Animal-Genome cDNA 20110601C-013068

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013068
         (1947 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_541181.1| PREDICTED: similar to T-complex protein 1, alph...  1063   0.0  
Alignment   gi|XP_862675.1| PREDICTED: similar to T-complex protein 1, alph...  1057   0.0  
Alignment   gi|XP_862776.1| PREDICTED: similar to T-complex protein 1, alph...  1050   0.0  
Alignment   gi|XP_862752.1| PREDICTED: similar to T-complex protein 1, alph...  1003   0.0  
Alignment   gi|XP_862725.1| PREDICTED: similar to T-complex protein 1, alph...   818   0.0  
Alignment   gi|XP_862705.1| PREDICTED: similar to T-complex protein 1, alph...   818   0.0  
Alignment   gi|XP_862626.1| PREDICTED: similar to T-complex protein 1, alph...   640   0.0  
Alignment   gi|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta ...   301   1e-81
Alignment   gi|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta ...   301   2e-81
Alignment   gi|XP_852889.1| PREDICTED: similar to T-complex protein 1, eta ...   301   2e-81

>ref|XP_541181.1| PREDICTED: similar to T-complex protein 1, alpha subunit
            (TCP-1-alpha) (CCT-alpha) isoform 1 [Canis familiaris].
          Length = 556

 Score = 1063 bits (2750), Expect = 0.0
 Identities = 549/556 (98%), Positives = 556/556 (100%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLA+K
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTDVRGQPRYPVNS+NILKAHGRSQTES+LI+GYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VETGAMAVRRVLKRDLKRIAKASGAT+LSTLANLEGEETFEASMLGQAEEVVQERICDDE
Sbjct: 301  VETGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 1627
            IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER
Sbjct: 421  IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 480

Query: 1628 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            KNLKWIGLDL+NGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD
Sbjct: 481  KNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540

Query: 1808 KHGGYEDAVHSGALDD 1855
            KHGGYEDAVHSGALDD
Sbjct: 541  KHGGYEDAVHSGALDD 556


>ref|XP_862675.1| PREDICTED: similar to T-complex protein 1, alpha subunit
            (TCP-1-alpha) (CCT-alpha) isoform 4 [Canis familiaris].
          Length = 558

 Score = 1057 bits (2734), Expect = 0.0
 Identities = 548/558 (98%), Positives = 556/558 (99%), Gaps = 2/558 (0%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLA+K
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTDVRGQPRYPVNS+NILKAHGRSQTES+LI+GYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASG--ATILSTLANLEGEETFEASMLGQAEEVVQERICD 1261
            VETGAMAVRRVLKRDLKRIAKASG  +T+LSTLANLEGEETFEASMLGQAEEVVQERICD
Sbjct: 301  VETGAMAVRRVLKRDLKRIAKASGVVSTVLSTLANLEGEETFEASMLGQAEEVVQERICD 360

Query: 1262 DELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAA 1441
            DELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAA
Sbjct: 361  DELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAA 420

Query: 1442 LSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNP 1621
            LSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNP
Sbjct: 421  LSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNP 480

Query: 1622 ERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESK 1801
            ERKNLKWIGLDL+NGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESK
Sbjct: 481  ERKNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESK 540

Query: 1802 DDKHGGYEDAVHSGALDD 1855
            DDKHGGYEDAVHSGALDD
Sbjct: 541  DDKHGGYEDAVHSGALDD 558


>ref|XP_862776.1| PREDICTED: similar to T-complex protein 1, alpha subunit
            (TCP-1-alpha) (CCT-alpha) isoform 8 [Canis familiaris].
          Length = 556

 Score = 1050 bits (2714), Expect = 0.0
 Identities = 543/556 (97%), Positives = 551/556 (99%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLA+K
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTDVRGQPRYPVNS+NILKAHGRSQTES+LI+GYALNC   +  MPKRIVNAKIACLDFS
Sbjct: 181  YTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCEKCNASMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VETGAMAVRRVLKRDLKRIAKASGAT+LSTLANLEGEETFEASMLGQAEEVVQERICDDE
Sbjct: 301  VETGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 1627
            IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER
Sbjct: 421  IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 480

Query: 1628 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            KNLKWIGLDL+NGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD
Sbjct: 481  KNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540

Query: 1808 KHGGYEDAVHSGALDD 1855
            KHGGYEDAVHSGALDD
Sbjct: 541  KHGGYEDAVHSGALDD 556


>ref|XP_862752.1| PREDICTED: similar to T-complex protein 1, alpha subunit
            (TCP-1-alpha) (CCT-alpha) isoform 7 [Canis familiaris].
          Length = 532

 Score = 1003 bits (2594), Expect = 0.0
 Identities = 525/556 (94%), Positives = 532/556 (95%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLA+K
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTDVRGQPRYPVNS+NILKAHGRSQTES+LI+GYALNCVVGSQGMPKRIVNAKI      
Sbjct: 181  YTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKI------ 234

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
                              KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 235  ------------------KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 276

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VETGAMAVRRVLKRDLKRIAKASGAT+LSTLANLEGEETFEASMLGQAEEVVQERICDDE
Sbjct: 277  VETGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 336

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAALS
Sbjct: 337  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 396

Query: 1448 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 1627
            IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER
Sbjct: 397  IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 456

Query: 1628 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            KNLKWIGLDL+NGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD
Sbjct: 457  KNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 516

Query: 1808 KHGGYEDAVHSGALDD 1855
            KHGGYEDAVHSGALDD
Sbjct: 517  KHGGYEDAVHSGALDD 532


>ref|XP_862725.1| PREDICTED: similar to T-complex protein 1, alpha subunit
            (TCP-1-alpha) (CCT-alpha) isoform 6 [Canis familiaris].
          Length = 456

 Score =  818 bits (2114), Expect(2) = 0.0
 Identities = 424/430 (98%), Positives = 430/430 (100%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLA+K
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTDVRGQPRYPVNS+NILKAHGRSQTES+LI+GYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VETGAMAVRRVLKRDLKRIAKASGAT+LSTLANLEGEETFEASMLGQAEEVVQERICDDE
Sbjct: 301  VETGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSM 1477
            IYLENYATSM
Sbjct: 421  IYLENYATSM 430



 Score = 29.6 bits (65), Expect(2) = 0.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 1477 GLPGTACYCRVCKI 1518
            G+ GTACYC +CKI
Sbjct: 438  GVSGTACYCGICKI 451


>ref|XP_862705.1| PREDICTED: similar to T-complex protein 1, alpha subunit
            (TCP-1-alpha) (CCT-alpha) isoform 5 [Canis familiaris].
          Length = 433

 Score =  818 bits (2114), Expect = 0.0
 Identities = 424/430 (98%), Positives = 430/430 (100%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLA+K
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTDVRGQPRYPVNS+NILKAHGRSQTES+LI+GYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDVRGQPRYPVNSVNILKAHGRSQTESLLISGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VETGAMAVRRVLKRDLKRIAKASGAT+LSTLANLEGEETFEASMLGQAEEVVQERICDDE
Sbjct: 301  VETGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSM 1477
            IYLENYATSM
Sbjct: 421  IYLENYATSM 430


>ref|XP_862626.1| PREDICTED: similar to T-complex protein 1, alpha subunit
            (TCP-1-alpha) (CCT-alpha) isoform 3 [Canis familiaris].
          Length = 354

 Score =  640 bits (1651), Expect = 0.0
 Identities = 330/333 (99%), Positives = 333/333 (100%)
 Frame = +2

Query: 857  GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGA 1036
            GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGA
Sbjct: 22   GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGA 81

Query: 1037 NVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAS 1216
            NVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGAT+LSTLANLEGEETFEAS
Sbjct: 82   NVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEAS 141

Query: 1217 MLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVL 1396
            MLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVL
Sbjct: 142  MLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVL 201

Query: 1397 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDL 1576
            ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDL
Sbjct: 202  ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDL 261

Query: 1577 VAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAIT 1756
            VAKLRAFHNEAQVNPERKNLKWIGLDL+NGKPRDNKQAGVFEPTIVKVKSLKFATEAAIT
Sbjct: 262  VAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAIT 321

Query: 1757 ILRIDDLIKLHPESKDDKHGGYEDAVHSGALDD 1855
            ILRIDDLIKLHPESKDDKHGGYEDAVHSGALDD
Sbjct: 322  ILRIDDLIKLHPESKDDKHGGYEDAVHSGALDD 354


>ref|XP_866608.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
            (CCT-eta) (HIV-1 Nef interacting protein) isoform 10
            [Canis familiaris].
          Length = 547

 Score =  301 bits (772), Expect = 1e-81
 Identities = 194/537 (36%), Positives = 292/537 (54%), Gaps = 6/537 (1%)
 Frame = +2

Query: 215  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 394
            D S G      N+ A   IA  V+++LGP G+DK++VD  G  TI+NDGATILKLL+V H
Sbjct: 14   DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 73

Query: 395  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 574
            PAAK L ++A  QD EVGDGTTSV ++AAE LK     V++ +HP  +I  +R A + AV
Sbjct: 74   PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 133

Query: 575  RYISENLIINTDE---LGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 745
              I E  +    E     R  L   A T++SSK+I     FFA MVVDAV+ +       
Sbjct: 134  NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVIML------- 186

Query: 746  QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 916
                 +  I I K  G +  ES L+ G A        G +  PK+  N  IA L+  L+ 
Sbjct: 187  DELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALLNVELEL 246

Query: 917  TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 1096
               K   ++ +   E    I   E +I  +++++I  +GA V+L+   I D+  +YF + 
Sbjct: 247  KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVATQYFADR 306

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
                  RV + DLKR   A G +I +++          A +LG+ +   + +I  +    
Sbjct: 307  DMFCAGRVPEEDLKRTMMACGGSIQTSV------NALSADVLGRCQVFEETQIGGERYNF 360

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
                    + +IILRG  +   +E ERSLHDA+ +VRR +++ SVV GGGA+E  LS YL
Sbjct: 361  FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             +Y+ ++  ++QL I  +A++L +IP  L  NA  D+T+++ KLRA H +      ++  
Sbjct: 421  RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGL----KRGG 476

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
             W G+D+ N    DN +A V+EP +V++ +L  A+EAA  I+ +D+ IK +P S  D
Sbjct: 477  MWYGVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 532


>ref|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
            (CCT-eta) (HIV-1 Nef interacting protein) isoform 1
            [Canis familiaris].
          Length = 543

 Score =  301 bits (770), Expect = 2e-81
 Identities = 194/537 (36%), Positives = 291/537 (54%), Gaps = 6/537 (1%)
 Frame = +2

Query: 215  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 394
            D S G      N+ A   IA  V+++LGP G+DK++VD  G  TI+NDGATILKLL+V H
Sbjct: 14   DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 73

Query: 395  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 574
            PAAK L ++A  QD EVGDGTTSV ++AAE LK     V++ +HP  +I  +R A + AV
Sbjct: 74   PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 133

Query: 575  RYISENLIINTDE---LGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 745
              I E  +    E     R  L   A T++SSK+I     FFA MVVDAV+ +       
Sbjct: 134  NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVIML------- 186

Query: 746  QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 916
                 +  I I K  G +  ES L+ G A        G +  PK+  N  IA L+  L+ 
Sbjct: 187  DELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALLNVELEL 246

Query: 917  TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 1096
               K   ++ +   E    I   E +I  +++++I  +GA V+L+   I D+  +YF + 
Sbjct: 247  KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVATQYFADR 306

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
                  RV + DLKR   A G +I +++          A +LG+ +   + +I  +    
Sbjct: 307  DMFCAGRVPEEDLKRTMMACGGSIQTSV------NALSADVLGRCQVFEETQIGGERYNF 360

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
                    + +IILRG  +   +E ERSLHDA+ +VRR +++ SVV GGGA+E  LS YL
Sbjct: 361  FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             +Y+ ++  ++QL I  +A++L +IP  L  NA  D+T+++ KLRA H +  +       
Sbjct: 421  RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM------- 473

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
             W G+D+ N    DN +A V+EP +V++ +L  A+EAA  I+ +D+ IK +P S  D
Sbjct: 474  -WYGVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 528


>ref|XP_852889.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
            (CCT-eta) (HIV-1 Nef interacting protein) isoform 2
            [Canis familiaris].
          Length = 543

 Score =  301 bits (770), Expect = 2e-81
 Identities = 194/537 (36%), Positives = 291/537 (54%), Gaps = 6/537 (1%)
 Frame = +2

Query: 215  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 394
            D S G      N+ A   IA  V+++LGP G+DK++VD  G  TI+NDGATILKLL+V H
Sbjct: 14   DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 73

Query: 395  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 574
            PAAK L ++A  QD EVGDGTTSV ++AAE LK     V++ +HP  +I  +R A + AV
Sbjct: 74   PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 133

Query: 575  RYISENLIINTDE---LGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 745
              I E  +    E     R  L   A T++SSK+I     FFA MVVDAV+ +       
Sbjct: 134  NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVIML------- 186

