Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013085
(679 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106786.1| 6.8 kDa mitochondrial proteolipid [Bos tauru... 84 8e-17
>ref|NP_001106786.1| 6.8 kDa mitochondrial proteolipid [Bos taurus].
Length = 60
Score = 84.3 bits (207), Expect = 8e-17
Identities = 38/44 (86%), Positives = 40/44 (90%)
Frame = +2
Query: 95 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 226
MLQSLIK VWIP+KPYYTQ YQEIWVG GLM +IVYKIRSADKR
Sbjct: 1 MLQSLIKKVWIPMKPYYTQAYQEIWVGTGLMAYIVYKIRSADKR 44
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 20,838,454
Number of extensions: 521779
Number of successful extensions: 2928
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2890
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 127
Effective length of database: 14,405,662
Effective search space: 1829519074
Effective search space used: 1829519074
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013085
(679 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 21,492,979
Number of extensions: 473370
Number of successful extensions: 3053
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3018
Number of HSP's successfully gapped: 0
Length of query: 226
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 127
Effective length of database: 15,574,240
Effective search space: 1977928480
Effective search space used: 1977928480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013085
(679 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359777.1| PREDICTED: hypothetical protein LOC100625369... 108 3e-24
Alignment gi|XP_003128805.1| PREDICTED: 6.8 kDa mitochondrial proteolipid... 95 4e-20
Alignment gi|XP_003128804.1| PREDICTED: 6.8 kDa mitochondrial proteolipid... 95 4e-20
>ref|XP_003359777.1| PREDICTED: hypothetical protein LOC100625369 [Sus scrofa].
Length = 146
Score = 108 bits (270), Expect = 3e-24
Identities = 65/119 (54%), Positives = 68/119 (57%)
Frame = +2
Query: 95 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKRXXXXXXXXXXXXXXXX 274
MLQSLIKNV IP+KPYYTQVYQEIWVGMGLMG IVYKIRSADKR
Sbjct: 1 MLQSLIKNVLIPMKPYYTQVYQEIWVGMGLMGLIVYKIRSADKRSKALKTSSPAPAHDHY 60
Query: 275 XXXXLGWDVGLAAPWDCAWHVTSTGSSAAALQNKPTREIHPACAVTLPPARVPLRKPGA 451
L WDVGLA WD + N P R PA V+LP ARV LR P A
Sbjct: 61 SPPLLRWDVGLAVLWDPGTLHPLVAVPLPSRINLPMRPTLPA-PVSLPLARVLLRNPRA 118
>ref|XP_003128805.1| PREDICTED: 6.8 kDa mitochondrial proteolipid-like isoform 2 [Sus
scrofa].
Length = 60
Score = 94.7 bits (234), Expect = 4e-20
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +2
Query: 95 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 226
MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR
Sbjct: 1 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 44
>ref|XP_003128804.1| PREDICTED: 6.8 kDa mitochondrial proteolipid-like isoform 1 [Sus
scrofa].
Length = 60
Score = 94.7 bits (234), Expect = 4e-20
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +2
Query: 95 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 226
MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR
Sbjct: 1 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 44
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,092,465
Number of extensions: 435141
Number of successful extensions: 1975
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 3
Length of query: 226
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,978,717
Effective search space: 1176211927
Effective search space used: 1176211927
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013085
(679 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081636.1| 6.8 kDa mitochondrial proteolipid [Mus musculus]. 81 8e-16
>ref|NP_081636.1| 6.8 kDa mitochondrial proteolipid [Mus musculus].
Length = 58
Score = 80.9 bits (198), Expect = 8e-16
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = +2
Query: 95 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 226
M Q+LI+ VW+P+KPYYTQVYQEIWVG+GLM IVYKIRSADKR
Sbjct: 1 MFQTLIQKVWVPMKPYYTQVYQEIWVGVGLMSLIVYKIRSADKR 44
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 17,611,206
Number of extensions: 379896
Number of successful extensions: 2154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2135
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 128
Effective length of database: 12,674,031
Effective search space: 1622275968
Effective search space used: 1622275968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013085
(679 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001120865.1| 6.8 kDa mitochondrial proteolipid isoform 2 ... 91 1e-18
Alignment gi|NP_004885.1| 6.8 kDa mitochondrial proteolipid isoform 1 [Ho... 90 2e-18
>ref|NP_001120865.1| 6.8 kDa mitochondrial proteolipid isoform 2 [Homo sapiens].
