Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013075
(990 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070477.1| P2Y purinoceptor 14 [Bos taurus]. 338 4e-93
Alignment gi|NP_001091621.1| P2Y purinoceptor 13 [Bos taurus]. 203 2e-52
Alignment gi|NP_001192380.1| G-protein coupled receptor 87 [Bos taurus]. 175 6e-44
Alignment gi|XP_002685065.1| PREDICTED: G protein-coupled receptor 87-lik... 175 6e-44
Alignment gi|NP_001001174.2| P2Y purinoceptor 12 [Bos taurus]. 174 1e-43
Alignment gi|NP_001070470.1| probable G-protein coupled receptor 171 [Bos... 119 4e-27
Alignment gi|NP_001033622.2| proteinase-activated receptor 3 precursor [B... 80 4e-15
Alignment gi|NP_001035628.1| platelet-activating factor receptor [Bos tau... 73 3e-13
Alignment gi|NP_001039748.1| proteinase-activated receptor 2 precursor [B... 73 4e-13
Alignment gi|NP_776835.1| P2Y purinoceptor 1 [Bos taurus]. 72 1e-12
>ref|NP_001070477.1| P2Y purinoceptor 14 [Bos taurus].
Length = 337
Score = 338 bits (867), Expect = 4e-93
Identities = 172/242 (71%), Positives = 189/242 (78%)
Frame = +1
Query: 265 MNATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLK 444
MNAT+ E SCP N LIT++IIP LYFVVFVAGILLNG+SGW+FFYVPSSKSFIVYLK
Sbjct: 1 MNATSVPPAEGSCPSNALITKQIIPMLYFVVFVAGILLNGMSGWVFFYVPSSKSFIVYLK 60
Query: 445 NIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYY 624
NIV+ADFLMSLTFPFKILGD GLG WQ+ VFVCRVSAVLFYINMYVSIVFFG IGFDRYY
Sbjct: 61 NIVIADFLMSLTFPFKILGDLGLGLWQVKVFVCRVSAVLFYINMYVSIVFFGLIGFDRYY 120
Query: 625 KIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGP 804
KIVKPLLTSF PNMILTN++V E TR+KC++LK++LG
Sbjct: 121 KIVKPLLTSFIQSISYSKLLSVLVWSLTLLIALPNMILTNRNVTEATRVKCMDLKSDLGL 180
Query: 805 HWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
WHKAS+YIFVGIFW V SLIIFYTAIT+KIFKSH +K S KK SRNIFSIM V
Sbjct: 181 KWHKASSYIFVGIFWIVFLSLIIFYTAITKKIFKSHFKSRKNSVSVKKKSSRNIFSIMFV 240
Query: 985 VF 990
F
Sbjct: 241 FF 242
>ref|NP_001091621.1| P2Y purinoceptor 13 [Bos taurus].
Length = 333
Score = 203 bits (517), Expect = 2e-52
Identities = 101/244 (41%), Positives = 139/244 (56%), Gaps = 2/244 (0%)
Frame = +1
Query: 265 MNATTTQA--PEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVY 438
MN T + E CP++ Q + PA+Y +VF GILLN ++ W+F ++PSS +FIVY
Sbjct: 1 MNVTVMKGFNGSERCPRDLKTAQLVFPAIYTIVFFVGILLNSLALWVFIHIPSSSTFIVY 60
Query: 439 LKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDR 618
LKN +VAD +M+L PFKIL D+ LGPWQL FVCR SAV+FY +MYV I G I FDR
Sbjct: 61 LKNTLVADLIMTLMLPFKILSDARLGPWQLRAFVCRFSAVIFYESMYVGITLLGLIAFDR 120
Query: 619 YYKIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNEL 798
+ KI++P F PNMIL+N+ + KC LK L
Sbjct: 121 FLKIIRPFGKFFVQKPAFAKGVSTLIWLFLFLLSLPNMILSNKEATPSSVKKCASLKGPL 180
Query: 799 GPHWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIM 978
G WH+A NYI IFW V +++FYT I +K++ S+ + S K++ +F ++
Sbjct: 181 GLKWHEAVNYISQFIFWTVFVLMLLFYTVIAKKVYDSYRKSKSKDSKNNKRLEGKVFVVV 240
Query: 979 VVVF 990
V F
Sbjct: 241 AVFF 244
>ref|NP_001192380.1| G-protein coupled receptor 87 [Bos taurus].
Length = 358
Score = 175 bits (443), Expect = 6e-44
Identities = 100/221 (45%), Positives = 126/221 (57%), Gaps = 1/221 (0%)
Frame = +1
Query: 331 IIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVADFLMSLTFPFKILGDSG 510
++P LY V+FVA ILLNG++ WIFF++ + SFI YLKNIVVAD +M+LTFPF+I+ D+G
Sbjct: 44 VLPGLYLVIFVASILLNGLAVWIFFHIRNKTSFIFYLKNIVVADLIMTLTFPFRIVHDAG 103
Query: 511 LGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSFXXXXXXXXXXXX 690
LGPW +CR S+VLFY NMY SIVF G I DRY K+VKP S
Sbjct: 104 LGPWYFKFILCRYSSVLFYANMYTSIVFLGLISIDRYLKVVKPFGDSRMYSITFTKVLSV 163
Query: 691 XXXXXXXXXXXPNMILTN-QSVREGTRIKCVELKNELGPHWHKASNYIFVGIFWNVCSSL 867
PN+ILTN Q RE +C +LK+ LG WH A Y+ +F V L
Sbjct: 164 CVWVLMAVLSLPNIILTNVQPTRENIH-ECTKLKSPLGVKWHNAITYVNSCLFVVVLVIL 222
Query: 868 IIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVVF 990
I Y AI+R I KS Q S K+ ++V VF
Sbjct: 223 IGCYIAISRYIHKS--SRQFISQSSRKRKHNQSIRVVVAVF 261
>ref|XP_002685065.1| PREDICTED: G protein-coupled receptor 87-like [Bos taurus].
Length = 358
Score = 175 bits (443), Expect = 6e-44
Identities = 100/221 (45%), Positives = 126/221 (57%), Gaps = 1/221 (0%)
Frame = +1
Query: 331 IIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVADFLMSLTFPFKILGDSG 510
++P LY V+FVA ILLNG++ WIFF++ + SFI YLKNIVVAD +M+LTFPF+I+ D+G
Sbjct: 44 VLPGLYLVIFVASILLNGLAVWIFFHIRNKTSFIFYLKNIVVADLIMTLTFPFRIVHDAG 103
Query: 511 LGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSFXXXXXXXXXXXX 690
LGPW +CR S+VLFY NMY SIVF G I DRY K+VKP S
Sbjct: 104 LGPWYFKFILCRYSSVLFYANMYTSIVFLGLISIDRYLKVVKPFGDSRMYSITFTKVLSV 163
Query: 691 XXXXXXXXXXXPNMILTN-QSVREGTRIKCVELKNELGPHWHKASNYIFVGIFWNVCSSL 867
PN+ILTN Q RE +C +LK+ LG WH A Y+ +F V L
Sbjct: 164 CVWVLMAVLSLPNIILTNVQPTRENIH-ECTKLKSPLGVKWHNAITYVNSCLFVVVLVIL 222
Query: 868 IIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVVF 990
I Y AI+R I KS Q S K+ ++V VF
Sbjct: 223 IGCYIAISRYIHKS--SRQFISQSSRKRKHNQSIRVVVAVF 261
>ref|NP_001001174.2| P2Y purinoceptor 12 [Bos taurus].
Length = 339
Score = 174 bits (440), Expect = 1e-43
Identities = 92/241 (38%), Positives = 133/241 (55%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N T+ C ++ ITQ + P LY V+F G++ N ++ IFF + S +FI++LKN
Sbjct: 3 NLTSVAGNSSQCSRDYKITQVLFPLLYTVLFFVGLITNSLAMRIFFQIRSKSNFIIFLKN 62
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
V++D LM LTFPFKIL D+ LG L FVC+V++V+FY MY+SI F G I DRY K
Sbjct: 63 TVISDLLMILTFPFKILSDTKLGTGPLRAFVCQVTSVVFYFTMYISISFLGLITIDRYQK 122
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPH 807
+P T+ PNMILTN+ + T KC LK+E G
Sbjct: 123 TTRPFKTANPNNLLGAKILSVVIWAFMFLISLPNMILTNRRPSDKTVKKCSFLKSEFGLV 182
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVV 987
WH+ NY+ IFW +I+ YT IT++++KS++ + KK++ +F I+ V
Sbjct: 183 WHEIVNYVCQVIFWINFLIVIVCYTLITKELYKSYVRTRGAGKVPKKKVNIKVFIIIAVF 242
Query: 988 F 990
F
Sbjct: 243 F 243
>ref|NP_001070470.1| probable G-protein coupled receptor 171 [Bos taurus].