Query: 746  QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 916
                 +  I I K  G +  ES L+ G A        G +  PK+  N  IA L+  L+ 
Sbjct: 187  DELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMIALLNVELEL 246

Query: 917  TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 1096
               K   ++ +   E    I   E +I  +++++I  +GA V+L+   I D+  +YF + 
Sbjct: 247  KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGDVATQYFADR 306

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
                  RV + DLKR   A G +I +++          A +LG+ +   + +I  +    
Sbjct: 307  DMFCAGRVPEEDLKRTMMACGGSIQTSV------NALSADVLGRCQVFEETQIGGERYNF 360

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
                    + +IILRG  +   +E ERSLHDA+ +VRR +++ SVV GGGA+E  LS YL
Sbjct: 361  FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             +Y+ ++  ++QL I  +A++L +IP  L  NA  D+T+++ KLRA H +  +       
Sbjct: 421  RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM------- 473

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
             W G+D+ N    DN +A V+EP +V++ +L  A+EAA  I+ +D+ IK +P S  D
Sbjct: 474  -WYGVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 528


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,684,123
Number of extensions: 1780933
Number of successful extensions: 6279
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 6136
Number of HSP's successfully gapped: 66
Length of query: 649
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 540
Effective length of database: 15,240,880
Effective search space: 8230075200
Effective search space used: 8230075200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013068
         (1947 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru...  1056   0.0  
Alignment   gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].     299   5e-81
Alignment   gi|NP_001017934.2| T-complex protein 1 subunit gamma [Bos tauru...   293   3e-79
Alignment   gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].    291   1e-78
Alignment   gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru...   287   3e-77
Alignment   gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil...   272   7e-73
Alignment   gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun...   272   7e-73
Alignment   gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun...   272   7e-73
Alignment   gi|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].    248   2e-65
Alignment   gi|NP_001028781.1| T-complex protein 1 subunit theta [Bos tauru...   246   5e-65

>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
          Length = 556

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 545/555 (98%), Positives = 552/555 (99%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSK+IGINGDFFAN+VVDAVLAIK
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTD+RGQPRYPVNSIN+LKAHGRSQ ESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VE GAMAVRRVLKRDLKRIAKASGAT+LSTLANLEGEETFEASMLGQAEEVVQERICDDE
Sbjct: 301  VEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSAS+ILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 1627
            IYLENYATSMGSREQLAIAEFARSL VIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER
Sbjct: 421  IYLENYATSMGSREQLAIAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 480

Query: 1628 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD
Sbjct: 481  KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540

Query: 1808 KHGGYEDAVHSGALD 1852
            KHGGYEDAVHSGALD
Sbjct: 541  KHGGYEDAVHSGALD 555


>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
          Length = 543

 Score =  299 bits (766), Expect = 5e-81
 Identities = 194/537 (36%), Positives = 291/537 (54%), Gaps = 6/537 (1%)
 Frame = +2

Query: 215  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 394
            D S G      N+ A   IA  V+++LGP G+DK++VD  G  TI+NDGATILKLL+V H
Sbjct: 14   DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 73

Query: 395  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 574
            PAAK L ++A  QD EVGDGTTSV ++AAE LK     V++ +HP  +I  +R A + AV
Sbjct: 74   PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 133

Query: 575  RYISENLIINTDE---LGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 745
              I E  +    E     R  L   A T++SSK+I     FFA MVVDAV+ +       
Sbjct: 134  NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML------- 186

Query: 746  QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 916
                 +  I I K  G +  ES L+ G A        G +  PK+  N  IA L+  L+ 
Sbjct: 187  DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL 246

Query: 917  TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 1096
               K   ++ +   E    I   E +I  ++++KI  +GA V+L+   I D+  +YF + 
Sbjct: 247  KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADR 306

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
                  RV + DLKR   A G +I +++  L  +      +LG+ +   + +I  +    
Sbjct: 307  DMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSD------VLGRCQVFEETQIGGERYNF 360

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
                    + +IILRG  +   +E ERSLHDA+ +VRR +++ SVV GGGA+E  LS YL
Sbjct: 361  FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             +Y+ ++  ++QL I  +A++L +IP  L  NA  D+T+++ KLRA H +  +       
Sbjct: 421  RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM------- 473

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
             W G+D+      DN +A V+EP +V++ +L  A+EAA  I+ +D+ IK +P S  D
Sbjct: 474  -WYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 528


>ref|NP_001017934.2| T-complex protein 1 subunit gamma [Bos taurus].
          Length = 545

 Score =  293 bits (751), Expect = 3e-79
 Identities = 184/541 (34%), Positives = 298/541 (55%), Gaps = 3/541 (0%)
 Frame = +2

Query: 218  RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 397
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 16   RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 75

Query: 398  AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 577
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR A  + + 
Sbjct: 76   AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 135

Query: 578  YISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRY 757
             + + + I  D   RD ++N   +S+++K+I        N+ +DAV  +++ +  G+   
Sbjct: 136  TL-KKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEE-NGRKEI 193

Query: 758  PVNS-INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 934
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 194  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 253

Query: 935  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVR 1114
              + IT  E   +I Q E +  ++  + I+    +V++T  GI D+   Y +     A+R
Sbjct: 254  TDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIR 313

Query: 1115 RVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKA 1294
            RV K D  RIA+A GA I+S    L  E+    + L +      ++I D+    I   K 
Sbjct: 314  RVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEI-----KKIGDEYFTFITECKD 368

Query: 1295 RTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATS 1474
              + +I+LRGA+  +  E+ER+L DA+ V R VL    +VPGGGA E A++  L   + +
Sbjct: 369  PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKA 428

Query: 1475 MGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLD 1654
            M   EQ      A++L VIP TL  N    +  L+  LRA H +       +N +  G++
Sbjct: 429  MTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ENCETWGVN 481

Query: 1655 LVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD--KHGGYED 1828
               G   D K+ G++EP  VK+++ K A E A+ +LRIDD++  H +  DD  + GG  D
Sbjct: 482  GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPD 541

Query: 1829 A 1831
            A
Sbjct: 542  A 542


>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
          Length = 535

 Score =  291 bits (746), Expect = 1e-78
 Identities = 191/547 (34%), Positives = 306/547 (55%), Gaps = 8/547 (1%)
 Frame = +2

Query: 197  PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 361
            P+++F    D    E  R  + + A +I ++VKS+LGP G+DK+L+    D +  +TNDG
Sbjct: 8    PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 67

Query: 362  ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 541
            ATILK + V++PAAKVL +++ +QD EVGDGTTSV ++AAELL+ A+ L+ +KIHP ++I
Sbjct: 68   ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127

Query: 542  SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 715
            +G+R A K A + +  + + + +DE+  R  L+N A T++SSK++  + D F  + V+AV
Sbjct: 128  AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 187

Query: 716  LAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIAC 895
            L +K +         + +I+++K  G S  +S L  G+ L+  +G    PKRI NAKI  
Sbjct: 188  LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 239

Query: 896  LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 1072
             +  +   K+K+ G +V +    K+ +I   E +  KE++++IL  G N  +    I + 
Sbjct: 240  ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 299

Query: 1073 CLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQER 1252
              + F   G MA+       ++R+A  +G  I ST       +  E   LG  + + +  
Sbjct: 300  PEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTF------DHPELVKLGSCKLIEEVM 353

Query: 1253 ICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAV 1432
            I +D+LI         + +I+LRGA   + DE ERSLHDALCV+ + ++    V GGG  
Sbjct: 354  IGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCS 413

Query: 1433 EAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQ 1612
            E  ++  +   A+    +E +A+  +A++L ++P  +A NA  DS DLVA+LRA H+E +
Sbjct: 414  EMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGK 473

Query: 1613 VNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 1792
                       GLD+  G   D    G+ E   VK + L  A EAA  ILR+D++IK  P
Sbjct: 474  TT--------AGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 525

Query: 1793 ESKDDKH 1813
              +   H
Sbjct: 526  RKRVPDH 532


>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
          Length = 542

 Score =  287 bits (734), Expect = 3e-77
 Identities = 182/535 (34%), Positives = 300/535 (56%), Gaps = 9/535 (1%)
 Frame = +2

Query: 203  SVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLL 382
            S + DR     IR  N+ AA ++A+ +++SLGP G+DKM+ D  GDVTITNDGATILK +
Sbjct: 25   SAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQM 84

Query: 383  EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 562
            +V HPAA++L EL+  QD E GDGTTSVVIIA  LL +  +L+++ IHPT +   ++ A 
Sbjct: 85   QVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKAL 144

Query: 563  KEAVRYISENLIINTDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDV 739
            ++ +  +++  +   +EL  R+ L+N+A TS++SK++       + M VDAV+  K  D 
Sbjct: 145  EKGIEILTD--MSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVM--KVIDP 200

Query: 740  RGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKT 919
                   +  I I+K  G +  +  L+ G  L   V + G+  R+  AKI  + F L   
Sbjct: 201  ATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGI-TRVEKAKIGLIQFCLSAP 259

Query: 920  KMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKY 1084
            K  +  Q+V++D  ++D++ + E       +++I  TG NV+L    I      D+ L +
Sbjct: 260  KTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHF 319

Query: 1085 FVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDD 1264
              +   M V+ + + D++ I K  G   ++ +      + F A MLG A E+ +E   + 
Sbjct: 320  LNKMKIMVVKDIEREDIEFICKTIGTKPVAHV------DQFTADMLGSA-ELAEEVSLNG 372

Query: 1265 ELILIKNTKART---SASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVE 1435
               LIK T   +   + +I++RG+N  + +E ERS+HDALCV+R +++ ++++ GGGA E
Sbjct: 373  SGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPE 432

Query: 1436 AALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQV 1615
              L++ L  Y+ ++   E   I  FA ++ VIP+TLA NA  +    V +LR  H + + 
Sbjct: 433  IELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE- 491

Query: 1616 NPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 1780
                   K  G+++  G   +  +  V +P +V V +L  ATE   +IL+IDD++
Sbjct: 492  -------KTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVV 539


>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
          Length = 541

 Score =  272 bits (696), Expect = 7e-73
 Identities = 175/524 (33%), Positives = 289/524 (55%), Gaps = 6/524 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            EA++S ++MAA ++AN +K+SLGP GLDKM+VD  GDVT+TNDGATIL +++V+H  AK+
Sbjct: 32   EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 90

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 580
            + EL+  QD E+GDGTT VV++A  LL+ A++L+ + IHP  +  GY  A + A+ +   
Sbjct: 91   MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDK 150

Query: 581  ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYP 760
            IS+++++  D    + LI  AKT++ SK++       A + V+AVL +     R      
Sbjct: 151  ISDSVLV--DMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV---- 204

Query: 761  VNSINILKAHGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 931
                 ++K  G+      ++ LI G  ++       MPK++ +AKIA L    +  K K 
Sbjct: 205  --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 262

Query: 932  GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 1111
              ++ +T  E    +++ E +  +E I++I  TGAN+ +   G DD      ++    AV
Sbjct: 263  KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNDLPAV 322

Query: 1112 RRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 1291
            R V   +++ IA A+G  I+   + L  E+   A ++ +    +      D++++I+  K
Sbjct: 323  RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKE----ISFGTTKDKMLVIEQCK 378

Query: 1292 ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 1471
               + +I +RG N  + +E +RSLHDALCV+R ++    VV GGGA E + ++ +   A 
Sbjct: 379  NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD 438

Query: 1472 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 1651
               + EQ A+  FA +L VIP  LA N+  +    + ++RA     +VNP       +G+
Sbjct: 439  KCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEVNPA------LGI 491

Query: 1652 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            D ++    D K   V E  I K + +  AT+    IL+IDD+ K
Sbjct: 492  DCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535


>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
            taurus].
          Length = 541

 Score =  272 bits (696), Expect = 7e-73
 Identities = 175/524 (33%), Positives = 289/524 (55%), Gaps = 6/524 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            EA++S ++MAA ++AN +K+SLGP GLDKM+VD  GDVT+TNDGATIL +++V+H  AK+
Sbjct: 32   EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 90

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 580
            + EL+  QD E+GDGTT VV++A  LL+ A++L+ + IHP  +  GY  A + A+ +   
Sbjct: 91   MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDK 150

Query: 581  ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYP 760
            IS+++++  D    + LI  AKT++ SK++       A + V+AVL +     R      
Sbjct: 151  ISDSVLV--DMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV---- 204

Query: 761  VNSINILKAHGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 931
                 ++K  G+      ++ LI G  ++       MPK++ +AKIA L    +  K K 
Sbjct: 205  --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 262

Query: 932  GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 1111
              ++ +T  E    +++ E +  +E I++I  TGAN+ +   G DD      ++    AV
Sbjct: 263  KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNDLPAV 322

Query: 1112 RRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 1291
            R V   +++ IA A+G  I+   + L  E+   A ++ +    +      D++++I+  K
Sbjct: 323  RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKE----ISFGTTKDKMLVIEQCK 378

Query: 1292 ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 1471
               + +I +RG N  + +E +RSLHDALCV+R ++    VV GGGA E + ++ +   A 
Sbjct: 379  NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD 438

