Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013084
(978 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178966.1| glyoxylate reductase/hydroxypyruvate reducta... 565 e-161
Alignment gi|XP_002689764.1| PREDICTED: glyoxylate reductase/hydroxypyruv... 565 e-161
Alignment gi|XP_002693961.1| PREDICTED: glyoxylate reductase/hydroxypyruv... 505 e-143
Alignment gi|NP_001069187.2| hypothetical protein LOC515578 [Bos taurus]. 164 8e-41
Alignment gi|NP_001030189.1| D-3-phosphoglycerate dehydrogenase [Bos taur... 134 9e-32
Alignment gi|XP_002688496.1| PREDICTED: C-terminal binding protein 1 [Bos... 80 4e-15
Alignment gi|XP_590771.5| PREDICTED: C-terminal binding protein 1 [Bos ta... 80 4e-15
Alignment gi|NP_783643.1| C-terminal-binding protein 2 [Bos taurus]. 78 1e-14
>ref|NP_001178966.1| glyoxylate reductase/hydroxypyruvate reductase [Bos taurus].
Length = 328
Score = 565 bits (1455), Expect = e-161
Identities = 282/310 (90%), Positives = 295/310 (95%)
Frame = +3
Query: 48 MRRVRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLS 227
MR VRLMKVF+TRRIPPEGSA LARAADCEVEQWDSDEPIP EDLE+ +AGA GLLCLLS
Sbjct: 1 MRPVRLMKVFITRRIPPEGSAALARAADCEVEQWDSDEPIPREDLEQRMAGAQGLLCLLS 60
Query: 228 DRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL 407
DRIDKKLLD AGANLKVISTMSVGVDHLALDEIKKRGIRVGYTP VLTD TAELAVSLLL
Sbjct: 61 DRIDKKLLDAAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLL 120
Query: 408 TTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRF 587
TTCRRLPEAIEEVKNGGWTSWKPLWMCG+GL++STVGIVGLGRIGQAIARRLKPFGVRRF
Sbjct: 121 TTCRRLPEAIEEVKNGGWTSWKPLWMCGHGLSQSTVGIVGLGRIGQAIARRLKPFGVRRF 180
Query: 588 LYTGSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVF 767
LYTG QPRPQEAAEFQAEFV +LAAESDFI+VACSLTPATRGLC+KDF+Q MKKTAVF
Sbjct: 181 LYTGRQPRPQEAAEFQAEFVSTPKLAAESDFIVVACSLTPATRGLCNKDFFQWMKKTAVF 240
Query: 768 INISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYR 947
+NISRGEVV+QDDLYQAL SGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSAT+R
Sbjct: 241 VNISRGEVVDQDDLYQALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATHR 300
Query: 948 TRNTMSVLAA 977
TRN MSVLAA
Sbjct: 301 TRNIMSVLAA 310
>ref|XP_002689764.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Bos
taurus].
Length = 328
Score = 565 bits (1455), Expect = e-161
Identities = 282/310 (90%), Positives = 295/310 (95%)
Frame = +3
Query: 48 MRRVRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLS 227
MR VRLMKVF+TRRIPPEGSA LARAADCEVEQWDSDEPIP EDLE+ +AGA GLLCLLS
Sbjct: 1 MRPVRLMKVFITRRIPPEGSAALARAADCEVEQWDSDEPIPREDLEQRMAGAQGLLCLLS 60
Query: 228 DRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL 407
DRIDKKLLD AGANLKVISTMSVGVDHLALDEIKKRGIRVGYTP VLTD TAELAVSLLL
Sbjct: 61 DRIDKKLLDAAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLL 120
Query: 408 TTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRF 587
TTCRRLPEAIEEVKNGGWTSWKPLWMCG+GL++STVGIVGLGRIGQAIARRLKPFGVRRF
Sbjct: 121 TTCRRLPEAIEEVKNGGWTSWKPLWMCGHGLSQSTVGIVGLGRIGQAIARRLKPFGVRRF 180
Query: 588 LYTGSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVF 767
LYTG QPRPQEAAEFQAEFV +LAAESDFI+VACSLTPATRGLC+KDF+Q MKKTAVF
Sbjct: 181 LYTGRQPRPQEAAEFQAEFVSTPKLAAESDFIVVACSLTPATRGLCNKDFFQWMKKTAVF 240
Query: 768 INISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYR 947
+NISRGEVV+QDDLYQAL SGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSAT+R
Sbjct: 241 VNISRGEVVDQDDLYQALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATHR 300
Query: 948 TRNTMSVLAA 977
TRN MSVLAA
Sbjct: 301 TRNIMSVLAA 310
>ref|XP_002693961.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Bos
taurus].