Length = 319
Score = 119 bits (298), Expect = 4e-27
Identities = 61/214 (28%), Positives = 112/214 (52%), Gaps = 1/214 (0%)
Frame = +1
Query: 346 YFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMSLTFPFKILGDSGLGPW 522
+++VF+ GI+ + + W F ++ + +YL N++ ADFL++L P KI D G+ PW
Sbjct: 21 FYLVFLIGIIGSCFATWAFIQKNTNHRCVSIYLINLLTADFLLTLALPVKITVDLGVAPW 80
Query: 523 QLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSFXXXXXXXXXXXXXXXX 702
+L +F C+V+A L YINMY+SI+F F+ DR ++
Sbjct: 81 KLRIFHCQVTACLIYINMYLSIIFLAFVSIDRCLQLTYSCKIYRIQEPGFAKMISAVVWL 140
Query: 703 XXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIFVGIFWNVCSSLIIFYT 882
PNMI+ + ++E + C+E K+E G +WH +N+I + IF+N + ++I
Sbjct: 141 MVLLIMVPNMIIPIKDIKEKPNVGCMEFKSEFGRNWHLLTNFISIAIFFNFSAIILISNC 200
Query: 883 AITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
+ R+++++ + + R + SI++V
Sbjct: 201 LVIRQLYRN------KDNENYPNVKRALISILLV 228
>ref|NP_001033622.2| proteinase-activated receptor 3 precursor [Bos taurus].
Length = 377
Score = 79.7 bits (195), Expect = 4e-15
Identities = 40/107 (37%), Positives = 59/107 (55%)
Frame = +1
Query: 319 ITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVADFLMSLTFPFKIL 498
++ K+IPA+Y +VF G+ N V+ W+ F + + I Y N+ +ADFL +T PF+I
Sbjct: 92 LSTKLIPAIYILVFAVGMPANAVTLWMLFRTRTIRMTIFYT-NLAIADFLFCVTLPFRIA 150
Query: 499 GDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKP 639
W +CR + V+FY NMY SI+ I +RY IV P
Sbjct: 151 YHLNGNNWVFGEVMCRATTVIFYGNMYCSILLLACISINRYLAIVHP 197
>ref|NP_001035628.1| platelet-activating factor receptor [Bos taurus].
Length = 342
Score = 73.2 bits (178), Expect = 3e-13
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Frame = +1
Query: 289 PEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI---VYLKNIVVA 459
P S ++ + P Y +VFV G++ N W+F + SK F +++ N+ +A
Sbjct: 3 PNNSFRVDSEFRYTLFPIFYSIVFVLGVIANSYVLWVFARLYPSKKFNEIKIFMVNLTMA 62
Query: 460 DFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKP 639
D L +T P I+ G W L F+C ++ F+IN Y S+ F I ++R+ + +P
Sbjct: 63 DLLFLVTLPLWIVYYYNQGDWILPKFLCNLAGCFFFINTYCSVAFLAVITYNRFQAVTRP 122
Query: 640 LLTS 651
+ T+
Sbjct: 123 IKTA 126
>ref|NP_001039748.1| proteinase-activated receptor 2 precursor [Bos taurus].
Length = 395
Score = 72.8 bits (177), Expect = 4e-13
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Frame = +1
Query: 319 ITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKS-FIVYLKNIVVADFLMSLTFPFKI 495
+T +P +Y +VFV G+ NG++ W+F + K ++Y+ N+ +AD L FP KI
Sbjct: 71 LTTVFLPVVYTIVFVVGLPSNGMALWVFLFRTKKKHPAVIYMANLALADLLSVTWFPLKI 130
Query: 496 LGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLL 645
W +C+V FY NMY SI+F + RY+ IV P++
Sbjct: 131 AYHIHGNNWIYGESLCKVLIGFFYGNMYCSILFMTCLSVQRYWVIVNPMV 180
>ref|NP_776835.1| P2Y purinoceptor 1 [Bos taurus].
Length = 373
Score = 71.6 bits (174), Expect = 1e-12
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQK-----IIPALYFVVFVAGILLNGVSGWIF-FYVPSSKSF 429
N+T T + P +T+ +PA+Y +VF+ G L N V+ W+F F++
Sbjct: 27 NSTVTSTAAVASPFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGI 86
Query: 430 IVYLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIG 609
VY+ N+ +ADFL LT P I W +C++ +F++N+Y SI+F I
Sbjct: 87 SVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCIS 146
Query: 610 FDRYYKIVKPL 642
RY +V PL
Sbjct: 147 AHRYSGVVYPL 157
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,925,858
Number of extensions: 789084
Number of successful extensions: 3288
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 3187
Number of HSP's successfully gapped: 78
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013075
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013075
(990 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542838.2| PREDICTED: similar to P2Y purinoceptor 14 (P2Y1... 341 6e-94
Alignment gi|XP_852662.1| PREDICTED: similar to Probable G-protein couple... 200 2e-51
Alignment gi|NP_001003365.1| P2Y purinoceptor 12 [Canis lupus familiaris]. 173 2e-43
Alignment gi|XP_542839.2| PREDICTED: similar to Probable G-protein couple... 172 3e-43
Alignment gi|XP_542837.1| PREDICTED: similar to G protein-coupled recepto... 120 3e-27
Alignment gi|XP_849866.1| PREDICTED: similar to Proteinase activated rece... 84 2e-16
Alignment gi|NP_001139463.1| proteinase-activated receptor 2 [Canis lupus... 73 5e-13
Alignment gi|XP_544462.2| PREDICTED: similar to Platelet activating facto... 70 2e-12
Alignment gi|NP_001005764.1| P2Y purinoceptor 1 [Canis lupus familiaris]. 70 3e-12
Alignment gi|NP_001180602.1| P2Y purinoceptor 1 [Canis lupus familiaris]. 70 3e-12
>ref|XP_542838.2| PREDICTED: similar to P2Y purinoceptor 14 (P2Y14) (UDP-glucose
receptor) (G-protein coupled receptor 105) [Canis
familiaris].
Length = 340
Score = 341 bits (875), Expect = 6e-94
Identities = 176/243 (72%), Positives = 192/243 (79%), Gaps = 2/243 (0%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N++TTQ PEESC +NT+ITQ+I+P LY VVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN
Sbjct: 3 NSSTTQPPEESCSRNTVITQQIVPVLYLVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 62
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
IVVADFLMSLTFPFKIL DSGLGPW+++VFVCRVSAVLFY+NMYVSIVFFGFI FDRYYK
Sbjct: 63 IVVADFLMSLTFPFKILADSGLGPWRIHVFVCRVSAVLFYVNMYVSIVFFGFISFDRYYK 122
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVR--EGTRIKCVELKNELG 801
IVKPLLTSF PN+ILTNQ+V + TRIKCV LKNELG
Sbjct: 123 IVKPLLTSFIHSVNYSKLLSVMVWVLMLLLAVPNIILTNQNVSNVKVTRIKCVTLKNELG 182
Query: 802 PHWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMV 981
WHKASNYIFVGIFW V LI FYTAITRKIFKSHL ++ S +K SRNIFSIM
Sbjct: 183 LKWHKASNYIFVGIFWIVFFLLIFFYTAITRKIFKSHLKSRRNSISVKRKSSRNIFSIMF 242
Query: 982 VVF 990
V F
Sbjct: 243 VFF 245
>ref|XP_852662.1| PREDICTED: similar to Probable G-protein coupled receptor 86 (P2Y
purinoceptor 13) (P2Y13) [Canis familiaris].
Length = 333
Score = 200 bits (509), Expect = 2e-51
Identities = 99/232 (42%), Positives = 132/232 (56%)
Frame = +1
Query: 295 ESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVADFLMS 474
E CP++T I Q + PA+Y VVF GILLN ++ W+F ++PSS +FIVYLKN +VAD +M+
Sbjct: 13 ERCPRDTRIAQLVFPAVYTVVFFTGILLNTLALWVFLHIPSSSTFIVYLKNTLVADLVMT 72
Query: 475 LTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSF 654
L PFKIL DS LGPWQL FVCR SAV+FY MYV I+ GFI FDR+ KI++P F
Sbjct: 73 LMLPFKILSDSHLGPWQLRAFVCRFSAVIFYETMYVGIILLGFIAFDRFLKIIRPFGKFF 132
Query: 655 XXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIF 834
PN+IL+N+ + KC LK LG WH NYI
Sbjct: 133 VQKPVFAKMASALVWLLLFLISLPNIILSNKEATPSSVKKCASLKGPLGLKWHGVVNYIC 192
Query: 835 VGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVVF 990
IFW V + +FY I +K++ S+ + K+ +F ++ V F
Sbjct: 193 QFIFWTVFILMFLFYVVIAKKVYDSYRKTRSKDRKHNTKLEGKVFVVVAVFF 244
>ref|NP_001003365.1| P2Y purinoceptor 12 [Canis lupus familiaris].