Length = 75
Score = 90.5 bits (223), Expect = 1e-18
Identities = 38/45 (84%), Positives = 45/45 (100%)
Frame = +2
Query: 92 EMLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 226
+MLQS+IKN+WIP+KPYYT+VYQEIW+GMGLMGFIVYKIR+ADKR
Sbjct: 17 QMLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKR 61
>ref|NP_004885.1| 6.8 kDa mitochondrial proteolipid isoform 1 [Homo sapiens].
Length = 58
Score = 89.7 bits (221), Expect = 2e-18
Identities = 38/44 (86%), Positives = 44/44 (100%)
Frame = +2
Query: 95 MLQSLIKNVWIPLKPYYTQVYQEIWVGMGLMGFIVYKIRSADKR 226
MLQS+IKN+WIP+KPYYT+VYQEIW+GMGLMGFIVYKIR+ADKR
Sbjct: 1 MLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKR 44
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 20,914,415
Number of extensions: 453042
Number of successful extensions: 2875
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2846
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 127
Effective length of database: 15,033,728
Effective search space: 1909283456
Effective search space used: 1909283456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013085
(679 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 587 e-165
Sscrofa_Chr16 422 e-115
Sscrofa_Chr06 236 1e-59
Sscrofa_Chr03 170 6e-40
Sscrofa_Chr01 170 6e-40
Sscrofa_Chr09 143 1e-31
Sscrofa_Chr15 127 8e-27
Sscrofa_Chr17 70 2e-09
Sscrofa_Chr14 68 7e-09
>Sscrofa_Chr07
|| Length = 134764511
Score = 587 bits (296), Expect = e-165
Identities = 296/296 (100%)
Strand = Plus / Minus
Query: 240 aagcttccagtcctgctcctgctcatggccaccactaaccacctccgctcggatgggacg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131028332 aagcttccagtcctgctcctgctcatggccaccactaaccacctccgctcggatgggacg 131028273
Query: 300 tcggcctggccgcaccatgggattgtgcgtggcacgtcacgtccactggtagcagtgctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131028272 tcggcctggccgcaccatgggattgtgcgtggcacgtcacgtccactggtagcagtgctg 131028213
Query: 360 ctgccctgcagaataaacctacccgtgagatccaccctgcctgcgccgtgaccctcccgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131028212 ctgccctgcagaataaacctacccgtgagatccaccctgcctgcgccgtgaccctcccgc 131028153
Query: 420 cggccagagtcccgctgagaaagccgggggcggaggggggagagcgccatgggcgcaggc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131028152 cggccagagtcccgctgagaaagccgggggcggaggggggagagcgccatgggcgcaggc 131028093
Query: 480 gtgggggcggatctaggcactcgctctggtgggcaataaacatctgttctgcacgt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131028092 gtgggggcggatctaggcactcgctctggtgggcaataaacatctgttctgcacgt 131028037
Score = 250 bits (126), Expect = 8e-64
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 93 agatgcttcagagccttatcaagaacgtttggatccccttgaagccctactacacccaag 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131030738 agatgcttcagagccttatcaagaacgtttggatccccttgaagccctactacacccaag 131030679
Query: 153 tttaccaggagatttgggtaggaatggggttgatgggattcatcgtctataaaatcagga 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131030678 tttaccaggagatttgggtaggaatggggttgatgggattcatcgtctataaaatcagga 131030619
