Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013073
(1173 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192653.1| deoxyribonuclease gamma [Bos taurus]. 507 e-144
Alignment gi|XP_002697036.1| PREDICTED: deoxyribonuclease I-like 3 [Bos t... 507 e-144
Alignment gi|XP_001789810.2| PREDICTED: DNASE1L3 protein-like, partial [B... 365 e-101
Alignment gi|NP_776959.1| deoxyribonuclease-1 precursor [Bos taurus]. 253 2e-67
Alignment gi|NP_001098489.1| deoxyribonuclease-1-like 2 [Bos taurus]. 223 2e-58
Alignment gi|NP_001033723.1| deoxyribonuclease-1-like 1 precursor [Bos ta... 216 2e-56
>ref|NP_001192653.1| deoxyribonuclease gamma [Bos taurus].
Length = 305
Score = 507 bits (1305), Expect = e-144
Identities = 244/270 (90%), Positives = 258/270 (95%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
+ICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDS+N ICPTLMEKLNGNSR+
Sbjct: 22 KICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSSNRICPTLMEKLNGNSRK 81
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
+TYNYVISSRLGRNTYKEQYAFLYKEKLVSVK+SYLYHDYQ+GDADVFSREPFVVWFQS
Sbjct: 82 GITYNYVISSRLGRNTYKEQYAFLYKEKLVSVKQSYLYHDYQAGDADVFSREPFVVWFQS 141
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
PYTAVKDFVI+PLHTTPETSV+EIDEL DVY DVKRRW AENFIFMGDFNAGCSYVPKKA
Sbjct: 142 PYTAVKDFVIVPLHTTPETSVREIDELADVYTDVKRRWNAENFIFMGDFNAGCSYVPKKA 201
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
WK+IRLRTDP F+WLI DQEDTTVKKSTNCAYDRIVLRGQ IV+SVVP SN +FDFQKAY
Sbjct: 202 WKDIRLRTDPKFVWLIGDQEDTTVKKSTNCAYDRIVLRGQNIVNSVVPQSNLVFDFQKAY 261
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAK 1044
RL+E KALDVSDHFPVEFKLQSSRAFT +K
Sbjct: 262 RLSESKALDVSDHFPVEFKLQSSRAFTNSK 291
>ref|XP_002697036.1| PREDICTED: deoxyribonuclease I-like 3 [Bos taurus].
Length = 305
Score = 507 bits (1305), Expect = e-144
Identities = 244/270 (90%), Positives = 258/270 (95%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
+ICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDS+N ICPTLMEKLNGNSR+
Sbjct: 22 KICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSSNRICPTLMEKLNGNSRK 81
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
+TYNYVISSRLGRNTYKEQYAFLYKEKLVSVK+SYLYHDYQ+GDADVFSREPFVVWFQS
Sbjct: 82 GITYNYVISSRLGRNTYKEQYAFLYKEKLVSVKQSYLYHDYQAGDADVFSREPFVVWFQS 141
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
PYTAVKDFVI+PLHTTPETSV+EIDEL DVY DVKRRW AENFIFMGDFNAGCSYVPKKA
Sbjct: 142 PYTAVKDFVIVPLHTTPETSVREIDELADVYTDVKRRWNAENFIFMGDFNAGCSYVPKKA 201
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
WK+IRLRTDP F+WLI DQEDTTVKKSTNCAYDRIVLRGQ IV+SVVP SN +FDFQKAY
Sbjct: 202 WKDIRLRTDPKFVWLIGDQEDTTVKKSTNCAYDRIVLRGQNIVNSVVPQSNLVFDFQKAY 261
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAK 1044
RL+E KALDVSDHFPVEFKLQSSRAFT +K
Sbjct: 262 RLSESKALDVSDHFPVEFKLQSSRAFTNSK 291
>ref|XP_001789810.2| PREDICTED: DNASE1L3 protein-like, partial [Bos taurus].
Length = 188
Score = 365 bits (937), Expect = e-101
Identities = 172/188 (91%), Positives = 181/188 (96%)
Frame = +1
Query: 313 VIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRRSVTYNYVISSRLGRNTYKEQYAFLYK 492
VIKRCDIILLMEIKDS+N ICPTLMEKLNGNSR+ +TYNYVISSRLGRNTYKEQYAFLYK
Sbjct: 1 VIKRCDIILLMEIKDSSNRICPTLMEKLNGNSRKGITYNYVISSRLGRNTYKEQYAFLYK 60
Query: 493 EKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQSPYTAVKDFVIIPLHTTPETSVKEIDE 672
EKLVSVK+SYLYHDYQ+GDADVFSREPFVVWFQSPYTAVKDFVI+PLHTTPETSV+EIDE
Sbjct: 61 EKLVSVKQSYLYHDYQAGDADVFSREPFVVWFQSPYTAVKDFVIVPLHTTPETSVREIDE 120
Query: 673 LVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPMFIWLIKDQEDTTVKK 852
L DVY DVKRRW AENFIFMGDFNAGCSYVPKKAWK+IRLRTDP F+WLI DQEDTTVKK
Sbjct: 121 LADVYTDVKRRWNAENFIFMGDFNAGCSYVPKKAWKDIRLRTDPKFVWLIGDQEDTTVKK 180
Query: 853 STNCAYDR 876
STNCAYDR
Sbjct: 181 STNCAYDR 188
>ref|NP_776959.1| deoxyribonuclease-1 precursor [Bos taurus].
