Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013096
(1101 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776502.1| glutathione peroxidase 3 precursor [Bos taurus]. 308 4e-84
Alignment gi|NP_001156614.1| glutathione peroxidase 6 [Bos taurus]. 269 4e-72
Alignment gi|NP_001020506.2| epididymal secretory glutathione peroxidase ... 251 1e-66
Alignment gi|NP_776501.1| glutathione peroxidase 1 [Bos taurus]. 152 5e-37
Alignment gi|NP_001156611.1| glutathione peroxidase 2 [Bos taurus]. 131 9e-31
Alignment gi|NP_001039553.1| probable glutathione peroxidase 8 [Bos tauru... 75 1e-13
Alignment gi|NP_777195.1| phospholipid hydroperoxide glutathione peroxida... 72 7e-13
Alignment gi|NP_001094583.1| glutathione peroxidase 7 precursor [Bos taur... 70 3e-12
>ref|NP_776502.1| glutathione peroxidase 3 precursor [Bos taurus].
Length = 226
Score = 308 bits (790), Expect = 4e-84
Identities = 142/158 (89%), Positives = 151/158 (95%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVASY GLTGQYVELNALQEE EPFGLVILGFPCNQFGKQEPG+NSEIL+TL+YVRPGG
Sbjct: 67 VNVASYUGLTGQYVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEILATLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF PNFQLFEKGDVNGEKEQKFYTFLKN+CPPTSELLGSP RLFWEPMKVHDIRWNFEKF
Sbjct: 127 GFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 474
LVGPDG+P+MRWYHRTT+N+VK+DIL YMRRRA EAK
Sbjct: 187 LVGPDGIPIMRWYHRTTVNSVKMDILTYMRRRAVWEAK 224
>ref|NP_001156614.1| glutathione peroxidase 6 [Bos taurus].
Length = 221
Score = 269 bits (687), Expect = 4e-72
Identities = 122/151 (80%), Positives = 138/151 (91%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GLT QY ELNALQEE +PFG+V+LGFPCNQFGKQEP NSEIL L+YVRPGG
Sbjct: 67 VNVATYUGLTAQYPELNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILMGLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+PNFQLFEKGDVNGEKEQK +TFLKNACPPTS+LLGS S+LFWEPMKVHDIRWNFEKF
Sbjct: 127 GFVPNFQLFEKGDVNGEKEQKVFTFLKNACPPTSDLLGSSSQLFWEPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDGVPVMRWYHR +++TVK D+L Y+++
Sbjct: 187 LVGPDGVPVMRWYHRASVSTVKSDMLEYLKQ 217
>ref|NP_001020506.2| epididymal secretory glutathione peroxidase [Bos taurus].
Length = 219
Score = 251 bits (640), Expect = 1e-66
Identities = 113/151 (74%), Positives = 132/151 (87%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GLT QY ELNALQEE +PFGLV+LGFPCNQFGKQEPG+NSEIL L+YVRPGG
Sbjct: 65 VNVATYCGLTAQYPELNALQEELKPFGLVVLGFPCNQFGKQEPGENSEILPGLKYVRPGG 124
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G++PNFQLFEKGDVNGE EQK +TFLK +CP SE++GS + WEP+ V DIRWNFEKF
Sbjct: 125 GYVPNFQLFEKGDVNGETEQKVFTFLKQSCPHPSEIMGSIKHISWEPIMVRDIRWNFEKF 184
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDG+PVMRW+HRT ++TVK DILAYM++
Sbjct: 185 LVGPDGIPVMRWFHRTPVSTVKTDILAYMKQ 215
>ref|NP_776501.1| glutathione peroxidase 1 [Bos taurus].
Length = 205
Score = 152 bits (384), Expect = 5e-37
Identities = 79/158 (50%), Positives = 100/158 (63%), Gaps = 5/158 (3%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + Y ++N LQ P GLV+LGFPCNQFG QE N EIL+ L+YVRPGG
Sbjct: 47 NVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNCLKYVRPGG 106
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSE----LLGSPSRLFWEPMKVHDIRWN 348
GF PNF LFEK +VNGEK + FL+ P S+ L+ P + W P+ +D+ WN
Sbjct: 107 GFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWN 166
Query: 349 FEKFLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAA 462
FEKFLVGPDGVPV R+ R ++ DI + + A+
Sbjct: 167 FEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLLSQGAS 204
>ref|NP_001156611.1| glutathione peroxidase 2 [Bos taurus].
Length = 190
Score = 131 bits (330), Expect = 9e-31
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 7/145 (4%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + + +LN LQ F P LV+LGFPCNQFG QE N EIL++L+YVRPGG
Sbjct: 35 NVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGG 93
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACP----PTSELLGSPSRLFWEPMKVHDIRWN 348
GF P F L +K DVNG+ E + +LK+ P L+ P + W P++ D+ WN
Sbjct: 94 GFQPTFTLVQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVSWN 153
Query: 349 FEKFLVGPDGVPVMRWYHRT--TIN 417
FEKFL+GP+G P R Y RT TIN
Sbjct: 154 FEKFLIGPEGEPFRR-YSRTFQTIN 177
>ref|NP_001039553.1| probable glutathione peroxidase 8 [Bos taurus].
Length = 209
Score = 75.1 bits (183), Expect = 1e-13
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP + E++S R
Sbjct: 73 VNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFAR----- 127
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
F F +F K + G + + + FL ++ EP RWNF K
Sbjct: 128 NNFGVTFPIFHKIKILGSEAEPAFRFLVDSSKK-------------EP------RWNFWK 168
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV P+G V W I ++ +I A +R+
Sbjct: 169 YLVNPEGQVVKTWRPEEPIEVIRPEIAALIRQ 200
>ref|NP_777195.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
precursor [Bos taurus].
Length = 197
Score = 72.4 bits (176), Expect = 7e-13
Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 4 NVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y +L L + GL IL FPCNQFG+QEPG N+EI
Sbjct: 68 NVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEF------AA 121
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G+ F LF K VNG+ + ++K P +LG+ I+WNF KF
Sbjct: 122 GYNVKFDLFSKICVNGDDAHPLWKWMK-VQPKGRGMLGNA------------IKWNFTKF 168
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYM 447
L+ +G V R+ ++ D+ Y+
Sbjct: 169 LIDKNGCVVKRYGPMEEPLVIEKDLPCYL 197
>ref|NP_001094583.1| glutathione peroxidase 7 precursor [Bos taurus].