Query: 1472 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 1651
               + EQ A+  FA +L VIP  LA N+  +    + ++RA     +VNP       +G+
Sbjct: 439  KCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEVNPA------LGI 491

Query: 1652 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            D ++    D K   V E  I K + +  AT+    IL+IDD+ K
Sbjct: 492  DCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535


>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
            taurus].
          Length = 541

 Score =  272 bits (696), Expect = 7e-73
 Identities = 175/524 (33%), Positives = 289/524 (55%), Gaps = 6/524 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            EA++S ++MAA ++AN +K+SLGP GLDKM+VD  GDVT+TNDGATIL +++V+H  AK+
Sbjct: 32   EALKS-HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 90

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 580
            + EL+  QD E+GDGTT VV++A  LL+ A++L+ + IHP  +  GY  A + A+ +   
Sbjct: 91   MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDK 150

Query: 581  ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYP 760
            IS+++++  D    + LI  AKT++ SK++       A + V+AVL +     R      
Sbjct: 151  ISDSVLV--DMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV---- 204

Query: 761  VNSINILKAHGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 931
                 ++K  G+      ++ LI G  ++       MPK++ +AKIA L    +  K K 
Sbjct: 205  --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 262

Query: 932  GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 1111
              ++ +T  E    +++ E +  +E I++I  TGAN+ +   G DD      ++    AV
Sbjct: 263  KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNDLPAV 322

Query: 1112 RRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 1291
            R V   +++ IA A+G  I+   + L  E+   A ++ +    +      D++++I+  K
Sbjct: 323  RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKE----ISFGTTKDKMLVIEQCK 378

Query: 1292 ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 1471
               + +I +RG N  + +E +RSLHDALCV+R ++    VV GGGA E + ++ +   A 
Sbjct: 379  NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD 438

Query: 1472 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 1651
               + EQ A+  FA +L VIP  LA N+  +    + ++RA     +VNP       +G+
Sbjct: 439  KCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRA-RQVKEVNPA------LGI 491

Query: 1652 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            D ++    D K   V E  I K + +  AT+    IL+IDD+ K
Sbjct: 492  DCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535


>ref|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].
          Length = 531

 Score =  248 bits (632), Expect = 2e-65
 Identities = 152/527 (28%), Positives = 284/527 (53%), Gaps = 9/527 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            +A  + N+ AA  + ++++++LGP G  KMLV   GD+ +T DG  +L  ++++HP A +
Sbjct: 17   QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASL 76

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE 589
            + ++A  QD   GDGTTS V+I  ELLK AD  + + +HP  +  G+  A ++A++++ +
Sbjct: 77   IAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQ 136

Query: 590  NLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNS 769
              +  + E+ R+ LI+ A+TS+ +K+     D     VVD++LAIK  D   +P   +  
Sbjct: 137  VKV--SKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQD---EP-IDLFM 190

Query: 770  INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVI 949
            + I++   +S+T++ LI G  L+       M KR+ +A I   + SL+  K ++      
Sbjct: 191  VEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFY 250

Query: 950  TDPEKLDQIRQRESDITKERIQKIL---------ATGANVILTTGGIDDMCLKYFVETGA 1102
               E+ +++ + E    ++R++KI+         +    V++   GID   L    + G 
Sbjct: 251  KSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGI 310

Query: 1103 MAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIK 1282
            +A+RR  +R+++R+  A G   L++L +L  +       LG A  V +  + +++   I+
Sbjct: 311  IALRRAKRRNMERLTLACGGIALNSLDDLNPD------CLGHAGLVYEYTLGEEKFTFIE 364

Query: 1283 NTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLEN 1462
                  S +++++G N     +++ ++ D L  V+  ++   VVPG GAVE A++  L  
Sbjct: 365  KCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVK 424

Query: 1463 YATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKW 1642
            Y  S+  R QL +  FA +LL+IP  LA N+  D  + + K++A H+E+         + 
Sbjct: 425  YKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESG--------QL 476

Query: 1643 IGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            +G+DL  G+P    +AG+++   VK + L   T  A  IL +D++++
Sbjct: 477  VGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 523


>ref|NP_001028781.1| T-complex protein 1 subunit theta [Bos taurus].
          Length = 548

 Score =  246 bits (628), Expect = 5e-65
 Identities = 165/532 (31%), Positives = 280/532 (52%), Gaps = 4/532 (0%)
 Frame = +2

Query: 245  QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 424
            +N+ A   +A   +++ GP G++KM+++ +  + +TND ATIL+ LEV+HPAAK++   +
Sbjct: 31   RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 90

Query: 425  DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 604
             +Q++EVGDGT  V++ A  LL+ A+EL++  +  + VI GY +ACK+A   + + +  +
Sbjct: 91   HMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCS 150

Query: 605  TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINIL 781
               L   D + +   TS+ SK  G N  F A ++  A ++I + D      + V++I + 
Sbjct: 151  AKNLRDVDEVSSLLHTSVMSKQYG-NEVFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 205

Query: 782  KAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 961
            K  G     S +++G        ++G    + +AKIA           +    V+I   E
Sbjct: 206  KILGSGVHSSSVLHGMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAE 263

Query: 962  KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 1141
            +L    + E ++   +++ I  TGANV++T G + DM L Y  +   M VR   K DL+R
Sbjct: 264  ELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRR 323

Query: 1142 IAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 1318
            + K  GAT L  L     EE      +G  + V    + D ++++ K+ K   + S I+L
Sbjct: 324  LCKTVGATALPRLNPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 377

Query: 1319 RGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 1498
            RG+ D + D++ER++ D +   + +   K +VPGGGA E  L+  + +Y  +    EQ A
Sbjct: 378  RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 437

Query: 1499 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKP-- 1672
            I +FA +   IP  LA N+   + ++++KL A H E   N        +GLD+    P  
Sbjct: 438  IKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 489

Query: 1673 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGGYED 1828
            +D  +AGV +  + K  ++K AT AA+T+LR+D +I   P        G +D
Sbjct: 490  KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKD 541


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,596,145
Number of extensions: 1726013
Number of successful extensions: 5554
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 5497
Number of HSP's successfully gapped: 21
Length of query: 649
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 540
Effective length of database: 14,074,782
Effective search space: 7600382280
Effective search space used: 7600382280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013068
         (1947 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof...  1069   0.0  
Alignment   gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].     301   1e-81
Alignment   gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].    291   9e-79
Alignment   gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma...   291   1e-78
Alignment   gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta...   282   4e-76
Alignment   gi|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma...   266   3e-71
Alignment   gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil...   248   9e-66
Alignment   gi|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-...   246   3e-65
Alignment   gi|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta...   245   6e-65
Alignment   gi|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta...   245   6e-65

>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
          Length = 556

 Score = 1069 bits (2765), Expect = 0.0
 Identities = 556/556 (100%), Positives = 556/556 (100%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK
Sbjct: 121  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE
Sbjct: 301  VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 1627
            IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER
Sbjct: 421  IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 480

Query: 1628 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD
Sbjct: 481  KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540

Query: 1808 KHGGYEDAVHSGALDD 1855
            KHGGYEDAVHSGALDD
Sbjct: 541  KHGGYEDAVHSGALDD 556


>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
          Length = 543

 Score =  301 bits (770), Expect = 1e-81
 Identities = 194/537 (36%), Positives = 291/537 (54%), Gaps = 6/537 (1%)
 Frame = +2

Query: 215  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 394
            D S G      N+ A   IA  V+++LGP G+DK++VD  G  TI+NDGATILKLL+V H
Sbjct: 14   DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 73

Query: 395  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 574
            PAAK L ++A  QD EVGDGTTSV ++AAE LK     V++ +HP  +I  +R A + AV
Sbjct: 74   PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 133

Query: 575  RYISENLIINTDE---LGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 745
              I E  +    E     R  L   A T++SSK+I     FFA MVVDAV+ +       
Sbjct: 134  NKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML------- 186

Query: 746  QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 916
                 +  I I K  G +  ES L+ G A        G +  PK+  N  IA L+  L+ 
Sbjct: 187  DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELEL 246

Query: 917  TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 1096
               K   ++ +   E    I   E +I  +++++I  +GA V+L+   I D+  +YF + 
Sbjct: 247  KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGDVATQYFADR 306

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
                  RV + DLKR   A G +I +++  L  +      +LG+ +   + +I  +    
Sbjct: 307  DMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSD------VLGRCQVFEETQIGGERYNF 360

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
                    + +IILRG  +   +E ERSLHDA+ +VRR +++ SVV GGGA+E  LS YL
Sbjct: 361  FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             +Y+ ++  ++QL I  +A++L +IP  L  NA  D+T+++ KLRA H +          
Sbjct: 421  RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGT------- 473

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
             W G+D+ N    DN +A V+EP +V++ +L  A+EAA  I+ +D+ IK +P S  D
Sbjct: 474  -WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 528


>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
          Length = 535

 Score =  291 bits (745), Expect = 9e-79
 Identities = 191/547 (34%), Positives = 304/547 (55%), Gaps = 8/547 (1%)
 Frame = +2

Query: 197  PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 361
            P+++F    D    E  R  + + A +I ++VKS+LGP G+DK+L+    D +  +TNDG
Sbjct: 8    PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 67

Query: 362  ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 541
            ATILK + V++PAAKVL +++ +QD EVGDGTTSV ++AAELL+ A+ L+ +KIHP ++I
Sbjct: 68   ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127

Query: 542  SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 715
            +G+R A K A + +  + + + +DE+  R  L+N A T++SSK++  + D F  + V+AV
Sbjct: 128  AGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 187

Query: 716  LAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIAC 895
            L +K +         + +I+++K  G S  +S L  G+ L+  +G    PKRI NAKI  
Sbjct: 188  LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 239

Query: 896  LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 1072
             +  +   K+K+ G +V +    K+ +I   E +  KE++++IL  G N  +    I + 
Sbjct: 240  ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 299

Query: 1073 CLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQER 1252
              + F   G MA+       ++R+A  +G  I ST       +  E   LG  + + +  
Sbjct: 300  PEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTF------DHPELVKLGSCKLIEEVM 353

Query: 1253 ICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAV 1432
            I +D+LI         + +I+LRGA   + DE ERSLHDALCV+ + ++    V GGG  
Sbjct: 354  IGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCS 413

Query: 1433 EAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQ 1612
            E  ++  +   A     +E +A+  +A++L ++P  +A NA  DS DLVA+LRA H+E  
Sbjct: 414  EMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGN 473

Query: 1613 VNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 1792
                       GLD+  G   D    G+ E   VK + L  A EAA  ILR+D++IK  P
Sbjct: 474  TT--------AGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 525

Query: 1793 ESKDDKH 1813
              +   H
Sbjct: 526  RKRVPDH 532


>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
          Length = 545

 Score =  291 bits (744), Expect = 1e-78
 Identities = 183/542 (33%), Positives = 299/542 (55%), Gaps = 4/542 (0%)
 Frame = +2

Query: 218  RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 397
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 16   RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 75

Query: 398  AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 577
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR A  + + 
Sbjct: 76   AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 135

Query: 578  YISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRY 757
             + + +    D   RD ++N   +S+++K+I        N+ +DAV  +++ +  G+   
Sbjct: 136  TL-KKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEE-NGRKEI 193

Query: 758  PVNS-INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 934
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 194  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 253

Query: 935  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVR 1114
              + IT  E   +I Q E +  ++  + I+    +V++T  GI D+   Y +     A+R
Sbjct: 254  TDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIR 313

Query: 1115 RVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQ-ERICDDELILIKNTK 1291
            RV K D  RIA+A GA I+S    L  E+      +G    +++ ++I D+    I   K
Sbjct: 314  RVRKTDNNRIARACGARIVSRPEELREED------IGTGAGLLEIKKIGDEYFTFITECK 367

Query: 1292 ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 1471
               + +I+LRGA+  +  E+ER+L DA+ V R VL    +VPGGGA E A++  L   + 
Sbjct: 368  DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSK 427

Query: 1472 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 1651
            +M   EQ      A++L VIP TL  N    +  L+  LRA H +       +N +  G+
Sbjct: 428  AMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ENCETWGV 480

Query: 1652 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD--KHGGYE 1825
            +   G   D K+ G++EP  VK+++ K A E A+ +LRIDD++  H +  DD  + GG  
Sbjct: 481  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAP 540

Query: 1826 DA 1831
            DA
Sbjct: 541  DA 542


>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
          Length = 539

 Score =  282 bits (722), Expect = 4e-76
 Identities = 177/534 (33%), Positives = 298/534 (55%), Gaps = 8/534 (1%)
 Frame = +2

Query: 203  SVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLL 382
            S + DR     IR  N+ AA ++A+ +++SLGP G+DKM+ D  GDVTITNDGATILK +
Sbjct: 22   SAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQM 81

Query: 383  EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 562
            +V HPAA++L EL+  QD E GDGTTSVVIIA  LL +  +L+++ IHPT +   ++ A 
Sbjct: 82   QVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKAL 141

Query: 563  KEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVR 742
            ++ +  +++ +    +   RD L+N+A TS++SK++       + M V+AV+  K  D  
Sbjct: 142  EKGIEILTD-MSRPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVM--KVIDPA 198