Length = 282
Score = 253 bits (647), Expect = 2e-67
Identities = 131/261 (50%), Positives = 175/261 (67%), Gaps = 1/261 (0%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
+I +FN+R+FGE+K +N IV++++R DI+L+ E++DS+ + L++ LN +
Sbjct: 24 KIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPN 83
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHD-YQSGDADVFSREPFVVWFQ 591
TY+YV+S LGRN+YKE+Y FL++ VSV +Y Y D +S D FSREP VV F
Sbjct: 84 --TYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFS 141
Query: 592 SPYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKK 771
S T VK+F I+ LH+ P +V EI+ L DVYLDV+++W + + MGDFNA CSYV
Sbjct: 142 SHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSS 201
Query: 772 AWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKA 951
W +IRLRT F WLI D DTT STNCAYDRIV+ G + SSVVPGS + FDFQ A
Sbjct: 202 QWSSIRLRTSSTFQWLIPDSADTTA-TSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAA 260
Query: 952 YRLTEEKALDVSDHFPVEFKL 1014
Y L+ E AL +SDH+PVE L
Sbjct: 261 YGLSNEMALAISDHYPVEVTL 281
>ref|NP_001098489.1| deoxyribonuclease-1-like 2 [Bos taurus].
Length = 278
Score = 223 bits (569), Expect = 2e-58
Identities = 118/262 (45%), Positives = 168/262 (64%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RI +FN++SFG+SK ++ VI +++ D++L+ E++D + LME++N SR
Sbjct: 23 RIGAFNIQSFGDSKVSDPGCGGVIAQILAGYDVMLVQEVRDPDLSAVSVLMEQINSVSRH 82
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
YN+V S LGR+ YKE Y F+Y++ VSV +Y Y D + D FSREPFVV +
Sbjct: 83 E--YNFVSSEPLGRDQYKEMYLFVYRKDTVSVVDTYQYPDAE----DAFSREPFVVKVSA 136
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P +A + V+IPLH P +V EID L DVYLDV +W ++ +F+GDFNA C YV ++
Sbjct: 137 PGSAATELVLIPLHAAPHHAVAEIDALYDVYLDVIDKWGTDDILFLGDFNADCKYVREQD 196
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
W IRLR+ +F WLI D DTTV S +CAYDRIV+ G + S+ S ++ DFQ+ +
Sbjct: 197 WPAIRLRSSEVFKWLIPDSADTTVGNS-DCAYDRIVVCGSRLRKSLKHQSATVHDFQEEF 255
Query: 955 RLTEEKALDVSDHFPVEFKLQS 1020
L + +AL +SDHFPVE L+S
Sbjct: 256 GLDQTQALAISDHFPVEVTLKS 277
>ref|NP_001033723.1| deoxyribonuclease-1-like 1 precursor [Bos taurus].
Length = 316
Score = 216 bits (551), Expect = 2e-56
Identities = 113/267 (42%), Positives = 172/267 (64%), Gaps = 2/267 (0%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLN--GNS 408
RIC+FN + +K A +D +VK++ RCDI++L E+ DS++ P L+ +LN G+S
Sbjct: 30 RICAFNAQRLTLAKVAREPVLDTLVKILARCDIMVLQEVVDSSDTAIPLLLRELNRFGDS 89
Query: 409 RRSVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWF 588
+++ ++ LGR+TYKE+Y +LY+ V+ SY+Y D D+F+REPFV WF
Sbjct: 90 GPYASHSSLL---LGRSTYKEKYVYLYRSHEAEVRDSYMYDDQD----DLFTREPFVCWF 142
Query: 589 QSPYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPK 768
+ V++PLHTTP+ E++ L DV+LD RW+ ++ I +GDFNA C+ + K
Sbjct: 143 SLRSKVLPSLVLVPLHTTPKAVETELNALYDVFLDASGRWQTKDVILLGDFNADCTSLTK 202
Query: 769 KAWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQK 948
K ++ LRT F W I D DTTV+ ST+C YDRIVL G E++ S++ G+ + FDF +
Sbjct: 203 KRLDDLVLRTQAGFHWAIADGVDTTVRASTHCTYDRIVLHG-ELLQSLLRGA-AAFDFPQ 260
Query: 949 AYRLTEEKALDVSDHFPVEFKLQSSRA 1029
++ LTE++AL++SDH+PVE L S A
Sbjct: 261 SFGLTEQEALNISDHYPVEVDLALSWA 287
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,949,786
Number of extensions: 1111137
Number of successful extensions: 3480
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3462
Number of HSP's successfully gapped: 6
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013073
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013073
(1173 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533780.1| PREDICTED: similar to Deoxyribonuclease gamma p... 487 e-137
Alignment gi|NP_001002946.1| deoxyribonuclease-1 precursor [Canis lupus f... 247 2e-65
Alignment gi|XP_549370.2| PREDICTED: similar to Deoxyribonuclease I-like ... 226 3e-59
Alignment gi|XP_867663.1| PREDICTED: similar to Deoxyribonuclease I-like ... 215 6e-56
Alignment gi|XP_547180.2| PREDICTED: similar to Deoxyribonuclease I-like ... 127 2e-29
>ref|XP_533780.1| PREDICTED: similar to Deoxyribonuclease gamma precursor (DNase gamma)
(Deoxyribonuclease I-like 3) (DNase I homolog protein
DHP2) (Liver and spleen DNase) (LS-DNase) (LSD) [Canis
familiaris].