Length = 186
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/152 (34%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS G T Q Y L LQ + P +L FPCNQFG+QEP N EI S R
Sbjct: 50 VNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRT--- 106
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ +F +F K V G + +L +E G EP WNF K
Sbjct: 107 --YSVSFPMFSKIAVTGTGAHPAFKYL-------TETSGK------EP------TWNFWK 145
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV PDG + W ++ ++ I A +R+
Sbjct: 146 YLVAPDGKVIGAWDPTVSVEEIRPQITALVRK 177
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,373,526
Number of extensions: 1632622
Number of successful extensions: 8355
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8266
Number of HSP's successfully gapped: 8
Length of query: 367
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,240,222
Effective search space: 3745178386
Effective search space used: 3745178386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013096
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013096
(1101 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157926.1| glutathione peroxidase 3 [Canis lupus famili... 303 1e-82
Alignment gi|XP_855017.1| PREDICTED: similar to Plasma glutathione peroxi... 281 8e-76
Alignment gi|XP_545450.2| PREDICTED: similar to glutathione peroxidase 6 ... 247 1e-65
Alignment gi|NP_001003213.1| epididymal secretory glutathione peroxidase ... 243 3e-64
Alignment gi|NP_001108591.1| glutathione peroxidase 1 [Canis lupus famili... 150 3e-36
Alignment gi|NP_001108607.1| glutathione peroxidase 2 [Canis lupus famili... 130 2e-30
Alignment gi|XP_535237.1| PREDICTED: similar to F26E4.12 isoform 1 [Canis... 74 3e-13
Alignment gi|XP_859275.1| PREDICTED: similar to F26E4.12 isoform 2 [Canis... 74 3e-13
Alignment gi|XP_532572.2| PREDICTED: similar to glutathione peroxidase 7 ... 68 2e-11
Alignment gi|XP_848225.1| PREDICTED: similar to F26E4.12 [Canis familiari... 64 2e-10
>ref|NP_001157926.1| glutathione peroxidase 3 [Canis lupus familiaris].
Length = 226
Score = 303 bits (777), Expect = 1e-82
Identities = 139/158 (87%), Positives = 151/158 (95%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVASY GLTGQY+ELNALQEE PFGLVILGFPCNQFGKQEPG+NSEIL +L+YVRPGG
Sbjct: 67 VNVASYUGLTGQYLELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPTSELLGSP RLFWEPMKVHDIRWNFEKF
Sbjct: 127 GFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 474
LVGPDG+P+MRWYHRTT++TVK+DILAYMRR+AAL K
Sbjct: 187 LVGPDGIPIMRWYHRTTVSTVKMDILAYMRRQAALAIK 224
>ref|XP_855017.1| PREDICTED: similar to Plasma glutathione peroxidase precursor
(GSHPx-P) [Canis familiaris].
Length = 147
Score = 281 bits (719), Expect = 8e-76
Identities = 127/145 (87%), Positives = 139/145 (95%)
Frame = +1
Query: 40 VELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGD 219
+ELNALQEE PFGLVILGFPCNQFGKQEPG+NSEIL +L+YVRPGGGF+PNFQLFEKGD
Sbjct: 1 MELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGD 60
Query: 220 VNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWY 399
VNGEKEQKFYTFLKN+CPPTSELLGSP RLFWEPMKVHDIRWNFEKFLVGPDG+P+MRWY
Sbjct: 61 VNGEKEQKFYTFLKNSCPPTSELLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWY 120
Query: 400 HRTTINTVKLDILAYMRRRAALEAK 474
HRTT++TVK+DILAYMRR+AAL K
Sbjct: 121 HRTTVSTVKMDILAYMRRQAALAIK 145
>ref|XP_545450.2| PREDICTED: similar to glutathione peroxidase 6 [Canis familiaris].
Length = 154
Score = 247 bits (631), Expect = 1e-65
Identities = 110/137 (80%), Positives = 128/137 (93%)
Frame = +1
Query: 43 ELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQLFEKGDV 222
ELNALQEE + FG+V+LGFPCNQFGKQEPG NSEILS L++VRPGGGF+PNFQLFEKGDV
Sbjct: 14 ELNALQEELKSFGVVVLGFPCNQFGKQEPGKNSEILSGLKHVRPGGGFVPNFQLFEKGDV 73
Query: 223 NGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWYH 402
NGEKEQK +TFLKN+CPPTS+LLGS ++LFWEPMKVHDIRWNFEKFLVGPDGVPVMRW+H
Sbjct: 74 NGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFH 133
Query: 403 RTTINTVKLDILAYMRR 453
+ ++TVK DILAY+++
Sbjct: 134 QAPVSTVKADILAYLKQ 150
>ref|NP_001003213.1| epididymal secretory glutathione peroxidase precursor [Canis lupus
familiaris].
Length = 221
Score = 243 bits (619), Expect = 3e-64
Identities = 111/151 (73%), Positives = 131/151 (86%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GLT QY ELN+LQEE +P GLV+LGFPCNQFGKQ PG+NSEIL L+YVRPG
Sbjct: 67 VNVATYCGLTAQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGR 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G++PNFQLFEKGDVNGEKEQK +TFLK +CP SE+LGS + W+P+KVHDIRWNFEKF
Sbjct: 127 GYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDGVPV+RW+HRT I+TVK DIL Y+++
Sbjct: 187 LVGPDGVPVLRWFHRTPISTVKEDILVYLKQ 217
>ref|NP_001108591.1| glutathione peroxidase 1 [Canis lupus familiaris].