Query: 213 gtgctg 218
||||||
Sbjct: 131030618 gtgctg 131030613
Score = 176 bits (89), Expect = 1e-41
Identities = 92/93 (98%)
Strand = Plus / Minus
Query: 2 aggcaccgcgcggcgcctgcgcgttgagtgacctttctgagtcgtcggttgtggttgggt 61
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 131034019 aggcaccgcgcggcgcctgcgcgttcagtgacctttctgagtcgtcggttgtggttgggt 131033960
Query: 62 tggggctgctggagccgctagtcctgcgccgag 94
|||||||||||||||||||||||||||||||||
Sbjct: 131033959 tggggctgctggagccgctagtcctgcgccgag 131033927
>Sscrofa_Chr16
|| Length = 86898991
Score = 422 bits (213), Expect = e-115
Identities = 398/458 (86%), Gaps = 5/458 (1%)
Strand = Plus / Plus
Query: 72 ggagccgctagtcctgcgccgagatgcttcagagccttatcaagaacgtttggatcccct 131
|||||| ||||||||||||| ||||||||||||||||||||||||| |||| |||||||
Sbjct: 6077466 ggagccactagtcctgcgccaagatgcttcagagccttatcaagaatgttttgatcccca 6077525
Query: 132 tgaagccctactacacccaagtttaccaggagatttgggtaggaatggggttgatgggat 191
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6077526 tgaagccctactatacccaagtgtaccaggagatttgggtaggaatggggttgatgggac 6077585
Query: 192 tcatcgtctataaaatcaggagtgctgataaaagaagtaaagccttgaaagcttccagtc 251
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6077586 tcattgtctataaaatcaggagtgctgataaaagaagtaaagccttgaaaacttccagtc 6077645
Query: 252 ctgctcctgctcatggccaccactaaccacctccgctcggatgggacgtcggcctggccg 311
||||||||||||||| |||| ||| |||||||| |||| ||||||| || |||||||| |
Sbjct: 6077646 ctgctcctgctcatgaccactactcaccacctctgctcagatgggatgttggcctggctg 6077705
Query: 312 caccatgggattgtgcgtggcacgtcacgtccactggtagcagtgctgctgccctgcaga 371
| |||||| | ||| |||| | |||||| |||||||||| |||||||| ||||
Sbjct: 6077706 tgctgtgggat----cctgggacgttgcatccacttgtagcagtgccgctgccctccaga 6077761
Query: 372 ataaacctacccgtgagatccaccctgcctgc-gccgtgaccctcccgccggccagagtc 430
||||||||||| ||||| |||| |||||||| ||||| | ||||| | ||||||||||
Sbjct: 6077762 ataaacctacctatgagacccacactgcctgctcccgtgtctctcccactggccagagtc 6077821
Query: 431 ccgctgagaaagccgggggcggaggggggagagcgccatgggcgcaggcgtgggggcgga 490
| ||||||||| ||| |||| || | | |||| | | || | |||||||||||||| ||
Sbjct: 6077822 ctgctgagaaacccgagggctgaagagtgagacctcgattagtgcaggcgtgggggcaga 6077881
Query: 491 tctaggcactcgctctggtgggcaataaacatctgttc 528
||||||||||||||||| ||||||||||||| ||||||
Sbjct: 6077882 tctaggcactcgctctgatgggcaataaacacctgttc 6077919
>Sscrofa_Chr06
|| Length = 157765593
Score = 236 bits (119), Expect = 1e-59
Identities = 171/187 (91%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 113 aagaacgtttggatccccttgaagccctactacacccaagtttaccaggagatttgggta 172
||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 139124326 aagaatgtttggatcccat-gaagccctactatacccaagtttaccaggagatttgggta 139124384
Query: 173 ggaatggggttgatgggattcatcgtctataaaatcaggagtgctgataaaagaagtaaa 232
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 139124385 ggaatggggttgatgggattcattgtttataaaatcaggagtgctgataaaagaagtaaa 139124444
Query: 233 gccttgaaagcttccagtcctgctcctgctcatggccaccactaaccacctccgctcgga 292
