Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013095
(1578 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157926.1| glutathione peroxidase 3 [Canis lupus famili... 424 e-119
Alignment gi|NP_001003213.1| epididymal secretory glutathione peroxidase ... 305 1e-82
Alignment gi|XP_855017.1| PREDICTED: similar to Plasma glutathione peroxi... 283 2e-76
Alignment gi|XP_545450.2| PREDICTED: similar to glutathione peroxidase 6 ... 247 3e-65
Alignment gi|NP_001108591.1| glutathione peroxidase 1 [Canis lupus famili... 160 3e-39
Alignment gi|NP_001108607.1| glutathione peroxidase 2 [Canis lupus famili... 147 2e-35
Alignment gi|XP_535237.1| PREDICTED: similar to F26E4.12 isoform 1 [Canis... 82 1e-15
Alignment gi|XP_859275.1| PREDICTED: similar to F26E4.12 isoform 2 [Canis... 76 8e-14
Alignment gi|XP_848225.1| PREDICTED: similar to F26E4.12 [Canis familiari... 73 7e-13
Alignment gi|XP_532572.2| PREDICTED: similar to glutathione peroxidase 7 ... 70 6e-12
>ref|NP_001157926.1| glutathione peroxidase 3 [Canis lupus familiaris].
Length = 226
Score = 424 bits (1091), Expect = e-119
Identities = 197/224 (87%), Positives = 215/224 (95%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
MAR RASCL+SLLLAGF+PPSRGQEKSKTDC+ GVSGTIYEYGALTI+GEEYIPFK+YA
Sbjct: 1 MARLLRASCLLSLLLAGFVPPSRGQEKSKTDCHGGVSGTIYEYGALTINGEEYIPFKQYA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GKY+LFVNVASY GLTGQY+ELNALQEE PFGLVILGFPCNQFGKQEPG+NSEIL +L+
Sbjct: 61 GKYILFVNVASYUGLTGQYLELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPSLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPGGGF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPTSELLGSPGRLFWEPMKVHDIR
Sbjct: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPGRLFWEPMKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 738
WNFEKFLVGPDG+P+MRWYHRTT++TVK+DILAYMRR+AAL K
Sbjct: 181 WNFEKFLVGPDGIPIMRWYHRTTVSTVKMDILAYMRRQAALAIK 224
>ref|NP_001003213.1| epididymal secretory glutathione peroxidase precursor [Canis lupus
familiaris].
Length = 221
Score = 305 bits (780), Expect = 1e-82
Identities = 143/217 (65%), Positives = 175/217 (80%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
M + AS ++ +LL F+ + EK+K DCY+ V GTIYEY ALT++G E I FK+Y
Sbjct: 1 MTAWLGASYVLPILLVSFVQTNAKPEKTKMDCYKDVKGTIYEYEALTLNGNERIQFKQYP 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
K+VLFVNVA+Y GLT QY ELN+LQEE +P GLV+LGFPCNQFGKQ PG+NSEIL L+
Sbjct: 61 RKHVLFVNVATYCGLTAQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPG G++PNFQLFEKGDVNGEKEQK +TFLK +CP SE+LGS + W+P+KVHDIR
Sbjct: 121 YVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
WNFEKFLVGPDGVPV+RW+HRT I+TVK DIL Y+++
Sbjct: 181 WNFEKFLVGPDGVPVLRWFHRTPISTVKEDILVYLKQ 217
>ref|XP_855017.1| PREDICTED: similar to Plasma glutathione peroxidase precursor
(GSHPx-P) [Canis familiaris].
Length = 147
Score = 283 bits (725), Expect = 2e-76
Identities = 128/145 (88%), Positives = 140/145 (96%)
Frame = +1
Query: 304 VELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGD 483
+ELNALQEE PFGLVILGFPCNQFGKQEPG+NSEIL +L+YVRPGGGF+PNFQLFEKGD
Sbjct: 1 MELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGD 60
Query: 484 VNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWY 663
VNGEKEQKFYTFLKN+CPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDG+P+MRWY
Sbjct: 61 VNGEKEQKFYTFLKNSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWY 120
Query: 664 HRTTINTVKLDILAYMRRRAALEAK 738
HRTT++TVK+DILAYMRR+AAL K
Sbjct: 121 HRTTVSTVKMDILAYMRRQAALAIK 145
>ref|XP_545450.2| PREDICTED: similar to glutathione peroxidase 6 [Canis familiaris].
Length = 154
Score = 247 bits (630), Expect = 3e-65
Identities = 110/137 (80%), Positives = 127/137 (92%)
Frame = +1
Query: 307 ELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDV 486
ELNALQEE + FG+V+LGFPCNQFGKQEPG NSEILS L++VRPGGGF+PNFQLFEKGDV
Sbjct: 14 ELNALQEELKSFGVVVLGFPCNQFGKQEPGKNSEILSGLKHVRPGGGFVPNFQLFEKGDV 73
Query: 487 NGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYH 666
NGEKEQK +TFLKN+CPPTS+LLGS +LFWEPMKVHDIRWNFEKFLVGPDGVPVMRW+H
Sbjct: 74 NGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFH 133
Query: 667 RTTINTVKLDILAYMRR 717
+ ++TVK DILAY+++
Sbjct: 134 QAPVSTVKADILAYLKQ 150
>ref|NP_001108591.1| glutathione peroxidase 1 [Canis lupus familiaris].
Length = 205
Score = 160 bits (405), Expect = 3e-39
Identities = 84/182 (46%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Frame = +1
Query: 181 TIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVIL 357
++Y + A + G E + GK +L NVAS G T + Y ++N LQ P GLV+L
Sbjct: 17 SVYAFSARPLAGGEPMSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 76
Query: 358 GFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACP 537
GFPCNQFG QE N EIL++L+YVRPGGGF PNF LFEK +VNG + + FL+ + P
Sbjct: 77 GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLP 136
Query: 538 ----PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILA 705
T+ L+ P + W P+ +D+ WNFEKFLVGPDGVPV R+ R ++ DI A
Sbjct: 137 APSDDTTALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEA 196
Query: 706 YM 711
+
Sbjct: 197 LL 198
>ref|NP_001108607.1| glutathione peroxidase 2 [Canis lupus familiaris].
Length = 190
Score = 147 bits (372), Expect = 2e-35
Identities = 83/178 (46%), Positives = 114/178 (64%), Gaps = 8/178 (4%)
Frame = +1
Query: 172 VSGTIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGL 348
++ + Y+ A+++DGE+ + F + G+ VL NVAS G T + + +LN LQ F P L
Sbjct: 4 IAKSFYDLSAISLDGEK-VDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRL 61
Query: 349 VILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKN 528
V+LGFPCNQFG QE N EIL++L+YVRPGGGF P F L +K +VNG+ E + +LK+
Sbjct: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKD 121
Query: 529 ACP-----PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRT--TIN 681
P P S L+ P + W P++ D+ WNFEKFL+GP+G P R Y RT TIN
Sbjct: 122 KLPYPYDDPLS-LMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRR-YSRTFPTIN 177
>ref|XP_535237.1| PREDICTED: similar to F26E4.12 isoform 1 [Canis familiaris].