Length = 205
Score = 150 bits (378), Expect = 3e-36
Identities = 77/153 (50%), Positives = 99/153 (64%), Gaps = 5/153 (3%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + Y ++N LQ P GLV+LGFPCNQFG QE N EIL++L+YVRPGG
Sbjct: 46 NVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGG 105
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACP----PTSELLGSPSRLFWEPMKVHDIRWN 348
GF PNF LFEK +VNG + + FL+ + P T+ L+ P + W P+ +D+ WN
Sbjct: 106 GFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPSDDTTALMTDPKFITWSPVCRNDVAWN 165
Query: 349 FEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 447
FEKFLVGPDGVPV R+ R ++ DI A +
Sbjct: 166 FEKFLVGPDGVPVRRYSRRFPTIDIEPDIEALL 198
>ref|NP_001108607.1| glutathione peroxidase 2 [Canis lupus familiaris].
Length = 190
Score = 130 bits (327), Expect = 2e-30
Identities = 74/146 (50%), Positives = 94/146 (64%), Gaps = 8/146 (5%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + + +LN LQ F P LV+LGFPCNQFG QE N EIL++L+YVRPGG
Sbjct: 35 NVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGG 93
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACP-----PTSELLGSPSRLFWEPMKVHDIRW 345
GF P F L +K +VNG+ E + +LK+ P P S L+ P + W P++ D+ W
Sbjct: 94 GFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPLS-LMTDPKFIIWSPVRRSDVAW 152
Query: 346 NFEKFLVGPDGVPVMRWYHRT--TIN 417
NFEKFL+GP+G P R Y RT TIN
Sbjct: 153 NFEKFLIGPEGEPFRR-YSRTFPTIN 177
>ref|XP_535237.1| PREDICTED: similar to F26E4.12 isoform 1 [Canis familiaris].
Length = 209
Score = 73.6 bits (179), Expect = 3e-13
Identities = 50/152 (32%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP + E++S R
Sbjct: 73 VNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFAR----- 127
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ F +F K + G + + FL ++ EP RWNF K
Sbjct: 128 NNYGATFPIFHKIKILGSEADPAFRFLVDSSKK-------------EP------RWNFWK 168
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV P+G V W I ++ +I A +R+
Sbjct: 169 YLVNPEGQVVKSWRPEEPIEVIRPEIAALVRQ 200
>ref|XP_859275.1| PREDICTED: similar to F26E4.12 isoform 2 [Canis familiaris].
Length = 158
Score = 73.6 bits (179), Expect = 3e-13
Identities = 50/152 (32%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP + E++S R
Sbjct: 22 VNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFAR----- 76
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ F +F K + G + + FL ++ EP RWNF K
Sbjct: 77 NNYGATFPIFHKIKILGSEADPAFRFLVDSSKK-------------EP------RWNFWK 117
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV P+G V W I ++ +I A +R+
Sbjct: 118 YLVNPEGQVVKSWRPEEPIEVIRPEIAALVRQ 149
>ref|XP_532572.2| PREDICTED: similar to glutathione peroxidase 7 [Canis familiaris].
Length = 222
Score = 67.8 bits (164), Expect = 2e-11
Identities = 50/152 (32%), Positives = 66/152 (43%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLT-GQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS G T G Y L LQ + P +L FPCNQFG+QEP + EI S R
Sbjct: 86 VNVASACGFTDGHYRSLQQLQRDLGPRHFTVLAFPCNQFGQQEPDGDREIESFARRT--- 142
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ +F +F K V G + +L EP WNF K
Sbjct: 143 --YGVSFPMFSKVAVTGTGAHPAFKYLTQTSGK-------------EP------TWNFWK 181
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV PDG V W ++ ++ I A +R+
Sbjct: 182 YLVAPDGKVVGAWDPTVSVEDIRPQITALVRK 213
>ref|XP_848225.1| PREDICTED: similar to F26E4.12 [Canis familiaris].
Length = 209
Score = 64.3 bits (155), Expect = 2e-10
Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS L + Y+ + L +EF PF +L FPCNQFG+ EP + E++S R
Sbjct: 73 VNVASDCQLRDRNYLAVQELHKEFGPFHFSVLAFPCNQFGESEPFPSKEVVSFAR----- 127
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ F +F K + G + + FL ++ EP RWNF K
Sbjct: 128 NNYGATFPIFHKIKILGSEADPAFRFLVDSSKK-------------EP------RWNFWK 168
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILA 441
+LV P+ V W I ++ +I A
Sbjct: 169 YLVNPEEQVVKSWRPEEPIEVIRPEIAA 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,379,304
Number of extensions: 1670645
Number of successful extensions: 8013
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7924
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 263
Effective length of database: 15,407,560
Effective search space: 4052188280
Effective search space used: 4052188280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013096
(1101 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108627.1| glutathione peroxidase 3 [Sus scrofa]. 332 2e-91
Alignment gi|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa]. 266 1e-71
Alignment gi|NP_999051.1| epididymal secretory glutathione peroxidase pre... 251 4e-67
Alignment gi|NP_999366.1| glutathione peroxidase 1 [Sus scrofa]. 149 2e-36
Alignment gi|NP_001108608.1| glutathione peroxidase 2 [Sus scrofa]. 132 4e-31
Alignment gi|XP_003134018.1| PREDICTED: probable glutathione peroxidase 8... 75 8e-14
Alignment gi|XP_003133997.2| PREDICTED: probable glutathione peroxidase 8... 71 1e-12
Alignment gi|NP_999572.1| phospholipid hydroperoxide glutathione peroxida... 70 2e-12
Alignment gi|XP_003361726.1| PREDICTED: glutathione peroxidase 7-like [Su... 58 1e-08
>ref|NP_001108627.1| glutathione peroxidase 3 [Sus scrofa].
Length = 226
Score = 332 bits (851), Expect = 2e-91
Identities = 159/160 (99%), Positives = 159/160 (99%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVASY GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG
Sbjct: 67 VNVASYUGLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF
Sbjct: 127 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ 480
LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ
Sbjct: 187 LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ 226
>ref|NP_001131079.1| glutathione peroxidase 6 [Sus scrofa].