Length = 304
Score = 487 bits (1253), Expect = e-137
Identities = 236/270 (87%), Positives = 253/270 (93%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
R+CSFNVRSFG +K+ N NAMDVIVKVIKRCDIILLME+KDSNNMICPTL+EKLNGNSRR
Sbjct: 22 RLCSFNVRSFGGAKRENKNAMDVIVKVIKRCDIILLMEVKDSNNMICPTLLEKLNGNSRR 81
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
+ YNYVISSRLGRNTYKEQYAFLYKEKLVSVKK YLYHDYQ+GDADVFSREPFVVWFQS
Sbjct: 82 GIKYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKYYLYHDYQAGDADVFSREPFVVWFQS 141
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P+TAVKDFVI+PLHTTPE SVKEIDELVDVYLDVKRRW+AENFIFMGDFNAGCSYVPKKA
Sbjct: 142 PFTAVKDFVIVPLHTTPEASVKEIDELVDVYLDVKRRWKAENFIFMGDFNAGCSYVPKKA 201
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
WK IRLRTDP F+WLI DQEDTTVK ST+CAYDRIVLRG EI+ SVVP SNS FDFQKA+
Sbjct: 202 WKIIRLRTDPGFVWLIGDQEDTTVKSSTHCAYDRIVLRGPEIIRSVVPRSNSTFDFQKAF 261
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAK 1044
LTEE+AL+VSDHFPVEFKLQSSRAFT +K
Sbjct: 262 LLTEEEALNVSDHFPVEFKLQSSRAFTNSK 291
>ref|NP_001002946.1| deoxyribonuclease-1 precursor [Canis lupus familiaris].
Length = 284
Score = 247 bits (630), Expect = 2e-65
Identities = 124/262 (47%), Positives = 175/262 (66%), Gaps = 1/262 (0%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
R+ +FN+R+FGE+K +N IV+++ R D+ ++ E++DS+ L++ LN +
Sbjct: 24 RMAAFNIRTFGETKMSNATLSKYIVQILSRYDVAVVQEVRDSHLTAVGKLLDTLNQDDPN 83
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHD-YQSGDADVFSREPFVVWFQ 591
+ Y+YV+S LGR++YKE+Y FL++ VSV SY Y D + D FSREP +V F
Sbjct: 84 A--YHYVVSEPLGRSSYKERYLFLFRPDRVSVLDSYQYDDGCEPCGNDTFSREPAIVRFH 141
Query: 592 SPYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKK 771
SP T VK+F ++PLH P +V EID L DVYLDV+ +W+ E+ + MGDFNAGCSYV
Sbjct: 142 SPLTEVKEFAVVPLHAAPLDAVAEIDALYDVYLDVQHKWDLEDIVLMGDFNAGCSYVAAS 201
Query: 772 AWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKA 951
W +IRLRT+P F WLI D DTT ST+CAYDRIV+ G ++ +VVP S + F+FQ A
Sbjct: 202 QWSSIRLRTNPAFQWLIPDTADTT-STSTHCAYDRIVVAGSQLQHAVVPESAAPFNFQVA 260
Query: 952 YRLTEEKALDVSDHFPVEFKLQ 1017
Y L+ + A +SDH+PVE L+
Sbjct: 261 YGLSSQLAQAISDHYPVEVTLK 282
>ref|XP_549370.2| PREDICTED: similar to Deoxyribonuclease I-like 1 precursor (DNase
I-like 1) (Muscle-specific DNase I-like) (DNase X) (XIB)
isoform 1 [Canis familiaris].
Length = 295
Score = 226 bits (576), Expect = 3e-59
Identities = 114/260 (43%), Positives = 169/260 (65%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN + SK A + MD+ V+++ RCDI++L E+ DS+ L+ +LN
Sbjct: 19 RICAFNAQRLTLSKVAREHVMDIFVRILARCDIMVLQEVVDSSGSAISLLLRELN-RFDN 77
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S Y+++ S LGRNTY E+Y ++Y+ V SY+Y D D+F+REPFV F
Sbjct: 78 SGFYSFLSSPLLGRNTYMEKYVYIYRSHKTQVLDSYVYEDKD----DLFAREPFVAQFTF 133
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ KE++ L DV+LDV +RW++++ I +GDFNA C+ + KK
Sbjct: 134 PSKVLPSLVLVPLHTTPKAVEKELNALYDVFLDVSQRWQSKDMILLGDFNADCASLNKKR 193
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
+ LRT+ F W+I D EDTTV+ ST+CAYDRIVL G+ S + S + F+F +++
Sbjct: 194 LAELALRTEAGFRWVIADGEDTTVRASTHCAYDRIVLHGERCQSLL--SSAAAFNFPRSF 251
Query: 955 RLTEEKALDVSDHFPVEFKL 1014
RL EE+AL++SDH+PVE +L
Sbjct: 252 RLNEEEALNISDHYPVEVEL 271
>ref|XP_867663.1| PREDICTED: similar to Deoxyribonuclease I-like 1 precursor (DNase
I-like 1) (Muscle-specific DNase I-like) (DNase X) (XIB)
isoform 2 [Canis familiaris].
Length = 314
Score = 215 bits (548), Expect = 6e-56
Identities = 114/279 (40%), Positives = 169/279 (60%), Gaps = 19/279 (6%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN + SK A + MD+ V+++ RCDI++L E+ DS+ L+ +LN
Sbjct: 19 RICAFNAQRLTLSKVAREHVMDIFVRILARCDIMVLQEVVDSSGSAISLLLRELN-RFDN 77
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S Y+++ S LGRNTY E+Y ++Y+ V SY+Y D D+F+REPFV F
Sbjct: 78 SGFYSFLSSPLLGRNTYMEKYVYIYRSHKTQVLDSYVYEDKD----DLFAREPFVAQFTF 133
Query: 595 P-------------------YTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAE 717
P + V++PLHTTP+ KE++ L DV+LDV +RW+++
Sbjct: 134 PSKGGLGGECPERVGASSWGLAVLPSLVLVPLHTTPKAVEKELNALYDVFLDVSQRWQSK 193
Query: 718 NFIFMGDFNAGCSYVPKKAWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQE 897
+ I +GDFNA C+ + KK + LRT+ F W+I D EDTTV+ ST+CAYDRIVL G+
Sbjct: 194 DMILLGDFNADCASLNKKRLAELALRTEAGFRWVIADGEDTTVRASTHCAYDRIVLHGER 253
Query: 898 IVSSVVPGSNSIFDFQKAYRLTEEKALDVSDHFPVEFKL 1014
S + S + F+F +++RL EE+AL++SDH+PVE +L
Sbjct: 254 CQSLL--SSAAAFNFPRSFRLNEEEALNISDHYPVEVEL 290
>ref|XP_547180.2| PREDICTED: similar to Deoxyribonuclease I-like 2 precursor (DNase
I-like 2) (DNase I homolog protein DHP1) [Canis
familiaris].