Length = 209
Score = 82.4 bits (202), Expect = 1e-15
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 1/165 (0%)
Frame = +1
Query: 226 IPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDN 402
+ +K+ GK L VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP +
Sbjct: 60 VSLEKFKGKVTLVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPS 119
Query: 403 SEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWE 582
E++S R + F +F K + G + + FL ++ E
Sbjct: 120 KEVVSFAR-----NNYGATFPIFHKIKILGSEADPAFRFLVDSSKK-------------E 161
Query: 583 PMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
P RWNF K+LV P+G V W I ++ +I A +R+
Sbjct: 162 P------RWNFWKYLVNPEGQVVKSWRPEEPIEVIRPEIAALVRQ 200
>ref|XP_859275.1| PREDICTED: similar to F26E4.12 isoform 2 [Canis familiaris].
Length = 158
Score = 76.3 bits (186), Expect = 8e-14
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Frame = +1
Query: 250 KYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
K L VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP + E++S R
Sbjct: 17 KVTLVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFAR 76
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
+ F +F K + G + + FL ++ EP R
Sbjct: 77 -----NNYGATFPIFHKIKILGSEADPAFRFLVDSSKK-------------EP------R 112
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
WNF K+LV P+G V W I ++ +I A +R+
Sbjct: 113 WNFWKYLVNPEGQVVKSWRPEEPIEVIRPEIAALVRQ 149
>ref|XP_848225.1| PREDICTED: similar to F26E4.12 [Canis familiaris].
Length = 209
Score = 73.2 bits (178), Expect = 7e-13
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Frame = +1
Query: 226 IPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDN 402
+ +K+ GK L VNVAS L + Y+ + L +EF PF +L FPCNQFG+ EP +
Sbjct: 60 VSLEKFKGKVTLVVNVASDCQLRDRNYLAVQELHKEFGPFHFSVLAFPCNQFGESEPFPS 119
Query: 403 SEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWE 582
E++S R + F +F K + G + + FL ++ E
Sbjct: 120 KEVVSFAR-----NNYGATFPIFHKIKILGSEADPAFRFLVDSSKK-------------E 161
Query: 583 PMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILA 705
P RWNF K+LV P+ V W I ++ +I A
Sbjct: 162 P------RWNFWKYLVNPEEQVVKSWRPEEPIEVIRPEIAA 196
>ref|XP_532572.2| PREDICTED: similar to glutathione peroxidase 7 [Canis familiaris].
Length = 222
Score = 70.1 bits (170), Expect = 6e-12
Identities = 54/154 (35%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Frame = +1
Query: 259 LFVNVASY*GLT-GQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVR 435
L VNVAS G T G Y L LQ + P +L FPCNQFG+QEP + EI S R
Sbjct: 84 LVVNVASACGFTDGHYRSLQQLQRDLGPRHFTVLAFPCNQFGQQEPDGDREIESFARRT- 142
Query: 436 PGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNF 615
+ +F +F K V G A P L + G+ EP WNF
Sbjct: 143 ----YGVSFPMFSKVAVTG----------TGAHPAFKYLTQTSGK---EP------TWNF 179
Query: 616 EKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
K+LV PDG V W ++ ++ I A +R+
Sbjct: 180 WKYLVAPDGKVVGAWDPTVSVEDIRPQITALVRK 213
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,698,229
Number of extensions: 2562254
Number of successful extensions: 13633
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 13243
Number of HSP's successfully gapped: 10
Length of query: 526
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 419
Effective length of database: 15,307,552
Effective search space: 6413864288
Effective search space used: 6413864288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013095
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013095
(1578 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776502.1| glutathione peroxidase 3 precursor [Bos taurus]. 429 e-120
Alignment gi|NP_001156614.1| glutathione peroxidase 6 [Bos taurus]. 345 8e-95
Alignment gi|NP_001020506.2| epididymal secretory glutathione peroxidase ... 317 2e-86
Alignment gi|NP_776501.1| glutathione peroxidase 1 [Bos taurus]. 164 2e-40
Alignment gi|NP_001156611.1| glutathione peroxidase 2 [Bos taurus]. 149 9e-36
Alignment gi|NP_777195.1| phospholipid hydroperoxide glutathione peroxida... 85 2e-16
Alignment gi|NP_001039553.1| probable glutathione peroxidase 8 [Bos tauru... 84 4e-16
Alignment gi|NP_001094583.1| glutathione peroxidase 7 precursor [Bos taur... 82 1e-15
>ref|NP_776502.1| glutathione peroxidase 3 precursor [Bos taurus].
Length = 226
Score = 429 bits (1102), Expect = e-120
Identities = 199/224 (88%), Positives = 214/224 (95%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
MAR FRASCL+SLLLAGF+PPS+GQEKSKTDC+ GV GTIYEYGALTIDGEEYIPFK+YA
Sbjct: 1 MARLFRASCLLSLLLAGFIPPSQGQEKSKTDCHAGVGGTIYEYGALTIDGEEYIPFKQYA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GKY+LFVNVASY GLTGQYVELNALQEE EPFGLVILGFPCNQFGKQEPG+NSEIL+TL+
Sbjct: 61 GKYILFVNVASYUGLTGQYVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEILATLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPGGGF PNFQLFEKGDVNGEKEQKFYTFLKN+CPPTSELLGSP RLFWEPMKVHDIR
Sbjct: 121 YVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPDRLFWEPMKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 738
WNFEKFLVGPDG+P+MRWYHRTT+N+VK+DIL YMRRRA EAK
Sbjct: 181 WNFEKFLVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVWEAK 224
>ref|NP_001156614.1| glutathione peroxidase 6 [Bos taurus].
Length = 221
Score = 345 bits (884), Expect = 8e-95
Identities = 158/211 (74%), Positives = 183/211 (86%)
Frame = +1
Query: 85 ASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYAGKYVLF 264
ASCL L L G + Q++ K DCY+GV+GTIYEYGALT++GEEYI FK+Y GK+VLF
Sbjct: 7 ASCLFPLFLVGLAQLTPKQQQMKVDCYKGVTGTIYEYGALTLNGEEYIQFKQYVGKHVLF 66
Query: 265 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 444
VNVA+Y GLT QY ELNALQEE +PFG+V+LGFPCNQFGKQEP NSEIL L+YVRPGG
Sbjct: 67 VNVATYUGLTAQYPELNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLKYVRPGG 126
Query: 445 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNFEKF 624
GF+PNFQLFEKGDVNGEKEQK +TFLKNACPPTS+LLGS +LFWEPMKVHDIRWNFEKF
Sbjct: 127 GFVPNFQLFEKGDVNGEKEQKVFTFLKNACPPTSDLLGSSSQLFWEPMKVHDIRWNFEKF 186
Query: 625 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
LVGPDGVPVMRWYHR +++TVK D+L Y+++
Sbjct: 187 LVGPDGVPVMRWYHRASVSTVKSDMLEYLKQ 217
>ref|NP_001020506.2| epididymal secretory glutathione peroxidase [Bos taurus].
Length = 219
Score = 317 bits (811), Expect = 2e-86
Identities = 147/212 (69%), Positives = 176/212 (83%)
Frame = +1
Query: 82 RASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYAGKYVL 261
RASCL LAGF+ + EK DCY+ V GTIY+Y A T++G+E+I FK+YAGK+VL
Sbjct: 6 RASCLFLFFLAGFVQTNSNLEKM--DCYKDVKGTIYDYDAFTLNGKEHIQFKQYAGKHVL 63
Query: 262 FVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 441
FVNVA+Y GLT QY ELNALQEE +PFGLV+LGFPCNQFGKQEPG+NSEIL L+YVRPG
Sbjct: 64 FVNVATYCGLTAQYPELNALQEELKPFGLVVLGFPCNQFGKQEPGENSEILPGLKYVRPG 123
Query: 442 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNFEK 621
GG++PNFQLFEKGDVNGE EQK +TFLK +CP SE++GS + WEP+ V DIRWNFEK
Sbjct: 124 GGYVPNFQLFEKGDVNGETEQKVFTFLKQSCPHPSEIMGSIKHISWEPIMVRDIRWNFEK 183
Query: 622 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
FLVGPDG+PVMRW+HRT ++TVK DILAYM++
Sbjct: 184 FLVGPDGIPVMRWFHRTPVSTVKTDILAYMKQ 215
>ref|NP_776501.1| glutathione peroxidase 1 [Bos taurus].