Length = 221
Score = 266 bits (681), Expect = 1e-71
Identities = 120/151 (79%), Positives = 138/151 (91%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GLT QY ELNALQEE +PFG+V+LGFPCNQFGKQEP NSEIL L+YVRPGG
Sbjct: 67 VNVATYUGLTAQYPELNALQEELKPFGVVVLGFPCNQFGKQEPAKNSEILLGLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+PNFQLFEKGDVNGEKEQK +TFLKN+CPPTS+LLGS ++LFWEPMKVHDIRWNFEKF
Sbjct: 127 GFVPNFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDGVPVMRWYHR +++TVK DI+ Y+++
Sbjct: 187 LVGPDGVPVMRWYHRASVSTVKSDIMEYLKQ 217
>ref|NP_999051.1| epididymal secretory glutathione peroxidase precursor [Sus scrofa].
Length = 219
Score = 251 bits (642), Expect = 4e-67
Identities = 115/151 (76%), Positives = 133/151 (88%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GLT QY ELN LQEE +PFGLV+LGFPCNQFGKQEPG+NSEIL L+YVRPGG
Sbjct: 65 VNVATYCGLTAQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGG 124
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G++PNFQLFEKGDVNGEKEQK +TFLK++CP SEL+GS + WEP++VHDIRWNFEKF
Sbjct: 125 GYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKF 184
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDGVPVMRW H T I+TVK DILAY+++
Sbjct: 185 LVGPDGVPVMRWVHETPISTVKSDILAYLKQ 215
>ref|NP_999366.1| glutathione peroxidase 1 [Sus scrofa].
Length = 206
Score = 149 bits (377), Expect = 2e-36
Identities = 78/153 (50%), Positives = 97/153 (63%), Gaps = 5/153 (3%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + Y ++N LQ P GLV+LGFPCNQFG QE N EIL+ L+YVRPGG
Sbjct: 47 NVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNGEILNCLKYVRPGG 106
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSE----LLGSPSRLFWEPMKVHDIRWN 348
GF PNF LFEK +VNG + FL+ A P S+ L+ P + W P+ +DI WN
Sbjct: 107 GFEPNFMLFEKCEVNGANAHPLFAFLREALPTPSDDATALMTDPKFITWSPVCRNDIAWN 166
Query: 349 FEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 447
FEKFLVGPDGVP+ R+ R ++ DI A +
Sbjct: 167 FEKFLVGPDGVPLRRYSRRFLTIDIEPDIEALL 199
>ref|NP_001108608.1| glutathione peroxidase 2 [Sus scrofa].
Length = 190
Score = 132 bits (331), Expect = 4e-31
Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 7/145 (4%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + + +LN LQ F P LV+LGFPCNQFG QE N EIL++L+YVRPGG
Sbjct: 35 NVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGG 93
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACP----PTSELLGSPSRLFWEPMKVHDIRWN 348
GF P F L +K DVNG+ E + +LK+ P L+ P + W P++ D+ WN
Sbjct: 94 GFQPTFTLIQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVSWN 153
Query: 349 FEKFLVGPDGVPVMRWYHRT--TIN 417
FEKFL+GP+G P R Y RT TIN
Sbjct: 154 FEKFLIGPEGEPFRR-YSRTFPTIN 177
>ref|XP_003134018.1| PREDICTED: probable glutathione peroxidase 8-like [Sus scrofa].
Length = 209
Score = 74.7 bits (182), Expect = 8e-14
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP + E+LS R
Sbjct: 73 VNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVLSFAR----- 127
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ F +F K + G + + + FL ++ EP RWNF K
Sbjct: 128 NNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKK-------------EP------RWNFWK 168
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV P+G V W I ++ +I A +R+
Sbjct: 169 YLVNPEGQVVKYWRPEEPIEVIRPEIAALIRQ 200
>ref|XP_003133997.2| PREDICTED: probable glutathione peroxidase 8-like [Sus scrofa].
Length = 209
Score = 70.9 bits (172), Expect = 1e-12
Identities = 50/152 (32%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS LT + Y+ L L +EF PF +L FPCNQFG+ EP + E+LS R
Sbjct: 73 VNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVLSFAR----- 127
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ F +F K + G + + + FL ++ EP RWNF K
Sbjct: 128 NNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKK-------------EP------RWNFWK 168
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV P+G V W I + +I +R+
Sbjct: 169 YLVNPEGQVVKYWRPEEPIEVNRPEIAVLIRQ 200
>ref|NP_999572.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
precursor [Sus scrofa].
Length = 197
Score = 70.5 bits (171), Expect = 2e-12
Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 4 NVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y +L L + GL IL FPCNQFG+QEPG ++EI
Sbjct: 68 NVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSDAEIKEF------AA 121
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G+ F +F K VNG+ + ++K P +LG+ I+WNF KF
Sbjct: 122 GYNVKFDMFSKICVNGDDAHPLWKWMK-VQPKGRGMLGNA------------IKWNFTKF 168
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYM 447
L+ +G V R+ ++ D+ Y+
Sbjct: 169 LIDKNGCVVKRYGPMEEPQVIEKDLPCYL 197
>ref|XP_003361726.1| PREDICTED: glutathione peroxidase 7-like [Sus scrofa].
