Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013079
(1026 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691716.1| PREDICTED: lipocalin 2 (oncogene 24p3)-like ... 263 1e-70
Alignment gi|XP_605012.3| PREDICTED: lipocalin 2 (oncogene 24p3)-like [Bo... 263 1e-70
Alignment gi|NP_777216.1| prostaglandin-H2 D-isomerase [Bos taurus]. 88 1e-17
Alignment gi|XP_002691754.1| PREDICTED: lipocalin 15-like [Bos taurus]. 62 1e-09
Alignment gi|XP_581087.2| PREDICTED: lipocalin 15-like [Bos taurus]. 62 1e-09
Alignment gi|XP_002689979.1| PREDICTED: similar to Equ c1 isoform 2 [Bos ... 59 7e-09
Alignment gi|XP_002691761.1| PREDICTED: hypothetical protein [Bos taurus]. 59 9e-09
Alignment gi|XP_001256190.2| PREDICTED: hypothetical protein [Bos taurus]. 59 9e-09
Alignment gi|XP_002689977.1| PREDICTED: salivary lipocalin-like [Bos taur... 58 1e-08
Alignment gi|XP_590993.1| PREDICTED: salivary lipocalin-like isoform 1 [B... 58 1e-08
>ref|XP_002691716.1| PREDICTED: lipocalin 2 (oncogene 24p3)-like [Bos taurus].
Length = 200
Score = 263 bits (673), Expect = 1e-70
Identities = 122/170 (71%), Positives = 145/170 (85%)
Frame = +1
Query: 286 APPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVST 465
APPLS++PLQPNFQADQFQGKWY VG+AGNA+KKEEQ KMY++ YELKEDGSYNV S
Sbjct: 31 APPLSRIPLQPNFQADQFQGKWYTVGVAGNAIKKEEQDPLKMYSSNYELKEDGSYNVTSI 90
Query: 466 LLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNN 645
LL+ LCD WIRTFVPS QPGQF LG+IK Y G++SY VRVV+T+Y+QFAIV+FKKV
Sbjct: 91 LLKDDLCDYWIRTFVPSSQPGQFTLGNIKSYRGIRSYTVRVVNTDYNQFAIVYFKKVQRK 150
Query: 646 QEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
+ YFK TLYGRTK L+PE++ENF+ FAKSLGL+DD+I+F V ID+CID Q
Sbjct: 151 KTYFKITLYGRTKELTPEVRENFINFAKSLGLTDDHIVFTVPIDRCIDDQ 200
>ref|XP_605012.3| PREDICTED: lipocalin 2 (oncogene 24p3)-like [Bos taurus].
Length = 200
Score = 263 bits (673), Expect = 1e-70
Identities = 122/170 (71%), Positives = 145/170 (85%)
Frame = +1
Query: 286 APPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVST 465
APPLS++PLQPNFQADQFQGKWY VG+AGNA+KKEEQ KMY++ YELKEDGSYNV S
Sbjct: 31 APPLSRIPLQPNFQADQFQGKWYTVGVAGNAIKKEEQDPLKMYSSNYELKEDGSYNVTSI 90
Query: 466 LLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNN 645
LL+ LCD WIRTFVPS QPGQF LG+IK Y G++SY VRVV+T+Y+QFAIV+FKKV
Sbjct: 91 LLKDDLCDYWIRTFVPSSQPGQFTLGNIKSYRGIRSYTVRVVNTDYNQFAIVYFKKVQRK 150
Query: 646 QEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
+ YFK TLYGRTK L+PE++ENF+ FAKSLGL+DD+I+F V ID+CID Q
Sbjct: 151 KTYFKITLYGRTKELTPEVRENFINFAKSLGLTDDHIVFTVPIDRCIDDQ 200
>ref|NP_777216.1| prostaglandin-H2 D-isomerase [Bos taurus].
Length = 191
Score = 87.8 bits (216), Expect = 1e-17
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 2/171 (1%)
Frame = +1
Query: 283 PAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGR-FKMYTTTYELKEDGSYNVV 459
PAP ++ LQPNF+ D+F G+W+ GLA N+ E+ + M + DG N+
Sbjct: 23 PAP--AQAALQPNFEEDKFLGRWFTSGLASNSSWFLEKKKVLSMCKSVVAPAADGGLNLT 80
Query: 460 STLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVS 639
ST LR C+ P+ PG + S ++ V V T+Y +A+++ + V
Sbjct: 81 STFLRKDQCETRTLLLRPAGPPGCYSYTSPHWSS---THEVSVAETDYETYALLYTEGVR 137
Query: 640 N-NQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCID 789
Q++ TLY R++ E+KE+F FAKSLG +++ I+F D+C++
Sbjct: 138 GPGQDFRMATLYSRSQNPRAEVKEHFTTFAKSLGFTEEGIVFLPKTDKCME 188
>ref|XP_002691754.1| PREDICTED: lipocalin 15-like [Bos taurus].
Length = 184
Score = 61.6 bits (148), Expect = 1e-09
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 1/168 (0%)
Frame = +1
Query: 283 PAPPLSKVPLQPNFQADQFQGKWYVVGLAGNA-VKKEEQGRFKMYTTTYELKEDGSYNVV 459
P + V +QP+F A++F G WYVV + + V ++ M T + G+ +V
Sbjct: 15 PPSAQADVLVQPDFDANKFSGLWYVVSMVSDCKVFLGKKDHLLMSTRDIKASAGGNLSVH 74
Query: 460 STLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVS 639
R C+ ++ G F++ L VRVV T+YS FA+V+ K
Sbjct: 75 MEFPRADGCNQADAEYLRVGAQGHFRV------PALGYLDVRVVDTDYSSFAVVYIYKEL 128
Query: 640 NNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQC 783
LY RT+ SP+ E F F ++GL D + D C
Sbjct: 129 EGALSTMVQLYSRTQEASPQALEAFQDFYPTVGLPADMVAMLPKSDLC 176
>ref|XP_581087.2| PREDICTED: lipocalin 15-like [Bos taurus].