Length = 339
Score = 173 bits (439), Expect = 2e-43
Identities = 93/241 (38%), Positives = 133/241 (55%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N T+ C ++ ITQ + P LY V+F G++ N ++ IFF + S +FI++LKN
Sbjct: 3 NLTSVAGNGSLCTRDYKITQVLFPLLYTVLFFVGLITNSLAMRIFFQIRSKSNFIIFLKN 62
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
V++D LM LTFPFKIL D+ LG L FVC+V++V+FY MY+SI F G I DRY K
Sbjct: 63 TVISDLLMILTFPFKILSDAKLGTGPLRTFVCQVTSVVFYFTMYISISFLGLITIDRYQK 122
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPH 807
+P TS PNMILTN+ R+ KC LK+E G
Sbjct: 123 TTRPFKTSSPNNLLGAKILSVVIWAFMFLLSLPNMILTNRRPRDKNVKKCSFLKSEFGLV 182
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVV 987
WH+ NYI IFW +I+ YT IT+++++S++ + KK++ +F I+ V
Sbjct: 183 WHEIVNYICQVIFWINFLIVIVCYTLITKELYRSYVRTRGVGKVPKKKVNIKVFIIIAVF 242
Query: 988 F 990
F
Sbjct: 243 F 243
>ref|XP_542839.2| PREDICTED: similar to Probable G-protein coupled receptor 87 [Canis
familiaris].
Length = 358
Score = 172 bits (437), Expect = 3e-43
Identities = 96/237 (40%), Positives = 130/237 (54%)
Frame = +1
Query: 280 TQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVA 459
+ P ++ N ++P LY ++FVA ILLNG++ WIFF++ + SFI YLKNIVVA
Sbjct: 27 SDGPGKNTTVNNEFDTIVLPVLYLIIFVASILLNGLAVWIFFHIRNKTSFIFYLKNIVVA 86
Query: 460 DFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKP 639
D +M+LTFPF+I+ D+G GPW +CR ++VLFY NMY SIVF G I DRY K+VKP
Sbjct: 87 DLIMTLTFPFRIVHDAGFGPWYFKFILCRYTSVLFYANMYTSIVFLGLISIDRYLKVVKP 146
Query: 640 LLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKA 819
S PN+ILTN + + C++LK+ LG WH+A
Sbjct: 147 FGDSRMYSVTFTKVLSICVWVIMAVLSLPNIILTNGQLTKENIHDCMKLKSPLGVKWHQA 206
Query: 820 SNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVVF 990
Y+ +F V LI Y AI+R I KS Q S K+ ++V VF
Sbjct: 207 VIYVNSCLFVAVLVILIGCYIAISRYIHKS--SRQFISQSSRKRKHNQSIRVVVAVF 261
>ref|XP_542837.1| PREDICTED: similar to G protein-coupled receptor 171 [Canis
familiaris].
Length = 319
Score = 120 bits (300), Expect = 3e-27
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 1/189 (0%)
Frame = +1
Query: 346 YFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMSLTFPFKILGDSGLGPW 522
+++VF+ GI+ +G + W F ++ + +YL N++ ADFL++L P KI+ D G+ PW
Sbjct: 21 FYLVFLVGIIGSGFATWAFVQNKTNHRCVSIYLINLLTADFLLTLALPVKIVVDLGVAPW 80
Query: 523 QLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSFXXXXXXXXXXXXXXXX 702
+L +F C+V+A L YINMY+SI+F F+ DR ++
Sbjct: 81 KLKIFHCQVTACLMYINMYLSIIFLAFVSIDRCLQLTYNSKVYRIQEPGFAKMISTVVWL 140
Query: 703 XXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIFVGIFWNVCSSLIIFYT 882
PNMI+ + ++E + C+E K E G +WH +N+I V IF N ++I
Sbjct: 141 MVLLIMVPNMIIPIKDIKERPNVGCMEFKKEFGRNWHLLTNFICVAIFLNFSVIILISNC 200
Query: 883 AITRKIFKS 909
+ R+++++
Sbjct: 201 LVIRQLYRN 209
>ref|XP_849866.1| PREDICTED: similar to Proteinase activated receptor 3 precursor
(PAR-3) (Thrombin receptor-like 2) (Coagulation factor
II receptor-like 2) [Canis familiaris].
Length = 379
Score = 84.3 bits (207), Expect = 2e-16
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Frame = +1
Query: 262 TMNATTT---QAPEESCPQ-----------NTLITQKIIPALYFVVFVAGILLNGVSGWI 399
T TTT + PEES + ++ K+IPA+Y +VFV G+ N V+ W
Sbjct: 60 TEGTTTTIKFKCPEESVSNLQVNNATMGYLRSSLSTKLIPAIYILVFVVGVPANVVTLWR 119
Query: 400 FFYVPSSKSFIVYLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMY 579
F+ S ++ N+ +ADFL +T PFKI W +CR + V+FY NMY
Sbjct: 120 LFFRTRSICMTIFYTNLAIADFLFCVTLPFKIAYHLNGNNWVFGEVMCRATTVIFYGNMY 179
Query: 580 VSIVFFGFIGFDRYYKIVKP 639
SI+ I RY IV P
Sbjct: 180 CSILLLACISISRYLAIVHP 199
>ref|NP_001139463.1| proteinase-activated receptor 2 [Canis lupus familiaris].
Length = 397
Score = 72.8 bits (177), Expect = 5e-13
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Frame = +1
Query: 319 ITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKS-FIVYLKNIVVADFLMSLTFPFKI 495
+T +P +Y +VF+ G+ NG++ W+F + K +VY+ N+ +AD L + FP KI
Sbjct: 73 LTTVFLPTVYTIVFMVGLPSNGMALWVFLFRTKKKHPAVVYMTNLALADLLSVVWFPLKI 132
Query: 496 LGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPL 642
W +C+V FY NMY SI+F + RY+ IV P+
Sbjct: 133 AYHIHGNNWVYGEALCKVLIGFFYGNMYCSILFMTCLSVQRYWVIVNPI 181
>ref|XP_544462.2| PREDICTED: similar to Platelet activating factor receptor (PAF-R)
[Canis familiaris].
Length = 343
Score = 70.5 bits (171), Expect = 2e-12
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Frame = +1
Query: 331 IIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI---VYLKNIVVADFLMSLTFPFKILG 501
+ P +Y ++FV G++ N W+F + SK +++ N+ +AD L +T P I+
Sbjct: 18 LFPIVYSIIFVLGVVANSYVLWVFACLYPSKKLNEIKIFMVNLTMADLLFLVTLPLWIIY 77
Query: 502 DSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTS 651
G W L F+C ++ F+IN Y S+ F I ++R+ + +P+ T+
Sbjct: 78 YHNQGNWILPSFLCNLAGCFFFINTYCSVAFLAVITYNRFQAVTRPIKTA 127
>ref|NP_001005764.1| P2Y purinoceptor 1 [Canis lupus familiaris].
Length = 373
Score = 70.1 bits (170), Expect = 3e-12
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQK-----IIPALYFVVFVAGILLNGVSGWIFF-YVPSSKSF 429
N+T + A + P +T+ +PA+Y +VFV G L N V+ W+F ++
Sbjct: 27 NSTASAAAAAAAPFTCALTKTGFQFYYLPAVYILVFVTGFLGNSVAIWMFARHMRPWSGI 86
Query: 430 IVYLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIG 609
VY+ N+ +ADFL LT P I W L +C++ +F+ N+Y SI+F I
Sbjct: 87 SVYMFNLALADFLYVLTLPALIFYYFNKTDWTLGDAMCKLQRFIFHANLYGSILFLTCIS 146
Query: 610 FDRYYKIVKPL 642
RY +V PL
Sbjct: 147 AHRYSGVVYPL 157
>ref|NP_001180602.1| P2Y purinoceptor 1 [Canis lupus familiaris].