Length = 398
Score = 505 bits (1301), Expect = e-143
Identities = 252/279 (90%), Positives = 264/279 (94%)
Frame = +3
Query: 141 EQWDSDEPIPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALD 320
EQWDSDEPIP EDLE+ +AGA GLLCLLSDRIDKKLLD AGANLKVISTMSVGVDHLALD
Sbjct: 102 EQWDSDEPIPREDLEQRMAGAQGLLCLLSDRIDKKLLDAAGANLKVISTMSVGVDHLALD 161
Query: 321 EIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGL 500
EIKKRGIRVGYTP VLTD TAELAVSLLLT CRRLPEAIEEVKNGGWTSWKPLWMCG+GL
Sbjct: 162 EIKKRGIRVGYTPGVLTDATAELAVSLLLTICRRLPEAIEEVKNGGWTSWKPLWMCGHGL 221
Query: 501 TESTVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQEAAEFQAEFVPVLQLAAESDF 680
++STVGIVGLGRIGQAIARRLKPFGVRRFLYTG QPR QEAAEFQAEFV +LAAESDF
Sbjct: 222 SQSTVGIVGLGRIGQAIARRLKPFGVRRFLYTGRQPRSQEAAEFQAEFVSTPELAAESDF 281
Query: 681 IIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVT 860
I+VACSLTPATRGLC+KDF+Q MKKTAVF+NISRGEVV+QDDLYQAL SGQIAAAGLDVT
Sbjct: 282 IVVACSLTPATRGLCNKDFFQWMKKTAVFVNISRGEVVDQDDLYQALASGQIAAAGLDVT 341
Query: 861 TPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLAA 977
TPEPLPTNHPLLTLKNCVILPHIGSAT+RTRN MSVLAA
Sbjct: 342 TPEPLPTNHPLLTLKNCVILPHIGSATHRTRNIMSVLAA 380
>ref|NP_001069187.2| hypothetical protein LOC515578 [Bos taurus].
Length = 328
Score = 164 bits (416), Expect = 8e-41
Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 1/233 (0%)
Frame = +3
Query: 267 NLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 446
+LK++++ G+DHL L + G++V TP ++ TA+L ++LLL RR+ E ++
Sbjct: 73 SLKIVASAGAGLDHLDLGLVASFGVKVANTPHAVSSPTADLGMALLLAAARRVVEG-HQL 131
Query: 447 KNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQEAA 626
T P G +T +T+GI+G+G IG IA+R + F ++ + + + +E
Sbjct: 132 AVSPHTENFPTDYMGQQVTGATLGIIGMGSIGYKIAQRARAFEMKIVYHNRKRRKLEEEE 191
Query: 627 EFQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQD 803
A + L L SDF+++A SLTP T+GL K + MK TA+ INI RG +V+Q+
Sbjct: 192 AVGAIYCERLDDLLQWSDFVMLAVSLTPQTQGLIGKRELRLMKPTAILINIGRGLLVDQE 251
Query: 804 DLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTM 962
L +AL +G I AA LDVT PEPLP +HPLL LKN ++ PHIGSAT++ R M
Sbjct: 252 ALVEALQTGLIKAAALDVTYPEPLPRDHPLLELKNVILTPHIGSATHQARRQM 304
>ref|NP_001030189.1| D-3-phosphoglycerate dehydrogenase [Bos taurus].
Length = 533
Score = 134 bits (338), Expect = 9e-32
Identities = 83/261 (31%), Positives = 142/261 (54%), Gaps = 2/261 (0%)
Frame = +3
Query: 165 IPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIR 344
+ E+L + GL+ + ++ +++ A L+V+ GVD++ L+ ++GI
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTSDIINAA-EKLQVVGRAGTGVDNVDLEAATRKGIL 94
Query: 345 VGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIV 524
V TP+ + + AEL +++ R++P+A +K+G W K G L +GI+
Sbjct: 95 VMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKK---FMGTELNGKVLGIL 151
Query: 525 GLGRIGQAIARRLKPFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACS 698
GLGRIG+ +A R++ FG++ G P P+ +A F + +P+ Q+ DFI V
Sbjct: 152 GLGRIGREVATRMQSFGMKTI---GYDPIISPEVSASFGVQQLPLEQIWPLCDFITVHTP 208
Query: 699 LTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLP 878
L P+T GL + + + KK +N +RG +V++ L +AL SGQ A A LDV T EP P
Sbjct: 209 LLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-P 267
Query: 879 TNHPLLTLKNCVILPHIGSAT 941
+ L+ +N + PH+G++T
Sbjct: 268 RDRALVNHENVISCPHLGAST 288
>ref|XP_002688496.1| PREDICTED: C-terminal binding protein 1 [Bos taurus].
Length = 560
Score = 79.7 bits (195), Expect = 4e-15
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 81 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTMCHILNLYRRTTWLHQALR 140
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++GLGR+GQA+A R K FG Y
Sbjct: 141 EGTRVQSVEQIREVASGAARIRGETLGVIGLGRVGQAVALRAKAFGFNVLFYDPYLADGT 200
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 201 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 260
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 261 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 304
>ref|XP_590771.5| PREDICTED: C-terminal binding protein 1 [Bos taurus].
Length = 476
Score = 79.7 bits (195), Expect = 4e-15
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 81 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTMCHILNLYRRTTWLHQALR 140
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++GLGR+GQA+A R K FG Y
Sbjct: 141 EGTRVQSVEQIREVASGAARIRGETLGVIGLGRVGQAVALRAKAFGFNVLFYDPYLADGT 200
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 201 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 260
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 261 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 304
>ref|NP_783643.1| C-terminal-binding protein 2 [Bos taurus].
Length = 982
Score = 78.2 bits (191), Expect = 1e-14
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L+VI + G D++ + + GI V P + TA+ + +L RR + ++
Sbjct: 635 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 694
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++G GR GQA+A R K FG Y P Q
Sbjct: 695 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVLFY---DPYLQ 751
Query: 618 EAAE--FQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGE 788
+ E + V LQ L +SD + + C+L L + ++M++ A +N +RG
Sbjct: 752 DGTERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGG 811
Query: 789 VVNQDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+V++ L QAL G+I A LDV EP PL N + PH
Sbjct: 812 LVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 858
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,781,336
Number of extensions: 1403462
Number of successful extensions: 5940
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5907
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013084
(978 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854862.1| PREDICTED: similar to Glyoxylate reductase/hydr... 562 e-160
Alignment gi|XP_850035.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 129 5e-30
Alignment gi|XP_849919.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 129 5e-30
Alignment gi|XP_849835.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 129 5e-30
Alignment gi|XP_849042.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 114 1e-25
Alignment gi|XP_855070.1| PREDICTED: similar to C-terminal binding protei... 80 3e-15
>ref|XP_854862.1| PREDICTED: similar to Glyoxylate reductase/hydroxypyruvate
reductase [Canis familiaris].