Length = 218
Score = 127 bits (319), Expect = 2e-29
Identities = 68/158 (43%), Positives = 98/158 (62%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RI +FN++SFG+SK + +I +++ DI L+ E++D + L+E++N SR
Sbjct: 23 RIGAFNIQSFGDSKVLDPACGGIIAQILAGYDITLVQEVRDPDLSAVSALLEQINSVSRH 82
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
Y++V S LGR+ YKE Y F+Y++ VSV +Y Y D D FSREPFVV F +
Sbjct: 83 E--YSFVSSEPLGRDQYKEMYLFVYRKDAVSVLDTYQYPD----PGDFFSREPFVVKFSA 136
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRW 708
P +A ++ V+IPLH P +V EID L DVYLDV +W
Sbjct: 137 PGSAARELVLIPLHAAPHQAVAEIDALYDVYLDVIDKW 174
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,649,794
Number of extensions: 1124511
Number of successful extensions: 3601
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3581
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013073
(1173 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354682.1| PREDICTED: deoxyribonuclease-1-like [Sus scr... 253 1e-67
Alignment gi|NP_999156.1| deoxyribonuclease-1 precursor [Sus scrofa]. 251 5e-67
Alignment gi|NP_001033721.1| deoxyribonuclease-1-like 1 precursor [Sus sc... 211 8e-55
>ref|XP_003354682.1| PREDICTED: deoxyribonuclease-1-like [Sus scrofa].
Length = 284
Score = 253 bits (646), Expect = 1e-67
Identities = 128/262 (48%), Positives = 178/262 (67%), Gaps = 1/262 (0%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RI +FN+R+FGE+K +N + IV+++ R DI L+ E++DS+ L+ +LN +
Sbjct: 24 RIAAFNIRTFGETKMSNATLSNYIVRILSRYDIALIQEVRDSHLTAVGKLLNELNQDDPN 83
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHD-YQSGDADVFSREPFVVWFQ 591
+ Y++V+S LGR+TYKE+Y F+++ VSV SYLY D + D F+REP VV F
Sbjct: 84 N--YHHVVSEPLGRSTYKERYLFVFRPDQVSVLDSYLYDDGCEPCGNDTFNREPSVVKFS 141
Query: 592 SPYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKK 771
SP+T VK+F I+PLH P + EID L DVYL+V+++W+ E+ + MGDFNAGCSYV
Sbjct: 142 SPFTQVKEFAIVPLHAAPSDAAAEIDSLYDVYLNVRQKWDLEDIMLMGDFNAGCSYVTTS 201
Query: 772 AWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKA 951
W +IRLR P F WLI D DTTV ST+CAYDRIV+ G + +VVP S + FDFQ A
Sbjct: 202 HWSSIRLRESPPFQWLIPDTADTTV-SSTHCAYDRIVVAGPLLQRAVVPDSAAPFDFQAA 260
Query: 952 YRLTEEKALDVSDHFPVEFKLQ 1017
+ L+E+ AL +SDH+PVE L+
Sbjct: 261 FGLSEQTALAISDHYPVEVTLK 282
>ref|NP_999156.1| deoxyribonuclease-1 precursor [Sus scrofa].
Length = 284
Score = 251 bits (641), Expect = 5e-67
Identities = 128/262 (48%), Positives = 177/262 (67%), Gaps = 1/262 (0%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RI +FN+R+FGE+K +N + IV+++ R DI L+ E++DS+ L+ +LN +
Sbjct: 24 RIAAFNIRTFGETKMSNATLSNYIVRILSRYDIALIQEVRDSHLTAVGKLLNELNQDDPN 83
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHD-YQSGDADVFSREPFVVWFQ 591
+ Y++V+S LGR+TYKE+Y F+++ VSV SYLY D + D F+REP VV F
Sbjct: 84 N--YHHVVSEPLGRSTYKERYLFVFRPDQVSVLDSYLYDDGCEPCGNDTFNREPSVVKFS 141
Query: 592 SPYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKK 771
SP T VK+F I+PLH P + EID L DVYL+V+++W+ E+ + MGDFNAGCSYV
Sbjct: 142 SPSTQVKEFAIVPLHAAPSDAAAEIDSLYDVYLNVRQKWDLEDIMLMGDFNAGCSYVTTS 201
Query: 772 AWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKA 951
W +IRLR P F WLI D DTTV ST+CAYDRIV+ G + +VVP S + FDFQ A
Sbjct: 202 HWSSIRLRESPPFQWLIPDTADTTV-SSTHCAYDRIVVAGPLLQRAVVPDSAAPFDFQAA 260
Query: 952 YRLTEEKALDVSDHFPVEFKLQ 1017
+ L+E+ AL +SDH+PVE L+
Sbjct: 261 FGLSEQTALAISDHYPVEVTLK 282
>ref|NP_001033721.1| deoxyribonuclease-1-like 1 precursor [Sus scrofa].