Length = 184
Score = 61.6 bits (148), Expect = 1e-09
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 1/168 (0%)
Frame = +1
Query: 283 PAPPLSKVPLQPNFQADQFQGKWYVVGLAGNA-VKKEEQGRFKMYTTTYELKEDGSYNVV 459
P + V +QP+F A++F G WYVV + + V ++ M T + G+ +V
Sbjct: 15 PPSAQADVLVQPDFDANKFSGLWYVVSMVSDCKVFLGKKDHLLMSTRDIKASAGGNLSVH 74
Query: 460 STLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVS 639
R C+ ++ G F++ L VRVV T+YS FA+V+ K
Sbjct: 75 MEFPRADGCNQADAEYLRVGAQGHFRV------PALGYLDVRVVDTDYSSFAVVYIYKEL 128
Query: 640 NNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQC 783
LY RT+ SP+ E F F ++GL D + D C
Sbjct: 129 EGALSTMVQLYSRTQEASPQALEAFQDFYPTVGLPADMVAMLPKSDLC 176
>ref|XP_002689979.1| PREDICTED: similar to Equ c1 isoform 2 [Bos taurus].
Length = 232
Score = 58.9 bits (141), Expect = 7e-09
Identities = 39/159 (24%), Positives = 72/159 (45%)
Frame = +1
Query: 310 LQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLCD 489
++ NF + G+W+ + LA + +K E G + + L E+ S + +C
Sbjct: 23 VRSNFDIPEITGEWFSILLASDDREKIENGSMRFFVEYISLLENSSLFIKMHTKVNGVCT 82
Query: 490 NWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTTL 669
T + + G + + Y G + R++ NYSQ I + + S++ + + L
Sbjct: 83 ELPLTCDSTGEDGVYTVS----YDGENKF--RILQVNYSQHIIFYLENFSDSFKLLE--L 134
Query: 670 YGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCI 786
Y R SPELK FV + G+ +N+I +D+C+
Sbjct: 135 YAREPDTSPELKNEFVEICQKYGVVKENVIDLTKVDRCL 173
>ref|XP_002691761.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 790
Score = 58.5 bits (140), Expect = 9e-09
Identities = 31/97 (31%), Positives = 50/97 (51%)
Frame = +1
Query: 475 GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEY 654
GQ C W + QPG F + D G ++V T+Y+ FA++ KK S+ Q
Sbjct: 434 GQRCVTWSYELISQSQPGTFSV-DHSGEPGADPEEIQVYDTDYASFALLLSKKQSDLQRI 492
Query: 655 FKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFP 765
+ +L R + ++ + FV ++ GLSDD+I+FP
Sbjct: 493 LRVSLLCRIWAIQTQVLDKFVCLVRAQGLSDDSIVFP 529
>ref|XP_001256190.2| PREDICTED: hypothetical protein [Bos taurus].
Length = 282
Score = 58.5 bits (140), Expect = 9e-09
Identities = 31/97 (31%), Positives = 50/97 (51%)
Frame = +1
Query: 475 GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEY 654
GQ C W + QPG F + D G ++V T+Y+ FA++ KK S+ Q
Sbjct: 144 GQRCVTWSYELISQSQPGTFSV-DHSGEPGADPEEIQVYDTDYASFALLLSKKQSDLQRI 202
Query: 655 FKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFP 765
+ +L R + ++ + FV ++ GLSDD+I+FP
Sbjct: 203 LRVSLLCRIWAIQTQVLDKFVCLVRAQGLSDDSIVFP 239
>ref|XP_002689977.1| PREDICTED: salivary lipocalin-like [Bos taurus].
Length = 182
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 310 LQPNFQADQFQGKWYVVGLAG-NAVKKEEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLC 486
++ NF + G+WY + LA N K EE G +++ ++ E+ S +C
Sbjct: 23 VRSNFDIPEIAGEWYSILLASDNREKIEENGSMRVFVEYIDVLENSSLLFKFHTKVNGVC 82
Query: 487 DNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTT 666
+ + G F + Y G + R++ NYSQ I + + S++ + +
Sbjct: 83 TELSLVSDSTGEDGVFTIS----YDGENKF--RILQVNYSQHIIFYLENFSDSFKLLE-- 134
Query: 667 LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCI 786
LY R SPELK FV + G+ +N+I +D+C+
Sbjct: 135 LYAREPDTSPELKSEFVEICQKYGVVKENVIDLTKVDRCL 174
>ref|XP_590993.1| PREDICTED: salivary lipocalin-like isoform 1 [Bos taurus].
Length = 182
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 310 LQPNFQADQFQGKWYVVGLAG-NAVKKEEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLC 486
++ NF + G+WY + LA N K EE G +++ ++ E+ S +C
Sbjct: 23 VRSNFDIPEIAGEWYSILLASDNREKIEENGSMRVFVEYIDVLENSSLLFKFHTKVNGVC 82
Query: 487 DNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTT 666
+ + G F + Y G + R++ NYSQ I + + S++ + +
Sbjct: 83 TELSLVSDSTGEDGVFTIS----YDGENKF--RILQVNYSQHIIFYLENFSDSFKLLE-- 134
Query: 667 LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCI 786
LY R SPELK FV + G+ +N+I +D+C+
Sbjct: 135 LYAREPDTSPELKSEFVEICQKYGVVKENVIDLTKVDRCL 174
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,974,766
Number of extensions: 1056114
Number of successful extensions: 4440
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4420
Number of HSP's successfully gapped: 11
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013079
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013079
(1026 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548441.1| PREDICTED: similar to Neutrophil gelatinase-ass... 258 5e-69
Alignment gi|XP_862322.1| PREDICTED: similar to Neutrophil gelatinase-ass... 247 1e-65
Alignment gi|XP_548363.2| PREDICTED: similar to lipocalcin 12 [Canis fami... 106 3e-23
Alignment gi|NP_001003131.1| prostaglandin-H2 D-isomerase [Canis lupus fa... 92 8e-19
Alignment gi|XP_537790.1| PREDICTED: similar to MSFL2541 [Canis familiari... 63 5e-10
Alignment gi|XP_855342.1| PREDICTED: similar to alpha-2u globulin PGCL4 [... 62 1e-09
Alignment gi|XP_848918.1| PREDICTED: similar to MSFL2541 [Canis familiari... 57 3e-08
Alignment gi|XP_538807.2| PREDICTED: similar to AMBP protein precursor [C... 57 4e-08
>ref|XP_548441.1| PREDICTED: similar to Neutrophil gelatinase-associated lipocalin
precursor (NGAL) (P25) (25 kDa
alpha-2-microglobulin-related subunit of MMP-9)
(Lipocalin 2) (Oncogene 24p3) isoform 1 [Canis
familiaris].