Length = 352
Score = 562 bits (1448), Expect = e-160
Identities = 275/307 (89%), Positives = 295/307 (96%)
Frame = +3
Query: 57 VRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLSDRI 236
VRLMKVFVTRRIPPEG A LARAADCEVEQWDSDEPIP+++LERGVAGAHGLLCLLSD +
Sbjct: 28 VRLMKVFVTRRIPPEGRAALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 87
Query: 237 DKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 416
DK+LLD AGANLKVISTMSVGVDHLAL+EIKKRGIRVGYTPDVLTD TAELA+SLLLTTC
Sbjct: 88 DKRLLDAAGANLKVISTMSVGVDHLALEEIKKRGIRVGYTPDVLTDATAELAMSLLLTTC 147
Query: 417 RRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLYT 596
RRLPEAIEEV+NGGWTSWKPLWMCGYGLT+STVGI+GLGRIGQAIARRLKPFG++RFLYT
Sbjct: 148 RRLPEAIEEVRNGGWTSWKPLWMCGYGLTQSTVGIIGLGRIGQAIARRLKPFGIQRFLYT 207
Query: 597 GSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINI 776
G QPRPQEAAEFQAEFV +LAAESDFIIVACSLTPAT+GLC+KDF+Q+MK TAVFINI
Sbjct: 208 GRQPRPQEAAEFQAEFVSTPKLAAESDFIIVACSLTPATKGLCNKDFFQQMKTTAVFINI 267
Query: 777 SRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRN 956
SRG+VVNQDDLY+AL SGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATY TRN
Sbjct: 268 SRGDVVNQDDLYEALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYGTRN 327
Query: 957 TMSVLAA 977
TMS+LAA
Sbjct: 328 TMSLLAA 334
>ref|XP_850035.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 533
Score = 129 bits (323), Expect = 5e-30
Identities = 81/261 (31%), Positives = 140/261 (53%), Gaps = 2/261 (0%)
Frame = +3
Query: 165 IPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIR 344
+ E+L + GL+ + ++ +++ A L+V+ GVD++ L+ ++GI
Sbjct: 36 LSKEELMAELRDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGIL 94
Query: 345 VGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIV 524
V TP+ + + AEL +++ R +P+A +K+G W K G L +GI+
Sbjct: 95 VMNTPNGNSLSAAELTCGMIMCLARHIPQATASMKDGKWERKK---FMGTELNGKILGIL 151
Query: 525 GLGRIGQAIARRLKPFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACS 698
GLGRIG+ +A R++ FG++ G P P+ +A F + +P+ ++ DFI V
Sbjct: 152 GLGRIGREVATRMQSFGMKT---VGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTP 208
Query: 699 LTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLP 878
L P+T GL + + + KK +N +RG +V++ L +AL SGQ A A LDV T EP P
Sbjct: 209 LLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALRSGQCAGAALDVFTEEP-P 267
Query: 879 TNHPLLTLKNCVILPHIGSAT 941
+ L+ + + PH+G++T
Sbjct: 268 RDRALVEHERVISCPHLGAST 288
>ref|XP_849919.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 533
Score = 129 bits (323), Expect = 5e-30
Identities = 81/261 (31%), Positives = 140/261 (53%), Gaps = 2/261 (0%)
Frame = +3
Query: 165 IPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIR 344
+ E+L + GL+ + ++ +++ A L+V+ GVD++ L+ ++GI
Sbjct: 36 LSKEELMAELRDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGIL 94
Query: 345 VGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIV 524
V TP+ + + AEL +++ R +P+A +K+G W K G L +GI+
Sbjct: 95 VMNTPNGNSLSAAELTCGMIMCLARHIPQATASMKDGKWERKK---FMGTELNGKILGIL 151
Query: 525 GLGRIGQAIARRLKPFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACS 698
GLGRIG+ +A R++ FG++ G P P+ +A F + +P+ ++ DFI V
Sbjct: 152 GLGRIGREVATRMQSFGMKT---VGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTP 208
Query: 699 LTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLP 878
L P+T GL + + + KK +N +RG +V++ L +AL SGQ A A LDV T EP P
Sbjct: 209 LLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALRSGQCAGAALDVFTEEP-P 267
Query: 879 TNHPLLTLKNCVILPHIGSAT 941
+ L+ + + PH+G++T
Sbjct: 268 RDRALVEHERVISCPHLGAST 288
>ref|XP_849835.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 533
Score = 129 bits (323), Expect = 5e-30
Identities = 81/261 (31%), Positives = 140/261 (53%), Gaps = 2/261 (0%)
Frame = +3
Query: 165 IPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIR 344
+ E+L + GL+ + ++ +++ A L+V+ GVD++ L+ ++GI
Sbjct: 36 LSKEELMAELRDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGIL 94
Query: 345 VGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIV 524
V TP+ + + AEL +++ R +P+A +K+G W K G L +GI+
Sbjct: 95 VMNTPNGNSLSAAELTCGMIMCLARHIPQATASMKDGKWERKK---FMGTELNGKILGIL 151
Query: 525 GLGRIGQAIARRLKPFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACS 698
GLGRIG+ +A R++ FG++ G P P+ +A F + +P+ ++ DFI V
Sbjct: 152 GLGRIGREVATRMQSFGMKT---VGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTP 208
Query: 699 LTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLP 878
L P+T GL + + + KK +N +RG +V++ L +AL SGQ A A LDV T EP P
Sbjct: 209 LLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALRSGQCAGAALDVFTEEP-P 267
Query: 879 TNHPLLTLKNCVILPHIGSAT 941
+ L+ + + PH+G++T
Sbjct: 268 RDRALVEHERVISCPHLGAST 288
>ref|XP_849042.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 411
Score = 114 bits (285), Expect = 1e-25
Identities = 73/247 (29%), Positives = 132/247 (53%), Gaps = 2/247 (0%)
Frame = +3