Query: 743  GQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTK 922
                  +  I I+K  G +  +  L+ G  L   V + G+  R+  AKI  + F L   K
Sbjct: 199  TATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGI-TRVEKAKIGLIQFCLSAPK 257

Query: 923  MKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYF 1087
              +  Q+V++D  ++D++ + E       +++I  TG NV+L    I      D+ L + 
Sbjct: 258  TDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFL 317

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
             +   M V+ + + D++ I K  G   ++ +      + F A MLG A E+ +E   +  
Sbjct: 318  NKMKIMVVKDIEREDIEFICKTIGTKPVAHI------DQFTADMLGSA-ELAEEVNLNGS 370

Query: 1268 LILIKNTKART---SASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEA 1438
              ++K T   +   + +I++RG+N  + +E ERS+HDALCV+R +++ ++++ GGGA E 
Sbjct: 371  GKMLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEI 430

Query: 1439 ALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVN 1618
             L++ L  Y+ ++   E   +  FA ++ VIP+TLA NA  +    V +LR  H + +  
Sbjct: 431  ELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE-- 488

Query: 1619 PERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 1780
                  K  G+++  G   +  +  V +P +V V +L  ATE   +IL+IDD++
Sbjct: 489  ------KTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVV 536


>ref|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma isoform 3 [Sus scrofa].
          Length = 500

 Score =  266 bits (680), Expect = 3e-71
 Identities = 171/510 (33%), Positives = 277/510 (54%), Gaps = 4/510 (0%)
 Frame = +2

Query: 314  KMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLK 493
            KML+D +G + +TNDG  IL+ ++V+HPAAK + E++  QD+EVGDGTTSV+I+A E+L 
Sbjct: 3    KMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLS 62

Query: 494  NADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIG 673
             A+  ++Q++HPT VIS YR A  + +  + + +    D   RD ++N   +S+++K+I 
Sbjct: 63   VAEHFLEQQMHPTVVISAYRKALDDMISTL-KKISTPVDTNNRDMMLNIINSSITTKVIS 121

Query: 674  INGDFFANMVVDAVLAIKYTDVRGQPRYPVNS-INILKAHGRSQTESMLINGYALNCVVG 850
                   N+ +DAV  +++ +  G+    +     + K  G    +S ++ G  +N  V 
Sbjct: 122  RWSSLACNIALDAVKTVQFEE-NGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT 180

Query: 851  SQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILAT 1030
               M + I N +I  LD SL+  K +    + IT  E   +I Q E +  ++  + I+  
Sbjct: 181  HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHL 240

Query: 1031 GANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFE 1210
              +V++T  GI D+   Y +     A+RRV K D  RIA+A GA I+S    L  E+   
Sbjct: 241  KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREED--- 297

Query: 1211 ASMLGQAEEVVQ-ERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVR 1387
               +G    +++ ++I D+    I   K   + +I+LRGA+  +  E+ER+L DA+ V R
Sbjct: 298  ---IGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCR 354

Query: 1388 RVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDS 1567
             VL    +VPGGGA E A++  L   + +M   EQ      A++L VIP TL  N    +
Sbjct: 355  NVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGAST 414

Query: 1568 TDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEA 1747
              L+  LRA H +       +N +  G++   G   D K+ G++EP  VK+++ K A E 
Sbjct: 415  IRLLTSLRAKHTQ-------ENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVET 467

Query: 1748 AITILRIDDLIKLHPESKDD--KHGGYEDA 1831
            A+ +LRIDD++  H +  DD  + GG  DA
Sbjct: 468  AVLLLRIDDIVSGHKKKGDDQSRQGGAPDA 497


>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
          Length = 487

 Score =  248 bits (633), Expect = 9e-66
 Identities = 161/515 (31%), Positives = 269/515 (52%), Gaps = 3/515 (0%)
 Frame = +2

Query: 248  NVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAD 427
            ++MAA ++AN +K+SLGP GLDKM+VD  GDVT+TNDGATIL +++V+H  AK++ EL+ 
Sbjct: 2    HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSK 61

Query: 428  LQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINT 607
             QD E+GDGTT VV++A  LL+ A++L+ + IHP  +  GY  A + A+ ++        
Sbjct: 62   SQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLD------- 114

Query: 608  DELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINILKA 787
                         T++ SK++       A + V+AVL +     R           ++K 
Sbjct: 115  -----------XXTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV------DFELIKV 157

Query: 788  HGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDP 958
             G+      ++ LI G  ++       MPK++ +AKIA L    +  K K   ++ +T  
Sbjct: 158  EGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSV 217

Query: 959  EKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLK 1138
            E    +++ E +  +E I++I  TGAN+ +   G DD      ++    AVR V   +++
Sbjct: 218  EDYKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 277

Query: 1139 RIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASIIL 1318
             IA A+G  I+   + L  E+   A ++ +    +      D++++I+  K   + +I +
Sbjct: 278  LIAIATGGRIVPRFSELTPEKLGFAGLVKE----ISFGTTKDKMLVIEQCKNSRAVTIFI 333

Query: 1319 RGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 1498
            RG N  + +E +RSLHDALCV+R ++    VV GGGA E A ++ +   A  +   ++  
Sbjct: 334  RGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKVKRGDRXX 393

Query: 1499 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRD 1678
                  +L VIP  LA N+  +    + ++RA     ++NP       +G+D ++    D
Sbjct: 394  XXXXXXALEVIPMALAENSGMNPIQTMTEVRA-RQVKEMNPA------LGIDCLHKGTND 446

Query: 1679 NKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
             KQ  V E  I K + +  AT+    IL+IDD+ K
Sbjct: 447  MKQQHVIETLIGKKQQISLATQMVRMILKIDDIRK 481


>ref|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Sus
            scrofa].
          Length = 531

 Score =  246 bits (628), Expect = 3e-65
 Identities = 152/527 (28%), Positives = 283/527 (53%), Gaps = 9/527 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            +A  + N+ AA  + ++++++LGP G  KMLV   GD+ +T DG  +L  ++++HP A +
Sbjct: 17   QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASL 76

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE 589
            + ++A  QD   GDGTTS V+I  ELLK AD  + + +HP  +  G+  A ++A++++ +
Sbjct: 77   IAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQ 136

Query: 590  NLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNS 769
              +  + E+ R+ LI+ A+TS+ +K+     D     VVD+VLAIK  D   +P   +  
Sbjct: 137  VKV--SKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSVLAIKKQD---EP-IDLFM 190

Query: 770  INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVI 949
            + I++   +S+T++ LI G  L+       M KR+ +A I   + SL+  K ++      
Sbjct: 191  VEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFY 250

Query: 950  TDPEKLDQIRQRESDITKERIQKIL---------ATGANVILTTGGIDDMCLKYFVETGA 1102
               E+ +++ + E    ++R++KI+         +    V++   GID   L    + G 
Sbjct: 251  KSAEEREKLVRAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGI 310

Query: 1103 MAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIK 1282
            +A+RR  +R+++R+  A G   L++L +L  +       LG A  V +  + +++   I+
Sbjct: 311  VALRRAKRRNMERLTLACGGVALNSLDDLNPD------CLGHAGLVYEYTLGEEKFTFIE 364

Query: 1283 NTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLEN 1462
                  S +++++G N     +++ ++ D L  V+  ++   VVPG GAVE A++  L  
Sbjct: 365  KCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIK 424

Query: 1463 YATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKW 1642
            Y  S+  R QL +  FA +LL+IP  LA N+  D  + + K++A H+E+         + 
Sbjct: 425  YKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESG--------QL 476

Query: 1643 IGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            +G+DL  G+P    + G+++   VK + L   T  A  IL +D++++
Sbjct: 477  VGVDLNTGEPMVAAEVGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 523


>ref|XP_003358949.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 3 [Sus
            scrofa].
          Length = 529

 Score =  245 bits (626), Expect = 6e-65
 Identities = 164/532 (30%), Positives = 281/532 (52%), Gaps = 4/532 (0%)
 Frame = +2

Query: 245  QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 424
            +N+ A   +A   +++ GP G++KM+++ +  + +TND ATIL+ LEV+HPAAK++   +
Sbjct: 12   RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 71

Query: 425  DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 604
             +Q++EVGDGT  V++ A  LL+ A+EL++  +  + VI GY +AC++A   + + +  +
Sbjct: 72   HMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 131

Query: 605  TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINIL 781
               L   D + +   TS+ SK  G N  F A ++  A ++I + D      + V++I + 
Sbjct: 132  AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 186

Query: 782  KAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 961
            K  G     S +++G        ++G    + +AKIA           +    V+I   E
Sbjct: 187  KILGSGVHSSSVLHGMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 244

Query: 962  KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 1141
            +L    + E ++ + +++ I  TGANV++T G + DM L Y  +   M VR   K DL+R
Sbjct: 245  ELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 304

Query: 1142 IAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 1318
            + K  GAT L  L     EE      +G  + V    + D ++++ K+ K   + S I+L
Sbjct: 305  LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 358

Query: 1319 RGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 1498
            RG+ D + D++ER++ D +   + +   K +VPGGGA E  L+  + +Y  +    EQ A
Sbjct: 359  RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 418

Query: 1499 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKP-- 1672
            I +FA +   IP  LA N+   + ++++KL A H E   N        +GLD+    P  
Sbjct: 419  IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 470

Query: 1673 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGGYED 1828
            +D  +AGV +  + K  ++K AT AA+T+LR+D +I   P        G +D
Sbjct: 471  KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKD 522


>ref|XP_003358948.1| PREDICTED: t-complex protein 1 subunit theta-like isoform 2 [Sus
            scrofa].
          Length = 557

 Score =  245 bits (626), Expect = 6e-65
 Identities = 164/532 (30%), Positives = 281/532 (52%), Gaps = 4/532 (0%)
 Frame = +2

Query: 245  QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 424
            +N+ A   +A   +++ GP G++KM+++ +  + +TND ATIL+ LEV+HPAAK++   +
Sbjct: 40   RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 99

Query: 425  DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 604
             +Q++EVGDGT  V++ A  LL+ A+EL++  +  + VI GY +AC++A   + + +  +
Sbjct: 100  HMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPDLVCCS 159

Query: 605  TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINIL 781
               L   D + +   TS+ SK  G N  F A ++  A ++I + D      + V++I + 
Sbjct: 160  AKNLRDVDEVSSLLHTSVMSKQYG-NEAFLAKLIAQACVSI-FPD---SGHFNVDNIRVC 214

Query: 782  KAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 961
            K  G     S +++G        ++G    + +AKIA           +    V+I   E
Sbjct: 215  KILGSGVHSSSVLHGMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 272

Query: 962  KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 1141
            +L    + E ++ + +++ I  TGANV++T G + DM L Y  +   M VR   K DL+R
Sbjct: 273  ELMNFSKGEENLMEAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRR 332

Query: 1142 IAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 1318
            + K  GAT L  L     EE      +G  + V    + D ++++ K+ K   + S I+L
Sbjct: 333  LCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 386

Query: 1319 RGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 1498
            RG+ D + D++ER++ D +   + +   K +VPGGGA E  L+  + +Y  +    EQ A
Sbjct: 387  RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 446

Query: 1499 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKP-- 1672
            I +FA +   IP  LA N+   + ++++KL A H E   N        +GLD+    P  
Sbjct: 447  IKKFAEAFESIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPAV 498

Query: 1673 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGGYED 1828
            +D  +AGV +  + K  ++K AT AA+T+LR+D +I   P        G +D
Sbjct: 499  KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKD 550


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,104,441
Number of extensions: 1104323
Number of successful extensions: 3530
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3475
Number of HSP's successfully gapped: 19
Length of query: 649
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 544
Effective length of database: 8,729,747
Effective search space: 4748982368
Effective search space used: 4748982368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013068
         (1947 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].   1038   0.0  
Alignment   gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].      304   2e-82
Alignment   gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].     292   6e-79
Alignment   gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu...   283   3e-76
Alignment   gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].    283   3e-76
Alignment   gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].    280   2e-75
Alignment   gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul...   269   7e-72
Alignment   gi|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].     246   6e-65
Alignment   gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].    244   1e-64
Alignment   gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu...   240   3e-63

>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
          Length = 556

 Score = 1038 bits (2684), Expect = 0.0
 Identities = 536/556 (96%), Positives = 547/556 (98%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGEA+RSQNVMAAASIANIVKSS GPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYI+ENLIINTDELGRDCLINAAKTSMSSKIIGINGD+FANMVVDAVLA+K
Sbjct: 121  YRLACKEAVRYINENLIINTDELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTD RGQPRYPVNS+NILKAHGRSQ ESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDARGQPRYPVNSVNILKAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM LKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VE GAMAVRRVLKRDLK +AKASGA+ILSTLANLEGEETFE +MLGQAEEVVQERICDDE
Sbjct: 301  VEAGAMAVRRVLKRDLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLE KSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 1627
            IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER
Sbjct: 421  IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 480

Query: 1628 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            KNLKWIGLDLV+GKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD
Sbjct: 481  KNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540