Length = 315
Score = 211 bits (536), Expect = 8e-55
Identities = 110/260 (42%), Positives = 160/260 (61%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN + +K A MD +V+++ RCDI +L E+ DS P L+ +LN
Sbjct: 31 RICAFNAQRLTLAKVAREYVMDTLVRILARCDITVLQEVVDSTGSAIPLLLRELN-RFDG 89
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S Y+ + S LGR YKE+YA++Y+ V YLY D + D+F+REPFV F
Sbjct: 90 SGPYSSLSSPLLGRGAYKEKYAYIYRSHRTQVLNFYLYPD----EDDLFAREPFVGQFSL 145
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ E+ L +V+LDV +RW++E+ I +GDFNA C+ + KK
Sbjct: 146 PSKVLPSLVLVPLHTTPKAVEPELKALYEVFLDVSQRWQSEDVILLGDFNADCASLTKKR 205
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
+ LRT F W + D DTTV+ ST+C YDRIVL G+ + S + + FDF +++
Sbjct: 206 LDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRIVLHGERLQSLL--RNAGAFDFPQSF 263
Query: 955 RLTEEKALDVSDHFPVEFKL 1014
LTEE+AL++SDH+PVE +L
Sbjct: 264 GLTEEEALNISDHYPVEVEL 283
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,116,477
Number of extensions: 729025
Number of successful extensions: 2228
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2214
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013073
(1173 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031896.3| deoxyribonuclease gamma precursor [Mus musculus]. 470 e-132
Alignment gi|NP_034191.3| deoxyribonuclease-1 precursor [Mus musculus]. 253 2e-67
Alignment gi|NP_001165625.1| deoxyribonuclease-1-like 1 precursor [Mus mu... 227 1e-59
Alignment gi|NP_081385.1| deoxyribonuclease-1-like 1 precursor [Mus muscu... 227 1e-59
Alignment gi|NP_079994.2| deoxyribonuclease-1-like 2 precursor [Mus muscu... 222 4e-58
>ref|NP_031896.3| deoxyribonuclease gamma precursor [Mus musculus].
Length = 310
Score = 470 bits (1209), Expect = e-132
Identities = 226/267 (84%), Positives = 245/267 (91%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
R+CSFNVRSFG SKK N AMD+IVK+IKRCD+ILLMEIKDS+N ICP LMEKLNGNSRR
Sbjct: 27 RLCSFNVRSFGASKKENHEAMDIIVKIIKRCDLILLMEIKDSSNNICPMLMEKLNGNSRR 86
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S TYNYVISSRLGRNTYKEQYAF+YKEKLVSVK Y YHDYQ GD DVFSREPFVVWF S
Sbjct: 87 STTYNYVISSRLGRNTYKEQYAFVYKEKLVSVKTKYHYHDYQDGDTDVFSREPFVVWFHS 146
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P+TAVKDFVI+PLHTTPETSVKEIDELVDVY DV+ +W+ ENFIFMGDFNAGCSYVPKKA
Sbjct: 147 PFTAVKDFVIVPLHTTPETSVKEIDELVDVYTDVRSQWKTENFIFMGDFNAGCSYVPKKA 206
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
W+NIRLRTDP F+WLI DQEDTTVKKST+CAYDRIVL GQEIV+SVVP S+ +FDFQKAY
Sbjct: 207 WQNIRLRTDPKFVWLIGDQEDTTVKKSTSCAYDRIVLCGQEIVNSVVPRSSGVFDFQKAY 266
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFT 1035
L+EE+ALDVSDHFPVEFKLQSSRAFT
Sbjct: 267 DLSEEEALDVSDHFPVEFKLQSSRAFT 293
>ref|NP_034191.3| deoxyribonuclease-1 precursor [Mus musculus].
Length = 284
Score = 253 bits (647), Expect = 2e-67
Identities = 130/262 (49%), Positives = 175/262 (66%), Gaps = 1/262 (0%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RI +FN+R+FGE+K +N VK++ R DI ++ E++DS+ + L+++LN + +
Sbjct: 24 RIAAFNIRTFGETKMSNATLSVYFVKILSRYDIAVIQEVRDSHLVAVGKLLDELNRD--K 81
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHD-YQSGDADVFSREPFVVWFQ 591
TY YV+S LGR +YKEQY F+Y+ VS+ SY Y D + D FSREP +V F
Sbjct: 82 PDTYRYVVSEPLGRKSYKEQYLFVYRPDQVSILDSYQYDDGCEPCGNDTFSREPAIVKFF 141
Query: 592 SPYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKK 771
SPYT V++F I+PLH P +V EID L DVYLDV ++W E+ +FMGDFNAGCSYV
Sbjct: 142 SPYTEVQEFAIVPLHAAPTEAVSEIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSS 201
Query: 772 AWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKA 951
W +IRLRT P+F WLI D DTTV ST+CAYDRIV+ G + ++VVP S FDFQ
Sbjct: 202 QWSSIRLRTSPIFQWLIPDSADTTV-TSTHCAYDRIVVAGALLQAAVVPNSAVPFDFQAE 260
Query: 952 YRLTEEKALDVSDHFPVEFKLQ 1017
Y L+ + A +SDH+PVE L+
Sbjct: 261 YGLSNQLAEAISDHYPVEVTLR 282
>ref|NP_001165625.1| deoxyribonuclease-1-like 1 precursor [Mus musculus].
Length = 314
Score = 227 bits (579), Expect = 1e-59
Identities = 116/263 (44%), Positives = 170/263 (64%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN +K + MD +V+++ RCDI++L E+ DS+ P L++KL +
Sbjct: 39 RICAFNAHRLTLAKLTKESVMDTLVQILARCDIMVLQEVVDSSQNTVPFLLQKL----KS 94
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S +Y+++ SS LGR+TYKE+Y ++Y+ V Y Y+D D+F+REPFV F
Sbjct: 95 SRSYSFLNSSLLGRSTYKEKYVYIYRSDKTQVLNFYQYNDTD----DIFAREPFVAHFTL 150
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ KE++ L DV+LDV +RW+ EN I +GDFNA C+ + KK
Sbjct: 151 PSKTLPSVVLVPLHTTPKDVEKELNALYDVFLDVYQRWQNENVILLGDFNADCASLTKKR 210
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
K++ LRT F W+I D EDTTV+ STNC YDRIV+ GQ ++ + + FDF K +
Sbjct: 211 LKSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRIVVHGQG--CQMLLKAAATFDFPKRF 268
Query: 955 RLTEEKALDVSDHFPVEFKLQSS 1023
+LTEE+AL +SDH+PVE +L +
Sbjct: 269 QLTEEEALRISDHYPVEVELSQA 291
>ref|NP_081385.1| deoxyribonuclease-1-like 1 precursor [Mus musculus].