Query: 207 GLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAE 386
GL+ + ++ +++ A L+V+ GVD++ L+ ++GI V TP+ + + AE
Sbjct: 31 GLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 89
Query: 387 LAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLK 566
L +++ R +P+A +K+G W K G L +GI+GLGRIG+ +A R++
Sbjct: 90 LTCGMIMCLARHIPQATASMKDGKWERKK---FMGTELNGKILGILGLGRIGREVATRMQ 146
Query: 567 PFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFY 740
FG++ G P P+ +A F + +P+ ++ DFI V L P+T GL + +
Sbjct: 147 SFGMKT---VGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTF 203
Query: 741 QRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVIL 920
+ KK +N +RG +V++ L +AL SG A + ++ EP P + L+ + +
Sbjct: 204 AQCKKGVRVVNCARGGIVDEGALLRALRSGLSGGAEMCLSWQEP-PRDRALVEHERVISC 262
Query: 921 PHIGSAT 941
PH+G++T
Sbjct: 263 PHLGAST 269
>ref|XP_855070.1| PREDICTED: similar to C-terminal binding protein 1 (CtBP1)
(C-terminal binding protein 3) (CtBP3) (50 kDa
BFA-dependent ADP-ribosylation substrate) (BARS-50)
[Canis familiaris].
Length = 369
Score = 80.1 bits (196), Expect = 3e-15
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 81 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTMCHILNLYRRTTWLHQALR 140
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+GI+GLGR+GQA+A R K FG Y
Sbjct: 141 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGT 200
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 201 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 260
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 261 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 304
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,600,432
Number of extensions: 1448507
Number of successful extensions: 6032
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6003
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013084
(978 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925894.3| PREDICTED: hypothetical protein LOC100154014... 212 3e-55
Alignment gi|XP_003353628.1| PREDICTED: hypothetical protein LOC100624166... 210 8e-55
Alignment gi|XP_001924750.3| PREDICTED: probable 2-ketogluconate reductas... 165 4e-41
Alignment gi|XP_003353764.1| PREDICTED: probable 2-ketogluconate reductas... 165 4e-41
Alignment gi|NP_001116634.1| D-3-phosphoglycerate dehydrogenase [Sus scro... 129 2e-30
Alignment gi|XP_001929103.1| PREDICTED: hypothetical protein LOC100154421... 78 8e-15
>ref|XP_001925894.3| PREDICTED: hypothetical protein LOC100154014 [Sus scrofa].
Length = 272
Score = 212 bits (539), Expect = 3e-55
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +3
Query: 660 LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIA 839
LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIA
Sbjct: 149 LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIA 208
Query: 840 AAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLAA 977
AAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLAA
Sbjct: 209 AAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLAA 254
>ref|XP_003353628.1| PREDICTED: hypothetical protein LOC100624166 [Sus scrofa].
Length = 312
Score = 210 bits (535), Expect = 8e-55
Identities = 108/120 (90%), Positives = 110/120 (91%), Gaps = 9/120 (7%)
Frame = +3
Query: 3 AVRGIWAQNPAAPGCMRRVRLMKVFVTRRIPPEGSATLARAAD---------CEVEQWDS 155
A+RGIWAQN AAPGCMRRVRLMKVFVTRRIPPEGSATLARAA+ CEVEQWDS
Sbjct: 135 ALRGIWAQNRAAPGCMRRVRLMKVFVTRRIPPEGSATLARAAEHGSLTGCFSCEVEQWDS 194
Query: 156 DEPIPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKR 335
DEPIPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKR
Sbjct: 195 DEPIPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKR 254
>ref|XP_001924750.3| PREDICTED: probable 2-ketogluconate reductase-like isoform 1 [Sus
scrofa].
Length = 346
Score = 165 bits (417), Expect = 4e-41
Identities = 96/244 (39%), Positives = 148/244 (60%), Gaps = 1/244 (0%)
Frame = +3
Query: 234 IDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 413
I+++LL + +L+VI++ VG+DHL L I G++V TP + + TA+L ++LLL
Sbjct: 81 INQELLQSL-PSLRVIASSGVGLDHLDLKLIDSFGVKVANTPHAVANPTADLGMALLLAV 139
Query: 414 CRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLY 593
RR+ E + + ++ W+ G +T +T+GI+G+G IG IA+R + F ++ +
Sbjct: 140 ARRVVEGHQLAISPHTENFSANWL-GEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYH 198
Query: 594 TGSQPRPQEAAEFQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFI 770
+ +E A + L L +SDF+++A +LTP ++GL + MK TA I
Sbjct: 199 NRKRRSLEEEEAVGATYCERLDDLLQQSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLI 258
Query: 771 NISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRT 950
N+ RG +V+QD L +AL +G I AA LDVT PEPLP +HPLL LKN + PHIGSAT++
Sbjct: 259 NVGRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIGSATHQA 318
Query: 951 RNTM 962
R M
Sbjct: 319 RRQM 322
>ref|XP_003353764.1| PREDICTED: probable 2-ketogluconate reductase-like isoform 2 [Sus
scrofa].