Query: 1808 KHGGYEDAVHSGALDD 1855
            KHG YE+AVHSGALDD
Sbjct: 541  KHGSYENAVHSGALDD 556


>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
          Length = 544

 Score =  304 bits (778), Expect = 2e-82
 Identities = 198/537 (36%), Positives = 294/537 (54%), Gaps = 6/537 (1%)
 Frame = +2

Query: 215  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 394
            D S G      N+ A   IA  V+++LGP G+DK++VD  G  TI+NDGATILKLL+V H
Sbjct: 14   DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 73

Query: 395  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 574
            PAAK L ++A  QD EVGDGTTSV ++AAE LK     V++ +HP  +I  +R A + AV
Sbjct: 74   PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 133

Query: 575  RYISENLII--NTDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 745
              I E  +     D++  R  L   A T++SSK+I     FFA MVVDAV+ +       
Sbjct: 134  NKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMML------- 186

Query: 746  QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 916
                 +  I I K  G +  ES L+ G A        G +  PK+  N KIA L+  L+ 
Sbjct: 187  DELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELEL 246

Query: 917  TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 1096
               K   ++ +   E    I   E +I  ++++KI  +GA VIL+   I D+  +YF + 
Sbjct: 247  KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQYFADR 306

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
                  RV + DLKR   A G +I +++  L  +      +LG  +   + +I  +    
Sbjct: 307  DMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPD------VLGHCQVFEETQIGGERYNF 360

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
                    + +IILRG  +   +E ERSLHDA+ +VRR +++ SVV GGGA+E  LS YL
Sbjct: 361  FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             +Y+ ++  ++QL I  +A++L +IP  L  NA  D+T+++ KLRA H +  +       
Sbjct: 421  RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM------- 473

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
             W G+D+ N    DN QA V+EP +V++ +L  A+EAA  I+ +D+ IK +P S  D
Sbjct: 474  -WYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 528


>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
          Length = 535

 Score =  292 bits (748), Expect = 6e-79
 Identities = 191/547 (34%), Positives = 300/547 (54%), Gaps = 8/547 (1%)
 Frame = +2

Query: 197  PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 361
            P+++F    D    E  R  + + A +I ++VKS+LGP G+DK+L+    D    +TNDG
Sbjct: 8    PVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDG 67

Query: 362  ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 541
            ATILK + V++PAAKVL +++ +QD EVGDGTTSV ++AAELL+ A+ L+ +KIHP ++I
Sbjct: 68   ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127

Query: 542  SGYRLACKEAVRYISENLIINTDELGR--DCLINAAKTSMSSKIIGINGDFFANMVVDAV 715
            SG+R A K A   +  + + +  +  R    L+N A T++SSK++  + D F  + V+AV
Sbjct: 128  SGWREATKAAREALLSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 187

Query: 716  LAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIAC 895
            L +K +         + +I+++K  G S  +S L  G+ L+  +G    PKRI NAKI  
Sbjct: 188  LRLKGSG-------NLEAIHVIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 239

Query: 896  LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 1072
             +  +   K+K+ G +V +    K+ +I   E +  KE++++IL  G N  +    I + 
Sbjct: 240  ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 299

Query: 1073 CLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQER 1252
              + F   G MA+       ++R+A  +G  I ST       +  E   LG  + + +  
Sbjct: 300  PEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTF------DHPELVKLGSCKLIEEVM 353

Query: 1253 ICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAV 1432
            I +D+LI         + +I+LRGA   + DE ERSLHDALCV+ + ++    V GGG  
Sbjct: 354  IGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCS 413

Query: 1433 EAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQ 1612
            E  ++  +   A     +E +A+  FA++L ++P  +A NA  DS DLVA+LRA H+E  
Sbjct: 414  EMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGH 473

Query: 1613 VNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 1792
            +          GLD+  G   D    G+ E   VK + L  A EAA  ILR+D++IK  P
Sbjct: 474  IT--------AGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 525

Query: 1793 ESKDDKH 1813
              +   H
Sbjct: 526  RKRVPDH 532


>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
          Length = 545

 Score =  283 bits (725), Expect = 3e-76
 Identities = 175/533 (32%), Positives = 295/533 (55%), Gaps = 1/533 (0%)
 Frame = +2

Query: 218  RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 397
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 16   RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 75

Query: 398  AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 577
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR+A  + + 
Sbjct: 76   AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMIS 135

Query: 578  YISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRY 757
             + + +    D   R+ +++   +S+++K+I        N+ +DAV  +++ +  G+   
Sbjct: 136  TL-KKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEE-NGRKEI 193

Query: 758  PVNS-INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 934
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 194  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 253

Query: 935  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVR 1114
              + IT  E   +I Q E +   +  + I+    +V++T  GI D+   Y +     A+R
Sbjct: 254  TDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIR 313

Query: 1115 RVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKA 1294
            RV K D  RIA+A GA I+S    L  ++    + L +      ++I D+    I + K 
Sbjct: 314  RVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEI-----KKIGDEYFTFITDCKD 368

Query: 1295 RTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATS 1474
              + +I+LRGA+  +  E+ER+L DA+ V R VL    +VPGGGA E A++  L   + +
Sbjct: 369  PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKA 428

Query: 1475 MGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLD 1654
            M   EQ      A++L VIP TL  N    +  L+  LRA H +       ++ +  G++
Sbjct: 429  MTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ESCETWGVN 481

Query: 1655 LVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKH 1813
               G   D K+ G++EP  VK+++ K A E A+ +LRIDD++  H +  DD++
Sbjct: 482  GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQN 534


>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
          Length = 545

 Score =  283 bits (725), Expect = 3e-76
 Identities = 175/533 (32%), Positives = 295/533 (55%), Gaps = 1/533 (0%)
 Frame = +2

Query: 218  RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 397
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 16   RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 75

Query: 398  AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 577
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR+A  + + 
Sbjct: 76   AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMIS 135

Query: 578  YISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRY 757
             + + +    D   R+ +++   +S+++K+I        N+ +DAV  +++ +  G+   
Sbjct: 136  TL-KKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEE-NGRKEI 193

Query: 758  PVNS-INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 934
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 194  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 253

Query: 935  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVR 1114
              + IT  E   +I Q E +   +  + I+    +V++T  GI D+   Y +     A+R
Sbjct: 254  TDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIR 313

Query: 1115 RVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKA 1294
            RV K D  RIA+A GA I+S    L  ++    + L +      ++I D+    I + K 
Sbjct: 314  RVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEI-----KKIGDEYFTFITDCKD 368

Query: 1295 RTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATS 1474
              + +I+LRGA+  +  E+ER+L DA+ V R VL    +VPGGGA E A++  L   + +
Sbjct: 369  PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKA 428

Query: 1475 MGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLD 1654
            M   EQ      A++L VIP TL  N    +  L+  LRA H +       ++ +  G++
Sbjct: 429  MTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ESCETWGVN 481

Query: 1655 LVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKH 1813
               G   D K+ G++EP  VK+++ K A E A+ +LRIDD++  H +  DD++
Sbjct: 482  GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQN 534


>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
          Length = 539

 Score =  280 bits (717), Expect = 2e-75
 Identities = 178/534 (33%), Positives = 296/534 (55%), Gaps = 8/534 (1%)
 Frame = +2

Query: 203  SVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLL 382
            S + DR     IR  N+ AA ++A+ +++SLGP G+DKM+ D  GDVTITNDGATILK +
Sbjct: 22   SAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQM 81

Query: 383  EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 562
            +V HPAA++L EL+  QD E GDGTTSVVIIA  LL +  +L+++ IHPT +   ++ A 
Sbjct: 82   QVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKAL 141

Query: 563  KEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVR 742
            ++ +  +++ +        R+ L+N+A TS++SK++       + M V+AV+  K  D  
Sbjct: 142  EKGLEILTD-MSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVM--KVIDPA 198

Query: 743  GQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTK 922
                  +  I I+K  G +  +  L+ G  L   V + G+  R+  AKI  + F L   K
Sbjct: 199  TATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGI-TRVEKAKIGLIQFCLSAPK 257

Query: 923  MKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYF 1087
              +  Q+V++D  ++D++ + E       +++I  TG NV+L    I      D+ L + 
Sbjct: 258  TDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFL 317

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
             +   M V+ V + D++ I K  G   ++ +      + F A MLG A E+ +E   +  
Sbjct: 318  NKMKIMVVKDVEREDIEFICKTIGTKPVAHI------DQFTADMLGSA-ELAEEVSLNGS 370

Query: 1268 LILIKNTKART---SASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEA 1438
              L K T   +   + +I++RG+N  + +E ERS+HDALCV+R +++ ++++ GGGA E 
Sbjct: 371  GKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEI 430

Query: 1439 ALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVN 1618
             L++ L  Y+ ++   E   +  FA ++ VIP+TLA NA  +    V +LR  H + +  
Sbjct: 431  ELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE-- 488

Query: 1619 PERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 1780
                  K  G+++  G   +  +  V +P +V V +L  ATE   +IL+IDD++
Sbjct: 489  ------KTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVV 536


>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
          Length = 541

 Score =  269 bits (687), Expect = 7e-72
 Identities = 173/524 (33%), Positives = 291/524 (55%), Gaps = 6/524 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            EA++S ++MAA ++AN +++SLGP GLDKM+VD  GDVTITNDGATIL +++V+H  AK+
Sbjct: 32   EALKS-HIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKL 90

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 580
            + EL+  QD E+GDGTT VV++A  LL+ A++L+ + IHP  +  GY  A + A+++   
Sbjct: 91   MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDK 150

Query: 581  ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYP 760
            IS+ ++++ +    + LI  AKT++ SK+I       A + V+AVL +   + R      
Sbjct: 151  ISDKVLVDIN--NPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTVADMERRDV---- 204

Query: 761  VNSINILKAHGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 931
                 ++K  G+      ++ LI G  ++       MPK++V+AKIA L    +  K K 
Sbjct: 205  --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKT 262

Query: 932  GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 1111
              ++ +   E    +++ E +  +E I++I  TGAN+ +   G DD      ++ G  AV
Sbjct: 263  KHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLPAV 322

Query: 1112 RRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 1291
            R V   +++ IA A+G  I+   + L  E+   A ++    + +      D++++I+  K
Sbjct: 323  RWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVV----QEISFGTTKDKMLVIEKCK 378

Query: 1292 ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 1471
               + +I +RG N  + +E +RSLHDALCV+R ++    VV GGGA E + ++ +   A 
Sbjct: 379  NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD 438

Query: 1472 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 1651
               + EQ A+  FA +L VIP  L+ N+  +    + ++RA     + NP       +G+
Sbjct: 439  KCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRA-RQVKESNPA------LGI 491

Query: 1652 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            D ++    D +   V E  I K + +  AT+    IL+IDD+ K
Sbjct: 492  DCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535


>ref|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].
          Length = 531

 Score =  246 bits (627), Expect = 6e-65
 Identities = 152/527 (28%), Positives = 282/527 (53%), Gaps = 9/527 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            +A  + N+ AA  + ++++++LGP G  KMLV   GD+ +T DG  +L  ++++HP A +
Sbjct: 17   QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASL 76

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE 589
            + ++A  QD   GDGTTS V+I  ELLK AD  + + +HP  +  G+  A ++A++++ +
Sbjct: 77   IAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQ 136

Query: 590  NLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNS 769
              +  + E+ R+ LI+ A+TS+ +K+     D     VVD++LAI+  D   +P   +  
Sbjct: 137  VKV--SKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIRKKD---EP-IDLFM 190

Query: 770  INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVI 949
            + I++   +S+T++ LI G  L+       M KR+ NA I   + SL+  K ++      
Sbjct: 191  VEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNVSLEYEKTEVNSGFFY 250

Query: 950  TDPEKLDQIRQRESDITKERIQKIL---------ATGANVILTTGGIDDMCLKYFVETGA 1102
               E+ +++ + E    ++R++KI+         +    V++   GID   L    + G 
Sbjct: 251  KSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGI 310

Query: 1103 MAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIK 1282
            +A+RR  +R+++R+  A G   L++  +L  +       LG A  V +  + +++   I+
Sbjct: 311  VALRRAKRRNMERLTLACGGIALNSFDDLNPD------CLGHAGLVYEYTLGEEKFTFIE 364

Query: 1283 NTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLEN 1462
                  S +++++G N     +++ ++ D L  V+  ++   VVPG GAVE AL+  L  
Sbjct: 365  KCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIK 424

Query: 1463 YATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKW 1642
            Y  S+  R QL +  FA +LL+IP  LA N+  D  + + K++A H+E+         + 
Sbjct: 425  YKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESG--------QL 476

Query: 1643 IGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            +G+DL  G+P    + GV++   VK + L   T  A  IL +D++++
Sbjct: 477  VGVDLSTGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDEIMR 523


>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
          Length = 548

 Score =  244 bits (624), Expect = 1e-64
 Identities = 163/532 (30%), Positives = 281/532 (52%), Gaps = 4/532 (0%)
 Frame = +2