Length = 205
Score = 164 bits (415), Expect = 2e-40
Identities = 87/187 (46%), Positives = 112/187 (59%), Gaps = 5/187 (2%)
Frame = +1
Query: 181 TIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVIL 357
T+Y + A + G E GK +L NVAS G T + Y ++N LQ P GLV+L
Sbjct: 18 TVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVL 77
Query: 358 GFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACP 537
GFPCNQFG QE N EIL+ L+YVRPGGGF PNF LFEK +VNGEK + FL+ P
Sbjct: 78 GFPCNQFGHQENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLP 137
Query: 538 PTSE----LLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILA 705
S+ L+ P + W P+ +D+ WNFEKFLVGPDGVPV R+ R ++ DI
Sbjct: 138 TPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIET 197
Query: 706 YMRRRAA 726
+ + A+
Sbjct: 198 LLSQGAS 204
>ref|NP_001156611.1| glutathione peroxidase 2 [Bos taurus].
Length = 190
Score = 149 bits (375), Expect = 9e-36
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Frame = +1
Query: 172 VSGTIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGL 348
++ + Y+ A+++DGE+ + F + G+ VL NVAS G T + + +LN LQ F P L
Sbjct: 4 IAKSFYDLSAISLDGEK-VDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRL 61
Query: 349 VILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKN 528
V+LGFPCNQFG QE N EIL++L+YVRPGGGF P F L +K DVNG+ E + +LK+
Sbjct: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGFQPTFTLVQKCDVNGQNEHPVFAYLKD 121
Query: 529 ACP----PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRT--TIN 681
P L+ P + W P++ D+ WNFEKFL+GP+G P R Y RT TIN
Sbjct: 122 KLPYPYDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRR-YSRTFQTIN 177
>ref|NP_777195.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
precursor [Bos taurus].
Length = 197
Score = 85.1 bits (209), Expect = 2e-16
Identities = 66/214 (30%), Positives = 95/214 (44%), Gaps = 1/214 (0%)
Frame = +1
Query: 73 RFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYAGK 252
R + + L L A L + + C R +++E+ A IDG + KY G
Sbjct: 8 RLLKPALLCGALAAPGLASTMCASRDDWRCAR----SMHEFSAKDIDGR-MVNLDKYRGH 62
Query: 253 YVLFVNVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRY 429
+ NVAS G T Y +L L + GL IL FPCNQFG+QEPG N+EI
Sbjct: 63 VCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEF--- 119
Query: 430 VRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRW 609
G+ F LF K VNG+ + ++K P +LG+ I+W
Sbjct: 120 ---AAGYNVKFDLFSKICVNGDDAHPLWKWMK-VQPKGRGMLGNA------------IKW 163
Query: 610 NFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 711
NF KFL+ +G V R+ ++ D+ Y+
Sbjct: 164 NFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPCYL 197
>ref|NP_001039553.1| probable glutathione peroxidase 8 [Bos taurus].
Length = 209
Score = 84.0 bits (206), Expect = 4e-16
Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 1/165 (0%)
Frame = +1
Query: 226 IPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDN 402
+ +K+ GK L VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP +
Sbjct: 60 VSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPS 119
Query: 403 SEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWE 582
E++S R F F +F K + G + + + FL ++ E
Sbjct: 120 KEVVSFAR-----NNFGVTFPIFHKIKILGSEAEPAFRFLVDSSKK-------------E 161
Query: 583 PMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
P RWNF K+LV P+G V W I ++ +I A +R+
Sbjct: 162 P------RWNFWKYLVNPEGQVVKTWRPEEPIEVIRPEIAALIRQ 200
>ref|NP_001094583.1| glutathione peroxidase 7 precursor [Bos taurus].
Length = 186
Score = 82.0 bits (201), Expect = 1e-15
Identities = 60/178 (33%), Positives = 83/178 (46%), Gaps = 1/178 (0%)
Frame = +1
Query: 187 YEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGF 363
Y++ A+ I G+ + +KY G L VNVAS G T Q Y L LQ + P +L F
Sbjct: 25 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 83
Query: 364 PCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPT 543
PCNQFG+QEP N EI S R + +F +F K V G + +L
Sbjct: 84 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL------- 131
Query: 544 SELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
+E G EP WNF K+LV PDG + W ++ ++ I A +R+
Sbjct: 132 TETSGK------EP------TWNFWKYLVAPDGKVIGAWDPTVSVEEIRPQITALVRK 177
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,644,545
Number of extensions: 2494049
Number of successful extensions: 13545
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 13153
Number of HSP's successfully gapped: 8
Length of query: 526
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 419
Effective length of database: 14,140,958
Effective search space: 5925061402
Effective search space used: 5925061402
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013095
(1578 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108627.1| glutathione peroxidase 3 [Sus scrofa]. 464 e-131
Alignment gi|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa]. 352 3e-97
Alignment gi|NP_999051.1| epididymal secretory glutathione peroxidase pre... 313 2e-85
Alignment gi|NP_999366.1| glutathione peroxidase 1 [Sus scrofa]. 161 1e-39
Alignment gi|NP_001108608.1| glutathione peroxidase 2 [Sus scrofa]. 149 4e-36
Alignment gi|NP_999572.1| phospholipid hydroperoxide glutathione peroxida... 84 3e-16
Alignment gi|XP_003134018.1| PREDICTED: probable glutathione peroxidase 8... 84 3e-16
Alignment gi|XP_003133997.2| PREDICTED: probable glutathione peroxidase 8... 72 9e-13
Alignment gi|XP_003361726.1| PREDICTED: glutathione peroxidase 7-like [Su... 59 8e-09
>ref|NP_001108627.1| glutathione peroxidase 3 [Sus scrofa].
Length = 226
Score = 464 bits (1194), Expect = e-131
Identities = 224/226 (99%), Positives = 224/226 (99%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA
Sbjct: 1 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GKYVLFVNVASY GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR
Sbjct: 61 GKYVLFVNVASYUGLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSP RLFWEPMKVHDIR
Sbjct: 121 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ 744
WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ
Sbjct: 181 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ 226
>ref|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa].
Length = 221
Score = 352 bits (903), Expect = 3e-97
Identities = 162/213 (76%), Positives = 187/213 (87%)
Frame = +1
Query: 79 FRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYAGKYV 258
F ASCL SL L GF ++K K DCY+GV+GTIYEYGALT++GEEYIPFK+YAGK+V
Sbjct: 5 FWASCLFSLCLVGFAQLIPKEQKMKMDCYKGVTGTIYEYGALTLNGEEYIPFKQYAGKHV 64
Query: 259 LFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRP 438
LFVNVA+Y GLT QY ELNALQEE +PFG+V+LGFPCNQFGKQEP NSEIL L+YVRP
Sbjct: 65 LFVNVATYUGLTAQYPELNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILLGLKYVRP 124
Query: 439 GGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNFE 618
GGGF+PNFQLFEKGDVNGEKEQK +TFLKN+CPPTS+LLGS +LFWEPMKVHDIRWNFE
Sbjct: 125 GGGFVPNFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWEPMKVHDIRWNFE 184
Query: 619 KFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
KFLVGPDGVPVMRWYHR +++TVK DI+ Y+++
Sbjct: 185 KFLVGPDGVPVMRWYHRASVSTVKSDIMEYLKQ 217
>ref|NP_999051.1| epididymal secretory glutathione peroxidase precursor [Sus scrofa].