Length = 328
Score = 165 bits (417), Expect = 4e-41
Identities = 96/244 (39%), Positives = 148/244 (60%), Gaps = 1/244 (0%)
Frame = +3
Query: 234 IDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 413
I+++LL + +L+VI++ VG+DHL L I G++V TP + + TA+L ++LLL
Sbjct: 63 INQELLQSL-PSLRVIASSGVGLDHLDLKLIDSFGVKVANTPHAVANPTADLGMALLLAV 121
Query: 414 CRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLY 593
RR+ E + + ++ W+ G +T +T+GI+G+G IG IA+R + F ++ +
Sbjct: 122 ARRVVEGHQLAISPHTENFSANWL-GEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYH 180
Query: 594 TGSQPRPQEAAEFQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFI 770
+ +E A + L L +SDF+++A +LTP ++GL + MK TA I
Sbjct: 181 NRKRRSLEEEEAVGATYCERLDDLLQQSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLI 240
Query: 771 NISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRT 950
N+ RG +V+QD L +AL +G I AA LDVT PEPLP +HPLL LKN + PHIGSAT++
Sbjct: 241 NVGRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIGSATHQA 300
Query: 951 RNTM 962
R M
Sbjct: 301 RRQM 304
>ref|NP_001116634.1| D-3-phosphoglycerate dehydrogenase [Sus scrofa].
Length = 533
Score = 129 bits (324), Expect = 2e-30
Identities = 82/261 (31%), Positives = 140/261 (53%), Gaps = 2/261 (0%)
Frame = +3
Query: 165 IPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIR 344
+ E+L + GL+ + ++ +++ A L+V+ GVD++ L+ ++GI
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTSDVINAA-KKLQVVGRAGTGVDNVDLEAATRKGIL 94
Query: 345 VGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIV 524
V TP+ + + AEL ++L R++P+A +K+G W K G L +GI+
Sbjct: 95 VMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKK---FMGTELNGKVLGIL 151
Query: 525 GLGRIGQAIARRLKPFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACS 698
GLGRIG+ +A R++ FG++ G P P+ +A F + +P+ ++ DFI V
Sbjct: 152 GLGRIGREVATRMQSFGMKTI---GYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTP 208
Query: 699 LTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLP 878
L P+T GL + + KK +N +RG +V++ L +AL SGQ A A LDV T EP P
Sbjct: 209 LLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-P 267
Query: 879 TNHPLLTLKNCVILPHIGSAT 941
+ L+ + + PH+G++T
Sbjct: 268 RDRALVDHEKVISCPHLGAST 288
>ref|XP_001929103.1| PREDICTED: hypothetical protein LOC100154421 [Sus scrofa].
Length = 982
Score = 77.8 bits (190), Expect = 8e-15
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L+VI + G D++ + + GI V P + TA+ + +L RR + ++
Sbjct: 635 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 694
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++G GR GQA+A R K FG Y P Q
Sbjct: 695 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY---DPYLQ 751
Query: 618 EAAE--FQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGE 788
+ E + V LQ L +SD + + C+L L + ++M++ A +N +RG
Sbjct: 752 DGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGG 811
Query: 789 VVNQDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+V++ L QAL G+I A LDV EP PL N + PH
Sbjct: 812 LVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 858
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,641,131
Number of extensions: 908643
Number of successful extensions: 3983
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3957
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013084
(978 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_525028.1| glyoxylate reductase/hydroxypyruvate reductase ... 541 e-154
Alignment gi|NP_058662.2| D-3-phosphoglycerate dehydrogenase [Mus musculu... 134 8e-32
Alignment gi|NP_001185790.1| C-terminal-binding protein 1 isoform 4 [Mus ... 79 4e-15
Alignment gi|NP_001185789.1| C-terminal-binding protein 1 isoform 2 [Mus ... 79 4e-15
Alignment gi|NP_001185788.1| C-terminal-binding protein 1 isoform 1 [Mus ... 79 4e-15
Alignment gi|NP_038530.1| C-terminal-binding protein 1 isoform 3 [Mus mus... 79 4e-15
Alignment gi|NP_001164215.1| C-terminal-binding protein 2 isoform 1 [Mus ... 78 9e-15
Alignment gi|NP_034110.1| C-terminal-binding protein 2 isoform 2 [Mus mus... 78 9e-15
>ref|NP_525028.1| glyoxylate reductase/hydroxypyruvate reductase [Mus musculus].