Query: 245  QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 424
            +N+ A   +A   +++ GP G++KM+++ +  + +TND ATIL+ LEV+HPAAK++   +
Sbjct: 31   RNIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAATILRELEVQHPAAKMIVMAS 90

Query: 425  DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 604
             +Q++EVGDGT  V++ A  LL+ A+EL++  +  + VISGY +ACK+A   + E +  +
Sbjct: 91   HMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCS 150

Query: 605  TDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINIL 781
               L   D + +  +TS+ SK  G +  F A ++  A ++I + D      + V++I + 
Sbjct: 151  AKNLRDVDEVSSLLRTSIMSKQYG-SETFLAKLIAQACVSI-FPD---SGNFNVDNIRVC 205

Query: 782  KAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPE 961
            K  G     S +++G        ++G    + +AKIA           +    V+I   E
Sbjct: 206  KILGSGIYSSSVLHGMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAE 263

Query: 962  KLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKR 1141
            +L    + E ++   +++ I  TGANVI+T G + D+ L Y  +   M VR   K DL+R
Sbjct: 264  ELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKVADIALHYANKYNIMLVRLNSKWDLRR 323

Query: 1142 IAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-IIL 1318
            + K  GAT L  L     EE      +G  + V    + D ++++ K+ K   + S I+L
Sbjct: 324  LCKTVGATALPKLTPPVQEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVL 377

Query: 1319 RGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLA 1498
            RG+ D + D++ER++ D +   + +   K +VPGGGA E  L+  + +Y  +    EQ A
Sbjct: 378  RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYA 437

Query: 1499 IAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKP-- 1672
            I +FA +   IP  LA N+   + ++++KL + H E   N        +GLD+    P  
Sbjct: 438  IKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKN--------VGLDIEAEVPAV 489

Query: 1673 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGGYED 1828
            +D  +A + +  + K  ++K AT AA+T+LR+D +I   P        G +D
Sbjct: 490  KDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKD 541


>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
          Length = 531

 Score =  240 bits (613), Expect = 3e-63
 Identities = 155/537 (28%), Positives = 281/537 (52%), Gaps = 11/537 (2%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            +A  + N+ AA  + ++++ +LGP G  KMLV   GD+ +T DG  +L  ++++HP A +
Sbjct: 17   QAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASI 76

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISE 589
            + ++A  QD   GDGTTS V+I  ELLK AD  + + +HP  +  G+ +A  +A+  + E
Sbjct: 77   IAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDE 136

Query: 590  NLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVN- 766
              I    E+ R+ L++ A+TS+ +K+     D     VVD+VLAI+      +P  P++ 
Sbjct: 137  --IKVQKEMKREILLDVARTSLQTKVHAELADILTEAVVDSVLAIR------RPGVPIDL 188

Query: 767  -SINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQV 943
              + I++   +S+T++ LI G  L+       M K++ +A I   + SL+  K ++    
Sbjct: 189  FMVEIVEMRHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGF 248

Query: 944  VITDPEKLDQIRQRESDITKERIQKIL---------ATGANVILTTGGIDDMCLKYFVET 1096
                 E+ +++ + E    ++R+QKI+         +    V++   GID + L+   + 
Sbjct: 249  FYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAKH 308

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
              +A+RR  +R+L+R+  A G   +++   L  E       LG A  V +  + +++   
Sbjct: 309  NIVALRRAKRRNLERLTLACGGLAVNSFEGLSEE------CLGHAGLVFEYALGEEKFTF 362

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
            I++     S +++++G N     +++ +L D L  V+  +E   VVPG GAVE A++  L
Sbjct: 363  IEDCVNPLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEAL 422

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             NY   +  R +L I  FA +LL+IP  LA N+  D  + + K++  H E++        
Sbjct: 423  VNYKHRVQGRVRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHAESK-------- 474

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            + +G+DL  G+P    +AG+++   VK   L   T  A  IL +D++++    S  D
Sbjct: 475  ELLGIDLNTGEPMAAAEAGIWDNYCVKKHLLHSCTVIATNILLVDEIMRAGMSSLRD 531


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,897,731
Number of extensions: 1491669
Number of successful extensions: 4717
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4675
Number of HSP's successfully gapped: 12
Length of query: 649
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 541
Effective length of database: 12,373,671
Effective search space: 6694156011
Effective search space used: 6694156011
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013068
         (1947 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho...  1050   0.0  
Alignment   gi|NP_001008897.1| T-complex protein 1 subunit alpha isoform b ...   759   0.0  
Alignment   gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo...   301   1e-81
Alignment   gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom...   290   3e-78
Alignment   gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho...   287   2e-77
Alignment   gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H...   283   3e-76
Alignment   gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].    280   4e-75
Alignment   gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie...   273   3e-73
Alignment   gi|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [...   266   5e-71
Alignment   gi|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens].    247   3e-65

>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
          Length = 556

 Score = 1050 bits (2716), Expect = 0.0
 Identities = 543/556 (97%), Positives = 551/556 (99%)
 Frame = +2

Query: 188  MEGPLSVFGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 367
            MEGPLSVFGDRSTGE IRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT
Sbjct: 1    MEGPLSVFGDRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGAT 60

Query: 368  ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 547
            ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG
Sbjct: 61   ILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISG 120

Query: 548  YRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 727
            YRLACKEAVRYI+ENLI+NTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK
Sbjct: 121  YRLACKEAVRYINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIK 180

Query: 728  YTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFS 907
            YTD+RGQPRYPVNS+NILKAHGRSQ ESMLI+GYALNCVVGSQGMPKRIVNAKIACLDFS
Sbjct: 181  YTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFS 240

Query: 908  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 1087
            LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF
Sbjct: 241  LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYF 300

Query: 1088 VETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDE 1267
            VE GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEA+MLGQAEEVVQERICDDE
Sbjct: 301  VEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDE 360

Query: 1268 LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALS 1447
            LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVV+RVLESKSVVPGGGAVEAALS
Sbjct: 361  LILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 420

Query: 1448 IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 1627
            IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER
Sbjct: 421  IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPER 480

Query: 1628 KNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
            KNLKWIGLDL NGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD
Sbjct: 481  KNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540

Query: 1808 KHGGYEDAVHSGALDD 1855
            KHG YEDAVHSGAL+D
Sbjct: 541  KHGSYEDAVHSGALND 556


>ref|NP_001008897.1| T-complex protein 1 subunit alpha isoform b [Homo sapiens].
          Length = 401

 Score =  759 bits (1960), Expect = 0.0
 Identities = 391/401 (97%), Positives = 397/401 (99%)
 Frame = +2

Query: 653  MSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYA 832
            MSSKIIGINGDFFANMVVDAVLAIKYTD+RGQPRYPVNS+NILKAHGRSQ ESMLI+GYA
Sbjct: 1    MSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYA 60

Query: 833  LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI 1012
            LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI
Sbjct: 61   LNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERI 120

Query: 1013 QKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLE 1192
            QKILATGANVILTTGGIDDMCLKYFVE GAMAVRRVLKRDLKRIAKASGATILSTLANLE
Sbjct: 121  QKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLE 180

Query: 1193 GEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA 1372
            GEETFEA+MLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA
Sbjct: 181  GEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA 240

Query: 1373 LCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN 1552
            LCVV+RVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN
Sbjct: 241  LCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN 300

Query: 1553 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLK 1732
            AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDL NGKPRDNKQAGVFEPTIVKVKSLK
Sbjct: 301  AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLK 360

Query: 1733 FATEAAITILRIDDLIKLHPESKDDKHGGYEDAVHSGALDD 1855
            FATEAAITILRIDDLIKLHPESKDDKHG YEDAVHSGAL+D
Sbjct: 361  FATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSGALND 401


>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
          Length = 543

 Score =  301 bits (772), Expect = 1e-81
 Identities = 194/537 (36%), Positives = 292/537 (54%), Gaps = 6/537 (1%)
 Frame = +2

Query: 215  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 394
            D S G      N+ A   IA  V+++LGP G+DK++VD  G  TI+NDGATILKLL+V H
Sbjct: 14   DSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVH 73

Query: 395  PAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAV 574
            PAAK L ++A  QD EVGDGTTSV ++AAE LK     V++ +HP  +I  +R A + AV
Sbjct: 74   PAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAV 133

Query: 575  RYISENLII--NTDEL-GRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRG 745
              I E  +     D++  R  L   A T++SSK+I     FFA MVVDAV+ +       
Sbjct: 134  NKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML------- 186

Query: 746  QPRYPVNSINILKAHGRSQTESMLINGYALN---CVVGSQGMPKRIVNAKIACLDFSLQK 916
                 +  I I K  G +  +S L+ G A        G +  PK+  N KIA L+  L+ 
Sbjct: 187  DDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELEL 246

Query: 917  TKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVET 1096
               K   ++ +   E    I   E +I  ++++KI  +GA V+L+   I D+  +YF + 
Sbjct: 247  KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADR 306

Query: 1097 GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELIL 1276
                  RV + DLKR   A G +I +++          A +LG+ +   + +I  +    
Sbjct: 307  DMFCAGRVPEEDLKRTMMACGGSIQTSV------NALSADVLGRCQVFEETQIGGERYNF 360

Query: 1277 IKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYL 1456
                    + + ILRG  +   +E ERSLHDA+ +VRR +++ SVV GGGA+E  LS YL
Sbjct: 361  FTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 1457 ENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 1636
             +Y+ ++  ++QL I  +A++L +IP  L  NA  D+T+++ KLRA H +          
Sbjct: 421  RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGT------- 473

Query: 1637 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 1807
             W G+D+ N    DN +A V+EP +V++ +L  A+EAA  I+ +D+ IK +P S  D
Sbjct: 474  -WYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 528


>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
          Length = 535

 Score =  290 bits (742), Expect = 3e-78
 Identities = 192/547 (35%), Positives = 303/547 (55%), Gaps = 8/547 (1%)
 Frame = +2

Query: 197  PLSVF---GDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVT--ITNDG 361
            P+++F    D    E  R  + + A +I ++VKS+LGP G+DK+L+    D +  +TNDG
Sbjct: 8    PVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDG 67

Query: 362  ATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVI 541
            ATILK + V++PAAKVL +++ +QD EVGDGTTSV ++AAELL+ A+ L+ +KIHP ++I
Sbjct: 68   ATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTII 127

Query: 542  SGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSMSSKIIGINGDFFANMVVDAV 715
            +G+R A K A   +  + + + +DE+  R  L+N A T++SSK++  + D F  + V+AV
Sbjct: 128  AGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAV 187

Query: 716  LAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIAC 895
            L +K +         + +I+I+K  G S  +S L  G+ L+  +G    PKRI NAKI  
Sbjct: 188  LRLKGSG-------NLEAIHIIKKLGGSLADSYLDEGFLLDKKIG-VNQPKRIENAKILI 239

Query: 896  LDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 1072
             +  +   K+K+ G +V +    K+ +I   E +  KE++++IL  G N  +    I + 
Sbjct: 240  ANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 299

Query: 1073 CLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQER 1252
              + F   G MA+       ++R+A  +G  I ST       +  E   LG  + + +  
Sbjct: 300  PEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTF------DHPELVKLGSCKLIEEVM 353

Query: 1253 ICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAV 1432
            I +D+LI         + +I+LRGA   + DE ERSLHDALCV+ + ++    V GGG  
Sbjct: 354  IGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCS 413

Query: 1433 EAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQ 1612
            E  ++  +   A     +E +A+  +A++L ++P  +A NA  DS DLVA+LRA H+E  
Sbjct: 414  EMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGN 473

Query: 1613 VNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHP 1792
                       GLD+  G   D    G+ E   VK + L  A EAA  ILR+D++IK  P
Sbjct: 474  TT--------AGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 525

Query: 1793 ESKDDKH 1813
              +   H
Sbjct: 526  RKRVPDH 532


>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
          Length = 545

 Score =  287 bits (735), Expect = 2e-77
 Identities = 182/541 (33%), Positives = 297/541 (54%), Gaps = 3/541 (0%)
 Frame = +2

Query: 218  RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 397
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 16   RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 75

Query: 398  AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 577
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR A  + + 
Sbjct: 76   AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 135

Query: 578  YISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRY 757
             + + + I  D    D ++N   +S+++K I        N+ +DAV  +++ +  G+   
Sbjct: 136  TL-KKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEE-NGRKEI 193

Query: 758  PVNS-INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 934
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 194  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 253

Query: 935  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVR 1114
              + IT  E   +I Q E +  ++  + I+    +V++T  GI D+   Y +     A+R
Sbjct: 254  TDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIR 313

Query: 1115 RVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKA 1294
            RV K D  RIA+A GA I+S    L  ++    + L +      ++I D+    I + K 
Sbjct: 314  RVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEI-----KKIGDEYFTFITDCKD 368

Query: 1295 RTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATS 1474
              + +I+LRGA+  +  E+ER+L DA+ V R VL    +VPGGGA E A++  L   + +
Sbjct: 369  PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKA 428

Query: 1475 MGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLD 1654
            M   EQ      A++L VIP TL  N    +  L+  LRA H +       +N +  G++
Sbjct: 429  MTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ENCETWGVN 481