Length = 219
Score = 313 bits (802), Expect = 2e-85
Identities = 146/208 (70%), Positives = 175/208 (84%)
Frame = +1
Query: 94 LISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYAGKYVLFVNV 273
L L +AGF+ + EK DCY+ V+GTIY+Y A T++G E+I FK+YAGK+VLFVNV
Sbjct: 10 LFPLFMAGFVQTNSNLEKM--DCYKDVTGTIYDYDAFTLNGNEHIQFKQYAGKHVLFVNV 67
Query: 274 ASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFI 453
A+Y GLT QY ELN LQEE +PFGLV+LGFPCNQFGKQEPG+NSEIL L+YVRPGGG++
Sbjct: 68 ATYCGLTAQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGGGYV 127
Query: 454 PNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVG 633
PNFQLFEKGDVNGEKEQK +TFLK++CP SEL+GS G + WEP++VHDIRWNFEKFLVG
Sbjct: 128 PNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKFLVG 187
Query: 634 PDGVPVMRWYHRTTINTVKLDILAYMRR 717
PDGVPVMRW H T I+TVK DILAY+++
Sbjct: 188 PDGVPVMRWVHETPISTVKSDILAYLKQ 215
>ref|NP_999366.1| glutathione peroxidase 1 [Sus scrofa].
Length = 206
Score = 161 bits (407), Expect = 1e-39
Identities = 86/182 (47%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Frame = +1
Query: 181 TIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVIL 357
++Y + A + G E I GK +L NVAS G T + Y ++N LQ P GLV+L
Sbjct: 18 SVYAFSARPLAGGEPISLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 77
Query: 358 GFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACP 537
GFPCNQFG QE N EIL+ L+YVRPGGGF PNF LFEK +VNG + FL+ A P
Sbjct: 78 GFPCNQFGHQENAKNGEILNCLKYVRPGGGFEPNFMLFEKCEVNGANAHPLFAFLREALP 137
Query: 538 PTSE----LLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILA 705
S+ L+ P + W P+ +DI WNFEKFLVGPDGVP+ R+ R ++ DI A
Sbjct: 138 TPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPLRRYSRRFLTIDIEPDIEA 197
Query: 706 YM 711
+
Sbjct: 198 LL 199
>ref|NP_001108608.1| glutathione peroxidase 2 [Sus scrofa].
Length = 190
Score = 149 bits (376), Expect = 4e-36
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Frame = +1
Query: 172 VSGTIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGL 348
++ + Y+ A+++DGE+ + F + G+ VL NVAS G T + + +LN LQ F P L
Sbjct: 4 IAKSFYDLSAISLDGEK-VDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRL 61
Query: 349 VILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKN 528
V+LGFPCNQFG QE N EIL++L+YVRPGGGF P F L +K DVNG+ E + +LK+
Sbjct: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGFQPTFTLIQKCDVNGQNEHPVFAYLKD 121
Query: 529 ACP----PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRT--TIN 681
P L+ P + W P++ D+ WNFEKFL+GP+G P R Y RT TIN
Sbjct: 122 KLPYPYDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRR-YSRTFPTIN 177
>ref|NP_999572.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
precursor [Sus scrofa].
Length = 197
Score = 83.6 bits (205), Expect = 3e-16
Identities = 69/219 (31%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Frame = +1
Query: 64 AMARFFRASCLISLLLAGFL--PPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFK 237
+ +R FR L LL G L P G + D +R + +++E+ A IDG +
Sbjct: 2 SFSRLFRL--LKPTLLCGTLAVPGLAGTMCASRDDWR-CARSMHEFSAKDIDGH-MVNLD 57
Query: 238 KYAGKYVLFVNVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEIL 414
KY G + NVAS G T Y +L L + GL IL FPCNQFG+QEPG ++EI
Sbjct: 58 KYRGYVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSDAEIK 117
Query: 415 STLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKV 594
G+ F +F K VNG+ + ++K P +LG+
Sbjct: 118 EF------AAGYNVKFDMFSKICVNGDDAHPLWKWMK-VQPKGRGMLGNA---------- 160
Query: 595 HDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 711
I+WNF KFL+ +G V R+ ++ D+ Y+
Sbjct: 161 --IKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDLPCYL 197
>ref|XP_003134018.1| PREDICTED: probable glutathione peroxidase 8-like [Sus scrofa].
Length = 209
Score = 83.6 bits (205), Expect = 3e-16
Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 1/165 (0%)
Frame = +1
Query: 226 IPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDN 402
+ +K+ GK L VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP +
Sbjct: 60 VSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPS 119
Query: 403 SEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWE 582
E+LS R + F +F K + G + + + FL ++ E
Sbjct: 120 KEVLSFAR-----NNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKK-------------E 161
Query: 583 PMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
P RWNF K+LV P+G V W I ++ +I A +R+
Sbjct: 162 P------RWNFWKYLVNPEGQVVKYWRPEEPIEVIRPEIAALIRQ 200
>ref|XP_003133997.2| PREDICTED: probable glutathione peroxidase 8-like [Sus scrofa].
Length = 209
Score = 72.0 bits (175), Expect = 9e-13
Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +1
Query: 259 LFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVR 435
L VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP + E+LS R
Sbjct: 71 LVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVLSFAR--- 127
Query: 436 PGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNF 615
+ F +F K + G + + + FL ++ EP RWNF
Sbjct: 128 --NNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKK-------------EP------RWNF 166
Query: 616 EKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
K+LV P+G V W I + +I +R+
Sbjct: 167 WKYLVNPEGQVVKYWRPEEPIEVNRPEIAVLIRQ 200
>ref|XP_003361726.1| PREDICTED: glutathione peroxidase 7-like [Sus scrofa].
Length = 242
Score = 58.9 bits (141), Expect = 8e-09
Identities = 49/144 (34%), Positives = 64/144 (44%)
Frame = +1
Query: 286 GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQ 465
G T Q+ ALQ+ G V L FPCNQFG+QEP N EI S R + +F
Sbjct: 117 GFTDQHYR--ALQQLQRDLGXV-LAFPCNQFGQQEPDSNKEIESFARRT-----YSVSFP 168
Query: 466 LFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGV 645
+F K V G A P L + G+ EP WNF K+LV PDG
Sbjct: 169 MFSKIAVTG----------TGAHPAFKYLTQTSGK---EP------TWNFWKYLVAPDGK 209
Query: 646 PVMRWYHRTTINTVKLDILAYMRR 717
V W ++ ++ I A +R+
Sbjct: 210 VVGAWDPTVSVEEIRPQITALVRK 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,996,213
Number of extensions: 1618657
Number of successful extensions: 8618
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8390
Number of HSP's successfully gapped: 9
Length of query: 526
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 422
Effective length of database: 8,754,644
Effective search space: 3694459768
Effective search space used: 3694459768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013095
(1578 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077398.1| glutathione peroxidase 3 isoform 1 [Mus musc... 422 e-118
Alignment gi|NP_032187.2| glutathione peroxidase 3 isoform 2 [Mus musculu... 414 e-115
Alignment gi|NP_663426.2| glutathione peroxidase 6 precursor [Mus musculu... 319 4e-87
Alignment gi|NP_034473.2| epididymal secretory glutathione peroxidase pre... 306 4e-83
Alignment gi|NP_032186.2| glutathione peroxidase 1 [Mus musculus]. 176 3e-44
Alignment gi|NP_109602.2| glutathione peroxidase 2 [Mus musculus]. 146 5e-35
Alignment gi|NP_032188.3| phospholipid hydroperoxide glutathione peroxida... 84 4e-16
Alignment gi|NP_001032830.2| phospholipid hydroperoxide glutathione perox... 82 1e-15
Alignment gi|NP_077160.1| glutathione peroxidase 7 precursor [Mus musculu... 75 1e-13
Alignment gi|NP_081403.1| probable glutathione peroxidase 8 [Mus musculus]. 69 1e-11
>ref|NP_001077398.1| glutathione peroxidase 3 isoform 1 [Mus musculus].