Length = 373
Score = 70.1 bits (170), Expect = 3e-12
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQK-----IIPALYFVVFVAGILLNGVSGWIFF-YVPSSKSF 429
N+T + A + P +T+ +PA+Y +VFV G L N V+ W+F ++
Sbjct: 27 NSTASAAAAAAAPFTCALTKTGFQFYYLPAVYILVFVTGFLGNSVAIWMFARHMRPWSGI 86
Query: 430 IVYLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIG 609
VY+ N+ +ADFL LT P I W L +C++ +F+ N+Y SI+F I
Sbjct: 87 SVYMFNLALADFLYVLTLPALIFYYFNKTDWTLGDAMCKLQRFIFHANLYGSILFLTCIS 146
Query: 610 FDRYYKIVKPL 642
RY +V PL
Sbjct: 147 AHRYSGVVYPL 157
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,424,939
Number of extensions: 814630
Number of successful extensions: 2645
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 2567
Number of HSP's successfully gapped: 64
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013075
(990 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132536.1| PREDICTED: p2Y purinoceptor 14-like [Sus scr... 395 e-110
Alignment gi|XP_003132539.2| PREDICTED: p2Y purinoceptor 13-like [Sus scr... 209 2e-54
Alignment gi|XP_003132537.1| PREDICTED: G-protein coupled receptor 87 [Su... 176 2e-44
Alignment gi|NP_001166989.1| purinergic receptor P2Y12 [Sus scrofa]. 168 4e-42
Alignment gi|XP_003135078.2| PREDICTED: LOW QUALITY PROTEIN: probable G-p... 94 1e-19
Alignment gi|XP_003123759.1| PREDICTED: proteinase-activated receptor 3-l... 84 9e-17
Alignment gi|XP_003123761.1| PREDICTED: proteinase-activated receptor 2-l... 74 1e-13
Alignment gi|XP_001926821.1| PREDICTED: p2Y purinoceptor 1 [Sus scrofa]. 71 1e-12
Alignment gi|XP_003127831.1| PREDICTED: platelet-activating factor recept... 70 1e-12
Alignment gi|XP_003359144.1| PREDICTED: G-protein coupled receptor 109A-l... 70 2e-12
>ref|XP_003132536.1| PREDICTED: p2Y purinoceptor 14-like [Sus scrofa].
Length = 338
Score = 395 bits (1016), Expect = e-110
Identities = 204/242 (84%), Positives = 206/242 (85%)
Frame = +1
Query: 265 MNATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLK 444
MNATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLK
Sbjct: 2 MNATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLK 61
Query: 445 NIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYY 624
NIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYY
Sbjct: 62 NIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYY 121
Query: 625 KIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGP 804
KIVKPLLTSF PNMILTNQSVREGTRIKCVELKNELG
Sbjct: 122 KIVKPLLTSFVQSVTSSKLLSVLVWSLTLLLAVPNMILTNQSVREGTRIKCVELKNELGR 181
Query: 805 HWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
+WHKASNYIFVGIFW V SLIIFYTAITRKIFKSHL +K SS KK SRNIFSIM V
Sbjct: 182 NWHKASNYIFVGIFWIVFLSLIIFYTAITRKIFKSHLKARKNSSSVKKKSSRNIFSIMFV 241
Query: 985 VF 990
F
Sbjct: 242 FF 243
>ref|XP_003132539.2| PREDICTED: p2Y purinoceptor 13-like [Sus scrofa].
Length = 480
Score = 209 bits (532), Expect = 2e-54
Identities = 104/244 (42%), Positives = 139/244 (56%), Gaps = 2/244 (0%)
Frame = +1
Query: 265 MNATTTQA--PEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVY 438
MNAT + E CP++ Q + PA+Y VF GILLN ++ W+F Y+PSS +FIVY
Sbjct: 148 MNATVVKGFNGSERCPRDMQTAQLVFPAIYTAVFFIGILLNALALWVFIYIPSSSTFIVY 207
Query: 439 LKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDR 618
LKN +VAD +M+LT PFKIL DS LGPWQL FVCR SAV+FY MYV I+ G I FDR
Sbjct: 208 LKNTLVADLIMTLTLPFKILSDSRLGPWQLRAFVCRFSAVIFYETMYVGIILLGLIAFDR 267
Query: 619 YYKIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNEL 798
+ KI+KP F PNMIL+N+ + KC LK L
Sbjct: 268 FLKIIKPFGKFFVQKPAFARAISSLVWLVLFLISLPNMILSNKEATPSSVKKCASLKGPL 327
Query: 799 GPHWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIM 978
G WH+ NYI IFW V + +++FY I +K++ S+ + S K++ +F ++
Sbjct: 328 GLKWHEVVNYICQFIFWTVFALMLLFYVVIAKKVYNSYRKAKSKDSKNNKRLEGKVFVVV 387
Query: 979 VVVF 990
V F
Sbjct: 388 AVFF 391
>ref|XP_003132537.1| PREDICTED: G-protein coupled receptor 87 [Sus scrofa].
Length = 358
Score = 176 bits (445), Expect = 2e-44
Identities = 102/241 (42%), Positives = 133/241 (55%), Gaps = 1/241 (0%)
Frame = +1
Query: 271 ATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNI 450
+ + AP ++ N ++P LY V+FVA ILLNG++ WIFF++ + SFI YLKNI
Sbjct: 24 SNVSDAPGKNATINNEFNTIVLPLLYLVIFVASILLNGLAVWIFFHIRNKTSFIFYLKNI 83
Query: 451 VVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKI 630
VVAD +M+LTFPF+I+ D+G GPW +CR ++VLFY NMY SIVF G I DRY K+
Sbjct: 84 VVADLIMTLTFPFRIVHDAGFGPWYFKFILCRYTSVLFYANMYTSIVFLGLISIDRYLKV 143
Query: 631 VKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTN-QSVREGTRIKCVELKNELGPH 807
VKP S PN+ILTN Q RE +CV+LK+ LG
Sbjct: 144 VKPFGDSRMYSVTFTKVLSICVWVLMAVLSLPNIILTNGQPTRENIH-ECVKLKSPLGVK 202
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVV 987
WH A Y+ +F V LI Y AI+R I KS Q S K+ ++V V
Sbjct: 203 WHNAIIYVNSCLFVAVLVILIGCYIAISRYIHKS--SRQFISQSSRKRKHNQSIRVVVAV 260
Query: 988 F 990
F
Sbjct: 261 F 261
>ref|NP_001166989.1| purinergic receptor P2Y12 [Sus scrofa].
Length = 338
Score = 168 bits (426), Expect = 4e-42
Identities = 91/239 (38%), Positives = 132/239 (55%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N T+ C ++ ITQ + P LY V+F G++ N ++ IFF + S +FI++LKN
Sbjct: 3 NLTSAPGNGSLCIRDYKITQVLFPLLYTVLFFVGLITNSLAMRIFFQIRSKSNFIIFLKN 62
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
V++D LM LTFPFKIL D+ LG L FVC+V++V+FY MY+SI F G I DRY K
Sbjct: 63 TVISDLLMILTFPFKILSDAKLGTGPLRAFVCQVTSVIFYFTMYISISFLGLITIDRYQK 122
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPH 807
+P TS PNMILTN+ + + KC LK+E G
Sbjct: 123 TTRPFKTSNPNNLLGAKILSVVIWAFMFLLSLPNMILTNRRPSDNVK-KCSFLKSEFGLV 181
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
WH+ NYI IFW +++ YT IT++++KS++ + KK++ +F I+ V
Sbjct: 182 WHEIVNYICQVIFWINFLIVVVCYTLITKELYKSYVRTRGVGKVPKKKVNIKVFIIIAV 240
>ref|XP_003135078.2| PREDICTED: LOW QUALITY PROTEIN: probable G-protein coupled receptor
34-like [Sus scrofa].
Length = 381
Score = 94.0 bits (232), Expect = 1e-19
Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 2/231 (0%)
Frame = +1
Query: 298 SCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMS 474
+C + + ++ Y V+F+ G++ N ++ ++F + ++ I +YL N+ VAD L+
Sbjct: 45 ACSMDETLLSSVLTTFYSVIFIMGLVGNIIALYVFLGIHRKRNSIQIYLLNVAVADLLLI 104
Query: 475 LTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSF 654
PF+I+ W L V +C+V LFY+NMY+SI+ GFI DRY KI + +
Sbjct: 105 FCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQQRK 164
Query: 655 XXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIF 834
+ILT + + + C +++ N+I
Sbjct: 165 AITTKQSIYVCCAVWIIALAGFLTMIILTLKKGGHNSTM-CFHYRDKHNAKGEAIFNFIL 223
Query: 835 VGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSS-XXKKISRNIFSIMVV 984
V +FW + +I+ Y I + + + K +S +RN F ++++
Sbjct: 224 VVMFWLIFLLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLII 274
>ref|XP_003123759.1| PREDICTED: proteinase-activated receptor 3-like [Sus scrofa].
Length = 378
Score = 84.3 bits (207), Expect = 9e-17
Identities = 39/107 (36%), Positives = 59/107 (55%)
Frame = +1
Query: 319 ITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVADFLMSLTFPFKIL 498
++ K+IPA+Y +VF G+ N V+ W+ F+ S ++ N+ +ADFL +T PF+I
Sbjct: 92 LSTKLIPAIYILVFAVGVPANAVTLWMLFFRTRSIRMTIFYTNLAIADFLFCVTLPFRIA 151
Query: 499 GDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKP 639
W +CR + V+FY NMY SI+ I +RY IV P
Sbjct: 152 YHLNGNNWVFGEVMCRATTVIFYGNMYCSILLLACISINRYLAIVHP 198
>ref|XP_003123761.1| PREDICTED: proteinase-activated receptor 2-like [Sus scrofa].