Query: 1655 LVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD--KHGGYED 1828
               G   D K+ G++EP  VK+++ K A E A+ +LRIDD++  H +  DD  + GG  D
Sbjct: 482  GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPD 541

Query: 1829 A 1831
            A
Sbjct: 542  A 542


>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
          Length = 499

 Score =  283 bits (725), Expect = 3e-76
 Identities = 182/506 (35%), Positives = 276/506 (54%), Gaps = 6/506 (1%)
 Frame = +2

Query: 308  LDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAEL 487
            +DK++VD  G  TI+NDGATILKLL+V HPAAK L ++A  QD EVGDGTTSV ++AAE 
Sbjct: 1    MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 60

Query: 488  LKNADELVKQKIHPTSVISGYRLACKEAVRYISENLII--NTDEL-GRDCLINAAKTSMS 658
            LK     V++ +HP  +I  +R A + AV  I E  +     D++  R  L   A T++S
Sbjct: 61   LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALS 120

Query: 659  SKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYALN 838
            SK+I     FFA MVVDAV+ +            +  I I K  G +  +S L+ G A  
Sbjct: 121  SKLISQQKAFFAKMVVDAVMML-------DDLLQLKMIGIKKVQGGALEDSQLVAGVAFK 173

Query: 839  ---CVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKER 1009
                  G +  PK+  N KIA L+  L+    K   ++ +   E    I   E +I  ++
Sbjct: 174  KTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDK 233

Query: 1010 IQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANL 1189
            ++KI  +GA V+L+   I D+  +YF +       RV + DLKR   A G +I +++   
Sbjct: 234  LEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSV--- 290

Query: 1190 EGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHD 1369
                   A +LG+ +   + +I  +            + + ILRG  +   +E ERSLHD
Sbjct: 291  ---NALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHD 347

Query: 1370 ALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAV 1549
            A+ +VRR +++ SVV GGGA+E  LS YL +Y+ ++  ++QL I  +A++L +IP  L  
Sbjct: 348  AIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCD 407

Query: 1550 NAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSL 1729
            NA  D+T+++ KLRA H +           W G+D+ N    DN +A V+EP +V++ +L
Sbjct: 408  NAGFDATNILNKLRARHAQGGT--------WYGVDINNEDIADNFEAFVWEPAMVRINAL 459

Query: 1730 KFATEAAITILRIDDLIKLHPESKDD 1807
              A+EAA  I+ +D+ IK +P S  D
Sbjct: 460  TAASEAACLIVSVDETIK-NPRSTVD 484


>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
          Length = 539

 Score =  280 bits (715), Expect = 4e-75
 Identities = 175/532 (32%), Positives = 297/532 (55%), Gaps = 8/532 (1%)
 Frame = +2

Query: 209  FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEV 388
            + DR     IR  N+ AA ++A+ +++SLGP G+DKM+ D  GDVTITNDGATILK ++V
Sbjct: 24   YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQV 83

Query: 389  EHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKE 568
             HPAA++L EL+  QD E GDGTTSVVIIA  LL +  +L+++ IHPT +   ++ A ++
Sbjct: 84   LHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143

Query: 569  AVRYISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQ 748
             +  +++ +    +   R+ L+N+A TS++SK++       + M V+AV+  K  D    
Sbjct: 144  GIEILTD-MSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVM--KVIDPATA 200

Query: 749  PRYPVNSINILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMK 928
                +  I I+K  G +  +  L+ G  L   V + G+  R+  AKI  + F L   K  
Sbjct: 201  TSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVSNSGI-TRVEKAKIGLIQFCLSAPKTD 259

Query: 929  LGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGI-----DDMCLKYFVE 1093
            +  Q+V++D  ++D++ + E       +++I  TG NV+L    I      D+ L +  +
Sbjct: 260  MDNQIVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK 319

Query: 1094 TGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELI 1273
               M ++ + + D++ I K  G   ++ +      + F A MLG A E+ +E   +    
Sbjct: 320  MKIMVIKDIEREDIEFICKTIGTKPVAHI------DQFTADMLGSA-ELAEEVNLNGSGK 372

Query: 1274 LIKNTKART---SASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAAL 1444
            L+K T   +   + +I++RG+N  + +E ERS+HDALCV+R +++ ++++ GGGA E  L
Sbjct: 373  LLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIEL 432

Query: 1445 SIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPE 1624
            ++ L  Y+ ++   E   +  FA ++ VIP+TLA NA  +    V +LR  H + +    
Sbjct: 433  ALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE---- 488

Query: 1625 RKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 1780
                K  G+++  G   +  +  V +P +V V +L  ATE   +IL+IDD++
Sbjct: 489  ----KTAGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 536


>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
          Length = 541

 Score =  273 bits (699), Expect = 3e-73
 Identities = 173/524 (33%), Positives = 292/524 (55%), Gaps = 6/524 (1%)
 Frame = +2

Query: 230  EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKV 409
            EA++S ++MAA ++AN +++SLGP GLDKM+VD  GDVT+TNDGATIL +++V+H  AK+
Sbjct: 32   EALKS-HIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 90

Query: 410  LCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRY--- 580
            + EL+  QD E+GDGTT VV++A  LL+ A++L+ + IHP  +  GY  A + A+ +   
Sbjct: 91   MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDK 150

Query: 581  ISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYP 760
            IS++++++  +   + LI  AKT++ SK++       A + V+AVL +   + R      
Sbjct: 151  ISDSVLVDIKD--TEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDV---- 204

Query: 761  VNSINILKAHGR---SQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 931
                 ++K  G+      ++ LI G  ++       MPK++ +AKIA L    +  K K 
Sbjct: 205  --DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKT 262

Query: 932  GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAV 1111
              ++ +T  E    +++ E +  +E IQ+I  TGAN+ +   G DD      ++    AV
Sbjct: 263  KHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAV 322

Query: 1112 RRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 1291
            R V   +++ IA A+G  I+   + L  E+   A ++    + +      D++++I+  K
Sbjct: 323  RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLV----QEISFGTTKDKMLVIEQCK 378

Query: 1292 ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 1471
               + +I +RG N  + +E +RSLHDALCV+R ++    VV GGGA E + ++ +   A 
Sbjct: 379  NSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD 438

Query: 1472 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 1651
               + EQ A+  FA +L VIP  L+ N+  +    + ++RA     ++NP       +G+
Sbjct: 439  KCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRA-RQVKEMNPA------LGI 491

Query: 1652 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 1783
            D ++    D KQ  V E  I K + +  AT+    IL+IDD+ K
Sbjct: 492  DCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535


>ref|NP_001185771.1| T-complex protein 1 subunit beta isoform 2 [Homo sapiens].
          Length = 488

 Score =  266 bits (680), Expect = 5e-71
 Identities = 178/507 (35%), Positives = 280/507 (55%), Gaps = 5/507 (0%)
 Frame = +2

Query: 308  LDKMLVDDIGDVT--ITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAA 481
            +DK+L+    D +  +TNDGATILK + V++PAAKVL +++ +QD EVGDGTTSV ++AA
Sbjct: 1    MDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAA 60

Query: 482  ELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN-TDELG-RDCLINAAKTSM 655
            ELL+ A+ L+ +KIHP ++I+G+R A K A   +  + + + +DE+  R  L+N A T++
Sbjct: 61   ELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTL 120

Query: 656  SSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINILKAHGRSQTESMLINGYAL 835
            SSK++  + D F  + V+AVL +K +         + +I+I+K  G S  +S L  G+ L
Sbjct: 121  SSKLLTHHKDHFTKLAVEAVLRLKGSG-------NLEAIHIIKKLGGSLADSYLDEGFLL 173

Query: 836  NCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL-GVQVVITDPEKLDQIRQRESDITKERI 1012
            +  +G    PKRI NAKI   +  +   K+K+ G +V +    K+ +I   E +  KE++
Sbjct: 174  DKKIG-VNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKV 232

Query: 1013 QKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLE 1192
            ++IL  G N  +    I +   + F   G MA+       ++R+A  +G  I ST     
Sbjct: 233  ERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTF---- 288

Query: 1193 GEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDA 1372
              +  E   LG  + + +  I +D+LI         + +I+LRGA   + DE ERSLHDA
Sbjct: 289  --DHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDA 346

Query: 1373 LCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVN 1552
            LCV+ + ++    V GGG  E  ++  +   A     +E +A+  +A++L ++P  +A N
Sbjct: 347  LCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADN 406

Query: 1553 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLK 1732
            A  DS DLVA+LRA H+E             GLD+  G   D    G+ E   VK + L 
Sbjct: 407  AGYDSADLVAQLRAAHSEGNTT--------AGLDMREGTIGDMAILGITESFQVKRQVLL 458

Query: 1733 FATEAAITILRIDDLIKLHPESKDDKH 1813
             A EAA  ILR+D++IK  P  +   H
Sbjct: 459  SAAEAAEVILRVDNIIKAAPRKRVPDH 485


>ref|NP_006576.2| T-complex protein 1 subunit theta [Homo sapiens].
          Length = 548

 Score =  247 bits (630), Expect = 3e-65
 Identities = 166/533 (31%), Positives = 284/533 (53%), Gaps = 5/533 (0%)
 Frame = +2

Query: 245  QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 424
            +N+ A   +A   +++ GP G++KM+++ +  + +TND ATIL+ LEV+HPAAK++   +
Sbjct: 31   RNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMAS 90

Query: 425  DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN 604
             +Q++EVGDGT  V++ A  LL+ A+EL++  +  + VI GY +AC++A   I  NL+  
Sbjct: 91   HMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKA-HEILPNLVCC 149

Query: 605  TDELGRDC--LINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRYPVNSINI 778
            + +  RD   + +  +TS+ SK  G N  F A ++  A ++I + D      + V++I +
Sbjct: 150  SAKNLRDIDEVSSLLRTSIMSKQYG-NEVFLAKLIAQACVSI-FPD---SGHFNVDNIRV 204

Query: 779  LKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDP 958
             K  G   + S +++G        ++G    + +AKIA           +    V+I   
Sbjct: 205  CKILGSGISSSSVLHGMVFK--KETEGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTA 262

Query: 959  EKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLK 1138
            E+L    + E ++   +++ I  TGANV++T G + DM L Y  +   M VR   K DL+
Sbjct: 263  EELMNFSKGEENLMDAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 322

Query: 1139 RIAKASGATILSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSAS-II 1315
            R+ K  GAT L  L     EE      +G  + V    + D ++++ K+ K   + S I+
Sbjct: 323  RLCKTVGATALPRLTPPVLEE------MGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIV 376

Query: 1316 LRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQL 1495
            LRG+ D + D++ER++ D +   + +   K +VPGGGA E  L+  + +Y  +    EQ 
Sbjct: 377  LRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQY 436

Query: 1496 AIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKP- 1672
            AI +FA +   IP  LA N+   + ++++KL A H E   N        +GLD+    P 
Sbjct: 437  AIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKN--------VGLDIEAEVPA 488

Query: 1673 -RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGGYED 1828
             +D  +AG+ +  + K  ++K AT AA+T+LR+D +I   P        G +D
Sbjct: 489  VKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGGPKPPSGKKD 541


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 70,354,730
Number of extensions: 1759842
Number of successful extensions: 5722
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 5662
Number of HSP's successfully gapped: 22
Length of query: 649
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 540
Effective length of database: 14,704,088
Effective search space: 7940207520
Effective search space used: 7940207520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013068
         (1947 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         561   e-157
Sscrofa_Chr12                                                         436   e-119
Sscrofa_Chr03                                                         305   5e-80

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  561 bits (283), Expect = e-157
 Identities = 293/295 (99%), Gaps = 1/295 (0%)
 Strand = Plus / Plus

                                                                           
Query: 1641    ggattggtcttgacttggtcaatggtaaaccccgagacaacaagcaagcaggggtgtttg 1700
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399370 ggattggtcttgacttggtcaatggtaaaccccgagacaacaagcaagcaggggtgtttg 9399429

                                                                           
Query: 1701    aaccaaccatagttaaagtaaagagtttgaaatttgcaactgaagctgcaatcaccattc 1760
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399430 aaccaaccatagttaaagtaaagagtttgaaatttgcaactgaagctgcaatcaccattc 9399489

                                                                           
Query: 1761    ttcgaattgatgatcttattaagttacacccagaaagcaaagacgataagcatggagggt 1820
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399490 ttcgaattgatgatcttattaagttacacccagaaagcaaagacgataagcatggagggt 9399549

                                                                           
Query: 1821    atgaagatgctgtccactctggagcccttgatgactgatcgcatttatttataacagtgt 1880
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399550 atgaagatgctgtccactctggagcccttgatgactgatcgcatttatttataacagtgt 9399609

                                                                      
Query: 1881    tagaaccaattttcttgtacctggaatgtaatacatt-aaagtgcaacaagctgg 1934
               ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 9399610 tagaaccaattttcttgtacctggaatgttatacattaaaagtgcaacaagctgg 9399664