Length = 248
Score = 422 bits (1086), Expect = e-118
Identities = 195/228 (85%), Positives = 216/228 (94%)
Frame = +1
Query: 55 PQPAMARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPF 234
PQPAMAR RASCL+SLLLAGF+PP RGQEKSKTDC+ G+SGTIYEYGALTIDGEEYIPF
Sbjct: 19 PQPAMARILRASCLLSLLLAGFVPPGRGQEKSKTDCHGGMSGTIYEYGALTIDGEEYIPF 78
Query: 235 KKYAGKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEIL 414
K+YAGKY+LFVNVASY GLT QY+ELNALQEE PFGLVILGFP NQFGKQEPG+NSEIL
Sbjct: 79 KQYAGKYILFVNVASYUGLTDQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEIL 138
Query: 415 STLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKV 594
+L+YVRPGGGF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPT+ELLGSPGRLFWEPMK+
Sbjct: 139 PSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKI 198
Query: 595 HDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 738
HDIRWNFEKFLVGPDG+PVMRWYHRTT++ VK+DIL+YMRR+AAL A+
Sbjct: 199 HDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYMRRQAALSAR 246
>ref|NP_032187.2| glutathione peroxidase 3 isoform 2 [Mus musculus].
Length = 226
Score = 414 bits (1063), Expect = e-115
Identities = 191/224 (85%), Positives = 212/224 (94%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
MAR RASCL+SLLLAGF+PP RGQEKSKTDC+ G+SGTIYEYGALTIDGEEYIPFK+YA
Sbjct: 1 MARILRASCLLSLLLAGFVPPGRGQEKSKTDCHGGMSGTIYEYGALTIDGEEYIPFKQYA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GKY+LFVNVASY GLT QY+ELNALQEE PFGLVILGFP NQFGKQEPG+NSEIL +L+
Sbjct: 61 GKYILFVNVASYUGLTDQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPGGGF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPT+ELLGSPGRLFWEPMK+HDIR
Sbjct: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 738
WNFEKFLVGPDG+PVMRWYHRTT++ VK+DIL+YMRR+AAL A+
Sbjct: 181 WNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYMRRQAALSAR 224
>ref|NP_663426.2| glutathione peroxidase 6 precursor [Mus musculus].
Length = 221
Score = 319 bits (817), Expect = 4e-87
Identities = 144/217 (66%), Positives = 175/217 (80%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
MA+ SCL SL +A + +KSK DC +GV+GT+YEYGA TIDG E++ F++YA
Sbjct: 1 MAQKLWGSCLFSLFMAALAQETLNPQKSKVDCNKGVTGTVYEYGANTIDGGEFVNFQQYA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GK++LFVNVAS+ GLT Y ELN LQEE +PF + +LGFPCNQFGKQEPG NSEIL L+
Sbjct: 61 GKHILFVNVASFCGLTATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPGGG++PNFQLFEKGDVNG+ EQK ++FLKN+CPPTSEL GSP LFW+PMKVHDIR
Sbjct: 121 YVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
WNFEKFLVGPDGVPVMRW+H T + V+ DI+ Y+ +
Sbjct: 181 WNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQ 217
>ref|NP_034473.2| epididymal secretory glutathione peroxidase precursor [Mus
musculus].
Length = 221
Score = 306 bits (783), Expect = 4e-83
Identities = 143/215 (66%), Positives = 172/215 (80%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
M R L+ LLLA ++ + EK K DCY+ V GTIY+Y AL+++G+E+IPFK+YA
Sbjct: 1 MVTELRVFYLVPLLLASYVQTTPRPEKMKMDCYKDVKGTIYDYEALSLNGKEHIPFKQYA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GK+VLFVNVA+Y GLT QY ELNALQE+ +PFGLVILGFPCNQFGKQEPGDN EIL L+
Sbjct: 61 GKHVLFVNVATYCGLTIQYPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPG GF+PNFQLF KGDVNGE EQK +TFLK +CP SE + FWEP+KVHDIR
Sbjct: 121 YVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTFWEPIKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 711
WNFEKFLVGPDG+PVMRW+H+ ++TVK DI+AY+
Sbjct: 181 WNFEKFLVGPDGIPVMRWFHQAPVSTVKSDIMAYL 215
>ref|NP_032186.2| glutathione peroxidase 1 [Mus musculus].
Length = 201
Score = 176 bits (447), Expect = 3e-44
Identities = 92/178 (51%), Positives = 114/178 (64%), Gaps = 5/178 (2%)
Frame = +1
Query: 181 TIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLT-GQYVELNALQEEFEPFGLVIL 357
T+Y + A + G E + GK +L NVAS G T Y E+N LQ+ P GLV+L
Sbjct: 13 TVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVL 72
Query: 358 GFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACP 537
GFPCNQFG QE G N EIL++L+YVRPGGGF PNF LFEK +VNGEK +TFL+NA P
Sbjct: 73 GFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALP 132
Query: 538 PTSE----LLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDI 699
S+ L+ P + W P+ +DI WNFEKFLVGPDGVPV R+ R ++ DI
Sbjct: 133 TPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDI 190
>ref|NP_109602.2| glutathione peroxidase 2 [Mus musculus].
Length = 190
Score = 146 bits (368), Expect = 5e-35
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 5/181 (2%)
Frame = +1
Query: 172 VSGTIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGL 348
++ + Y+ A+ +DGE+ I F + G+ VL NVAS G T + Y +LN LQ F P L
Sbjct: 4 IAKSFYDLSAVGLDGEK-IDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRF-PRRL 61
Query: 349 VILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKN 528
V+LGFPCNQFG QE N EIL++L+YVRPGGG+ P F L +K DVNG+ E + +LK+
Sbjct: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKD 121
Query: 529 ACP----PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLD 696
P L+ P + W P++ D+ WNFEKFL+GP+G P R+ ++ D
Sbjct: 122 KLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPD 181
Query: 697 I 699
I
Sbjct: 182 I 182
>ref|NP_032188.3| phospholipid hydroperoxide glutathione peroxidase, nuclear isoform
2 precursor [Mus musculus].
Length = 197
Score = 83.6 bits (205), Expect = 4e-16
Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 1/216 (0%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
++R + + L L A L + + C R +++E+ A IDG + KY
Sbjct: 6 LSRLLKPALLCGALAAPGLAGTMCASRDDWRCAR----SMHEFSAKDIDGH-MVCLDKYR 60
Query: 247 GKYVLFVNVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTL 423
G + NVAS G T Y +L L + GL IL FPCNQFG+QEPG N EI
Sbjct: 61 GFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEF- 119
Query: 424 RYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDI 603
G+ F ++ K VNG+ + ++K P +LG+ I
Sbjct: 120 -----AAGYNVKFDMYSKICVNGDDAHPLWKWMK-VQPKGRGMLGNA------------I 161
Query: 604 RWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 711
+WNF KFL+ +G V R+ ++ D+ Y+
Sbjct: 162 KWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDLPCYL 197
>ref|NP_001032830.2| phospholipid hydroperoxide glutathione peroxidase, nuclear isoform
1 precursor [Mus musculus].