Length = 314
Score = 227 bits (579), Expect = 1e-59
Identities = 116/263 (44%), Positives = 170/263 (64%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN +K + MD +V+++ RCDI++L E+ DS+ P L++KL +
Sbjct: 39 RICAFNAHRLTLAKLTKESVMDTLVQILARCDIMVLQEVVDSSQNTVPFLLQKL----KS 94
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S +Y+++ SS LGR+TYKE+Y ++Y+ V Y Y+D D+F+REPFV F
Sbjct: 95 SRSYSFLNSSLLGRSTYKEKYVYIYRSDKTQVLNFYQYNDTD----DIFAREPFVAHFTL 150
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ KE++ L DV+LDV +RW+ EN I +GDFNA C+ + KK
Sbjct: 151 PSKTLPSVVLVPLHTTPKDVEKELNALYDVFLDVYQRWQNENVILLGDFNADCASLTKKR 210
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
K++ LRT F W+I D EDTTV+ STNC YDRIV+ GQ ++ + + FDF K +
Sbjct: 211 LKSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRIVVHGQG--CQMLLKAAATFDFPKRF 268
Query: 955 RLTEEKALDVSDHFPVEFKLQSS 1023
+LTEE+AL +SDH+PVE +L +
Sbjct: 269 QLTEEEALRISDHYPVEVELSQA 291
>ref|NP_079994.2| deoxyribonuclease-1-like 2 precursor [Mus musculus].
Length = 278
Score = 222 bits (566), Expect = 4e-58
Identities = 117/257 (45%), Positives = 164/257 (63%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RI +FNV+SFG++K ++ + VI +++ DI L+ E++D + LME++N S+
Sbjct: 23 RIGAFNVQSFGDNKVSDPDCGSVIAQILAGYDIALVQEVRDPDLSAVSLLMEQINRVSKH 82
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
Y +V S LGR+ YKE Y F+Y++ + SV +Y Y D + D FSREPFVV F
Sbjct: 83 E--YGFVSSKPLGRDQYKEMYLFVYRKDVASVVSTYQYPDPE----DAFSREPFVVKFSV 136
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P A K+ V+IPLH P +V EID L DVYLDV +W ++ +F+GDFNA C YV
Sbjct: 137 PSCATKELVLIPLHAAPHQAVAEIDALYDVYLDVIDKWNTDDMLFLGDFNADCKYVKAHD 196
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
W +IRLR+ +F WLI D DTTV S +CAYDRIV+ G + S+ P S S+ +FQ+ +
Sbjct: 197 WPSIRLRSSEVFKWLIPDSADTTVGNS-DCAYDRIVVSGAHLRRSLKPHSASVHNFQEEF 255
Query: 955 RLTEEKALDVSDHFPVE 1005
L + +AL +SDHFPVE
Sbjct: 256 DLDQTQALAISDHFPVE 272
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,565,976
Number of extensions: 938703
Number of successful extensions: 2816
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2799
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013073
(1173 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004935.1| deoxyribonuclease gamma precursor [Homo sapiens]. 498 e-141
Alignment gi|NP_005214.2| deoxyribonuclease-1 precursor [Homo sapiens]. 236 2e-62
Alignment gi|NP_001009934.1| deoxyribonuclease-1-like 1 precursor [Homo s... 227 1e-59
Alignment gi|NP_001009933.1| deoxyribonuclease-1-like 1 precursor [Homo s... 227 1e-59
Alignment gi|NP_001009932.1| deoxyribonuclease-1-like 1 precursor [Homo s... 227 1e-59
Alignment gi|NP_006721.1| deoxyribonuclease-1-like 1 precursor [Homo sapi... 227 1e-59
Alignment gi|NP_001365.1| deoxyribonuclease-1-like 2 precursor [Homo sapi... 218 1e-56
>ref|NP_004935.1| deoxyribonuclease gamma precursor [Homo sapiens].
Length = 305
Score = 498 bits (1282), Expect = e-141
Identities = 243/270 (90%), Positives = 256/270 (94%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RICSFNVRSFGESK+ + NAMDVIVKVIKRCDIIL+MEIKDSNN ICP LMEKLN NSRR
Sbjct: 22 RICSFNVRSFGESKQEDKNAMDVIVKVIKRCDIILVMEIKDSNNRICPILMEKLNRNSRR 81
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
+TYNYVISSRLGRNTYKEQYAFLYKEKLVSVK+SY YHDYQ GDADVFSREPFVVWFQS
Sbjct: 82 GITYNYVISSRLGRNTYKEQYAFLYKEKLVSVKRSYHYHDYQDGDADVFSREPFVVWFQS 141
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P+TAVKDFVIIPLHTTPETSVKEIDELV+VY DVK RW+AENFIFMGDFNAGCSYVPKKA
Sbjct: 142 PHTAVKDFVIIPLHTTPETSVKEIDELVEVYTDVKHRWKAENFIFMGDFNAGCSYVPKKA 201
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
WKNIRLRTDP F+WLI DQEDTTVKKSTNCAYDRIVLRGQEIVSSVVP SNS+FDFQKAY
Sbjct: 202 WKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPKSNSVFDFQKAY 261
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAK 1044
+LTEE+ALDVSDHFPVEFKLQSSRAFT +K
Sbjct: 262 KLTEEEALDVSDHFPVEFKLQSSRAFTNSK 291
>ref|NP_005214.2| deoxyribonuclease-1 precursor [Homo sapiens].