Length = 242
Score = 57.8 bits (138), Expect = 1e-08
Identities = 46/144 (31%), Positives = 61/144 (42%)
Frame = +1
Query: 22 GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGGGFIPNFQ 201
G T Q+ ALQ+ G V L FPCNQFG+QEP N EI S R + +F
Sbjct: 117 GFTDQHYR--ALQQLQRDLGXV-LAFPCNQFGQQEPDSNKEIESFARRT-----YSVSFP 168
Query: 202 LFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKFLVGPDGV 381
+F K V G + +L EP WNF K+LV PDG
Sbjct: 169 MFSKIAVTGTGAHPAFKYLTQTSGK-------------EP------TWNFWKYLVAPDGK 209
Query: 382 PVMRWYHRTTINTVKLDILAYMRR 453
V W ++ ++ I A +R+
Sbjct: 210 VVGAWDPTVSVEEIRPQITALVRK 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,894,907
Number of extensions: 1054622
Number of successful extensions: 5250
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5161
Number of HSP's successfully gapped: 9
Length of query: 367
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,854,232
Effective search space: 2364079944
Effective search space used: 2364079944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013096
(1101 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077398.1| glutathione peroxidase 3 isoform 1 [Mus musc... 293 1e-79
Alignment gi|NP_032187.2| glutathione peroxidase 3 isoform 2 [Mus musculu... 293 1e-79
Alignment gi|NP_663426.2| glutathione peroxidase 6 precursor [Mus musculu... 248 5e-66
Alignment gi|NP_034473.2| epididymal secretory glutathione peroxidase pre... 238 6e-63
Alignment gi|NP_032186.2| glutathione peroxidase 1 [Mus musculus]. 163 2e-40
Alignment gi|NP_109602.2| glutathione peroxidase 2 [Mus musculus]. 130 2e-30
Alignment gi|NP_032188.3| phospholipid hydroperoxide glutathione peroxida... 71 1e-12
Alignment gi|NP_001032830.2| phospholipid hydroperoxide glutathione perox... 71 1e-12
Alignment gi|NP_077160.1| glutathione peroxidase 7 precursor [Mus musculu... 62 6e-10
Alignment gi|NP_081403.1| probable glutathione peroxidase 8 [Mus musculus]. 61 2e-09
>ref|NP_001077398.1| glutathione peroxidase 3 isoform 1 [Mus musculus].
Length = 248
Score = 293 bits (751), Expect = 1e-79
Identities = 134/158 (84%), Positives = 149/158 (94%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVASY GLT QY+ELNALQEE PFGLVILGFP NQFGKQEPG+NSEIL +L+YVRPGG
Sbjct: 89 VNVASYUGLTDQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGG 148
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPT+ELLGSP RLFWEPMK+HDIRWNFEKF
Sbjct: 149 GFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKF 208
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 474
LVGPDG+PVMRWYHRTT++ VK+DIL+YMRR+AAL A+
Sbjct: 209 LVGPDGIPVMRWYHRTTVSNVKMDILSYMRRQAALSAR 246
>ref|NP_032187.2| glutathione peroxidase 3 isoform 2 [Mus musculus].
Length = 226
Score = 293 bits (751), Expect = 1e-79
Identities = 134/158 (84%), Positives = 149/158 (94%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVASY GLT QY+ELNALQEE PFGLVILGFP NQFGKQEPG+NSEIL +L+YVRPGG
Sbjct: 67 VNVASYUGLTDQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPT+ELLGSP RLFWEPMK+HDIRWNFEKF
Sbjct: 127 GFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAK 474
LVGPDG+PVMRWYHRTT++ VK+DIL+YMRR+AAL A+
Sbjct: 187 LVGPDGIPVMRWYHRTTVSNVKMDILSYMRRQAALSAR 224
>ref|NP_663426.2| glutathione peroxidase 6 precursor [Mus musculus].
Length = 221
Score = 248 bits (634), Expect = 5e-66
Identities = 110/151 (72%), Positives = 128/151 (84%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVAS+ GLT Y ELN LQEE +PF + +LGFPCNQFGKQEPG NSEIL L+YVRPGG
Sbjct: 67 VNVASFCGLTATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G++PNFQLFEKGDVNG+ EQK ++FLKN+CPPTSEL GSP LFW+PMKVHDIRWNFEKF
Sbjct: 127 GYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDGVPVMRW+H T + V+ DI+ Y+ +
Sbjct: 187 LVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQ 217
>ref|NP_034473.2| epididymal secretory glutathione peroxidase precursor [Mus
musculus].
Length = 221
Score = 238 bits (607), Expect = 6e-63
Identities = 109/149 (73%), Positives = 125/149 (83%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GLT QY ELNALQE+ +PFGLVILGFPCNQFGKQEPGDN EIL L+YVRPG
Sbjct: 67 VNVATYCGLTIQYPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGK 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+PNFQLF KGDVNGE EQK +TFLK +CP SE + FWEP+KVHDIRWNFEKF
Sbjct: 127 GFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTFWEPIKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYM 447
LVGPDG+PVMRW+H+ ++TVK DI+AY+
Sbjct: 187 LVGPDGIPVMRWFHQAPVSTVKSDIMAYL 215
>ref|NP_032186.2| glutathione peroxidase 1 [Mus musculus].
Length = 201
Score = 163 bits (413), Expect = 2e-40
Identities = 84/149 (56%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Frame = +1
Query: 4 NVASY*GLT-GQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y E+N LQ+ P GLV+LGFPCNQFG QE G N EIL++L+YVRPGG
Sbjct: 42 NVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGG 101
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSE----LLGSPSRLFWEPMKVHDIRWN 348
GF PNF LFEK +VNGEK +TFL+NA P S+ L+ P + W P+ +DI WN
Sbjct: 102 GFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWN 161
Query: 349 FEKFLVGPDGVPVMRWYHRTTINTVKLDI 435
FEKFLVGPDGVPV R+ R ++ DI
Sbjct: 162 FEKFLVGPDGVPVRRYSRRFRTIDIEPDI 190
>ref|NP_109602.2| glutathione peroxidase 2 [Mus musculus].
Length = 190
Score = 130 bits (326), Expect = 2e-30
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 5/149 (3%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + Y +LN LQ F P LV+LGFPCNQFG QE N EIL++L+YVRPGG
Sbjct: 35 NVASLUGTTTRDYNQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGG 93
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACP----PTSELLGSPSRLFWEPMKVHDIRWN 348
G+ P F L +K DVNG+ E + +LK+ P L+ P + W P++ D+ WN
Sbjct: 94 GYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWN 153
Query: 349 FEKFLVGPDGVPVMRWYHRTTINTVKLDI 435
FEKFL+GP+G P R+ ++ DI
Sbjct: 154 FEKFLIGPEGEPFRRYSRSFQTINIEPDI 182
>ref|NP_032188.3| phospholipid hydroperoxide glutathione peroxidase, nuclear isoform
2 precursor [Mus musculus].