Length = 253
Score = 82.0 bits (201), Expect = 1e-15
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 1/178 (0%)
Frame = +1
Query: 181 TIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTG-QYVELNALQEEFEPFGLVIL 357
+++E+ A IDG + KY G + NVAS G T Y +L L + GL IL
Sbjct: 96 SMHEFSAKDIDGH-MVCLDKYRGFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRIL 154
Query: 358 GFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACP 537
FPCNQFG+QEPG N EI G+ F ++ K VNG+ + ++K P
Sbjct: 155 AFPCNQFGRQEPGSNQEIKEF------AAGYNVKFDMYSKICVNGDDAHPLWKWMK-VQP 207
Query: 538 PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 711
+LG+ I+WNF KFL+ +G V R+ ++ D+ Y+
Sbjct: 208 KGRGMLGNA------------IKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDLPCYL 253
>ref|NP_077160.1| glutathione peroxidase 7 precursor [Mus musculus].
Length = 186
Score = 75.5 bits (184), Expect = 1e-13
Identities = 59/169 (34%), Positives = 77/169 (45%), Gaps = 1/169 (0%)
Frame = +1
Query: 187 YEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGF 363
Y++ A+ I G+ + +KY G L VNVAS G T Q Y L LQ + P +L F
Sbjct: 25 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAF 83
Query: 364 PCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPT 543
PCNQFG+QEP N EI + R + +F +F K V G A P
Sbjct: 84 PCNQFGQQEPDTNREIENFARRT-----YSVSFPMFSKIAVTG----------TGAHPAF 128
Query: 544 SELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVK 690
L + G+ EP WNF K+LV PDG V W + +K
Sbjct: 129 KYLTQTSGK---EP------TWNFWKYLVDPDGKVVGAWDPTVPVAEIK 168
>ref|NP_081403.1| probable glutathione peroxidase 8 [Mus musculus].
Length = 209
Score = 68.6 bits (166), Expect = 1e-11
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Frame = +1
Query: 226 IPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDN 402
+ +K+ GK L VNVAS T + Y L L +EF P+ +L FPCNQFG+ EP +
Sbjct: 60 VSLEKFKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSS 119
Query: 403 SEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWE 582
E+ S R + F +F K + G + + + F+ ++ E
Sbjct: 120 KEVESFARQ-----NYGVTFPIFHKIKILGPEAEPAFRFIVDSSKK-------------E 161
Query: 583 PMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVK 690
P RWNF K+LV P+G V W + ++
Sbjct: 162 P------RWNFWKYLVNPEGQVVKFWRPEEPLEAIR 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,103,971
Number of extensions: 2053714
Number of successful extensions: 10211
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9823
Number of HSP's successfully gapped: 10
Length of query: 526
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 420
Effective length of database: 12,433,743
Effective search space: 5222172060
Effective search space used: 5222172060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013095
(1578 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002075.2| glutathione peroxidase 3 precursor [Homo sapien... 409 e-114
Alignment gi|NP_874360.1| glutathione peroxidase 6 precursor [Homo sapien... 325 9e-89
Alignment gi|NP_001500.1| epididymal secretory glutathione peroxidase iso... 307 2e-83
Alignment gi|NP_000572.2| glutathione peroxidase 1 isoform 1 [Homo sapien... 160 2e-39
Alignment gi|NP_002074.2| glutathione peroxidase 2 [Homo sapiens]. 146 5e-35
Alignment gi|NP_002076.2| phospholipid hydroperoxide glutathione peroxida... 84 5e-16
Alignment gi|NP_003987.2| epididymal secretory glutathione peroxidase iso... 83 6e-16
Alignment gi|NP_056511.2| glutathione peroxidase 7 precursor [Homo sapien... 83 6e-16
Alignment gi|NP_001034937.1| phospholipid hydroperoxide glutathione perox... 82 1e-15
Alignment gi|NP_001008398.2| probable glutathione peroxidase 8 [Homo sapi... 79 2e-14
>ref|NP_002075.2| glutathione peroxidase 3 precursor [Homo sapiens].
Length = 226
Score = 409 bits (1051), Expect = e-114
Identities = 190/226 (84%), Positives = 211/226 (93%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
MAR +ASCL+SLLLAGF+ SRGQEKSK DC+ G+SGTIYEYGALTIDGEEYIPFK+YA
Sbjct: 1 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GKYVLFVNVASY GLTGQY+ELNALQEE PFGLVILGFPCNQFGKQEPG+NSEIL TL+
Sbjct: 61 GKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPGGGF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPTSELLG+ RLFWEPMKVHDIR
Sbjct: 121 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ 744
WNFEKFLVGPDG+P+MRW+HRTT++ VK+DIL+YMRR+AAL KR+
Sbjct: 181 WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK 226
>ref|NP_874360.1| glutathione peroxidase 6 precursor [Homo sapiens].
Length = 221
Score = 325 bits (832), Expect = 9e-89
Identities = 149/217 (68%), Positives = 180/217 (82%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
M + F+ASCL+ L GF + + K DC +GV+GTIYEYGALT++GEEYI FK++A
Sbjct: 1 MFQQFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFA 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GK+VLFVNVA+Y GL QY ELNALQEE + FG+++L FPCNQFGKQEPG NSEIL L+
Sbjct: 61 GKHVLFVNVAAYUGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YV PG GF+P+FQLFEKGDVNGEKEQK +TFLKN+CPPTS+LLGS +LFWEPMKVHDIR
Sbjct: 121 YVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
WNFEKFLVGPDGVPVM W+H+ ++TVK DIL Y+++
Sbjct: 181 WNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
>ref|NP_001500.1| epididymal secretory glutathione peroxidase isoform 1 precursor
[Homo sapiens].
Length = 221
Score = 307 bits (786), Expect = 2e-83
Identities = 141/217 (64%), Positives = 176/217 (81%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
M R L+ LLLA F+ S QEK K DC++ GTIY+Y A+ ++ EY+ FK+Y
Sbjct: 1 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLR 426
GK++LFVNVA+Y GLT QY ELNALQEE +P+GLV+LGFPCNQFGKQEPGDN EIL L+
Sbjct: 61 GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK 120
Query: 427 YVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDIR 606
YVRPGGGF+P+FQLFEKGDVNGEKEQK ++FLK++CP SE+LG+ + W+P+KVHDIR
Sbjct: 121 YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR 180
Query: 607 WNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
WNFEKFLVGPDG+PVMRW HR T+++VK DILAY+++
Sbjct: 181 WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQ 217
>ref|NP_000572.2| glutathione peroxidase 1 isoform 1 [Homo sapiens].
Length = 203
Score = 160 bits (406), Expect = 2e-39
Identities = 84/182 (46%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
Frame = +1
Query: 181 TIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVIL 357
++Y + A + G E + GK +L NVAS G T + Y ++N LQ P GLV+L
Sbjct: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74
Query: 358 GFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACP 537
GFPCNQFG QE N EIL++L+YVRPGGGF PNF LFEK +VNG + FL+ A P
Sbjct: 75 GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 134
Query: 538 PTSE----LLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILA 705
S+ L+ P + W P+ +D+ WNFEKFLVGPDGVP+ R+ R ++ DI A
Sbjct: 135 APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 194
Query: 706 YM 711
+
Sbjct: 195 LL 196
>ref|NP_002074.2| glutathione peroxidase 2 [Homo sapiens].