Length = 282
Score = 236 bits (603), Expect = 2e-62
Identities = 122/262 (46%), Positives = 171/262 (65%), Gaps = 1/262 (0%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
+I +FN+++FGE+K +N + IV+++ R DI L+ E++DS+ L++ LN ++
Sbjct: 24 KIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLNQDAPD 83
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHD-YQSGDADVFSREPFVVWFQ 591
TY+YV+S LGRN+YKE+Y F+Y+ VS SY Y D + D F+REP +V F
Sbjct: 84 --TYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAIVRFF 141
Query: 592 SPYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKK 771
S +T V++F I+PLH P +V EID L DVYLDV+ +W E+ + MGDFNAGCSYV
Sbjct: 142 SRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPS 201
Query: 772 AWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKA 951
W +IRL T P F WLI D DTT T+CAYDRIV+ G + +VVP S F+FQ A
Sbjct: 202 QWSSIRLWTSPTFQWLIPDSADTTA-TPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAA 260
Query: 952 YRLTEEKALDVSDHFPVEFKLQ 1017
Y L+++ A +SDH+PVE L+
Sbjct: 261 YGLSDQLAQAISDHYPVEVMLK 282
>ref|NP_001009934.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 227 bits (579), Expect = 1e-59
Identities = 114/273 (41%), Positives = 175/273 (64%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN + +K A MD +V+++ RCDI++L E+ DS+ P L+ +LN
Sbjct: 20 RICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRELN-RFDG 78
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S Y+ + S +LGR+TY E Y + Y+ V SY+Y+D + DVF+REPFV F
Sbjct: 79 SGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYND----EDDVFAREPFVAQFSL 134
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ KE++ L DV+L+V + W++++ I +GDFNA C+ + KK
Sbjct: 135 PSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTKKR 194
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
+ LRT+P F W+I D EDTTV+ ST+C YDR+VL G+ S + + + FDF ++
Sbjct: 195 LDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLL--HTAAAFDFPTSF 252
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAKIHL 1053
+LTEE+AL++SDH+PVE +L+ S+A + + L
Sbjct: 253 QLTEEEALNISDHYPVEVELKLSQAHSVQPLSL 285
>ref|NP_001009933.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 227 bits (579), Expect = 1e-59
Identities = 114/273 (41%), Positives = 175/273 (64%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN + +K A MD +V+++ RCDI++L E+ DS+ P L+ +LN
Sbjct: 20 RICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRELN-RFDG 78
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S Y+ + S +LGR+TY E Y + Y+ V SY+Y+D + DVF+REPFV F
Sbjct: 79 SGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYND----EDDVFAREPFVAQFSL 134
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ KE++ L DV+L+V + W++++ I +GDFNA C+ + KK
Sbjct: 135 PSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTKKR 194
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
+ LRT+P F W+I D EDTTV+ ST+C YDR+VL G+ S + + + FDF ++
Sbjct: 195 LDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLL--HTAAAFDFPTSF 252
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAKIHL 1053
+LTEE+AL++SDH+PVE +L+ S+A + + L
Sbjct: 253 QLTEEEALNISDHYPVEVELKLSQAHSVQPLSL 285
>ref|NP_001009932.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 227 bits (579), Expect = 1e-59
Identities = 114/273 (41%), Positives = 175/273 (64%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN + +K A MD +V+++ RCDI++L E+ DS+ P L+ +LN
Sbjct: 20 RICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRELN-RFDG 78
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S Y+ + S +LGR+TY E Y + Y+ V SY+Y+D + DVF+REPFV F
Sbjct: 79 SGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYND----EDDVFAREPFVAQFSL 134
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ KE++ L DV+L+V + W++++ I +GDFNA C+ + KK
Sbjct: 135 PSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTKKR 194
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
+ LRT+P F W+I D EDTTV+ ST+C YDR+VL G+ S + + + FDF ++
Sbjct: 195 LDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLL--HTAAAFDFPTSF 252
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAKIHL 1053
+LTEE+AL++SDH+PVE +L+ S+A + + L
Sbjct: 253 QLTEEEALNISDHYPVEVELKLSQAHSVQPLSL 285
>ref|NP_006721.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens].
Length = 302
Score = 227 bits (579), Expect = 1e-59
Identities = 114/273 (41%), Positives = 175/273 (64%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RIC+FN + +K A MD +V+++ RCDI++L E+ DS+ P L+ +LN
Sbjct: 20 RICAFNAQRLTLAKVAREQVMDTLVRILARCDIMVLQEVVDSSGSAIPLLLRELN-RFDG 78
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
S Y+ + S +LGR+TY E Y + Y+ V SY+Y+D + DVF+REPFV F
Sbjct: 79 SGPYSTLSSPQLGRSTYMETYVYFYRSHKTQVLSSYVYND----EDDVFAREPFVAQFSL 134
Query: 595 PYTAVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEAENFIFMGDFNAGCSYVPKKA 774
P + V++PLHTTP+ KE++ L DV+L+V + W++++ I +GDFNA C+ + KK
Sbjct: 135 PSNVLPSLVLVPLHTTPKAVEKELNALYDVFLEVSQHWQSKDVILLGDFNADCASLTKKR 194
Query: 775 WKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSSVVPGSNSIFDFQKAY 954
+ LRT+P F W+I D EDTTV+ ST+C YDR+VL G+ S + + + FDF ++
Sbjct: 195 LDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLHGERCRSLL--HTAAAFDFPTSF 252
Query: 955 RLTEEKALDVSDHFPVEFKLQSSRAFTTAKIHL 1053
+LTEE+AL++SDH+PVE +L+ S+A + + L
Sbjct: 253 QLTEEEALNISDHYPVEVELKLSQAHSVQPLSL 285
>ref|NP_001365.1| deoxyribonuclease-1-like 2 precursor [Homo sapiens].