Length = 198
Score = 258 bits (660), Expect = 5e-69
Identities = 121/173 (69%), Positives = 146/173 (84%)
Frame = +1
Query: 271 PNWIPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSY 450
P+ IPAPP KVPLQP+FQ DQFQGKWYV+G+AGN +KKE G+ KMYTTTYELK+D SY
Sbjct: 25 PSLIPAPPPLKVPLQPDFQHDQFQGKWYVIGIAGNILKKEGHGQLKMYTTTYELKDDQSY 84
Query: 451 NVVSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFK 630
NV STLLR + CD W R FVPS QPGQF LGDI+ Y G+QSY+V+VV+TNY+Q+A+V+F+
Sbjct: 85 NVTSTLLRNERCDYWNRDFVPSFQPGQFSLGDIQLYPGVQSYLVQVVATNYNQYALVYFR 144
Query: 631 KVSNNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCID 789
KV +QEYFK TLYGRTK L ELK+ F+RFAKS+GL++D+IIFPV IDQCID
Sbjct: 145 KVYKSQEYFKITLYGRTKELPLELKKEFIRFAKSIGLTEDHIIFPVPIDQCID 197
>ref|XP_862322.1| PREDICTED: similar to Neutrophil gelatinase-associated lipocalin
precursor (NGAL) (P25) (25 kDa
alpha-2-microglobulin-related subunit of MMP-9)
(Lipocalin 2) (Oncogene 24p3) isoform 2 [Canis
familiaris].
Length = 207
Score = 247 bits (630), Expect = 1e-65
Identities = 116/168 (69%), Positives = 141/168 (83%)
Frame = +1
Query: 271 PNWIPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSY 450
P+ IPAPP KVPLQP+FQ DQFQGKWYV+G+AGN +KKE G+ KMYTTTYELK+D SY
Sbjct: 25 PSLIPAPPPLKVPLQPDFQHDQFQGKWYVIGIAGNILKKEGHGQLKMYTTTYELKDDQSY 84
Query: 451 NVVSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFK 630
NV STLLR + CD W R FVPS QPGQF LGDI+ Y G+QSY+V+VV+TNY+Q+A+V+F+
Sbjct: 85 NVTSTLLRNERCDYWNRDFVPSFQPGQFSLGDIQLYPGVQSYLVQVVATNYNQYALVYFR 144
Query: 631 KVSNNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAI 774
KV +QEYFK TLYGRTK L ELK+ F+RFAKS+GL++D+IIFPV I
Sbjct: 145 KVYKSQEYFKITLYGRTKELPLELKKEFIRFAKSIGLTEDHIIFPVPI 192
>ref|XP_548363.2| PREDICTED: similar to lipocalcin 12 [Canis familiaris].
Length = 226
Score = 106 bits (265), Expect = 3e-23
Identities = 50/149 (33%), Positives = 85/149 (57%)
Frame = +1
Query: 319 NFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLCDNWI 498
+F+ DQFQG+W+V+GLAG+ ++ ++ +T T+E E+ V + RG C W
Sbjct: 34 SFKEDQFQGEWFVIGLAGSTHRRSDKFLLNSFTATFERNENSRLQVSYAMTRGHRCITWS 93
Query: 499 RTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTTLYGR 678
+P+ QPG+F + SG V+V T+Y+ FA++ F++ S Q + L R
Sbjct: 94 YVLIPAAQPGRF---SVDGASGANPEEVQVYDTDYNVFALMLFRRQSGGQSILRVNLLCR 150
Query: 679 TKVLSPELKENFVRFAKSLGLSDDNIIFP 765
++ ++ + FV ++LGLSD+NI+FP
Sbjct: 151 MWIIQTQVLDKFVCLVRALGLSDNNIVFP 179
>ref|NP_001003131.1| prostaglandin-H2 D-isomerase [Canis lupus familiaris].
Length = 191
Score = 92.0 bits (227), Expect = 8e-19
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Frame = +1
Query: 298 SKVPLQPNFQADQFQGKWYVVGLAGNAVK-KEEQGRFKMYTTTYELKEDGSYNVVSTLLR 474
++V LQPNFQ D+F G+W+ GLA N+ +E++ M + DG N+ ST LR
Sbjct: 26 AQVSLQPNFQQDKFLGRWFTSGLASNSSWFREKKNVLSMCMSVVAPTADGGLNLTSTFLR 85
Query: 475 GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSN-NQE 651
C+ P+ PG + S ++ V VV+TNY ++A+++ Q+
Sbjct: 86 KDQCETRTLLLRPAGTPGCYSYTSPHWGS---THDVWVVATNYEEYALLYTAGSKGLGQD 142
Query: 652 YFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCID 789
+ TLY RT+ E+KE F FAK+ G ++D I+F D+C++
Sbjct: 143 FHMATLYSRTQTPKAEIKEKFSTFAKTQGFTEDAIVFLPQTDKCME 188
>ref|XP_537790.1| PREDICTED: similar to MSFL2541 [Canis familiaris].
Length = 183
Score = 62.8 bits (151), Expect = 5e-10
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Frame = +1
Query: 298 SKVPLQPNFQADQFQGKWYVVGLAGN---AVKKEEQGRFKMYTTTYELKEDGSYNVVSTL 468
++VP+Q +F A QFQG WYVVG+A + + +++ + M + T D + +
Sbjct: 21 AQVPIQADFDATQFQGTWYVVGVASDDQGFLSSKDELKMSMVSVTASASGDLALKFANPT 80
Query: 469 LRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQ 648
G+ C T GQF +Q +RVV+T+Y +FA+++ + +
Sbjct: 81 PDGR-CQKMDTTLTKGAVDGQF------TNRAMQQADIRVVATDYRRFAVLYLETEAKGT 133
Query: 649 EYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQC 783
L RT L PE + + A +GL+ DQC
Sbjct: 134 RNVWLQLLARTPELIPEGAQKMQQLAPQVGLNPSQGTLLPQSDQC 178
>ref|XP_855342.1| PREDICTED: similar to alpha-2u globulin PGCL4 [Canis familiaris].
Length = 190
Score = 61.6 bits (148), Expect = 1e-09
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 2/161 (1%)
Frame = +1
Query: 319 NFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYN-VVSTLLRGQLCDN 492
NF + G WY + LA + +K EE G +++ E+ + S + T + G+ C
Sbjct: 26 NFDISKISGDWYSILLASDIKEKIEENGSMRVFVKDIEVLSNSSLIFTMHTKVNGK-CTK 84
Query: 493 WIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTTLY 672
+ + G++ + + G + R++ T Y + I V+ QE+ LY
Sbjct: 85 ISLICNKTEKDGEYDV----VHDGYNLF--RIIETAYEDYIIFHLNNVNQEQEFQLMELY 138
Query: 673 GRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
GR +SP++KE FVR+ + + + +NI+ +D+C+ +
Sbjct: 139 GRKPDVSPKVKEKFVRYCQGMEIPKENILDLTQVDRCLQAR 179
>ref|XP_848918.1| PREDICTED: similar to MSFL2541 [Canis familiaris].