Length = 190
Score = 146 bits (369), Expect = 5e-35
Identities = 80/177 (45%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
Frame = +1
Query: 172 VSGTIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGL 348
++ + Y+ A+++DGE+ + F + G+ VL NVAS G T + + +LN LQ F P L
Sbjct: 4 IAKSFYDLSAISLDGEK-VDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PRRL 61
Query: 349 VILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKN 528
V+LGFPCNQFG QE N EIL++L+YVRPGGG+ P F L +K +VNG+ E + +LK+
Sbjct: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKD 121
Query: 529 ACP----PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRT--TIN 681
P L+ P + W P++ D+ WNFEKFL+GP+G P R Y RT TIN
Sbjct: 122 KLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRR-YSRTFPTIN 177
>ref|NP_002076.2| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform A precursor [Homo sapiens].
Length = 197
Score = 83.6 bits (205), Expect = 5e-16
Identities = 64/199 (32%), Positives = 89/199 (44%), Gaps = 1/199 (0%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
+ R + + L L A L + + C R +++E+ A IDG + KY
Sbjct: 6 LCRLLKPALLCGALAAPGLAGTMCASRDDWRCAR----SMHEFSAKDIDGH-MVNLDKYR 60
Query: 247 GKYVLFVNVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTL 423
G + NVAS G T Y +L L + GL IL FPCNQFGKQEPG N EI
Sbjct: 61 GFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF- 119
Query: 424 RYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWEPMKVHDI 603
G+ F +F K VNG+ + ++K P +LG+ I
Sbjct: 120 -----AAGYNVKFDMFSKICVNGDDAHPLWKWMK-IQPKGKGILGNA------------I 161
Query: 604 RWNFEKFLVGPDGVPVMRW 660
+WNF KFL+ +G V R+
Sbjct: 162 KWNFTKFLIDKNGCVVKRY 180
>ref|NP_003987.2| epididymal secretory glutathione peroxidase isoform 2 precursor
[Homo sapiens].
Length = 100
Score = 83.2 bits (204), Expect = 6e-16
Identities = 41/88 (46%), Positives = 57/88 (64%)
Frame = +1
Query: 67 MARFFRASCLISLLLAGFLPPSRGQEKSKTDCYRGVSGTIYEYGALTIDGEEYIPFKKYA 246
M R L+ LLLA F+ S QEK K DC++ GTIY+Y A+ ++ EY+ FK+Y
Sbjct: 1 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV 60
Query: 247 GKYVLFVNVASY*GLTGQYVELNALQEE 330
GK++LFVNVA+Y GLT QY ++ E+
Sbjct: 61 GKHILFVNVATYCGLTAQYPGMSVQGED 88
>ref|NP_056511.2| glutathione peroxidase 7 precursor [Homo sapiens].
Length = 187
Score = 83.2 bits (204), Expect = 6e-16
Identities = 64/183 (34%), Positives = 85/183 (46%), Gaps = 1/183 (0%)
Frame = +1
Query: 187 YEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGF 363
Y++ A+ I G+ + +KY G L VNVAS G T Q Y L LQ + P +L F
Sbjct: 26 YDFKAVNIRGK-LVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAF 84
Query: 364 PCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPT 543
PCNQFG+QEP N EI S R + +F +F K V G A P
Sbjct: 85 PCNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTG----------TGAHPAF 129
Query: 544 SELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRA 723
L + G+ EP WNF K+LV PDG V W ++ V+ I A +R+
Sbjct: 130 KYLAQTSGK---EP------TWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLI 180
Query: 724 ALE 732
L+
Sbjct: 181 LLK 183
>ref|NP_001034937.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform C precursor [Homo sapiens].
Length = 234
Score = 82.4 bits (202), Expect = 1e-15
Identities = 57/161 (35%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
Frame = +1
Query: 181 TIYEYGALTIDGEEYIPFKKYAGKYVLFVNVASY*GLTG-QYVELNALQEEFEPFGLVIL 357
+++E+ A IDG + KY G + NVAS G T Y +L L + GL IL
Sbjct: 77 SMHEFSAKDIDGH-MVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 135
Query: 358 GFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACP 537
FPCNQFGKQEPG N EI G+ F +F K VNG+ + ++K P
Sbjct: 136 AFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMK-IQP 188
Query: 538 PTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRW 660
+LG+ I+WNF KFL+ +G V R+
Sbjct: 189 KGKGILGNA------------IKWNFTKFLIDKNGCVVKRY 217
>ref|NP_001008398.2| probable glutathione peroxidase 8 [Homo sapiens].
Length = 209
Score = 78.6 bits (192), Expect = 2e-14
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 1/165 (0%)
Frame = +1
Query: 226 IPFKKYAGKYVLFVNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDN 402
+ +KY GK L VNVAS LT + Y+ L L +EF P +L FPCNQFG+ EP +
Sbjct: 60 VSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPS 119
Query: 403 SEILSTLRYVRPGGGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPGRLFWE 582
E+ S + R G F +F K + G + + + FL ++ E
Sbjct: 120 KEVES---FARKNYGV--TFPIFHKIKILGSEGEPAFRFLVDSSKK-------------E 161
Query: 583 PMKVHDIRWNFEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 717
P RWNF K+LV P+G V W I ++ DI A +R+
Sbjct: 162 P------RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,039,040
Number of extensions: 2496416
Number of successful extensions: 12787
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 12366
Number of HSP's successfully gapped: 12
Length of query: 526
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 419
Effective length of database: 14,770,016
Effective search space: 6188636704
Effective search space used: 6188636704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013095
(1578 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1352 0.0
Sscrofa_Chr07 135 8e-29
Sscrofa_Chr13 60 4e-06
>Sscrofa_Chr16
|| Length = 86898991
Score = 1352 bits (682), Expect = 0.0
Identities = 712/722 (98%)
Strand = Plus / Plus
Query: 524 agaacgcctgtcctcctacttcggagctcctgggctcaccgggccgcctattctgggaac 583
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 78289857 agaacgcctgtcctcctacttcggagcttctgggctcaccgagccgcctattctgggaac 78289916
Query: 584 ccatgaaggtccatgacatccgctggaactttgagaagttcctggtggggcccgacggtg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289917 ccatgaaggtccatgacatccgctggaactttgagaagttcctggtggggcccgacggtg 78289976
Query: 644 tgcccgtcatgcgctggtaccaccgcaccaccatcaacactgtcaagctggacatcctgg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289977 tgcccgtcatgcgctggtaccaccgcaccaccatcaacactgtcaagctggacatcctgg 78290036
Query: 704 cctacatgcggcggcgggcagccctggaggccaagcggcagtaatggaggcccaccccac 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290037 cctacatgcggcggcgggcagccctggaggccaagcggcagtaatggaggcccaccccac 78290096
Query: 764 cctgtgcccaccccccaggggctggggaggactctgttcaggaaggaatccatttctaca 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290097 cctgtgcccaccccccaggggctggggaggactctgttcaggaaggaatccatttctaca 78290156
Query: 824 accacgccgctgtcccctgctagacccctcactaggacacaagggcccagcccgacagga 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290157 accacgccgctgtcccctgctagacccctcactaggacacaagggcccagcccgacagga 78290216
Query: 884 aggtgtgcacacaactgtgtctgtactgctgtgcttgtgagcgtgtgcatgcgtgcctac 943
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 78290217 aggtgtgcacacaactgtgtctgtactgctgtgcttgtgagcatgtgcatgcgtgcctac 78290276