Length = 328
Score = 541 bits (1395), Expect = e-154
Identities = 264/310 (85%), Positives = 289/310 (93%)
Frame = +3
Query: 48 MRRVRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLS 227
M+ RLMKVFVT +P EG A LA+AADCEVEQW+SD+PIP +DLE+GV GAHGLLC LS
Sbjct: 1 MKPARLMKVFVTGPLPAEGRAALAQAADCEVEQWNSDDPIPRKDLEQGVVGAHGLLCRLS 60
Query: 228 DRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL 407
DR+DKKLLD AGANL+VIST+SVGVDHLALDEIKKRGIRVGYTP VLTD TAELAVSLLL
Sbjct: 61 DRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLL 120
Query: 408 TTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRF 587
TTCRRLPEAIEEVKNGGW+SW PLWMCGYGL++STVGIVGLGRIGQAIARRLKPFGV+RF
Sbjct: 121 TTCRRLPEAIEEVKNGGWSSWSPLWMCGYGLSQSTVGIVGLGRIGQAIARRLKPFGVQRF 180
Query: 588 LYTGSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVF 767
LYTG QPRPQEAAEFQAEFVP+ QLAAESDFI+V+CSLTP T GLCSKDF+Q+MK TA+F
Sbjct: 181 LYTGRQPRPQEAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIF 240
Query: 768 INISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYR 947
INISRG+VVNQ+DLYQAL SGQIAAAGLDVTTPEPLP +HPLLTLKNCVILPHIGSATY+
Sbjct: 241 INISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYK 300
Query: 948 TRNTMSVLAA 977
TRNTMS+LAA
Sbjct: 301 TRNTMSLLAA 310
>ref|NP_058662.2| D-3-phosphoglycerate dehydrogenase [Mus musculus].
Length = 533
Score = 134 bits (338), Expect = 8e-32
Identities = 84/261 (32%), Positives = 143/261 (54%), Gaps = 2/261 (0%)
Frame = +3
Query: 165 IPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIR 344
+ E+L + GL+ + ++ +++ A L+V+ GVD++ L+ ++GI
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGIL 94
Query: 345 VGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIV 524
V TP+ + + AEL +++ R++P+A +K+G W K G L T+GI+
Sbjct: 95 VMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKK---FMGTELNGKTLGIL 151
Query: 525 GLGRIGQAIARRLKPFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACS 698
GLGRIG+ +A R++ FG++ G P P+ AA F + +P+ ++ DFI V
Sbjct: 152 GLGRIGREVATRMQSFGMKT---VGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTP 208
Query: 699 LTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLP 878
L P+T GL + + + KK +N +RG +V++ L +AL SGQ A A LDV T EP P
Sbjct: 209 LLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-P 267
Query: 879 TNHPLLTLKNCVILPHIGSAT 941
+ L+ +N + PH+G++T
Sbjct: 268 RDRALVDHENVISCPHLGAST 288
>ref|NP_001185790.1| C-terminal-binding protein 1 isoform 4 [Mus musculus].
Length = 430
Score = 79.3 bits (194), Expect = 4e-15
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 81 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 140
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+GI+GLGR+GQA+A R K FG Y
Sbjct: 141 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 200
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 201 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 260
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 261 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 304
>ref|NP_001185789.1| C-terminal-binding protein 1 isoform 2 [Mus musculus].
Length = 429
Score = 79.3 bits (194), Expect = 4e-15
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 81 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 140
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+GI+GLGR+GQA+A R K FG Y
Sbjct: 141 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 200
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 201 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 260
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 261 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 304
>ref|NP_001185788.1| C-terminal-binding protein 1 isoform 1 [Mus musculus].
Length = 440
Score = 79.3 bits (194), Expect = 4e-15
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 92 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 151
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+GI+GLGR+GQA+A R K FG Y
Sbjct: 152 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 211
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 212 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 271
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 272 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 315
>ref|NP_038530.1| C-terminal-binding protein 1 isoform 3 [Mus musculus].
Length = 441
Score = 79.3 bits (194), Expect = 4e-15
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 92 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 151
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+GI+GLGR+GQA+A R K FG Y
Sbjct: 152 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 211
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 212 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 271
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 272 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 315
>ref|NP_001164215.1| C-terminal-binding protein 2 isoform 1 [Mus musculus].
Length = 988
Score = 78.2 bits (191), Expect = 9e-15
Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L+VI + G D++ + + GI V P + TA+ V +L RR + ++
Sbjct: 641 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALR 700
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++G GR GQA+A R K FG Y P Q
Sbjct: 701 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY---DPYLQ 757
Query: 618 EAAE--FQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGE 788
+ E + V LQ L +SD + + C+L L + ++M++ A +N +RG
Sbjct: 758 DGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGG 817
Query: 789 VVNQDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+V++ L QAL G+I A LDV EP PL N + PH
Sbjct: 818 LVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 864
>ref|NP_034110.1| C-terminal-binding protein 2 isoform 2 [Mus musculus].
Length = 445
Score = 78.2 bits (191), Expect = 9e-15
Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L+VI + G D++ + + GI V P + TA+ V +L RR + ++
Sbjct: 98 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALR 157
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++G GR GQA+A R K FG Y P Q
Sbjct: 158 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY---DPYLQ 214
Query: 618 EAAE--FQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGE 788
+ E + V LQ L +SD + + C+L L + ++M++ A +N +RG
Sbjct: 215 DGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGG 274
Query: 789 VVNQDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+V++ L QAL G+I A LDV EP PL N + PH
Sbjct: 275 LVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 321
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,767,338
Number of extensions: 1166853
Number of successful extensions: 4634
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013084
(978 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036335.1| glyoxylate reductase/hydroxypyruvate reductase ... 561 e-160
Alignment gi|NP_006614.2| D-3-phosphoglycerate dehydrogenase [Homo sapien... 134 2e-31
Alignment gi|NP_001012632.1| C-terminal-binding protein 1 isoform 2 [Homo... 80 4e-15
Alignment gi|NP_001319.1| C-terminal-binding protein 1 isoform 1 [Homo sa... 80 4e-15
Alignment gi|NP_001077383.1| C-terminal-binding protein 2 isoform 1 [Homo... 78 1e-14
Alignment gi|NP_001320.1| C-terminal-binding protein 2 isoform 1 [Homo sa... 78 1e-14
Alignment gi|NP_073713.2| C-terminal-binding protein 2 isoform 2 [Homo sa... 78 1e-14
>ref|NP_036335.1| glyoxylate reductase/hydroxypyruvate reductase [Homo sapiens].