Length = 197
Score = 71.2 bits (173), Expect = 1e-12
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 4 NVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y +L L + GL IL FPCNQFG+QEPG N EI
Sbjct: 68 NVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEF------AA 121
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G+ F ++ K VNG+ + ++K P +LG+ I+WNF KF
Sbjct: 122 GYNVKFDMYSKICVNGDDAHPLWKWMK-VQPKGRGMLGNA------------IKWNFTKF 168
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYM 447
L+ +G V R+ ++ D+ Y+
Sbjct: 169 LIDKNGCVVKRYGPMEEPQVIEKDLPCYL 197
>ref|NP_001032830.2| phospholipid hydroperoxide glutathione peroxidase, nuclear isoform
1 precursor [Mus musculus].
Length = 253
Score = 71.2 bits (173), Expect = 1e-12
Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Frame = +1
Query: 4 NVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y +L L + GL IL FPCNQFG+QEPG N EI
Sbjct: 124 NVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEF------AA 177
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G+ F ++ K VNG+ + ++K P +LG+ I+WNF KF
Sbjct: 178 GYNVKFDMYSKICVNGDDAHPLWKWMK-VQPKGRGMLGNA------------IKWNFTKF 224
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYM 447
L+ +G V R+ ++ D+ Y+
Sbjct: 225 LIDKNGCVVKRYGPMEEPQVIEKDLPCYL 253
>ref|NP_077160.1| glutathione peroxidase 7 precursor [Mus musculus].
Length = 186
Score = 62.4 bits (150), Expect = 6e-10
Identities = 48/143 (33%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS G T Q Y L LQ + P +L FPCNQFG+QEP N EI + R
Sbjct: 50 VNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRT--- 106
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ +F +F K V G + +L EP WNF K
Sbjct: 107 --YSVSFPMFSKIAVTGTGAHPAFKYLTQTSGK-------------EP------TWNFWK 145
Query: 358 FLVGPDGVPVMRWYHRTTINTVK 426
+LV PDG V W + +K
Sbjct: 146 YLVDPDGKVVGAWDPTVPVAEIK 168
>ref|NP_081403.1| probable glutathione peroxidase 8 [Mus musculus].
Length = 209
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS T + Y L L +EF P+ +L FPCNQFG+ EP + E+ S R
Sbjct: 73 VNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSSKEVESFARQ---- 128
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ F +F K + G + + + F+ ++ EP RWNF K
Sbjct: 129 -NYGVTFPIFHKIKILGPEAEPAFRFIVDSSKK-------------EP------RWNFWK 168
Query: 358 FLVGPDGVPVMRWYHRTTINTVK 426
+LV P+G V W + ++
Sbjct: 169 YLVNPEGQVVKFWRPEEPLEAIR 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,369,844
Number of extensions: 1358389
Number of successful extensions: 6376
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6236
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 264
Effective length of database: 12,523,851
Effective search space: 3306296664
Effective search space used: 3306296664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013096
(1101 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002075.2| glutathione peroxidase 3 precursor [Homo sapien... 299 3e-81
Alignment gi|NP_874360.1| glutathione peroxidase 6 precursor [Homo sapien... 249 2e-66
Alignment gi|NP_001500.1| epididymal secretory glutathione peroxidase iso... 249 4e-66
Alignment gi|NP_000572.2| glutathione peroxidase 1 isoform 1 [Homo sapien... 149 3e-36
Alignment gi|NP_002074.2| glutathione peroxidase 2 [Homo sapiens]. 129 5e-30
Alignment gi|NP_001034937.1| phospholipid hydroperoxide glutathione perox... 71 2e-12
Alignment gi|NP_002076.2| phospholipid hydroperoxide glutathione peroxida... 71 2e-12
Alignment gi|NP_056511.2| glutathione peroxidase 7 precursor [Homo sapien... 70 3e-12
Alignment gi|NP_001008398.2| probable glutathione peroxidase 8 [Homo sapi... 69 8e-12
Alignment gi|NP_001034936.1| phospholipid hydroperoxide glutathione perox... 64 2e-10
>ref|NP_002075.2| glutathione peroxidase 3 precursor [Homo sapiens].
Length = 226
Score = 299 bits (765), Expect = 3e-81
Identities = 136/160 (85%), Positives = 151/160 (94%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVASY GLTGQY+ELNALQEE PFGLVILGFPCNQFGKQEPG+NSEIL TL+YVRPGG
Sbjct: 67 VNVASYUGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+PNFQLFEKGDVNGEKEQKFYTFLKN+CPPTSELLG+ RLFWEPMKVHDIRWNFEKF
Sbjct: 127 GFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALEAKRQ 480
LVGPDG+P+MRW+HRTT++ VK+DIL+YMRR+AAL KR+
Sbjct: 187 LVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK 226
>ref|NP_874360.1| glutathione peroxidase 6 precursor [Homo sapiens].
Length = 221
Score = 249 bits (637), Expect = 2e-66
Identities = 113/151 (74%), Positives = 132/151 (87%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GL QY ELNALQEE + FG+++L FPCNQFGKQEPG NSEIL L+YV PG
Sbjct: 67 VNVAAYUGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGS 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+P+FQLFEKGDVNGEKEQK +TFLKN+CPPTS+LLGS S+LFWEPMKVHDIRWNFEKF
Sbjct: 127 GFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDGVPVM W+H+ ++TVK DIL Y+++
Sbjct: 187 LVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217
>ref|NP_001500.1| epididymal secretory glutathione peroxidase isoform 1 precursor
[Homo sapiens].
Length = 221
Score = 249 bits (635), Expect = 4e-66
Identities = 111/151 (73%), Positives = 134/151 (88%)
Frame = +1
Query: 1 VNVASY*GLTGQYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
VNVA+Y GLT QY ELNALQEE +P+GLV+LGFPCNQFGKQEPGDN EIL L+YVRPGG
Sbjct: 67 VNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGG 126
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
GF+P+FQLFEKGDVNGEKEQK ++FLK++CP SE+LG+ + W+P+KVHDIRWNFEKF
Sbjct: 127 GFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKF 186
Query: 361 LVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
LVGPDG+PVMRW HR T+++VK DILAY+++
Sbjct: 187 LVGPDGIPVMRWSHRATVSSVKTDILAYLKQ 217
>ref|NP_000572.2| glutathione peroxidase 1 isoform 1 [Homo sapiens].
