactgcataaacgtgcagaattg 85199929
Query: 977 tccatatttgcagtcttcatcttcagggggtggttatcacatctgaacttatcggggcag 1036
|| ||||||| ||||||||||||| || |||||||||||||| ||||| |||||||
Sbjct: 85199928 tctgtatttgccatcttcatcttcagtggtcggttatcacatctggccttattggggcag 85199869
Query: 1037 tcctactccagaag 1050
||||||||||||||
Sbjct: 85199868 tcctactccagaag 85199855
Score = 87.7 bits (44), Expect = 1e-14
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 864 aatcagaggaatggcggagcagaaatgggccagccctgtgatatcactgccagctcttac 923
|||||||| | ||| |||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct: 85200356 aatcagagaagtggtggagcagagatgggccagccctgtgatatcagtgccagctctgac 85200297
Query: 924 ccagtacggaatttta 939
| | ||||||||||||
Sbjct: 85200296 caaatacggaatttta 85200281
>Sscrofa_Chr08
|| Length = 148491826
Score = 196 bits (99), Expect = 2e-47
Identities = 254/303 (83%), Gaps = 7/303 (2%)
Strand = Plus / Plus
Query: 394 acttcctcaaggactggctgtatatgcatctcctgaaaacaagaagctgtttgaagagga 453
||||||||||| ||||||| || |||||||||||| || ||||||||||||| ||
Sbjct: 99048897 acttcctcaagtactggctacatctgcatctcctga---catgaagctgtttgaaaag-- 99048951
Query: 454 gaaattgctgagacaagagggaaaattagagaaactccagaccaaggcaggtgaggcgac 513
|||||| |||| ||||| ||| ||||| ||| |||||||||| | |||| ||| |||
Sbjct: 99048952 -aaattgttgaggcaagaaagaagattagtgaagatccagaccaaagtaggtaaggggac 99049010
Query: 514 agtgaaatttctgagaagatgtcacttggaggtagggatgaagaacaatgtcaaatggga 573
|||||||||||| | |||||||||| | ||||| || ||||||||||| ||||||||||
Sbjct: 99049011 agtgaaatttctaaaaagatgtcacctagaggtgtgggtgaagaacaatttcaaatggga 99049070
Query: 574 gctaaaccctgaaatagttgcccgccacttcctcagaaatcttggtgttgtggttgcccc 633
|||||| | ||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct: 99049071 gctaaagc-tgaaatagttgcctgccatttcctcagaaatcttggtgttgtggtcaccct 99049129
Query: 634 acatgcgttaaagttaccagaagagcccatcacacagaggggcgagtactggtgtgaggt 693
||| || || |||||||| ||||||||||| |||||| | || | ||||||||||||||
Sbjct: 99049130 acacgcagtacagttaccaaaagagcccatcccacagaagagcaaatactggtgtgaggt 99049189
Query: 694 gac 696
|||
Sbjct: 99049190 gac 99049192
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,430,312
Number of extensions: 117
Number of successful extensions: 117
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 11
Length of query: 1050
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1029
Effective length of database: 2,808,413,156
Effective search space: 2889857137524
Effective search space used: 2889857137524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)