Length = 397
Score = 74.3 bits (181), Expect = 1e-13
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 319 ITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKS-FIVYLKNIVVADFLMSLTFPFKI 495
+T +P +Y +VFV G+ NG++ W+F + K ++Y+ N+ +AD L + FP KI
Sbjct: 73 LTTVFLPVVYTIVFVVGLPSNGMALWVFLFRTKKKHPAVIYMANLALADLLSVIWFPLKI 132
Query: 496 LGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLL 645
W +C+V FY NMY SI+F + RY+ IV P++
Sbjct: 133 AYHIHGNNWVYGESLCKVLIGFFYGNMYCSILFMTCLSVQRYWVIVNPMV 182
>ref|XP_001926821.1| PREDICTED: p2Y purinoceptor 1 [Sus scrofa].
Length = 371
Score = 70.9 bits (172), Expect = 1e-12
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Frame = +1
Query: 271 ATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIF-FYVPSSKSFIVYLKN 447
A+T P + T +PA+Y +VF+ G L N V+ W+F F++ VY+ N
Sbjct: 31 ASTAAVPFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFN 90
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
+ +ADFL LT P I W +C++ +F++N+Y SI+F I RY
Sbjct: 91 LALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSG 150
Query: 628 IVKPL 642
+V PL
Sbjct: 151 VVYPL 155
>ref|XP_003127831.1| PREDICTED: platelet-activating factor receptor-like [Sus scrofa].
Length = 352
Score = 70.5 bits (171), Expect = 1e-12
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Frame = +1
Query: 289 PEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI---VYLKNIVVA 459
P +S ++ + P Y ++FV G++ N W+F V SK +++ N+ +A
Sbjct: 13 PNDSWRVDSEFRYTLFPIFYSIIFVLGVIANSYVLWVFARVYPSKKLNEIKIFMLNLTMA 72
Query: 460 DFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKP 639
D L +T P I+ G W L F+C ++ F+IN Y S+ F I ++R+ + +P
Sbjct: 73 DLLFLVTLPLWIIYYYHEGNWILPKFLCNLAGCFFFINTYCSVSFLAVITYNRFQAVTRP 132
Query: 640 LLTS 651
+ T+
Sbjct: 133 IKTA 136
>ref|XP_003359144.1| PREDICTED: G-protein coupled receptor 109A-like [Sus scrofa].
Length = 363
Score = 69.7 bits (169), Expect = 2e-12
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = +1
Query: 328 KIIPALYFVVFVAGILLNGVSGWIF-FYVPSSKSFIVYLKNIVVADFLMSLTFPFKILGD 504
K++P + + FV G+L NG++ WIF F++ S KS ++L N+ VADFL+ + PF
Sbjct: 28 KVLPPVVGLEFVFGLLGNGLALWIFCFHLKSWKSSRIFLFNLAVADFLLIICLPFLTDNY 87
Query: 505 SGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKP 639
W+ CR+ + +N SI+F + DRY+++V P
Sbjct: 88 VRKWDWRFGDIPCRIMLFMLAMNRQGSIIFLTVVAVDRYFRVVHP 132
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,170,891
Number of extensions: 504220
Number of successful extensions: 2081
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 70
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013075
(990 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_573463.1| P2Y purinoceptor 14 [Mus musculus]. 332 4e-91
Alignment gi|NP_001008497.1| P2Y purinoceptor 14 [Mus musculus]. 332 4e-91
Alignment gi|NP_083084.2| P2Y purinoceptor 13 [Mus musculus]. 191 8e-49
Alignment gi|NP_115775.1| G-protein coupled receptor 87 [Mus musculus]. 173 2e-43
Alignment gi|NP_081847.3| P2Y purinoceptor 12 [Mus musculus]. 172 4e-43
Alignment gi|NP_775574.1| probable G-protein coupled receptor 171 [Mus mu... 117 1e-26
Alignment gi|NP_035953.3| probable G-protein coupled receptor 34 [Mus mus... 96 3e-20
Alignment gi|NP_001074680.1| platelet-activating factor receptor [Mus mus... 77 2e-14
Alignment gi|NP_032000.3| proteinase-activated receptor 2 precursor [Mus ... 74 1e-13
Alignment gi|NP_034300.3| proteinase-activated receptor 3 precursor [Mus ... 74 1e-13
>ref|NP_573463.1| P2Y purinoceptor 14 [Mus musculus].
Length = 338
Score = 332 bits (850), Expect = 4e-91
Identities = 163/239 (68%), Positives = 187/239 (78%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N+TTT P + C NTLIT++IIP LY +VF+ G+LLNG+SGWIFFYVPSSKSFI+YLKN
Sbjct: 3 NSTTTDPPNQPCSWNTLITKQIIPVLYGMVFITGLLLNGISGWIFFYVPSSKSFIIYLKN 62
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
IVVADFLM LTFPFK+LGDSGLGPWQ+NVFVCRVSAV+FY+NMYVSIVFFG I FDRYYK
Sbjct: 63 IVVADFLMGLTFPFKVLGDSGLGPWQVNVFVCRVSAVIFYVNMYVSIVFFGLISFDRYYK 122
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPH 807
IVKPLLTS PN+ILTNQ V+E T+I+C+ELKNELG
Sbjct: 123 IVKPLLTSIVQSVNYSKLLSVLVWMLMLLLAVPNIILTNQGVKEVTKIQCMELKNELGRK 182
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
WHKASNYIFV IFW V LI+FYTAITRKIFKSHL +K +S +K SRNIFSI++V
Sbjct: 183 WHKASNYIFVSIFWVVFLLLIVFYTAITRKIFKSHLKSRKNSTSVKRKSSRNIFSIVLV 241
>ref|NP_001008497.1| P2Y purinoceptor 14 [Mus musculus].
Length = 338
Score = 332 bits (850), Expect = 4e-91
Identities = 163/239 (68%), Positives = 187/239 (78%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N+TTT P + C NTLIT++IIP LY +VF+ G+LLNG+SGWIFFYVPSSKSFI+YLKN
Sbjct: 3 NSTTTDPPNQPCSWNTLITKQIIPVLYGMVFITGLLLNGISGWIFFYVPSSKSFIIYLKN 62
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
IVVADFLM LTFPFK+LGDSGLGPWQ+NVFVCRVSAV+FY+NMYVSIVFFG I FDRYYK
Sbjct: 63 IVVADFLMGLTFPFKVLGDSGLGPWQVNVFVCRVSAVIFYVNMYVSIVFFGLISFDRYYK 122
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPH 807
IVKPLLTS PN+ILTNQ V+E T+I+C+ELKNELG
Sbjct: 123 IVKPLLTSIVQSVNYSKLLSVLVWMLMLLLAVPNIILTNQGVKEVTKIQCMELKNELGRK 182
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
WHKASNYIFV IFW V LI+FYTAITRKIFKSHL +K +S +K SRNIFSI++V
Sbjct: 183 WHKASNYIFVSIFWVVFLLLIVFYTAITRKIFKSHLKSRKNSTSVKRKSSRNIFSIVLV 241
>ref|NP_083084.2| P2Y purinoceptor 13 [Mus musculus].
Length = 337
Score = 191 bits (485), Expect = 8e-49
Identities = 100/245 (40%), Positives = 141/245 (57%), Gaps = 2/245 (0%)
Frame = +1
Query: 262 TMNATTTQA--PEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIV 435
T+N T Q E CP++T +TQ + P LY VVF+AGILLN V+ W+F ++PS+ +FIV
Sbjct: 4 TINTTGMQGFNKSERCPRDTRMTQLLFPVLYTVVFLAGILLNTVALWVFVHIPSNSTFIV 63
Query: 436 YLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFD 615
YLKN +VAD +M+L PFKIL DS L PWQL FVC +S+V+FY MYV I+ G I FD
Sbjct: 64 YLKNTLVADLIMALMLPFKILSDSHLAPWQLRGFVCTLSSVVFYETMYVGIMMLGLIAFD 123
Query: 616 RYYKIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNE 795
R+ KI+ P +F PNMIL ++ + KC LK+
Sbjct: 124 RFLKIIMPFRKTFVKKTAFAKTVSISVWSLMFFISLPNMILNKEATPSSVK-KCASLKSP 182
Query: 796 LGPHWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSI 975
LG WH+ ++ IFW V +++FY IT+K++ S+ + S K++ +F +
Sbjct: 183 LGLWWHQVVSHTCQFIFWAVFILMLLFYAVITKKVYNSYRKF-RSKDSRHKRLEVKVFIV 241
Query: 976 MVVVF 990
M V F
Sbjct: 242 MAVFF 246
>ref|NP_115775.1| G-protein coupled receptor 87 [Mus musculus].