Length = 203
Score = 149 bits (377), Expect = 3e-36
Identities = 77/153 (50%), Positives = 98/153 (64%), Gaps = 5/153 (3%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + Y ++N LQ P GLV+LGFPCNQFG QE N EIL++L+YVRPGG
Sbjct: 44 NVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGG 103
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSE----LLGSPSRLFWEPMKVHDIRWN 348
GF PNF LFEK +VNG + FL+ A P S+ L+ P + W P+ +D+ WN
Sbjct: 104 GFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWN 163
Query: 349 FEKFLVGPDGVPVMRWYHRTTINTVKLDILAYM 447
FEKFLVGPDGVP+ R+ R ++ DI A +
Sbjct: 164 FEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 196
>ref|NP_002074.2| glutathione peroxidase 2 [Homo sapiens].
Length = 190
Score = 129 bits (324), Expect = 5e-30
Identities = 71/145 (48%), Positives = 92/145 (63%), Gaps = 7/145 (4%)
Frame = +1
Query: 4 NVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T + + +LN LQ F P LV+LGFPCNQFG QE N EIL++L+YVRPGG
Sbjct: 35 NVASLUGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGG 93
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACP----PTSELLGSPSRLFWEPMKVHDIRWN 348
G+ P F L +K +VNG+ E + +LK+ P L+ P + W P++ D+ WN
Sbjct: 94 GYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWN 153
Query: 349 FEKFLVGPDGVPVMRWYHRT--TIN 417
FEKFL+GP+G P R Y RT TIN
Sbjct: 154 FEKFLIGPEGEPFRR-YSRTFPTIN 177
>ref|NP_001034937.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform C precursor [Homo sapiens].
Length = 234
Score = 71.2 bits (173), Expect = 2e-12
Identities = 49/132 (37%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +1
Query: 4 NVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y +L L + GL IL FPCNQFGKQEPG N EI
Sbjct: 105 NVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF------AA 158
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G+ F +F K VNG+ + ++K P +LG+ I+WNF KF
Sbjct: 159 GYNVKFDMFSKICVNGDDAHPLWKWMK-IQPKGKGILGNA------------IKWNFTKF 205
Query: 361 LVGPDGVPVMRW 396
L+ +G V R+
Sbjct: 206 LIDKNGCVVKRY 217
>ref|NP_002076.2| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform A precursor [Homo sapiens].
Length = 197
Score = 71.2 bits (173), Expect = 2e-12
Identities = 49/132 (37%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +1
Query: 4 NVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y +L L + GL IL FPCNQFGKQEPG N EI
Sbjct: 68 NVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF------AA 121
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G+ F +F K VNG+ + ++K P +LG+ I+WNF KF
Sbjct: 122 GYNVKFDMFSKICVNGDDAHPLWKWMK-IQPKGKGILGNA------------IKWNFTKF 168
Query: 361 LVGPDGVPVMRW 396
L+ +G V R+
Sbjct: 169 LIDKNGCVVKRY 180
>ref|NP_056511.2| glutathione peroxidase 7 precursor [Homo sapiens].
Length = 187
Score = 70.1 bits (170), Expect = 3e-12
Identities = 53/157 (33%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS G T Q Y L LQ + P +L FPCNQFG+QEP N EI S R
Sbjct: 51 VNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRT--- 107
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
+ +F +F K V G + +L EP WNF K
Sbjct: 108 --YSVSFPMFSKIAVTGTGAHPAFKYLAQTSGK-------------EP------TWNFWK 146
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRRRAALE 468
+LV PDG V W ++ V+ I A +R+ L+
Sbjct: 147 YLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLK 183
>ref|NP_001008398.2| probable glutathione peroxidase 8 [Homo sapiens].
Length = 209
Score = 68.9 bits (167), Expect = 8e-12
Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Frame = +1
Query: 1 VNVASY*GLTGQ-YVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPG 177
VNVAS LT + Y+ L L +EF P +L FPCNQFG+ EP + E+ S + R
Sbjct: 73 VNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES---FARKN 129
Query: 178 GGFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEK 357
G F +F K + G + + + FL ++ EP RWNF K
Sbjct: 130 YGV--TFPIFHKIKILGSEGEPAFRFLVDSSKK-------------EP------RWNFWK 168
Query: 358 FLVGPDGVPVMRWYHRTTINTVKLDILAYMRR 453
+LV P+G V W I ++ DI A +R+
Sbjct: 169 YLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200
>ref|NP_001034936.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial
isoform B precursor [Homo sapiens].