|||||||||||||||||||||| |||||||| | ||| | ||||||| ||| || |||
Sbjct: 139124445 gccttgaaagcttccagtcctgtgcctgctcacgtccatctctaaccagctctacttgga 139124504
Query: 293 tgggacg 299
|||||||
Sbjct: 139124505 tgggacg 139124511
Score = 230 bits (116), Expect = 8e-58
Identities = 182/203 (89%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 79 ctagtcctgcgccgagatgcttcagagccttatcaagaacgtttggatccccttgaagcc 138
|||||||||| || ||||||||||||||| || ||||| |||||||||||| |||||||
Sbjct: 111411997 ctagtcctgcaccaggatgcttcagagcctcattaagaatgtttggatccccatgaagcc 111412056
Query: 139 ctac--tacacccaagtttaccaggagatttgggtaggaatggggttgatgggattcatc 196
|||| || ||||||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 111412057 ctaccatatacccaagtttaccaggagatttgagtaggaatggggtttatgggactcatc 111412116
Query: 197 gtctataaaatcaggagtgctgataaaagaagtaaagccttgaaagcttccagtcctgct 256
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 111412117 atctacaaaatcaggagtgctgataaaagaaataaagccttgaaagcttccagtcccacg 111412176
Query: 257 cctgctcatggccaccactaacc 279
||||||||||||||||| ||||
Sbjct: 111412177 tctgctcatggccaccacaaacc 111412199
>Sscrofa_Chr03
|| Length = 144787322
Score = 170 bits (86), Expect = 6e-40
Identities = 122/134 (91%)
Strand = Plus / Minus
Query: 57 tgggttggggctgctggagccgctagtcctgcgccgagatgcttcagagccttatcaaga 116
||||||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 67832825 tgggttgtggctgcctgagccgctagtcctttgccgagatgcttcagagccttattaaga 67832766
Query: 117 acgtttggatccccttgaagccctactacacccaagtttaccaggagatttgggtaggaa 176
| || || |||||| ||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 67832765 atgtctgaatccccatgaagccctactatacccaagtttaccaggagatttggggaggaa 67832706
Query: 177 tggggttgatggga 190
||||||||||||||
Sbjct: 67832705 tggggttgatggga 67832692
Score = 103 bits (52), Expect = 1e-19
Identities = 127/152 (83%)
Strand = Plus / Minus
Query: 119 gtttggatccccttgaagccctactacacccaagtttaccaggagatttgggtaggaatg 178
|||||||||||| ||||||| | | ||||||||||||||||| |||| ||||||||
Sbjct: 135067259 gtttggatccccacgaagcccggcgagacccaagtttaccaggaaccttggataggaatg 135067200
Query: 179 gggttgatgggattcatcgtctataaaatcaggagtgctgataaaagaagtaaagccttg 238
||||||||||| | |||| | || ||| |||||||||||||| ||||||| ||||||||
Sbjct: 135067199 gggttgatgggctccatcatttacaaactcaggagtgctgatcaaagaaggaaagccttc 135067140
Query: 239 aaagcttccagtcctgctcctgctcatggcca 270
||||| || |||| || |||||||| |||||
Sbjct: 135067139 aaagcgtctggtccggcgcctgctcacggcca 135067108
Score = 89.7 bits (45), Expect = 2e-15
Identities = 133/161 (82%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 120 tttggatccccttgaagccctactacacccaagtttaccaggagatttgggtaggaatgg 179
||||||||||| |||| | |||||| |||||||||| | |||||||||||||| ||||
Sbjct: 68983522 tttggatccccatgaacctctactatacccaagtttgctaggagatttgggtaaccatgg 68983463
Query: 180 ggttgatgggattcatcgtctataaaatcaggagtgctgataaaagaagtaaagccttga 239
||||| | | |||| | ||||||||||| |||||| ||||||||||||||| |||
Sbjct: 68983462 agttgaggagcttcagaatttataaaatcagaagtgctaataaaagaagtaaagaactga 68983403