Length = 359
Score = 173 bits (439), Expect = 2e-43
Identities = 102/247 (41%), Positives = 134/247 (54%)
Frame = +1
Query: 250 RSEKTMNATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSF 429
++ T N+T+ + S N T I+P LY V+FVA ILLNG++ WIFF++ + SF
Sbjct: 19 QASHTANSTSEGHGKNSTLHNKFDTI-ILPVLYLVIFVASILLNGLAVWIFFHIRNKTSF 77
Query: 430 IVYLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIG 609
I YLKNIVVAD +M+LTFPF+I+ D+G GPW +CR ++VLFY NMY SIVF G I
Sbjct: 78 IFYLKNIVVADLIMTLTFPFRIVRDAGFGPWYFEFILCRYTSVLFYANMYTSIVFLGLIS 137
Query: 610 FDRYYKIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELK 789
DRY K+VKP S PN+ILTN + C++LK
Sbjct: 138 VDRYLKVVKPFGDSRMYSITFTKVLSVCVWVIMAILSLPNIILTNGQPTKENIHDCMKLK 197
Query: 790 NELGPHWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIF 969
+ LG WH A Y+ +F V LI Y AI+R I KS Q S K+
Sbjct: 198 SPLGAKWHMAVTYVDSCLFVAVLVILIGCYIAISRYIHKS--SRQFISQSSRKRKHNQSI 255
Query: 970 SIMVVVF 990
++V VF
Sbjct: 256 RVVVAVF 262
>ref|NP_081847.3| P2Y purinoceptor 12 [Mus musculus].
Length = 347
Score = 172 bits (436), Expect = 4e-43
Identities = 95/245 (38%), Positives = 137/245 (55%), Gaps = 2/245 (0%)
Frame = +1
Query: 262 TMNATTTQAPEES--CPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIV 435
T +A TT +P S C ++ ITQ + P LY V+F AG++ N ++ IFF + S +FI+
Sbjct: 8 TTSANTTFSPGTSTLCVRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFII 67
Query: 436 YLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFD 615
+LKN V++D LM LTFPFKIL D+ LG L VC+V++V FY MY+SI F G I D
Sbjct: 68 FLKNTVISDLLMILTFPFKILSDAKLGAGPLRTLVCQVTSVTFYFTMYISISFLGLITID 127
Query: 616 RYYKIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNE 795
RY K +P TS PNMILTN+ ++ KC LK+E
Sbjct: 128 RYLKTTRPFKTSSPSNLLGAKILSVVIWAFMFLISLPNMILTNRRPKDKDVTKCSFLKSE 187
Query: 796 LGPHWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSI 975
G WH+ NYI IFW +I+ Y+ IT+++++S++ + KK++ +F I
Sbjct: 188 FGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKVPKKKVNVKVFII 247
Query: 976 MVVVF 990
+ V F
Sbjct: 248 IAVFF 252
>ref|NP_775574.1| probable G-protein coupled receptor 171 [Mus musculus].
Length = 319
Score = 117 bits (294), Expect = 1e-26
Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 1/189 (0%)
Frame = +1
Query: 346 YFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMSLTFPFKILGDSGLGPW 522
+++VF+ GI+ + + W F ++ + +YL N++ ADFL++L P KI+ D G+ PW
Sbjct: 21 FYLVFLIGIIGSCFATWAFIQKTTNHRCVSIYLINLLTADFLLTLALPVKIIVDLGVAPW 80
Query: 523 QLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSFXXXXXXXXXXXXXXXX 702
+L +F C+V+A L YINMY+SI+F F+ DR +++
Sbjct: 81 KLRIFHCQVTACLIYINMYLSIIFLAFVSIDRCLQLIHSCKIYRIQEPGFAKMISAVVWL 140
Query: 703 XXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIFVGIFWNVCSSLIIFYT 882
PNM++ + ++E + + C+E K E G +WH +N+I V IF N ++I
Sbjct: 141 MVLLIMVPNMVIPIKDIKEKSNVGCMEFKKEFGRNWHLLTNFICVAIFLNFSVIILISNF 200
Query: 883 AITRKIFKS 909
R+++++
Sbjct: 201 LAIRQLYRN 209
>ref|NP_035953.3| probable G-protein coupled receptor 34 [Mus musculus].
Length = 375
Score = 96.3 bits (238), Expect = 3e-20
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 2/231 (0%)
Frame = +1
Query: 298 SCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMS 474
SCP + + ++ Y V+F+ G++ N ++ ++F + ++ I +YL N+ VAD L+
Sbjct: 38 SCPMDEKLLSTVLTTFYSVIFLVGLVGNIIALYVFLGIHRKRNSIQIYLLNVAVADLLLI 97
Query: 475 LTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSF 654
PF+I+ W L V +C+V LFY+NMY+SI+ GFI DRY KI + +
Sbjct: 98 FCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQQRR 157
Query: 655 XXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIF 834
+ILT + + + C ++ N++
Sbjct: 158 AITTKQSIYVCCIVWTVALAGFLTMIILTLKKGGHNSTM-CFHYRDRHNAKGEAIFNFVL 216
Query: 835 VGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSS-XXKKISRNIFSIMVV 984
V +FW + +I+ Y I + + + K +S +RN F ++++
Sbjct: 217 VVMFWLIFLLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLII 267
>ref|NP_001074680.1| platelet-activating factor receptor [Mus musculus].
Length = 341
Score = 77.0 bits (188), Expect = 2e-14
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Frame = +1
Query: 331 IIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI---VYLKNIVVADFLMSLTFPFKILG 501
+ P +Y V+F+ G++ NG W+F + SK +++ N+ +AD L +T P I+
Sbjct: 17 LFPIVYSVIFILGVVANGYVLWVFANLYPSKKLNEIKIFMVNLTMADLLFLITLPLWIVY 76
Query: 502 DSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTS 651
G W L F+C V+ LF+IN Y S+ F G I ++RY + P+ T+
Sbjct: 77 YYNEGDWILPNFLCNVAGCLFFINTYCSVAFLGVITYNRYQAVAYPIKTA 126
>ref|NP_032000.3| proteinase-activated receptor 2 precursor [Mus musculus].
Length = 399
Score = 74.3 bits (181), Expect = 1e-13
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Frame = +1
Query: 319 ITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKS-FIVYLKNIVVADFLMSLTFPFKI 495
+T +P +Y +VFV G+ NG++ WIF + K ++Y+ N+ +AD L + FP KI
Sbjct: 75 LTTVFLPVVYIIVFVIGLPSNGMALWIFLFRTKKKHPAVIYMANLALADLLSVIWFPLKI 134
Query: 496 LGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPL 642
W +C+V FY NMY SI+F + RY+ IV P+
Sbjct: 135 SYHLHGNNWVYGEALCKVLIGFFYGNMYCSILFMTCLSVQRYWVIVNPM 183
>ref|NP_034300.3| proteinase-activated receptor 3 precursor [Mus musculus].
Length = 369
Score = 74.3 bits (181), Expect = 1e-13
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Frame = +1
Query: 271 ATTTQAPEESCPQNTLIT----------------QKIIPALYFVVFVAGILLNGVSGWIF 402
ATTT E CP++++ T ++IPA+Y ++FV G+ N V+ W
Sbjct: 61 ATTTIKAE--CPEDSISTLHVNNATIGYLRSSLSTQVIPAIYILLFVVGVPANIVTLWKL 118
Query: 403 FYVPSSKSFIVYLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYV 582
S S +++ N+ +AD L +T PFKI W CR++ V+FY NMY
Sbjct: 119 SLRTKSISLVIFHTNLAIADLLFCVTLPFKIAYHLNGNNWVFGEVTCRITTVVFYGNMYC 178
Query: 583 SIVFFGFIGFDRYYKIVKP 639
+I+ +G +RY P
Sbjct: 179 AILILTCMGINRYLATAHP 197
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,813,203
Number of extensions: 685508
Number of successful extensions: 2712
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 2593
Number of HSP's successfully gapped: 88
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013075
(990 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074924.1| P2Y purinoceptor 14 [Homo sapiens]. 346 2e-95
Alignment gi|NP_055694.3| P2Y purinoceptor 14 [Homo sapiens]. 346 2e-95
Alignment gi|NP_795713.2| P2Y purinoceptor 13 [Homo sapiens]. 201 7e-52
Alignment gi|NP_795345.1| P2Y purinoceptor 12 [Homo sapiens]. 176 2e-44
Alignment gi|NP_073625.1| P2Y purinoceptor 12 [Homo sapiens]. 176 2e-44
Alignment gi|NP_076404.3| G-protein coupled receptor 87 [Homo sapiens]. 172 6e-43
Alignment gi|NP_037440.3| probable G-protein coupled receptor 171 [Homo s... 118 7e-27
Alignment gi|NP_001091048.1| probable G-protein coupled receptor 34 [Homo... 96 7e-20
Alignment gi|NP_005291.1| probable G-protein coupled receptor 34 [Homo sa... 96 7e-20
Alignment gi|NP_004092.1| proteinase-activated receptor 3 precursor [Homo... 87 3e-17
>ref|NP_001074924.1| P2Y purinoceptor 14 [Homo sapiens].