Length = 299
Score = 218 bits (554), Expect = 1e-56
Identities = 122/284 (42%), Positives = 170/284 (59%), Gaps = 20/284 (7%)
Frame = +1
Query: 235 RICSFNVRSFGESKKANCNAMDVIVKVIKRCDIILLMEIKDSNNMICPTLMEKLNGNSRR 414
RI +FN++SFG+SK ++ +I K++ D+ L+ E++D + LME++N S
Sbjct: 23 RIGAFNIQSFGDSKVSDPACGSIIAKILAGYDLALVQEVRDPDLSAVSALMEQINSVSEH 82
Query: 415 SVTYNYVISSRLGRNTYKEQYAFLYKEKLVSVKKSYLYHDYQSGDADVFSREPFVVWFQS 594
Y++V S LGR+ YKE Y F+Y++ VSV +YLY D + DVFSREPFVV F +
Sbjct: 83 E--YSFVSSQPLGRDQYKEMYLFVYRKDAVSVVDTYLYPDPE----DVFSREPFVVKFSA 136
Query: 595 PYT--------------------AVKDFVIIPLHTTPETSVKEIDELVDVYLDVKRRWEA 714
P T A ++ V+IPLH P +V EID L DVYLDV +W
Sbjct: 137 PGTGERAPPLPSRRALTPPPLPAAAQNLVLIPLHAAPHQAVAEIDALYDVYLDVIDKWGT 196
Query: 715 ENFIFMGDFNAGCSYVPKKAWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQ 894
++ +F+GDFNA CSYV + W IRLR+ +F WLI D DTTV S +CAYDRIV G
Sbjct: 197 DDMLFLGDFNADCSYVRAQDWAAIRLRSSEVFKWLIPDSADTTVGNS-DCAYDRIVACGA 255
Query: 895 EIVSSVVPGSNSIFDFQKAYRLTEEKALDVSDHFPVEFKLQSSR 1026
+ S+ P S ++ DFQ+ + L + +AL +SDHFPVE L+ R
Sbjct: 256 RLRRSLKPQSATVHDFQEEFGLDQTQALAISDHFPVEVTLKFHR 299
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,947,188
Number of extensions: 1111956
Number of successful extensions: 3406
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3384
Number of HSP's successfully gapped: 7
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013073
(1173 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 319 2e-84
>Sscrofa_Chr13
|| Length = 218635234
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 716 agaatttcattttcatgggtgacttcaatgctggctgcagctatgtccccaagaaggcct 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43932406 agaatttcattttcatgggtgacttcaatgctggctgcagctatgtccccaagaaggcct 43932347
Query: 776 ggaagaacatccgcctaaggactgaccccatgttcatttggctgatcaaggaccaagaag 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43932346 ggaagaacatccgcctaaggactgaccccatgttcatttggctgatcaaggaccaagaag 43932287
Query: 836 acaccacagtcaagaagagcacaaactgtgcctatgacagg 876
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 43932286 acaccacagtcaagaagagcacaaactgtgcctatgacagg 43932246
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 492 ggaaaagctagtgtctgtgaagaaaagctatctctaccatgactatcagtctggagacgc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904005 ggaaaagctagtgtctgtgaagaaaagctatctctaccatgactatcagtctggagacgc 43903946
Query: 552 agatgtattttccagggaaccctttgtggtctggttccagtcaccctacactg 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43903945 agatgtattttccagggaaccctttgtggtctggttccagtcaccctacactg 43903893
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 873 caggattgtgcttcgaggccaagagattgtcagctctgttgttcctggctcaaacagcat 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43928260 caggattgtgcttcgaggccaagagattgtcagctctgttgttcctggctcaaacagcat 43928201
Query: 933 ctttgacttccagaaagcttacaggttgactgaagagaagg 973
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 43928200 ctttgacttccagaaagcttacaggttgactgaagagaagg 43928160
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 401 gaaattcaagaagaagcgtaacatataactatgtgattagttctcggcttggaagaaaca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43904651 gaaattcaagaagaagcgtaacatataactatgtgattagttctcggcttggaagaaaca 43904592
Query: 461 catataaagaacagtatgcctttctctacaag 492
||||||||||||||||||||||||||||||||
Sbjct: 43904591 catataaagaacagtatgcctttctctacaag 43904560
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 311 aggtcatcaaacgctgcgacatcatactcctgatggaaatcaaggacagcaacaacatga 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906283 aggtcatcaaacgctgcgacatcatactcctgatggaaatcaaggacagcaacaacatga 43906224
Query: 371 tctgtcccacgctgatggagaagctgaatgg 401
|||||||||||||||||||||||||||||||
Sbjct: 43906223 tctgtcccacgctgatggagaagctgaatgg 43906193
Score = 135 bits (68), Expect = 6e-29
Identities = 75/76 (98%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 971 aggccctggatgtcagcgaccactttccagttgaatttaaacttcagtcttcaagggcct 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43927866 aggccctggatgtcagcgaccactttccagttgaatttaaacttcagtcttcaagggcct 43927807
Query: 1031 tca-caacagcaaaaa 1045
||| ||||||||||||
Sbjct: 43927806 tcaccaacagcaaaaa 43927791
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,886,833
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 6
Length of query: 1173
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1152
Effective length of database: 2,808,413,156
Effective search space: 3235291955712
Effective search space used: 3235291955712
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)