Length = 227
Score = 63.9 bits (154), Expect = 2e-10
Identities = 45/120 (37%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Frame = +1
Query: 4 NVASY*GLTG-QYVELNALQEEFEPFGLVILGFPCNQFGKQEPGDNSEILSTLRYVRPGG 180
NVAS G T Y +L L + GL IL FPCNQFGKQEPG N EI
Sbjct: 68 NVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF------AA 121
Query: 181 GFIPNFQLFEKGDVNGEKEQKFYTFLKNACPPTSELLGSPSRLFWEPMKVHDIRWNFEKF 360
G+ F +F K VNG+ + ++K P +LG+ I+WNF KF
Sbjct: 122 GYNVKFDMFSKICVNGDDAHPLWKWMK-IQPKGKGILGNA------------IKWNFTKF 168
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,346,561
Number of extensions: 1638245
Number of successful extensions: 8049
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7895
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 263
Effective length of database: 14,868,908
Effective search space: 3910522804
Effective search space used: 3910522804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013096
(1101 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1614 0.0
Sscrofa_Chr07 125 5e-26
Sscrofa_Chr13 60 3e-06
>Sscrofa_Chr16
|| Length = 86898991
Score = 1614 bits (814), Expect = 0.0
Identities = 835/842 (99%)
Strand = Plus / Plus
Query: 260 agaacgcctgtcctcctacttcggagctcctgggctcaccgagccgcctattctgggaac 319
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 78289857 agaacgcctgtcctcctacttcggagcttctgggctcaccgagccgcctattctgggaac 78289916
Query: 320 ccatgaaggtccatgacatccgctggaactttgagaagttcctggtggggcccgacggtg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289917 ccatgaaggtccatgacatccgctggaactttgagaagttcctggtggggcccgacggtg 78289976
Query: 380 tgcccgtcatgcgctggtaccaccgcaccaccatcaacactgtcaagctggacatcctgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289977 tgcccgtcatgcgctggtaccaccgcaccaccatcaacactgtcaagctggacatcctgg 78290036
Query: 440 cctacatgcggcggcgggcagccctggaggccaagcggcagtaatggaggcccaccccac 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290037 cctacatgcggcggcgggcagccctggaggccaagcggcagtaatggaggcccaccccac 78290096
Query: 500 cctgtgcccaccccacaggggctggggaggactctgttcaggaaggaatccatttctaca 559
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290097 cctgtgcccaccccccaggggctggggaggactctgttcaggaaggaatccatttctaca 78290156
Query: 560 accacaccgctgtcccctgctagacccctcactaggacacaagggcccagcccgacagga 619
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290157 accacgccgctgtcccctgctagacccctcactaggacacaagggcccagcccgacagga 78290216
Query: 620 aggtgtgcacacaactgtgtctgtactgctgtgcttgtgagcatgtgcatgcgtgcctac 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290217 aggtgtgcacacaactgtgtctgtactgctgtgcttgtgagcatgtgcatgcgtgcctac 78290276
Query: 680 aggtgtgtgtgatcacaggagtgcactgccacttacaggcgtggcgacctgcaggaatcc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290277 aggtgtgtgtgatcacaggagtgcactgccacttacaggcgtggcgacctgcaggaatcc 78290336
Query: 740 ccaggcctgtaagtgtgcccacagctgtgtgccgggggcggggtgccggagcgtcactcg 799
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 78290337 ccaggcctgtaagtgtgcccacagctgtgtgccgggggcagggtgccggagcgtcactcc 78290396
Query: 800 cctctcgctctggttctctgctccaatgatcacaactcactttcagtgagcccaaaggaa 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290397 cctctcgctctggttctctgctccaatgatcacaactcactttcagtgagcccaaaggaa 78290456
Query: 860 aaaaccagttctagattcaattggtctgctctaacctggactttagcccttggggccggc 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 78290457 aaaaccagttctagattcaattggtctgctctaacctggactttagcccttggggccagc 78290516
Query: 920 atctcccactgtctccagacaccaccagtgaagtgcccagaagcttctgggtctgccaca 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290517 atctcccactgtctccagacaccaccagtgaagtgcccagaagcttctgggtctgccaca 78290576
Query: 980 cagccctcctctccccgacatggcctctctccttcctgagggccctctcaagccccctgc 1039
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290577 cagcccccctctccccgacatggcctctctccttcctgagggccctctcaagccccctgc 78290636
Query: 1040 cccaccccacagtgttccctgagagcagccaaggcagatgtgagagcaaaggccacgatc 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78290637 cccaccccacagtgttccctgagagcagccaaggcagatgtgagagcaaaggccacgatc 78290696
Query: 1100 cc 1101
||
Sbjct: 78290697 cc 78290698
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 43 gaactgaatgcactgcaggaagagtttgaaccctttggcctcgtcattctgggcttcccc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78288787 gaactgaatgcactgcaggaagagtttgaaccctttggcctcgtcattctgggcttcccc 78288846
Query: 103 tgcaaccaatttggaaaacaggaaccgggagacaactcggagattctgtccactctcagg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78288847 tgcaaccaatttggaaaacaggaaccgggagacaactcggagattctgtccactctcagg 78288906
Query: 163 t 163
|
Sbjct: 78288907 t 78288907
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 159 caggtatgtccgaccaggtgggggcttcatccccaatttccagctctttgagaaagggga 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289350 caggtatgtccgaccaggtgggggcttcatccccaatttccagctctttgagaaagggga 78289409
Query: 219 cgtgaacggggagaaggagcagaagttctacacgttcctgaag 261
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78289410 cgtgaacggggagaaggagcagaagttctacacgttcctgaag 78289452
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 1 gtcaacgtggccagctactgaggcctgacgggtcagtacgttg 43
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 78287248 gtcaacgtggccagctactgaggcctgacgggccagtacgttg 78287290
>Sscrofa_Chr07
|| Length = 134764511
Score = 125 bits (63), Expect = 5e-26
Identities = 87/95 (91%)
Strand = Plus / Minus
Query: 310 ttctgggaacccatgaaggtccatgacatccgctggaactttgagaagttcctggtgggg 369
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 24200878 ttctgggagcccatgaaggtccatgacattcgctggaactttgagaagttcctggtgggg 24200819
Query: 370 cccgacggtgtgcccgtcatgcgctggtaccaccg 404
|| || || || || || |||||||||||||||||
Sbjct: 24200818 cctgatggagtccctgttatgcgctggtaccaccg 24200784
Score = 79.8 bits (40), Expect = 3e-12
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 313 tgggaacccatgaaggtccatgacatccgctggaactttgagaagttcctggtggggccc 372
||||||||||| | |||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 24243919 tgggaacccatcagggtccacgacatccgctggaattttgaaaagttcctggtagggcct 24243978
Query: 373 gacggtgtgcccgtcatgcgctgg 396
|| || || || ||||||||||||
Sbjct: 24243979 gatggagtccctgtcatgcgctgg 24244002
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 92 tgggcttcccctgcaaccaatttggaaaacaggaaccgggagacaactcggagattct 149
||||||| ||||||||||||||||||||||| ||||| | | | ||||| ||||||||
Sbjct: 24202639 tgggctttccctgcaaccaatttggaaaacaagaaccagcaaagaactcagagattct 24202582
>Sscrofa_Chr13
|| Length = 218635234
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 343 tggaactttgagaagttcctggtggggcccgacggtgtgccc 384
|||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 35147581 tggaacttcgagaagttcctggtgggcccagacggtgtgccc 35147540
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,160,790
Number of extensions: 293
Number of successful extensions: 293
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 8
Length of query: 1101
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1080
Effective length of database: 2,808,413,156
Effective search space: 3033086208480
Effective search space used: 3033086208480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)