Length = 338
Score = 346 bits (887), Expect = 2e-95
Identities = 173/242 (71%), Positives = 193/242 (79%)
Frame = +1
Query: 265 MNATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLK 444
+N+T+TQ P+ESC QN LITQ+IIP LY +VF+AGILLNGVSGWIFFYVPSSKSFI+YLK
Sbjct: 2 INSTSTQPPDESCSQNLLITQQIIPVLYCMVFIAGILLNGVSGWIFFYVPSSKSFIIYLK 61
Query: 445 NIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYY 624
NIV+ADF+MSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFY+NMYVSIVFFG I FDRYY
Sbjct: 62 NIVIADFVMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYVNMYVSIVFFGLISFDRYY 121
Query: 625 KIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGP 804
KIVKPL TSF PN+ILTNQSVRE T+IKC+ELK+ELG
Sbjct: 122 KIVKPLWTSFIQSVSYSKLLSVIVWMLMLLLAVPNIILTNQSVREVTQIKCIELKSELGR 181
Query: 805 HWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
WHKASNYIFV IFW V LI+FYTAIT+KIFKSHL + +S KK SRNIFSI+ V
Sbjct: 182 KWHKASNYIFVAIFWIVFLLLIVFYTAITKKIFKSHLKSSRNSTSVKKKSSRNIFSIVFV 241
Query: 985 VF 990
F
Sbjct: 242 FF 243
>ref|NP_055694.3| P2Y purinoceptor 14 [Homo sapiens].
Length = 338
Score = 346 bits (887), Expect = 2e-95
Identities = 173/242 (71%), Positives = 193/242 (79%)
Frame = +1
Query: 265 MNATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLK 444
+N+T+TQ P+ESC QN LITQ+IIP LY +VF+AGILLNGVSGWIFFYVPSSKSFI+YLK
Sbjct: 2 INSTSTQPPDESCSQNLLITQQIIPVLYCMVFIAGILLNGVSGWIFFYVPSSKSFIIYLK 61
Query: 445 NIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYY 624
NIV+ADF+MSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFY+NMYVSIVFFG I FDRYY
Sbjct: 62 NIVIADFVMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYVNMYVSIVFFGLISFDRYY 121
Query: 625 KIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGP 804
KIVKPL TSF PN+ILTNQSVRE T+IKC+ELK+ELG
Sbjct: 122 KIVKPLWTSFIQSVSYSKLLSVIVWMLMLLLAVPNIILTNQSVREVTQIKCIELKSELGR 181
Query: 805 HWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVV 984
WHKASNYIFV IFW V LI+FYTAIT+KIFKSHL + +S KK SRNIFSI+ V
Sbjct: 182 KWHKASNYIFVAIFWIVFLLLIVFYTAITKKIFKSHLKSSRNSTSVKKKSSRNIFSIVFV 241
Query: 985 VF 990
F
Sbjct: 242 FF 243
>ref|NP_795713.2| P2Y purinoceptor 13 [Homo sapiens].
Length = 354
Score = 201 bits (512), Expect = 7e-52
Identities = 102/246 (41%), Positives = 138/246 (56%), Gaps = 2/246 (0%)
Frame = +1
Query: 259 KTMNATTTQA--PEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI 432
+ MN T Q E CP++T I Q + PALY VVF+ GILLN ++ W+F ++PSS +FI
Sbjct: 20 EAMNTTVMQGFNRSERCPRDTRIVQLVFPALYTVVFLTGILLNTLALWVFVHIPSSSTFI 79
Query: 433 VYLKNIVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGF 612
+YLKN +VAD +M+L PFKIL DS L PWQL FVCR S+V+FY MYV IV G I F
Sbjct: 80 IYLKNTLVADLIMTLMLPFKILSDSHLAPWQLRAFVCRFSSVIFYETMYVGIVLLGLIAF 139
Query: 613 DRYYKIVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKN 792
DR+ KI++PL F PN IL+N+ + KC LK
Sbjct: 140 DRFLKIIRPLRNIFLKKPVFAKTVSIFIWFFLFFISLPNTILSNKEATPSSVKKCASLKG 199
Query: 793 ELGPHWHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFS 972
LG WH+ N I IFW V +++FY I +K++ S+ + KK+ +F
Sbjct: 200 PLGLKWHQMVNNICQFIFWTVFILMLVFYVVIAKKVYDSYRKSKSKDRKNNKKLEGKVFV 259
Query: 973 IMVVVF 990
++ V F
Sbjct: 260 VVAVFF 265
>ref|NP_795345.1| P2Y purinoceptor 12 [Homo sapiens].
Length = 342
Score = 176 bits (447), Expect = 2e-44
Identities = 94/241 (39%), Positives = 134/241 (55%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N T+ C ++ ITQ + P LY V+F G++ NG++ IFF + S +FI++LKN
Sbjct: 6 NLTSAPGNTSLCTRDYKITQVLFPLLYTVLFFVGLITNGLAMRIFFQIRSKSNFIIFLKN 65
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
V++D LM LTFPFKIL D+ LG L FVC+V++V+FY MY+SI F G I DRY K
Sbjct: 66 TVISDLLMILTFPFKILSDAKLGTGPLRTFVCQVTSVIFYFTMYISISFLGLITIDRYQK 125
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPH 807
+P TS PNMILTN+ R+ KC LK+E G
Sbjct: 126 TTRPFKTSNPKNLLGAKILSVVIWAFMFLLSLPNMILTNRQPRDKNVKKCSFLKSEFGLV 185
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVV 987
WH+ NYI IFW +I+ YT IT+++++S++ + KK++ +F I+ V
Sbjct: 186 WHEIVNYICQVIFWINFLIVIVCYTLITKELYRSYVRTRGVGKVPRKKVNVKVFIIIAVF 245
Query: 988 F 990
F
Sbjct: 246 F 246
>ref|NP_073625.1| P2Y purinoceptor 12 [Homo sapiens].
Length = 342
Score = 176 bits (447), Expect = 2e-44
Identities = 94/241 (39%), Positives = 134/241 (55%)
Frame = +1
Query: 268 NATTTQAPEESCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKN 447
N T+ C ++ ITQ + P LY V+F G++ NG++ IFF + S +FI++LKN
Sbjct: 6 NLTSAPGNTSLCTRDYKITQVLFPLLYTVLFFVGLITNGLAMRIFFQIRSKSNFIIFLKN 65
Query: 448 IVVADFLMSLTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYK 627
V++D LM LTFPFKIL D+ LG L FVC+V++V+FY MY+SI F G I DRY K
Sbjct: 66 TVISDLLMILTFPFKILSDAKLGTGPLRTFVCQVTSVIFYFTMYISISFLGLITIDRYQK 125
Query: 628 IVKPLLTSFXXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPH 807
+P TS PNMILTN+ R+ KC LK+E G
Sbjct: 126 TTRPFKTSNPKNLLGAKILSVVIWAFMFLLSLPNMILTNRQPRDKNVKKCSFLKSEFGLV 185
Query: 808 WHKASNYIFVGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVV 987
WH+ NYI IFW +I+ YT IT+++++S++ + KK++ +F I+ V
Sbjct: 186 WHEIVNYICQVIFWINFLIVIVCYTLITKELYRSYVRTRGVGKVPRKKVNVKVFIIIAVF 245
Query: 988 F 990
F
Sbjct: 246 F 246
>ref|NP_076404.3| G-protein coupled receptor 87 [Homo sapiens].
Length = 358
Score = 172 bits (435), Expect = 6e-43
Identities = 95/220 (43%), Positives = 122/220 (55%)
Frame = +1
Query: 331 IIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVADFLMSLTFPFKILGDSG 510
++P LY ++FVA ILLNG++ WIFF++ + SFI YLKNIVVAD +M+LTFPF+I+ D+G
Sbjct: 44 VLPVLYLIIFVASILLNGLAVWIFFHIRNKTSFIFYLKNIVVADLIMTLTFPFRIVHDAG 103
Query: 511 LGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSFXXXXXXXXXXXX 690
GPW +CR ++VLFY NMY SIVF G I DRY K+VKP S
Sbjct: 104 FGPWYFKFILCRYTSVLFYANMYTSIVFLGLISIDRYLKVVKPFGDSRMYSITFTKVLSV 163
Query: 691 XXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIFVGIFWNVCSSLI 870
PN+ILTN E C +LK+ LG WH A Y+ +F V LI
Sbjct: 164 CVWVIMAVLSLPNIILTNGQPTEDNIHDCSKLKSPLGVKWHTAVTYVNSCLFVAVLVILI 223
Query: 871 IFYTAITRKIFKSHLXXQKXXSSXXKKISRNIFSIMVVVF 990
Y AI+R I KS Q S K+ ++V VF
Sbjct: 224 GCYIAISRYIHKS--SRQFISQSSRKRKHNQSIRVVVAVF 261
>ref|NP_037440.3| probable G-protein coupled receptor 171 [Homo sapiens].