 Score =  484 bits (244), Expect = e-133
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                           
Query: 8       cccgtcctgccccgcggcctggccggggcgtggggcggtgctggtgagcgaggagcggcg 67
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9389103 cccgtcctgccccgcggcctggccggggcgtggggcggtgctggtgagcgaggagcggcg 9389162

                                                                           
Query: 68      ttcccagcatcctccgcggcgccgctgaggaccgttccacgccgttgccgcccggccgga 127
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9389163 ttcccagcatcctccgcggcgccgctgaggaccgttccacgccgttgccgcccggccgga 9389222

                                                                           
Query: 128     gcaccgcgccgcaggttgccctcggtgtgcccgaaactcgacgtgtaccctgccgcgagg 187
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9389223 gcaccgcgccgcaggttgccctcggtgtgcccgaaactcgacgtgtaccctgccgcgagg 9389282

                                                                           
Query: 188     atggaggggcctttgtccgtgttcggggaccgcagcactggggaggcgatccgctcccag 247
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9389283 atggaggggcctttgtccgtgttcggggaccgcagcactggggaggcgatccgctcccag 9389342

                   
Query: 248     aacg 251
               ||||
Sbjct: 9389343 aacg 9389346



 Score =  385 bits (194), Expect = e-104
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1285    cactaaagctcgtacctctgcgtccatcatcttacgcggggccaatgatttcatgtgtga 1344
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398224 cactaaagctcgtacctctgcgtccatcatcttacgcggggccaatgatttcatgtgtga 9398283

                                                                           
Query: 1345    cgagatggagcgctctctgcacgatgccctctgtgtggtgaggagagttctggagtccaa 1404
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398284 cgagatggagcgctctctgcacgatgccctctgtgtggtgaggagagttctggagtccaa 9398343

                                                                           
Query: 1405    gtctgtggttccaggcgggggtgcagtggaagccgccctttccatttacctcgagaacta 1464
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398344 gtctgtggttccaggcgggggtgcagtggaagccgccctttccatttacctcgagaacta 9398403

                             
Query: 1465    cgcgaccagcatgg 1478
               ||||||||||||||
Sbjct: 9398404 cgcgaccagcatgg 9398417



 Score =  363 bits (183), Expect = 2e-97
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                           
Query: 676     aaatggtgatttctttgctaatatggtggtagatgctgtacttgctattaaatacacaga 735
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9392765 aaatggtgatttctttgctaatatggtggtagatgctgtacttgctattaaatacacaga 9392824

                                                                           
Query: 736     tgtcagaggccagccacgctatccggtcaattccattaatatcctgaaagcccacgggag 795
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9392825 tgtcagaggccagccacgctatccggtcaattccattaatatcctgaaagcccacgggag 9392884

                                                                           
Query: 796     aagtcagacggagagtatgctcatcaacggctatgcgctcaactgtgtggtgggatccca 855
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9392885 aagtcagacggagagtatgctcatcaacggctatgcgctcaactgtgtggtgggatccca 9392944

                  
Query: 856     ggg 858
               |||
Sbjct: 9392945 ggg 9392947



 Score =  345 bits (174), Expect = 6e-92
 Identities = 177/178 (99%)
 Strand = Plus / Plus

                                                                           
Query: 983     agggaatcagatatcaccaaggagcgaatccagaagatcctggcaactggtgccaatgtt 1042
               |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9397162 agggaatcagatatcaccaaggagcgaatccagaagattctggcaactggtgccaatgtt 9397221

                                                                           
Query: 1043    attctaaccactggtgggattgacgacatgtgtctgaagtattttgtggagaccggtgcc 1102
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9397222 attctaaccactggtgggattgacgacatgtgtctgaagtattttgtggagaccggtgcc 9397281

                                                                         
Query: 1103    atggcagttagaagagttttaaaaagggaccttaaacgcattgctaaagcttctggag 1160
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9397282 atggcagttagaagagttttaaaaagggaccttaaacgcattgctaaagcttctggag 9397339



 Score =  329 bits (166), Expect = 3e-87
 Identities = 166/166 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1477    gggctcccgggaacagcttgctattgcagagtttgcaagatctcttcttgtcattcctaa 1536
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398567 gggctcccgggaacagcttgctattgcagagtttgcaagatctcttcttgtcattcctaa 9398626

                                                                           
Query: 1537    tactctggcagttaatgctgcccaagactccacggatctggtcgcaaaattaagagcctt 1596
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398627 tactctggcagttaatgctgcccaagactccacggatctggtcgcaaaattaagagcctt 9398686

                                                             
Query: 1597    tcataatgaggctcaagttaacccagaacgcaaaaatctaaaatgg 1642
               ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398687 tcataatgaggctcaagttaacccagaacgcaaaaatctaaaatgg 9398732



 Score =  260 bits (131), Expect = 3e-66
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                           
Query: 338     gatgtaaccataactaacgatggtgcaaccatcttgaagttactggaggtagaacatcct 397
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9390801 gatgtaaccataactaacgatggtgcaaccatcttgaagttactggaggtagaacatcct 9390860

                                                                           
Query: 398     gcagccaaagttctctgtgagctagctgatctgcaagacaaagaagtgggggatggaacc 457
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9390861 gcagccaaagttctctgtgagctagctgatctgcaagacaaagaagtgggggatggaacc 9390920

                          
Query: 458     acctctgtggt 468
               |||||||||||
Sbjct: 9390921 acctctgtggt 9390931



 Score =  250 bits (126), Expect = 2e-63
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1159    agcgactattctgtcaactctggccaatttggaaggcgaagaaacgtttgaagcttcaat 1218
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9397799 agcgactattctgtcaactctggccaatttggaaggcgaagaaacgtttgaagcttcaat 9397858

                                                                           
Query: 1219    gttgggacaagcagaagaggtggtacaggaaagaatttgtgatgatgaactgatcttgat 1278
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9397859 gttgggacaagcagaagaggtggtacaggaaagaatttgtgatgatgaactgatcttgat 9397918

                     
Query: 1279    taaaaa 1284
               ||||||
Sbjct: 9397919 taaaaa 9397924



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                           
Query: 565     ggaagcagtgcgttatatcagtgaaaatctaatcattaacacagatgaacttgggaggga 624
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9392359 ggaagcagtgcgttatatcagtgaaaatctaatcattaacacagatgaacttgggaggga 9392418

                                                                  
Query: 625     ttgcctgattaatgctgctaagacatcaatgtcttccaaaatcattggaat 675
               |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9392419 ttgcctgattaatgctgctaagacatcaatgtcttccaaaatcattggaat 9392469



 Score =  198 bits (100), Expect = 8e-48
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                           
Query: 466     ggttattattgcagcagaactgctgaaaaatgcggatgaactagtcaaacagaaaatcca 525
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9391872 ggttattattgcagcagaactgctgaaaaatgcggatgaactagtcaaacagaaaatcca 9391931

                                                       
Query: 526     tcccacatcagttattagtggctatcgacttgcttgcaag 565
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9391932 tcccacatcagttattagtggctatcgacttgcttgcaag 9391971



 Score =  184 bits (93), Expect = 1e-43
 Identities = 117/129 (90%)
 Strand = Plus / Plus

                                                                           
Query: 857     ggcatgcccaagagaatagttaatgcaaaaattgcttgccttgacttcagcctgcnnnnn 916
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 9393569 ggcatgcccaagagaatagttaatgcaaaaattgcttgccttgacttcagcctgcaaaaa 9393628

                                                                           
Query: 917     nnnnnnntgaagcttggtgtacaagtggttattacagaccctgaaaaactggaccagatt 976
                      |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9393629 acaaaaatgaagcttggtgtacaagtggttattacagaccctgaaaaactggaccagatt 9393688

                        
Query: 977     agacagagg 985
               |||||||||
Sbjct: 9393689 agacagagg 9393697



 Score =  174 bits (88), Expect = 1e-40
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                           
Query: 251     gtcatggctgcggcttcgattgctaatattgtgaaaagttctcttggtccagtcggcctg 310
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9390504 gtcatggctgcggcttcgattgctaatattgtgaaaagttctcttggtccagtcggcctg 9390563

                                           
Query: 311     gataaaatgttagtggatgatattggtg 338
               ||||||||||||||||||||||||||||
Sbjct: 9390564 gataaaatgttagtggatgatattggtg 9390591


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  436 bits (220), Expect = e-119
 Identities = 266/280 (95%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1656     tggtcaatggtaaaccccgagacaacaagcaagcaggggtgtttgaaccaaccatagtta 1715
                |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16593752 tggtcaatggtaaaccccaagacaacaagcaagcaggggtgtttgaaccaaccatagtta 16593693

                                                                            
Query: 1716     aagtaaagagtttgaaatttgcaactgaagctgcaatcaccattcttcgaattgatgatc 1775
                ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 16593692 aagtaaagagtatgaaatttgcaactgaagctgcagtcaccattcttcgaactgatgatc 16593633

                                                                            
Query: 1776     ttattaagttacacccagaaagcaaagacgataagcatggagggtatgaagatgctgtcc 1835
                |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct: 16593632 ttattaagttacacccagaaagcaaagacggtgagcatggagggtatgaagatgctgttc 16593573

                                                                            
Query: 1836     actctggagcccttgatgactgatcgcatttatttataacagtgttagaaccaattttct 1895
                ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 16593572 actatggagcccttgaggactgatctcatttatttataacagtgttagaaccaattttct 16593513

                                                        
Query: 1896     tgtacctggaatgtaatacatt-aaagtgcaacaagctgg 1934
                |||| ||||||||| ||||||| |||||||||| ||||||
Sbjct: 16593512 tgtatctggaatgttatacattaaaagtgcaacgagctgg 16593473


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  305 bits (154), Expect = 5e-80
 Identities = 320/372 (86%), Gaps = 5/372 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1322     ggggccaatgatttcatgtgtgacgagatggagcgctctctgcacgatgccctctgtgtg 1381
                ||||| |||||||||||||||||| ||||  |||||||| | || ||||| || ||||||
Sbjct: 56825342 ggggcaaatgatttcatgtgtgacaagatcaagcgctctttacatgatgctctttgtgtg 56825401

                                                                            
Query: 1382     gtgaggagagttctggagtccaagtctgtggttccaggcgggggtgcagtggaagccgcc 1441
                |||   |||||| ||||||| || ||| |||||||||| |||| ||| || ||||| |||
Sbjct: 56825402 gtgc--agagttttggagtcaaaatctatggttccaggtgggg-tgctgtagaagcagcc 56825458

                                                                            
Query: 1442     ctttccatttacctcgagaactacgcgaccagcatgggctcccgggaacagcttgctatt 1501
                 ||||||   ||||||| ||||  || |||||||||| |  || |||||||||||||| |
Sbjct: 56825459 ttttccagaaacctcgaaaactgtgcaaccagcatggac--ccaggaacagcttgctact 56825516

                                                                            
Query: 1502     gcagagtttgcaagatctcttcttgtcattcctaatactctggcagttaatgctgcccaa 1561
                ||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 56825517 gcagagtttgcgagctgtcttcttgttattcctaatactctggcagttaatgctgcccag 56825576

                                                                            
Query: 1562     gactccacggatctggtcgcaaaattaagagcctttcataatgaggctcaagttaaccca 1621
                | | |||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 56825577 ggcgccacagatctggttgcaaaattaagagcttttcataatgaggctcaaattaaccca 56825636

                                                                            
Query: 1622     gaacgcaaaaatctaaaatggattggtcttgacttggtcaatggtaaaccccgagacaac 1681
                ||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||| || |
Sbjct: 56825637 gaatgcaaaaatctaaaatggattagtcttgacttggtcagtggtaaaccctgaggcagc 56825696

                            
Query: 1682     aagcaagcaggg 1693
                || |||||||||
Sbjct: 56825697 aaacaagcaggg 56825708



 Score =  236 bits (119), Expect = 4e-59
 Identities = 176/195 (90%)
 Strand = Plus / Plus

                                                                            
Query: 1732     atttgcaactgaagctgcaatcaccattcttcgaattgatgatcttattaagttacaccc 1791
                ||||||||||||||||| | |||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 56825710 atttgcaactgaagctgtagtcactattcttcgaattcatgatcttattaagttataccc 56825769

                                                                            
Query: 1792     agaaagcaaagacgataagcatggagggtatgaagatgctgtccactctggagcccttga 1851
                |||||||||||| |||||||||||||| | |||||||||||| |||||||||||||||||
Sbjct: 56825770 agaaagcaaagatgataagcatggaggttttgaagatgctgttcactctggagcccttga 56825829

                                                                            
Query: 1852     tgactgatcgcatttatttataacagtgttagaaccaattttcttgtacctggaatgtaa 1911
                |||||||||  |||||||||||||| ||||||| |||||||||   |||||||| | | |
Sbjct: 56825830 tgactgatctgatttatttataacaatgttagatccaattttcccatacctggagtatta 56825889

                               
Query: 1912     tacattaaagtgcaa 1926
                |||||||||||||||
Sbjct: 56825890 tacattaaagtgcaa 56825904


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,152,872
Number of extensions: 245
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 16
Length of query: 1947
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1925
Effective length of database: 2,808,408,574
Effective search space: 5406186504950
Effective search space used: 5406186504950
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)