Length = 186
Score = 57.0 bits (136), Expect = 3e-08
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 1/163 (0%)
Frame = +1
Query: 298 SKVPLQPNFQADQFQGKWYVVGLAGNA-VKKEEQGRFKMYTTTYELKEDGSYNVVSTLLR 474
++V +QP+F A +F G WYVV + + V ++ M + T G+ +V R
Sbjct: 22 AEVLVQPDFDAKKFSGLWYVVSMVSDCKVFLGKKDHLLMSSRTIRAMPGGNLSVHMEFPR 81
Query: 475 GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEY 654
C ++ G F++ L VRV T+Y FA+++ K
Sbjct: 82 ADGCHQLDAEYLRVGSEGHFRV------PALGYLDVRVADTDYDTFAVLYIYKELEGALS 135
Query: 655 FKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQC 783
LY RT+ SP+ + F F ++GL +D ++ D C
Sbjct: 136 TMVQLYSRTQEASPQATKAFQDFYPTVGLPNDMMVMLPKSDVC 178
>ref|XP_538807.2| PREDICTED: similar to AMBP protein precursor [Canis familiaris].
Length = 415
Score = 56.6 bits (135), Expect = 4e-08
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 3/171 (1%)
Frame = +1
Query: 292 PLSKVPLQPNFQADQFQGKWYVVGLAGNAV-KKEEQGRFKMYTTTY-ELKEDGSYNVVST 465
P + +Q NF + GKW+ V + K+ R M T E D ++ ST
Sbjct: 91 PPDDIQVQENFDVSRIYGKWFHVAVGSTCPWLKKFMDRMSMSTLVLGEGPTDRELSMTST 150
Query: 466 LLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNN 645
R C+ T+ + G+F K ++SYVV TNY ++AI KK S +
Sbjct: 151 RWRRGTCEEISGTYEITGTSGKFLYHKPKWNLTMESYVVH---TNYDEYAIFLTKKFSRH 207
Query: 646 QEYFKTT-LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
T LYGR L L E F A +G+ D I +C+ G+
Sbjct: 208 HGPTITAKLYGRQPQLRESLLEEFREVALGVGIPADAIFTMADKGECVPGE 258
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,606,708
Number of extensions: 1073537
Number of successful extensions: 4423
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4407
Number of HSP's successfully gapped: 8
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013079
(1026 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122373.1| PREDICTED: epididymal-specific lipocalin-12-... 84 2e-16
Alignment gi|NP_999393.1| prostaglandin-H2 D-isomerase [Sus scrofa]. 79 4e-15
Alignment gi|XP_003122388.2| PREDICTED: lipocalin-15-like isoform 1 [Sus ... 65 6e-11
Alignment gi|NP_998979.1| salivary lipocalin precursor [Sus scrofa]. 56 4e-08
Alignment gi|NP_001157478.1| protein AMBP precursor [Sus scrofa]. 55 5e-08
Alignment gi|NP_001090921.1| complement component C8G [Sus scrofa]. 49 3e-06
>ref|XP_003122373.1| PREDICTED: epididymal-specific lipocalin-12-like [Sus scrofa].
Length = 192
Score = 83.6 bits (205), Expect = 2e-16
Identities = 49/161 (30%), Positives = 82/161 (50%)
Frame = +1
Query: 283 PAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVS 462
P LS V LQ FQ DQFQG+W V+ LAG+ K ++ +T T+ ++ + V
Sbjct: 23 PQTALSSV-LQ-TFQKDQFQGEWIVLALAGSTHKTADRSLLSPFTATFVQNQNDRWEVSY 80
Query: 463 TLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSN 642
++R + C W + Q G+F + S VRV T+Y+ FA++ ++ S
Sbjct: 81 AMIRSKRCVTWSYVLISETQVGKFSVVH-SGGSQADQEEVRVYDTDYASFALLLSRRNSG 139
Query: 643 NQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFP 765
+Q + +L R + P++ FV ++ GL+D +I+FP
Sbjct: 140 SQSILRVSLLCRAWAIKPQVLRRFVCLVQAQGLADHHIVFP 180
>ref|NP_999393.1| prostaglandin-H2 D-isomerase [Sus scrofa].
Length = 189
Score = 79.0 bits (193), Expect = 4e-15
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Frame = +1
Query: 298 SKVPLQPNFQADQFQGKWYVVGLAGNAV-KKEEQGRFKMYTTTYELKEDGSYNVVSTLLR 474
++ LQPNFQ D+F G+W+ GLA N+ E++ M + DG +N+ ST LR
Sbjct: 24 AQASLQPNFQEDKFLGRWFTSGLASNSSWFLEKKKVLSMCKSLVAPAPDGGFNLTSTFLR 83
Query: 475 GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEY 654
C P+ PG + S L+ V VV T+Y +A++ + +
Sbjct: 84 KDQCVTRTLMLRPAGPPGCYSYTSPHGGSNLE---VSVVETDYKNYALLHTESGPSPGPA 140
Query: 655 FK-TTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCID 789
F+ TLY R++ ++E F FAK+ G ++D I+F ++C++
Sbjct: 141 FRMATLYSRSQAPGAAVREKFTAFAKARGFTEDGIVFLPRNEKCLE 186
>ref|XP_003122388.2| PREDICTED: lipocalin-15-like isoform 1 [Sus scrofa].
Length = 184
Score = 65.1 bits (157), Expect = 6e-11
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Frame = +1
Query: 298 SKVPLQPNFQADQFQGKWYVVGLAGNA-VKKEEQGRFKMYTTTYELKEDGSYNVVSTLLR 474
++V +QP+F A +F G WYVV + + V + + M+T+ +G+ +V +
Sbjct: 20 AEVLVQPDFDAKKFAGLWYVVAMVSDCKVFRGSKDHLLMFTSNVTATAEGNLSVHMEVPG 79
Query: 475 GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEY 654
C+ ++ + G F++ + VRVV T+YS FA+V+ K
Sbjct: 80 PDGCNQMDAEYLRTGSQGHFRVPTLGYLD------VRVVDTDYSSFAVVYIYKELEGALS 133
Query: 655 FKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDG 792
LY RT+ SP+ + F F ++GL D ++ D C G
Sbjct: 134 TLVQLYSRTQEASPQAMKTFQDFYPTVGLPHDMMVALPKSDACSSG 179
>ref|NP_998979.1| salivary lipocalin precursor [Sus scrofa].