Length = 328
Score = 561 bits (1446), Expect = e-160
Identities = 273/310 (88%), Positives = 297/310 (95%)
Frame = +3
Query: 48 MRRVRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLS 227
MR VRLMKVFVTRRIP EG LARAADCEVEQWDSDEPIP+++LERGVAGAHGLLCLLS
Sbjct: 1 MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLS 60
Query: 228 DRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL 407
D +DK++LD AGANLKVISTMSVG+DHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL
Sbjct: 61 DHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLL 120
Query: 408 TTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRF 587
TTCRRLPEAIEEVKNGGWTSWKPLW+CGYGLT+STVGI+GLGRIGQAIARRLKPFGV+RF
Sbjct: 121 TTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF 180
Query: 588 LYTGSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVF 767
LYTG QPRP+EAAEFQAEFV +LAA+SDFI+VACSLTPAT GLC+KDF+Q+MK+TAVF
Sbjct: 181 LYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVF 240
Query: 768 INISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYR 947
INISRG+VVNQDDLYQAL SG+IAAAGLDVT+PEPLPTNHPLLTLKNCVILPHIGSAT+R
Sbjct: 241 INISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHR 300
Query: 948 TRNTMSVLAA 977
TRNTMS+LAA
Sbjct: 301 TRNTMSLLAA 310
>ref|NP_006614.2| D-3-phosphoglycerate dehydrogenase [Homo sapiens].
Length = 533
Score = 134 bits (336), Expect = 2e-31
Identities = 83/261 (31%), Positives = 144/261 (55%), Gaps = 2/261 (0%)
Frame = +3
Query: 165 IPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIR 344
+ E+L + GL+ + ++ +++ A L+V+ GVD++ L+ ++GI
Sbjct: 36 LSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGIL 94
Query: 345 VGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIV 524
V TP+ + + AEL +++ R++P+A +K+G W K G L T+GI+
Sbjct: 95 VMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK---FMGTELNGKTLGIL 151
Query: 525 GLGRIGQAIARRLKPFGVRRFLYTGSQP--RPQEAAEFQAEFVPVLQLAAESDFIIVACS 698
GLGRIG+ +A R++ FG++ G P P+ +A F + +P+ ++ DFI V
Sbjct: 152 GLGRIGREVATRMQSFGMKTI---GYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTP 208
Query: 699 LTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLP 878
L P+T GL + + + + KK +N +RG +V++ L +AL SGQ A A LDV T EP P
Sbjct: 209 LLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-P 267
Query: 879 TNHPLLTLKNCVILPHIGSAT 941
+ L+ +N + PH+G++T
Sbjct: 268 RDRALVDHENVISCPHLGAST 288
>ref|NP_001012632.1| C-terminal-binding protein 1 isoform 2 [Homo sapiens].
Length = 429
Score = 79.7 bits (195), Expect = 4e-15
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 81 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALR 140
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+GI+GLGR+GQA+A R K FG Y
Sbjct: 141 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 200
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 201 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 260
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 261 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 304
>ref|NP_001319.1| C-terminal-binding protein 1 isoform 1 [Homo sapiens].
Length = 440
Score = 79.7 bits (195), Expect = 4e-15
Identities = 63/224 (28%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L++I + G D++ + GI V P + TA+ + +L RR + ++
Sbjct: 92 LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALR 151
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+GI+GLGR+GQA+A R K FG Y
Sbjct: 152 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 211
Query: 618 EAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVN 797
E A + L SD + + C L L + ++M++ A +N +RG +V+
Sbjct: 212 ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVD 271
Query: 798 QDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+ L QAL G+I A LDV EP + PL N + PH
Sbjct: 272 EKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 315
>ref|NP_001077383.1| C-terminal-binding protein 2 isoform 1 [Homo sapiens].
Length = 445
Score = 77.8 bits (190), Expect = 1e-14
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L+VI + G D++ + + GI V P + TA+ + +L RR + ++
Sbjct: 98 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 157
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++G GR GQA+A R K FG Y P Q
Sbjct: 158 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY---DPYLQ 214
Query: 618 EAAE--FQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGE 788
+ E + V LQ L +SD + + C+L L + ++M++ A +N +RG
Sbjct: 215 DGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGG 274
Query: 789 VVNQDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+V++ L QAL G+I A LDV EP PL N + PH
Sbjct: 275 LVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 321
>ref|NP_001320.1| C-terminal-binding protein 2 isoform 1 [Homo sapiens].
Length = 445
Score = 77.8 bits (190), Expect = 1e-14
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L+VI + G D++ + + GI V P + TA+ + +L RR + ++
Sbjct: 98 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 157
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++G GR GQA+A R K FG Y P Q
Sbjct: 158 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY---DPYLQ 214
Query: 618 EAAE--FQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGE 788
+ E + V LQ L +SD + + C+L L + ++M++ A +N +RG
Sbjct: 215 DGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGG 274
Query: 789 VVNQDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+V++ L QAL G+I A LDV EP PL N + PH
Sbjct: 275 LVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 321
>ref|NP_073713.2| C-terminal-binding protein 2 isoform 2 [Homo sapiens].