Length = 319
Score = 118 bits (296), Expect = 7e-27
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 1/189 (0%)
Frame = +1
Query: 346 YFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMSLTFPFKILGDSGLGPW 522
+++VF+ GI+ + + W F ++ + +YL N++ ADFL++L P KI+ D G+ PW
Sbjct: 21 FYLVFLVGIIGSCFATWAFIQKNTNHRCVSIYLINLLTADFLLTLALPVKIVVDLGVAPW 80
Query: 523 QLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSFXXXXXXXXXXXXXXXX 702
+L +F C+V+A L YINMY+SI+F F+ DR ++
Sbjct: 81 KLKIFHCQVTACLIYINMYLSIIFLAFVSIDRCLQLTHSCKIYRIQEPGFAKMISTVVWL 140
Query: 703 XXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIFVGIFWNVCSSLIIFYT 882
PNM++ + ++E + + C+E K E G +WH +N+I V IF N + ++I
Sbjct: 141 MVLLIMVPNMMIPIKDIKEKSNVGCMEFKKEFGRNWHLLTNFICVAIFLNFSAIILISNC 200
Query: 883 AITRKIFKS 909
+ R+++++
Sbjct: 201 LVIRQLYRN 209
>ref|NP_001091048.1| probable G-protein coupled receptor 34 [Homo sapiens].
Length = 381
Score = 95.5 bits (236), Expect = 7e-20
Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 2/231 (0%)
Frame = +1
Query: 298 SCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMS 474
+CP + + ++ Y V+F+ G++ N ++ ++F + ++ I +YL N+ +AD L+
Sbjct: 45 TCPMDEKLLSTVLTTSYSVIFIVGLVGNIIALYVFLGIHRKRNSIQIYLLNVAIADLLLI 104
Query: 475 LTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSF 654
PF+I+ W L V +C+V LFY+NMY+SI+ GFI DRY KI + +
Sbjct: 105 FCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQQRK 164
Query: 655 XXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIF 834
+ILT + + + C +++ N+I
Sbjct: 165 AITTKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNSTM-CFHYRDKHNAKGEAIFNFIL 223
Query: 835 VGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSS-XXKKISRNIFSIMVV 984
V +FW + +I+ Y I + + + K +S +RN F ++++
Sbjct: 224 VVMFWLIFLLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLII 274
>ref|NP_005291.1| probable G-protein coupled receptor 34 [Homo sapiens].
Length = 381
Score = 95.5 bits (236), Expect = 7e-20
Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 2/231 (0%)
Frame = +1
Query: 298 SCPQNTLITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFI-VYLKNIVVADFLMS 474
+CP + + ++ Y V+F+ G++ N ++ ++F + ++ I +YL N+ +AD L+
Sbjct: 45 TCPMDEKLLSTVLTTSYSVIFIVGLVGNIIALYVFLGIHRKRNSIQIYLLNVAIADLLLI 104
Query: 475 LTFPFKILGDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKPLLTSF 654
PF+I+ W L V +C+V LFY+NMY+SI+ GFI DRY KI + +
Sbjct: 105 FCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQQRK 164
Query: 655 XXXXXXXXXXXXXXXXXXXXXXXPNMILTNQSVREGTRIKCVELKNELGPHWHKASNYIF 834
+ILT + + + C +++ N+I
Sbjct: 165 AITTKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNSTM-CFHYRDKHNAKGEAIFNFIL 223
Query: 835 VGIFWNVCSSLIIFYTAITRKIFKSHLXXQKXXSS-XXKKISRNIFSIMVV 984
V +FW + +I+ Y I + + + K +S +RN F ++++
Sbjct: 224 VVMFWLIFLLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLII 274
>ref|NP_004092.1| proteinase-activated receptor 3 precursor [Homo sapiens].
Length = 374
Score = 86.7 bits (213), Expect = 3e-17
Identities = 42/107 (39%), Positives = 60/107 (56%)
Frame = +1
Query: 319 ITQKIIPALYFVVFVAGILLNGVSGWIFFYVPSSKSFIVYLKNIVVADFLMSLTFPFKIL 498
++ K+IPA+Y +VFV G+ N V+ W+ F+ S V+ N+ +ADFL +T PFKI
Sbjct: 92 LSTKLIPAIYLLVFVVGVPANAVTLWMLFFRTRSICTTVFYTNLAIADFLFCVTLPFKIA 151
Query: 499 GDSGLGPWQLNVFVCRVSAVLFYINMYVSIVFFGFIGFDRYYKIVKP 639
W +CR + V+FY NMY SI+ I +RY IV P
Sbjct: 152 YHLNGNNWVFGEVLCRATTVIFYGNMYCSILLLACISINRYLAIVHP 198
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,869,173
Number of extensions: 808770
Number of successful extensions: 2782
Number of sequences better than 1.0e-05: 114
Number of HSP's gapped: 2629
Number of HSP's successfully gapped: 114
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013075
(990 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1318 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1318 bits (665), Expect = 0.0
Identities = 733/755 (97%), Gaps = 2/755 (0%)
Strand = Plus / Minus
Query: 237 aggtctcgccctcagaagtgagaagacgatgaatgccaccaccacccaggcccccgagga 296
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 99456820 aggtctcgccctcagaagtgagaagatgatgaatgccaccaccacccaggcccccgagga 99456761
Query: 297 gtcctgcccccagaacaccctcatcacccagaaaatcatccccgcgctgtacttcgtggt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456760 gtcctgcccccagaacaccctcatcacccagaaaatcatccccgcgctgtacttcgtggt 99456701
Query: 357 cttcgtggctggcatcctactcaatggcgtgtcggggtggatatttttctacgtgcccag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456700 cttcgtggctggcatcctactcaatggcgtgtcggggtggatatttttctacgtgcccag 99456641
Query: 417 ctccaagagtttcattgtctatctcaaaaatattgttgttgctgacttcctgatgagcct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456640 ctccaagagtttcattgtctatctcaaaaatattgttgttgctgacttcctgatgagcct 99456581
Query: 477 gacttttcccttcaagatcctgggcgactcgggcctcgggccctggcagctgaacgtgtt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456580 gacttttcccttcaagatcctgggcgactcgggcctcgggccctggcagctgaacgtgtt 99456521
Query: 537 cgtgtgcagggtctccgccgtgctcttctacatcaacatgtacgtcagcatcgtgttctt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456520 cgtgtgcagggtctccgccgtgctcttctacatcaacatgtacgtcagcatcgtgttctt 99456461
Query: 597 cgggttcatcggcttcgacaggtattataagatcgtaaagccacttctgacgtcattcgt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456460 cgggttcatcggcttcgacaggtattataagatcgtaaagccacttctgacgtcattcgt 99456401
Query: 657 ccagtccgtgacctctagcaaactcctatcggtgctggtgtggagcctcacactgctgtt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456400 ccagtccgtgacctctagcaaactcctatcggtgctggtgtggagcctcacactgctgtt 99456341
Query: 717 ggccgttcccaacatgatcctgaccaaccagagcgtcagggagggcacacgcattaagtg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99456340 ggccgttcccaacatgatcctgaccaaccagagcgtcagggagggcacacgcattaagtg 99456281
Query: 777 tgtggaactgaaaaatgaactgggcccgcactggcacaaggcctccaactatatctttgt 836
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 99456280 tgtggaactgaaaaatgaactgggccgcaactggcacaaggcctccaactatatctttgt 99456221
Query: 837 aggcatcttctggaatgtgtgttcttccctta-tcatcttctacactgctatcacgagga 895
|||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 99456220 aggcatcttctggattgtgt-ttctttccttaatcatcttctacactgctatcacgagga 99456162
Query: 896 agatctttaagtcccaccttnaggnccagaagaantncagttcggntnagaagaaaatca 955
|||||||||||||||||||| ||| | ||||| | |||||||| | |||||||| |
Sbjct: 99456161 agatctttaagtcccaccttaaggccagaaagaattccagttcggttaagaagaaatcaa 99456102
Query: 956 gtcgcaatatattcagcatcatggtcgtggttttt 990
||||||||||||||||||||||| ||||| |||||
Sbjct: 99456101 gtcgcaatatattcagcatcatgttcgtgtttttt 99456067
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 131 ggatcattggtgaagaaacactttggccatttcaagatgacaagcactcaccgggctaaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99459640 ggatcattggtgaagaaacactttggccatttcaagatgacaagcactcaccgggctaaa 99459581
Query: 191 ttacttcattgaaaggaaacctcattttagacc 223
|||||||||||||||||||||||||||||||||
Sbjct: 99459580 ttacttcattgaaaggaaacctcattttagacc 99459548
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,378,633
Number of extensions: 119
Number of successful extensions: 119
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 990
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 969
Effective length of database: 2,808,413,156
Effective search space: 2721352348164
Effective search space used: 2721352348164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)