Length = 191
Score = 55.8 bits (133), Expect = 4e-08
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Frame = +1
Query: 319 NFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYNV-VSTLLRGQLCDN 492
NF A + G+WY + LA +A + EE G +++ + ++ S + G+ D
Sbjct: 28 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 87
Query: 493 WIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTTLY 672
+ + G + + Y G + R++ NYS + I+ V+ ++ + Y
Sbjct: 88 Y--AVCDKVGDGVYTVA----YYGENKF--RLLEVNYSDYVILHLVNVNGDKTFQLMEFY 139
Query: 673 GRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQC 783
GR + P+LK+ FV + G+ +NII ID+C
Sbjct: 140 GRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRC 176
>ref|NP_001157478.1| protein AMBP precursor [Sus scrofa].
Length = 352
Score = 55.5 bits (132), Expect = 5e-08
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 280 IPAPPLSKVP----LQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGS 447
+ A P+ +P +Q NF + GKW+ V + G+ ++ + KM T L E +
Sbjct: 17 VSASPVLTLPNDIQVQENFDLSRIYGKWFHVAV-GSTCPWLKRFKDKMTMGTLMLGEGAT 75
Query: 448 ---YNVVSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAI 618
+V T R +C+ + + G+F K ++SYVV TNY ++AI
Sbjct: 76 EREISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVH---TNYDEYAI 132
Query: 619 VFFKKVSNNQEYFKTT-LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
KK S T LYGR L L E F A +G+ +D+I +C+ G+
Sbjct: 133 FLTKKFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECVPGE 192
>ref|NP_001090921.1| complement component C8G [Sus scrofa].
Length = 202
Score = 49.3 bits (116), Expect = 3e-06
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Frame = +1
Query: 292 PLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVSTLL 471
P+S + + +F A QF G W +V +A + +EQG + T+ + G+ VST
Sbjct: 32 PISTIQPKASFDAQQFAGTWLLVAVASSCRFLQEQGH-RAEATSLHVAPQGAAMAVSTFR 90
Query: 472 R-GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYV-VRVVSTNYSQFAIVFFKKVSNN 645
+ +C + F + PG+F L + G + V V V T+Y FAI++ ++
Sbjct: 91 KLDGICWQVRQLFRDTGLPGRFLL----QARGARGAVDVVVGETDYRSFAILYLERA--- 143
Query: 646 QEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIF 762
LY R+ +S F + + L++D+I+F
Sbjct: 144 -RQLSVKLYARSLPVSESALSVFEQRVQGANLTEDHILF 181
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,339,693
Number of extensions: 705042
Number of successful extensions: 2935
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2924
Number of HSP's successfully gapped: 6
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013079
(1026 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032517.1| neutrophil gelatinase-associated lipocalin prec... 232 3e-61
Alignment gi|NP_084234.1| epididymal-specific lipocalin-12 precursor [Mus... 113 3e-25
Alignment gi|NP_032989.2| prostaglandin-H2 D-isomerase [Mus musculus]. 100 1e-21
Alignment gi|NP_031469.1| protein AMBP precursor [Mus musculus]. 66 4e-11
Alignment gi|NP_001186935.1| major urinary protein 17 [Mus musculus]. 54 2e-07
Alignment gi|XP_003084624.1| PREDICTED: major urinary protein 6-like [Mus... 54 2e-07
Alignment gi|XP_001472404.1| PREDICTED: major urinary protein 6-like isof... 53 4e-07
Alignment gi|XP_003085599.1| PREDICTED: major urinary protein 5-like isof... 53 4e-07
Alignment gi|XP_003085598.1| PREDICTED: major urinary protein 5-like isof... 53 4e-07
Alignment gi|XP_003085597.1| PREDICTED: major urinary protein 5-like [Mus... 53 4e-07
>ref|NP_032517.1| neutrophil gelatinase-associated lipocalin precursor [Mus
musculus].
Length = 200
Score = 232 bits (592), Expect = 3e-61
Identities = 114/174 (65%), Positives = 139/174 (79%), Gaps = 2/174 (1%)
Frame = +1
Query: 274 NWIPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYN 453
N IPAP L VPLQP+F++DQF+G+WYVVGLAGNAV+K+ +G F MY+T YEL+E+ SYN
Sbjct: 26 NLIPAPSLLTVPLQPDFRSDQFRGRWYVVGLAGNAVQKKTEGSFTMYSTIYELQENNSYN 85
Query: 454 VVSTLLRGQL--CDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFF 627
V S L+R Q C WIRTFVPS + GQF LG++ +Y +QSY V+V +T+Y+QFA+VFF
Sbjct: 86 VTSILVRDQDQGCRYWIRTFVPSSRAGQFTLGNMHRYPQVQSYNVQVATTDYNQFAMVFF 145
Query: 628 KKVSNNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCID 789
+K S N++YFK TLYGRTK LSPELKE F RFAKSLGL DDNIIF V DQCID
Sbjct: 146 RKTSENKQYFKITLYGRTKELSPELKERFTRFAKSLGLKDDNIIFSVPTDQCID 199
>ref|NP_084234.1| epididymal-specific lipocalin-12 precursor [Mus musculus].
Length = 193
Score = 113 bits (282), Expect = 3e-25
Identities = 54/163 (33%), Positives = 92/163 (56%)
Frame = +1
Query: 307 PLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLC 486
P +FQ+DQFQG+W+V+GLA N ++E + +TT +ELKE + V +++ RG+ C
Sbjct: 29 PQMTSFQSDQFQGEWFVLGLADNTFRREHRALLNFFTTLFELKEKSQFQVTNSMTRGKHC 88
Query: 487 DNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTT 666
+ W T +P+ +PGQF + G ++V+ T+Y FA+V + +++Q + +
Sbjct: 89 NTWSYTLIPATKPGQFTRDNRGSGPGADRENIQVIETDYITFALVLSLRQTSSQNITRVS 148
Query: 667 LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
L GR LS + + F+ ++ L+ DN +FP D D Q
Sbjct: 149 LLGRNWRLSHKTIDKFICLTRTQNLTKDNFLFPDLSDWLPDPQ 191
>ref|NP_032989.2| prostaglandin-H2 D-isomerase [Mus musculus].