Length = 985
Score = 77.8 bits (190), Expect = 1e-14
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Frame = +3
Query: 270 LKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVK 449
L+VI + G D++ + + GI V P + TA+ + +L RR + ++
Sbjct: 638 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 697
Query: 450 NGGWT-SWKPLWMCGYGLTE---STVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 617
G S + + G T+G++G GR GQA+A R K FG Y P Q
Sbjct: 698 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY---DPYLQ 754
Query: 618 EAAE--FQAEFVPVLQ-LAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGE 788
+ E + V LQ L +SD + + C+L L + ++M++ A +N +RG
Sbjct: 755 DGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGG 814
Query: 789 VVNQDDLYQALTSGQIAAAGLDVTTPEPLP-TNHPLLTLKNCVILPH 926
+V++ L QAL G+I A LDV EP PL N + PH
Sbjct: 815 LVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 861
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,678,182
Number of extensions: 1412942
Number of successful extensions: 5772
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5736
Number of HSP's successfully gapped: 7
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013084
(978 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 274 9e-71
>Sscrofa_Chr01
|| Length = 315321322
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 645 gtgcccgtcctccagctggccgccgagtctgatttcatcattgtggcctgctccttaaca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266098550 gtgcccgtcctccagctggccgccgagtctgatttcatcattgtggcctgctccttaaca 266098609
Query: 705 cctgcaaccagagggctctgcagcaaggacttctaccagcggatgaagaaaacggctgtg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266098610 cctgcaaccagagggctctgcagcaaggacttctaccagcggatgaagaaaacggctgtg 266098669
Query: 765 tttatcaacatcagcagg 782
||||||||||||||||||
Sbjct: 266098670 tttatcaacatcagcagg 266098687
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 779 caggggagaagtggtaaaccaggacgacctgtaccaggccctgaccagcgggcagattgc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266099928 caggggagaagtggtaaaccaggacgacctgtaccaggccctgaccagcgggcagattgc 266099987
Query: 839 agctgctggactggatgtgacgaccccggaaccactgcctacaaaccaccctctcctgac 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266099988 agctgctggactggatgtgacgaccccggaaccactgcctacaaaccaccctctcctgac 266100047
Query: 899 cctgaagaactgtg 912
||||||||||||||
Sbjct: 266100048 cctgaagaactgtg 266100061
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 131 ctgtgaggtggagcagtgggattccgatgagcccatccccagtgaggacctggaacgggg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266092953 ctgtgaggtggagcagtgggattccgatgagcccatccccagtgaggacctggaacgggg 266093012
Query: 191 cgtggccggggcgcatggcctgctctgcctcctctctgaccgcatagacaagaagctcct 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266093013 cgtggccggggcgcatggcctgctctgcctcctctctgaccgcatagacaagaagctcct 266093072
Query: 251 ggacactgcagg 262
||||||||||||
Sbjct: 266093073 ggacactgcagg 266093084
Score = 240 bits (121), Expect = 1e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 6 gtccgcgggatctgggcccagaatccggcggctcctgggtgcatgaggcgagtgagactc 65
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 266090898 gtccgcgggatctgggcccagaatcgggcggctcctgggtgcatgaggcgagtgagactc 266090957
Query: 66 atgaaggtgtttgtcacgcgcaggatccccccggagggcagcgctacgctcgcccgcgcc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266090958 atgaaggtgtttgtcacgcgcaggatccccccggagggcagcgctacgctcgcccgcgcc 266091017
Query: 126 gcaga 130
|||||
Sbjct: 266091018 gcaga 266091022
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 539 aggccaggccattgctcggcgtctgaaaccattcggtgtccggagatttctatacacagg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266097742 aggccaggccattgctcggcgtctgaaaccattcggtgtccggagatttctatacacagg 266097801
Query: 599 gagccagcccaggcctcaggaagcagcggaattccaggcagagtttg 645
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266097802 gagccagcccaggcctcaggaagcagcggaattccaggcagagtttg 266097848
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 452 cggtggctggacatcgtggaagcccctgtggatgtgcggctacggcctcacggagagcac 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266096244 cggtggctggacatcgtggaagcccctgtggatgtgcggctacggcctcacggagagcac 266096303
Query: 512 cgtcggcatcgttggcctggggcgcatagg 541
||||||||||||||||||||||||||||||
Sbjct: 266096304 cgtcggcatcgttggcctggggcgcatagg 266096333
Score = 151 bits (76), Expect = 8e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 259 caggagccaatctcaaagtcatcagcacaatgtctgtgggtgtcgaccacttggctttgg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266093457 caggagccaatctcaaagtcatcagcacaatgtctgtgggtgtcgaccacttggctttgg 266093516
Query: 319 atgaaatcaagaagcg 334
||||||||||||||||
Sbjct: 266093517 atgaaatcaagaagcg 266093532
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 912 gtgatcctgccccacatcggcagtgccacctacaggacccgcaacaccatgtccgtgttg 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266101399 gtgatcctgccccacatcggcagtgccacctacaggacccgcaacaccatgtccgtgttg 266101458
Query: 972 gcagcta 978
|||||||
Sbjct: 266101459 gcagcta 266101465
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,074,049
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 8
Length of query: 978
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 957
Effective length of database: 2,808,413,156
Effective search space: 2687651390292
Effective search space used: 2687651390292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)