Query: 944 aggtgtgtgtgatcacaggagtgcactgccacttacaggcgtggcgacctgcaggaatcc 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290277 aggtgtgtgtgatcacaggagtgcactgccacttacaggcgtggcgacctgcaggaatcc 78290336
Query: 1004 ccaggcctgtaagtgtgcccacagctgtgtgccaggggtggggtgccggagcgacactcc 1063
||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 78290337 ccaggcctgtaagtgtgcccacagctgtgtgccgggggcagggtgccggagcgtcactcc 78290396
Query: 1064 cctctcgctctggttctctgctccaatgatcacaactcactttcagtgagcccaaaggaa 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290397 cctctcgctctggttctctgctccaatgatcacaactcactttcagtgagcccaaaggaa 78290456
Query: 1124 aaaaccagttctagattcagttggtctgctctaacctggcctttagcccttggggccagc 1183
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 78290457 aaaaccagttctagattcaattggtctgctctaacctggactttagcccttggggccagc 78290516
Query: 1184 atctcccactgcctccagacaccaccagtgaagtgcccagaagcttctgggtctgccaca 1243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290517 atctcccactgtctccagacaccaccagtgaagtgcccagaagcttctgggtctgccaca 78290576
Query: 1244 ca 1245
||
Sbjct: 78290577 ca 78290578
Score = 430 bits (217), Expect = e-117
Identities = 252/261 (96%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 1312 acagtgttccctgagagcagccaaggcagatgtgagagcaaaggccacgatcccagtgtc 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290645 acagtgttccctgagagcagccaaggcagatgtgagagcaaaggccacgatcccagtgtc 78290704
Query: 1372 aggggtggcatcttcatgaaggaagggcccgaagccctcatgggcggaccccccttgagc 1431
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 78290705 aggggtggcatcttcatgaaggaggggcccgaagccctcatgggcggaccccccttgagc 78290764
Query: 1432 ctgtctgaaggtctggcccttcgtgcattcaggcccaggccccccagcagagatgccacc 1491
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 78290765 ctgtctgaaggtctggcccttcgtgcattcaggccaaggcccccaggcagagatgccacc 78290824
Query: 1492 actgctttctcgggggatgtgtcctctcccctcaccctgacctgctggcatttagactca 1551
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 78290825 actgctccttcgggggatgtgtcctctcccctcaccctgacctgctggca-ttagactca 78290883
Query: 1552 -cccgtgtacctagtaaaggc 1571
||||||||||||||||||||
Sbjct: 78290884 ccccgtgtacctagtaaaggc 78290904
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 152 agacggactgctatcgtggtgtgagtggcaccatctatgagtatggagccctcaccatcg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78287135 agacggactgctatcgtggtgtgagtggcaccatctatgagtatggagccctcaccatcg 78287194
Query: 212 acggggaggagtacatcccttttaagaagtacgctggcaaatacgtcctctttgtcaacg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78287195 acggggaggagtacatcccttttaagaagtacgctggcaaatacgtcctctttgtcaacg 78287254
Query: 272 tggccagctactgaggcctgacgggccagtacgttg 307
||||||||||||||||||||||||||||||||||||
Sbjct: 78287255 tggccagctactgaggcctgacgggccagtacgttg 78287290
Score = 301 bits (152), Expect = 6e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 2 agacggactgtgcccgggagtcagacagcgtctcaggagagctcgagacgcacccccagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78282294 agacggactgtgcccgggagtcagacagcgtctcaggagagctcgagacgcacccccagc 78282353
Query: 62 cagccatggcccggttctttcgggcatcctgccttatctccctgctcctggccggcttcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78282354 cagccatggcccggttctttcgggcatcctgccttatctccctgctcctggccggcttcc 78282413
Query: 122 tcccgccgagccggggacaggagaagtcgaag 153
||||||||||||||||||||||||||||||||
Sbjct: 78282414 tcccgccgagccggggacaggagaagtcgaag 78282445
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 307 gaactgaatgcactgcaggaagagtttgaaccctttggcctcgtcattctgggcttcccc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78288787 gaactgaatgcactgcaggaagagtttgaaccctttggcctcgtcattctgggcttcccc 78288846
Query: 367 tgcaaccaatttggaaaacaggaaccgggagacaactcggagattctgtccactctcagg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78288847 tgcaaccaatttggaaaacaggaaccgggagacaactcggagattctgtccactctcagg 78288906
Query: 427 t 427
|
Sbjct: 78288907 t 78288907
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 423 caggtatgtccgaccaggtgggggcttcatccccaatttccagctctttgagaaagggga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289350 caggtatgtccgaccaggtgggggcttcatccccaatttccagctctttgagaaagggga 78289409
Query: 483 cgtgaacggggagaaggagcagaagttctacacgttcctgaag 525
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289410 cgtgaacggggagaaggagcagaagttctacacgttcctgaag 78289452
>Sscrofa_Chr07
|| Length = 134764511
Score = 135 bits (68), Expect = 8e-29
Identities = 104/116 (89%)
Strand = Plus / Minus
Query: 178 ggcaccatctatgagtatggagccctcaccatcgacggggaggagtacatcccttttaag 237
|||||||||||||||||||||||||||||| || | || |||||||||||||| || |||
Sbjct: 24208347 ggcaccatctatgagtatggagccctcaccctcaatggcgaggagtacatcccgttcaag 24208288
Query: 238 aagtacgctggcaaatacgtcctctttgtcaacgtggccagctactgaggcctgac 293
||||||| |||||| |||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 24208287 cagtacgcaggcaaacacgtcctctttgtcaacgtggccacctattgaggcttgac 24208232
Score = 125 bits (63), Expect = 8e-26
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 574 ttctgggaacccatgaaggtccatgacatccgctggaactttgagaagttcctggtgggg 633
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24200878 ttctgggagcccatgaaggtccatgacattcgctggaactttgagaagttcctggtgggg 24200819
Query: 634 cccgacggtgtgcccgtcatgcgctggtaccaccg 668
|| || || || || || |||||||||||||||||
Sbjct: 24200818 cctgatggagtccctgttatgcgctggtaccaccg 24200784
Score = 79.8 bits (40), Expect = 4e-12
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 577 tgggaacccatgaaggtccatgacatccgctggaactttgagaagttcctggtggggccc 636
||||||||||| | |||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 24243919 tgggaacccatcagggtccacgacatccgctggaattttgaaaagttcctggtagggcct 24243978
Query: 637 gacggtgtgcccgtcatgcgctgg 660
|| || || || ||||||||||||
Sbjct: 24243979 gatggagtccctgtcatgcgctgg 24244002
Score = 60.0 bits (30), Expect = 4e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 356 tgggcttcccctgcaaccaatttggaaaacaggaaccgggagacaactcggagattct 413
||||||| ||||||||||||||||||||||| ||||| | | | ||||| ||||||||
Sbjct: 24202639 tgggctttccctgcaaccaatttggaaaacaagaaccagcaaagaactcagagattct 24202582
>Sscrofa_Chr13
|| Length = 218635234
Score = 60.0 bits (30), Expect = 4e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 607 tggaactttgagaagttcctggtggggcccgacggtgtgccc 648
|||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 35147581 tggaacttcgagaagttcctggtgggcccagacggtgtgccc 35147540
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,565,159
Number of extensions: 307
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 11
Length of query: 1578
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1556
Effective length of database: 2,808,408,574
Effective search space: 4369883741144
Effective search space used: 4369883741144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)