Query: 240 aagcttccagtcctgctcctgctcatggccaccactaacca 280
|||||| || |||||| ||||||||||| || || ||||||
Sbjct: 68983402 aagctt-caatcctgcacctgctcatggtcatcattaacca 68983363
>Sscrofa_Chr01
|| Length = 315321322
Score = 170 bits (86), Expect = 6e-40
Identities = 227/271 (83%), Gaps = 6/271 (2%)
Strand = Plus / Minus
Query: 113 aagaacgtttggatccccttgaagccctactacacccaagtttaccaggagatttgggta 172
||||| |||||||||||| ||| ||||| ||| |||| |||| |||| || |||||||||
Sbjct: 18519159 aagaatgtttggatccccatgaggccctgctatacccgagttcaccatgaaatttgggta 18519100
Query: 173 ggaatggggttgatgggattcatcgtctataaaatcaggagtgctgataaaagaagtaaa 232
|||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 18519099 ggaatggggttgatggc-ttcaccgtttataaaatcaggagtgctgataaaagaagtaaa 18519041
Query: 233 gccttgaaagcttccagtcctgctcctgctcatggccaccactaaccacctccgctcgga 292
||||||||||| ||||||||| ||||||||||| || || |||||| |||| || | |
Sbjct: 18519040 accttgaaagctcccagtcctgtgcctgctcatgggcatcattaaccagctccacttgaa 18518981
Query: 293 tgggacgtcggcctggccgcaccatgggattgtgcgtggcacgtcacgtccactggtagc 352
|||||||| | ||||| | | ||||||| |||| |||||| || |||| |||||
Sbjct: 18518980 ggggacgtcagtctggctgtgctgtgggatt----gtgggacgtcatgtacacttgtagc 18518925
Query: 353 agtgctgctgccctgca-gaataaacctacc 382
||||| |||||||||| |||||||| ||||
Sbjct: 18518924 agtgccactgccctgcatgaataaacatacc 18518894
Score = 157 bits (79), Expect = 9e-36
Identities = 229/276 (82%), Gaps = 11/276 (3%)
Strand = Plus / Plus
Query: 146 acccaagtttaccaggagatttgggtaggaatggggttgatgggattcatcgtctataaa 205
|||||||||||||||||||| || ||| |||||||||||||||| |||| |||||||||
Sbjct: 276110773 acccaagtttaccaggagatctgactagaaatggggttgatgggactcattgtctataaa 276110832
Query: 206 atcaggagtgctgataaaagaagtaaagccttgaaagcttccagtcctgctcctgctcat 265
||||||| |||| ||||||| |||||||||||||||||||||||| | | |||||
Sbjct: 276110833 atcaggattgctaataaaag-----aagccttgaaagcttccagtcctgagcttcctcat 276110887
Query: 266 ggccaccactaaccacctccgctcggatgggacgtcggcctggccgcaccatgggattgt 325
|| |||||||||||| ||| | |||||||||||| ||||||| | | ||||||
Sbjct: 276110888 gggcaccactaaccagctctctttggatgggacgtcagcctggctgtgctgtgggat--- 276110944
Query: 326 gcgtggcacgtcacgtccactggtagcagtgctgctgccctgca-gaataaacctacccg 384
||||| ||||||| |||||| |||||||||| |||||||||| |||||||| ||||
Sbjct: 276110945 -cgtgggacgtcacatccacttgtagcagtgccactgccctgcaggaataaacataccta 276111003
Query: 385 tgagatccaccctgcctgcgcc-gtgaccctcccgc 419
||||| |||| |||||||| || ||| |||||||||
Sbjct: 276111004 tgagacccacactgcctgccccggtgtccctcccgc 276111039
Score = 60.0 bits (30), Expect = 2e-06
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 64 gggctgctggagccgctagtcctgcgccgagatgcttcagagccttatcaagaacgtttg 123
||||||| ||||| || ||| || |||||||||||||| |||||||| ||||| |||||
Sbjct: 18519479 gggctgcctgagcctctggtcttgtgccgagatgcttcaaagccttattaagaatgtttg 18519420
Query: 124 gatccc 129
||||||
Sbjct: 18519419 gatccc 18519414
>Sscrofa_Chr09
|| Length = 153670197
Score = 143 bits (72), Expect = 1e-31
Identities = 168/199 (84%), Gaps = 2/199 (1%)