Length = 189
Score = 100 bits (250), Expect = 1e-21
Identities = 58/161 (36%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Frame = +1
Query: 310 LQPNFQADQFQGKWYVVGLAGNAVK-KEEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLC 486
+QPNFQ D+F G+WY GLA N+ +E++ M T +G N+ ST LR C
Sbjct: 30 VQPNFQQDKFLGRWYSAGLASNSSWFREKKAVLYMCKTVVAPSTEGGLNLTSTFLRKNQC 89
Query: 487 DNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSN-NQEYFKT 663
+ I P+ PG + +SG + V VV NY ++A++F + Q++
Sbjct: 90 ETKIMVLQPAGAPGHYTYSS--PHSG-SIHSVSVVEANYDEYALLFSRGTKGPGQDFRMA 146
Query: 664 TLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCI 786
TLY RT+ L ELKE F F+K+ GL++++I+F D+CI
Sbjct: 147 TLYSRTQTLKDELKEKFTTFSKAQGLTEEDIVFLPQPDKCI 187
>ref|NP_031469.1| protein AMBP precursor [Mus musculus].
Length = 349
Score = 66.2 bits (160), Expect = 4e-11
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 4/174 (2%)
Frame = +1
Query: 283 PAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGS---YN 453
PA L + +Q NF + GKWY + + G+ + + KM +T L+E + +
Sbjct: 21 PASTLPDIQVQENFSESRIYGKWYNLAV-GSTCPWLSRIKDKMSVSTLVLQEGATETEIS 79
Query: 454 VVSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKK 633
+ ST R +C+ + + G+F K L+SYVV TNY ++AI KK
Sbjct: 80 MTSTRWRRGVCEEITGAYQKTDIDGKFLYHKSKWNITLESYVVH---TNYDEYAIFLTKK 136
Query: 634 VSNNQEYFKTT-LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDG 792
S++ T LYGR L L + F A ++G+S+++IIF +C+ G
Sbjct: 137 SSHHHGLTITAKLYGREPQLRDSLLQEFKDVALNVGISENSIIFMPDRGECVPG 190
>ref|NP_001186935.1| major urinary protein 17 [Mus musculus].
Length = 180
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 319 NFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLCDNW 495
NF ++ G+W+ + LA + +K EE G F+++ + E+ V T+ R + C
Sbjct: 27 NFNVEKINGEWHTIILASDKREKIEEHGNFRLFLEQIHVLENSLVLKVHTV-RDEECSEL 85
Query: 496 IRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTTLYG 675
+ + G++ + Y G ++ + T+Y F + + + + LYG
Sbjct: 86 SMVADKTEKAGEYSV----TYDGFNTFTIP--KTDYDNFLMAHLINEKDGETFQLMGLYG 139
Query: 676 RTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
R LS ++KE F + + G+ +NII ++C+ +
Sbjct: 140 REPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQAR 179
>ref|XP_003084624.1| PREDICTED: major urinary protein 6-like [Mus musculus].
Length = 180
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 319 NFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLCDNW 495
NF ++ G+W+ + LA + +K EE G F+++ + E+ V T+ R + C
Sbjct: 27 NFNVEKINGEWHTIILASDKREKIEEHGNFRLFLEQIHVLENSLVLKVHTV-RDEECSEL 85
Query: 496 IRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTTLYG 675
+ + G++ + Y G ++ + T+Y F + + + + LYG
Sbjct: 86 SMVADKTEKAGEYSV----TYDGFNTFTIP--KTDYDNFLMAHLINEKDGETFQLMGLYG 139
Query: 676 RTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
R LS ++KE F + + G+ +NII ++C+ +
Sbjct: 140 REPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQAR 179
>ref|XP_001472404.1| PREDICTED: major urinary protein 6-like isoform 1 [Mus musculus].
Length = 235
Score = 52.8 bits (125), Expect = 4e-07
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Frame = +1
Query: 319 NFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLCDNW 495
NF ++ G+W+ + LA + +K EE G F+++ + E+ V T+ R + C
Sbjct: 27 NFNVEKINGEWHTIILASDKREKIEEHGNFRLFLEQIHVLENSLVLKVHTV-RDEECSEL 85
Query: 496 IRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTTLYG 675
+ + G++ + Y G ++ + T+Y F + + + + LYG
Sbjct: 86 SMVADKTEKAGEYSV----TYDGFNTFTIP--KTDYDNFLMAHLINEKDGETFQLMGLYG 139
Query: 676 RTKVLSPELKENFVRFAKSLGLSDDNII 759
R LS ++KE F + + G+ +NII
Sbjct: 140 REPDLSSDIKERFAQLCEEHGILRENII 167
>ref|XP_003085599.1| PREDICTED: major urinary protein 5-like isoform 2 [Mus musculus].
Length = 181
Score = 52.8 bits (125), Expect = 4e-07
Identities = 33/163 (20%), Positives = 78/163 (47%), Gaps = 1/163 (0%)
Frame = +1
Query: 310 LQPNFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLC 486
++ NF ++ G+WY + LA + +K EE G +++ + E+ S + ++ + C
Sbjct: 25 MERNFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLEN-SLALKFHIIINEEC 83
Query: 487 DNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTT 666
+ + G++ + Y G ++ + + T+Y + ++ + + +
Sbjct: 84 SEIFLVADKTEKAGEYSV----TYDGSNTFTI--LKTDYDNYIMIHLINKKDGETFQLME 137
Query: 667 LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
LYGR LS ++KE F + ++ G+ +NII ++C++ +
Sbjct: 138 LYGREPDLSSDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|XP_003085598.1| PREDICTED: major urinary protein 5-like isoform 1 [Mus musculus].
Length = 181
Score = 52.8 bits (125), Expect = 4e-07
Identities = 33/163 (20%), Positives = 78/163 (47%), Gaps = 1/163 (0%)
Frame = +1
Query: 310 LQPNFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLC 486
++ NF ++ G+WY + LA + +K EE G +++ + E+ S + ++ + C
Sbjct: 25 MERNFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLEN-SLALKFHIIINEEC 83
Query: 487 DNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTT 666
+ + G++ + Y G ++ + + T+Y + ++ + + +
Sbjct: 84 SEIFLVADKTEKAGEYSV----TYDGSNTFTI--LKTDYDNYIMIHLINKKDGETFQLME 137
Query: 667 LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
LYGR LS ++KE F + ++ G+ +NII ++C++ +
Sbjct: 138 LYGREPDLSSDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|XP_003085597.1| PREDICTED: major urinary protein 5-like [Mus musculus].
Length = 181
Score = 52.8 bits (125), Expect = 4e-07
Identities = 33/163 (20%), Positives = 78/163 (47%), Gaps = 1/163 (0%)
Frame = +1
Query: 310 LQPNFQADQFQGKWYVVGLAGNAVKK-EEQGRFKMYTTTYELKEDGSYNVVSTLLRGQLC 486
++ NF ++ G+WY + LA + +K EE G +++ + E+ S + ++ + C
Sbjct: 25 MERNFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLEN-SLALKFHIIINEEC 83
Query: 487 DNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVSNNQEYFKTT 666
+ + G++ + Y G ++ + + T+Y + ++ + + +
Sbjct: 84 SEIFLVADKTEKAGEYSV----TYDGSNTFTI--LKTDYDNYIMIHLINKKDGETFQLME 137
Query: 667 LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
LYGR LS ++KE F + ++ G+ +NII ++C++ +
Sbjct: 138 LYGREPDLSSDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,310,973
Number of extensions: 856216
Number of successful extensions: 3342
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 3290
Number of HSP's successfully gapped: 46
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013079
(1026 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005555.2| neutrophil gelatinase-associated lipocalin prec... 258 6e-69
Alignment gi|NP_848631.2| epididymal-specific lipocalin-12 precursor [Hom... 127 2e-29
Alignment gi|NP_000945.3| prostaglandin-H2 D-isomerase [Homo sapiens]. 97 2e-20
Alignment gi|NP_976222.1| lipocalin-15 precursor [Homo sapiens]. 68 2e-11
Alignment gi|NP_001624.1| protein AMBP preproprotein [Homo sapiens]. 61 1e-09
Alignment gi|NP_000597.2| complement component C8 gamma chain precursor [... 49 1e-05
>ref|NP_005555.2| neutrophil gelatinase-associated lipocalin precursor [Homo
sapiens].
Length = 198
Score = 258 bits (659), Expect = 6e-69
Identities = 124/171 (72%), Positives = 143/171 (83%)
Frame = +1
Query: 280 IPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVV 459
IPAPPLSKVPLQ NFQ +QFQGKWYVVGLAGNA+ +E++ KMY T YELKED SYNV
Sbjct: 28 IPAPPLSKVPLQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVT 87
Query: 460 STLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVS 639
S L R + CD WIRTFVP QPG+F LG+IK Y GL SY+VRVVSTNY+Q A+VFFKKVS
Sbjct: 88 SVLFRKKKCDYWIRTFVPGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVS 147
Query: 640 NNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDG 792
N+EYFK TLYGRTK L+ ELKENF+RF+KSLGL +++I+FPV IDQCIDG
Sbjct: 148 QNREYFKITLYGRTKELTSELKENFIRFSKSLGLPENHIVFPVPIDQCIDG 198
>ref|NP_848631.2| epididymal-specific lipocalin-12 precursor [Homo sapiens].
Length = 192
Score = 127 bits (318), Expect = 2e-29
Identities = 63/165 (38%), Positives = 100/165 (60%)
Frame = +1
Query: 271 PNWIPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSY 450
P +P PP P+Q +FQ +QFQG+W+V+GLAGN+ + E + +T T+EL +DG +
Sbjct: 22 PTPLPLPP----PMQ-SFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFTATFELSDDGRF 76
Query: 451 NVVSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFK 630
V + + RGQ CD W +P+ QPGQF + D G RVV ++Y+QFA++ +
Sbjct: 77 EVWNAMTRGQHCDTWSYVLIPAAQPGQFTV-DHGVEPGADREETRVVDSDYTQFALMLSR 135
Query: 631 KVSNNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFP 765
+ ++ + +L GR+ +L P + F+ ++ GLSDDNI+FP
Sbjct: 136 RHTSRLAVLRISLLGRSWLLPPGTLDQFICLGRAQGLSDDNIVFP 180
>ref|NP_000945.3| prostaglandin-H2 D-isomerase [Homo sapiens].
Length = 190
Score = 97.1 bits (240), Expect = 2e-20
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Frame = +1
Query: 280 IPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAV-KKEEQGRFKMYTTTYELKEDGSYNV 456
+ A P ++V +QPNFQ D+F G+W+ GLA N+ +E++ M + DG N+
Sbjct: 20 LQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNL 79
Query: 457 VSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQ-----SYVVRVVSTNYSQFAIV 621
ST LR C+ RT + LQP G + YS +Y V VV T+Y Q+A++
Sbjct: 80 TSTFLRKNQCET--RTML--LQPA----GSLGSYSYRSPHWGSTYSVSVVETDYDQYALL 131
Query: 622 FFKKVSNNQEYFK-TTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
+ + E F+ TLY RT+ ELKE F F K+ G ++D I+F D+C+ Q
Sbjct: 132 YSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCMTEQ 190
>ref|NP_976222.1| lipocalin-15 precursor [Homo sapiens].
Length = 184
Score = 67.8 bits (164), Expect = 2e-11
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 1/170 (0%)
Frame = +1
Query: 277 WIPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNA-VKKEEQGRFKMYTTTYELKEDGSYN 453
W P ++V LQP+F A++F G WYVV +A + V ++ M T E+G +
Sbjct: 14 WAPTAQ-AEVLLQPDFNAEKFSGLWYVVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLH 72
Query: 454 VVSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKK 633
V C+ ++ G F++ L VR+V T+YS FA+++ K
Sbjct: 73 VHMEFPGADGCNQVDAEYLKVGSEGHFRV------PALGYLDVRIVDTDYSSFAVLYIYK 126
Query: 634 VSNNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQC 783
LY RT+ +SP+ ++F F +LGL D ++ D C
Sbjct: 127 ELEGALSTMVQLYSRTQDVSPQALKSFQDFYPTLGLPKDMMVMLPQSDAC 176
>ref|NP_001624.1| protein AMBP preproprotein [Homo sapiens].
Length = 352
Score = 61.2 bits (147), Expect = 1e-09
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Frame = +1
Query: 280 IPAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKE---DGSY 450
+P PP + +Q NF + GKWY + + G+ ++ +M +T L E +
Sbjct: 22 VPTPP-DNIQVQENFNISRIYGKWYNLAI-GSTCPWLKKIMDRMTVSTLVLGEGATEAEI 79
Query: 451 NVVSTLLRGQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFK 630
++ ST R +C+ + + G+F K ++SYVV TNY ++AI K
Sbjct: 80 SMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMESYVVH---TNYDEYAIFLTK 136
Query: 631 KVSNNQEYFKTT-LYGRTKVLSPELKENFVRFAKSLGLSDDNIIFPVAIDQCIDGQ 795
K S + T LYGR L L ++F A+ +G+ +D+I +C+ G+
Sbjct: 137 KFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIFTMADRGECVPGE 192
>ref|NP_000597.2| complement component C8 gamma chain precursor [Homo sapiens].