Strand = Plus / Plus
Query: 73 gagccgctagtcctgcgccgagatgcttcagagccttatcaagaacgtttggatcccctt 132
||||| || |||||| || ||||||||||| ||||||| || || |||||||||||| |
Sbjct: 147561557 gagcccctggtcctgtgctgagatgcttcaaagccttagtaacaatgtttggatccccat 147561616
Query: 133 gaagccctactacacccaagtttaccaggagatttgggtaggaatggggttgatgggatt 192
||||| ||| | |||||||||| |||||| |||||||||||| ||||||||||||| ||
Sbjct: 147561617 gaagctctattctacccaagtttcccaggaaatttgggtaggagtggggttgatgggctt 147561676
Query: 193 catcgtctataaaatcaggagtgctgataaaagaagtaaagccttgaaagcttccagtcc 252
| | | | || | |||| |||| |||||||||||||||||| ||||||||||||| |||
Sbjct: 147561677 c--cttatttatagtcagaagtgttgataaaagaagtaaagctttgaaagcttccaatcc 147561734
Query: 253 tgctcctgctcatggccac 271
||| || ||||||||||||
Sbjct: 147561735 tgcgcccgctcatggccac 147561753
>Sscrofa_Chr15
|| Length = 157681621
Score = 127 bits (64), Expect = 8e-27
Identities = 103/116 (88%)
Strand = Plus / Minus
Query: 149 caagtttaccaggagatttgggtaggaatggggttgatgggattcatcgtctataaaatc 208
||||||||||||||||| ||||||||||||| ||||| ||| |||||| | |||||||||
Sbjct: 39309 caagtttaccaggagatatgggtaggaatggagttgaggggcttcatcatttataaaatc 39250
Query: 209 aggagtgctgataaaagaagtaaagccttgaaagcttccagtcctgctcctgctca 264
| ||||||||||||||||||||||| |||||| |||| ||||||| ||||||||
Sbjct: 39249 aagagtgctgataaaagaagtaaagttttgaaaacttcaagtcctgggcctgctca 39194
Score = 127 bits (64), Expect = 8e-27
Identities = 103/116 (88%)
Strand = Plus / Plus
Query: 149 caagtttaccaggagatttgggtaggaatggggttgatgggattcatcgtctataaaatc 208
||||||||||||||||| ||||||||||||| ||||| ||| |||||| | |||||||||
Sbjct: 157201874 caagtttaccaggagatatgggtaggaatggagttgaggggcttcatcatttataaaatc 157201933
Query: 209 aggagtgctgataaaagaagtaaagccttgaaagcttccagtcctgctcctgctca 264
| ||||||||||||||||||||||| |||||| |||| ||||||| ||||||||
Sbjct: 157201934 aagagtgctgataaaagaagtaaagttttgaaaacttcaagtcctgggcctgctca 157201989
>Sscrofa_Chr17
|| Length = 69701581
Score = 69.9 bits (35), Expect = 2e-09
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 200 tataaaatcaggagtgctgataaaagaagtaaagccttgaaagcttccagtcctg 254
||||||||||| ||||||| |||||||| |||||||||| || ||||||||||||
Sbjct: 39915115 tataaaatcagaagtgctgctaaaagaaataaagccttggaaacttccagtcctg 39915061
>Sscrofa_Chr14
|| Length = 153851969
Score = 67.9 bits (34), Expect = 7e-09
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 223 aagaagtaaagccttgaaagcttccagtcctgctcctgctcatggccaccactaacca 280
||||||||| ||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 89089416 aagaagtaatcccttgaaagcttccagtcctgaacctgctcatggccatcattaacca 89089359
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 13,274,814
Number of extensions: 318
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 22
Length of query: 679
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 658
Effective length of database: 2,808,413,156
Effective search space: 1847935856648
Effective search space used: 1847935856648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)