Length = 202
Score = 48.5 bits (114), Expect = 1e-05
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Frame = +1
Query: 283 PAPPLSKVPLQPNFQADQFQGKWYVVGLAGNAVKKEEQGRFKMYTTTYELKEDGSYNVVS 462
PA P+S + + NF A QF G W +V + +EQG + TT + G+ VS
Sbjct: 29 PASPISTIQPKANFDAQQFAGTWLLVAVGSACRFLQEQGH-RAEATTLHVAPQGTAMAVS 87
Query: 463 TLLR-GQLCDNWIRTFVPSLQPGQFKLGDIKKYSGLQSYVVRVVSTNYSQFAIVFFKKVS 639
T + +C + + + G+F L + + V V T+Y FA+++ ++
Sbjct: 88 TFRKLDGICWQVRQLYGDTGVLGRFLL---QARDARGAVHVVVAETDYQSFAVLYLERAG 144
Query: 640 NNQEYFKTTLYGRTKVLSPELKENFVRFAKSLGLSDDNIIF 762
LY R+ +S + F + + L++D I +
Sbjct: 145 Q----LSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIFY 181
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,688,900
Number of extensions: 1042073
Number of successful extensions: 4263
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4249
Number of HSP's successfully gapped: 6
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013079
(1026 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 658 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 658 bits (332), Expect = 0.0
Identities = 335/336 (99%)
Strand = Plus / Plus
Query: 1 tcttgccaagtatttcagcaggagtgctggcaattgcctcacccttcctggatttggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302600679 tcttgccaagtatttcagcaggagtgctggcaattgcctcacccttcctggatttggcaa 302600738
Query: 61 aatatgattcactccaccctggggtgggccactggtcaggtggacggaccataaataggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302600739 aatatgattcactccaccctggggtgggccactggtcaggtggacggaccataaataggg 302600798
Query: 121 tcccccgggcagccttctgactcgcctccccctccttcagcggctgtccggaggaccaga 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 302600799 tcccccgggcagccttctcactcgcctccccctccttcagcggctgtccggaggaccaga 302600858
Query: 181 ctcctcggccctgcaaccatggccctaagtctcctgtggctgggcctcaccctgctgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302600859 ctcctcggccctgcaaccatggccctaagtctcctgtggctgggcctcaccctgctgggg 302600918
Query: 241 gccctgcagacccaggcccagggcaccatccccaactggatcccggcaccccctctgtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302600919 gccctgcagacccaggcccagggcaccatccccaactggatcccggcaccccctctgtcc 302600978
Query: 301 aaggtcccgctgcagcccaacttccaggctgaccag 336
||||||||||||||||||||||||||||||||||||
Sbjct: 302600979 aaggtcccgctgcagcccaacttccaggctgaccag 302601014
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 806 cggcctcctgtctccctcagctcccatcaccttcatgtcttcagcctttgcccatcatgc 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302604998 cggcctcctgtctccctcagctcccatcaccttcatgtcttcagcctttgcccatcatgc 302605057
Query: 866 cacccagctgtcctcaccagcctgggtccccgtggaaggagagggcccagagatgcttct 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302605058 cacccagctgtcctcaccagcctgggtccccgtggaaggagagggcccagagatgcttct 302605117
Query: 926 catggcactgcccaccagctgctccctgggctgccctgctgatggagccccaccctgcct 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302605118 catggcactgcccaccagctgctccctgggctgccctgctgatggagccccaccctgcct 302605177
Query: 986 gctaaataaagatatcccccc 1006
|||||||||||||||||||||
Sbjct: 302605178 gctaaataaagatatcccccc 302605198
Score = 272 bits (137), Expect = 4e-70
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 334 cagttccaggggaagtggtacgtcgtaggcctggcggggaacgcagttaagaaggaagag 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302601542 cagttccaggggaagtggtacgtcgtaggcctggcggggaacgcagttaagaaggaagag 302601601
Query: 394 caaggccggtttaagatgtacaccaccacctacgagctcaaagaagacggcagctacaac 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302601602 caaggccggtttaagatgtacaccaccacctacgagctcaaagaagacggcagctacaac 302601661
Query: 454 gtcgtctccaccctgctcagg 474
||| |||||||||||||||||
Sbjct: 302601662 gtcatctccaccctgctcagg 302601682
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 554 aatactctggattgcagagctatgtcgtgcgtgtggtgtctactaactatagccagttcg 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302603689 aatactctggattgcagagctatgtcgtgcgtgtggtgtctactaactatagccagttcg 302603748
Query: 614 ccatagtattcttcaagaaggtttccaacaaccaagagtacttcaaaaccacgctttacg 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302603749 ccatagtattcttcaagaaggtttccaacaaccaagagtacttcaaaaccacgctttacg 302603808
Query: 674 g 674
|
Sbjct: 302603809 g 302603809
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 673 gggaggaccaaggtgctgtcccctgagctgaaggagaactttgtccgctttgccaagtct 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302604032 gggaggaccaaggtgctgtcccctgagctgaaggagaactttgtccgctttgccaagtct 302604091
Query: 733 ctgggcctcagcgatgacaacatcatcttccccgtcgcaatcg 775
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302604092 ctgggcctcagcgatgacaacatcatcttccccgtcgcaatcg 302604134
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 471 caggggccagctctgtgacaactggatcagaacttttgtcccaagtctccagccgggcca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302602799 caggggccagctctgtgacaactggatcagaacttttgtcccaagtctccagccgggcca 302602858
Query: 531 gttcaaactgggtgatattaaga 553
|||||||||||||||||||||||
Sbjct: 302602859 gttcaaactgggtgatattaaga 302602881
Score = 61.9 bits (31), Expect = 6e-07
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 775 gaccagtgcatcgacggccagtgagcatgca 805
|||||||||||||||||||||||||||||||
Sbjct: 302604853 gaccagtgcatcgacggccagtgagcatgca 302604883
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,549,269
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 7
Length of query: 1026
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1005
Effective length of database: 2,808,413,156
Effective search space: 2822455221780
Effective search space used: 2822455221780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)