Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013104
(805 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019809.1| nucleoside diphosphate kinase B [Canis lupus... 296 1e-80
Alignment gi|NP_001019808.1| nucleoside diphosphate kinase A [Canis lupus... 281 6e-76
Alignment gi|XP_533973.2| PREDICTED: similar to expressed in non-metastat... 269 2e-72
Alignment gi|XP_852718.1| PREDICTED: similar to expressed in non-metastat... 268 4e-72
Alignment gi|XP_541063.2| PREDICTED: similar to expressed in non-metastat... 252 2e-67
Alignment gi|XP_854796.1| PREDICTED: similar to expressed in non-metastat... 246 2e-65
Alignment gi|XP_546907.2| PREDICTED: similar to expressed in non-metastat... 241 6e-64
Alignment gi|XP_534114.2| PREDICTED: similar to Nucleoside diphosphate ki... 180 1e-45
Alignment gi|XP_853834.1| PREDICTED: similar to Nucleoside diphosphate ki... 178 5e-45
Alignment gi|XP_854282.1| PREDICTED: similar to Nucleoside diphosphate ki... 148 5e-36
>ref|NP_001019809.1| nucleoside diphosphate kinase B [Canis lupus familiaris].
Length = 152
Score = 296 bits (758), Expect = 1e-80
Identities = 140/152 (92%), Positives = 150/152 (98%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MAH ERTFIA+KPDGVQRGLVG+I+KRFEQKGFRLVA+KFL+ASE+LLK+HYIDLKDRPF
Sbjct: 1 MAHQERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
+PGLVKYM SGPVVAMVWEGLNVVKTGR+MLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 YPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEISLWFKPEELV+YKSCAFDWIYE
Sbjct: 121 DSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152
>ref|NP_001019808.1| nucleoside diphosphate kinase A [Canis lupus familiaris].
Length = 152
Score = 281 bits (718), Expect = 6e-76
Identities = 134/152 (88%), Positives = 146/152 (96%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA++ERTFIA+KPDGVQR LVGEIIKRFEQKGFRL+A+K +QASE+LLK+HYIDLKDRPF
Sbjct: 1 MANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F GLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FAGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI LWF+PEELV+YKSCA +WIYE
Sbjct: 121 DSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152
>ref|XP_533973.2| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 152
Score = 269 bits (688), Expect = 2e-72
Identities = 128/152 (84%), Positives = 142/152 (93%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA++ERTFIA+KPDGVQR L+GEIIK FEQKGFRL+A+K +QASE+LLK+HYIDLKDRPF
Sbjct: 1 MANSERTFIAIKPDGVQRNLLGEIIKCFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F L KYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FASLEKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+S EKEI +WF+PEELV+YKSCA +WIYE
Sbjct: 121 DSVESVEKEIGVWFQPEELVDYKSCAQNWIYE 152
>ref|XP_852718.1| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 152
Score = 268 bits (685), Expect = 4e-72
Identities = 127/152 (83%), Positives = 141/152 (92%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA++ERTFIA+KPDGVQR LVGEIIKR EQKGF L+A+K +QASE+LLK+HYIDLKDRPF
Sbjct: 1 MANSERTFIAIKPDGVQRNLVGEIIKRLEQKGFCLIAMKLIQASEDLLKEHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F GLVKYM SGPVVA VWEGLN VKTGRVMLGETNP +SKPGTIRGDFCIQVGRN+IHGS
Sbjct: 61 FAGLVKYMQSGPVVATVWEGLNAVKTGRVMLGETNPGESKPGTIRGDFCIQVGRNVIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI LWF+PEELV+YKSCA +WIYE
Sbjct: 121 DSVESAEKEIGLWFQPEELVDYKSCAQNWIYE 152
>ref|XP_541063.2| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 264
Score = 252 bits (644), Expect = 2e-67
Identities = 123/159 (77%), Positives = 139/159 (87%)
Frame = +3
Query: 153 RTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDR 332
RTMA++E TF+A+KPDGVQR LVGE IK FEQKGF L+A+K +QASE+ LK+HYIDLKD
Sbjct: 91 RTMANSEHTFVAIKPDGVQRNLVGETIKHFEQKGFCLIAMKLIQASEDFLKEHYIDLKDH 150
Query: 333 PFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIH 512
PFF LVKYM SGPVVAMV +GLNVVKTG+VML ETN ADSKPGTI GDFCIQVGRNIIH
Sbjct: 151 PFFASLVKYMQSGPVVAMVRKGLNVVKTGQVMLRETNSADSKPGTIHGDFCIQVGRNIIH 210
Query: 513 GSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE*EVDR 629
GSDSV+SAEKEI LWF+PEE V+YKSCA +WIYE +V R
Sbjct: 211 GSDSVESAEKEIDLWFQPEERVDYKSCAQNWIYECQVMR 249
>ref|XP_854796.1| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 169
Score = 246 bits (628), Expect = 2e-65
Identities = 120/145 (82%), Positives = 130/145 (89%)
Frame = +3
Query: 177 TFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLVK 356
TFIA+KPDGVQR VGEIIK F+QKGF L A+K +QASE+LLK+HYIDLKDRPFF GLVK
Sbjct: 11 TFIAIKPDGVQRNFVGEIIKCFKQKGFCLTAMKLIQASEDLLKEHYIDLKDRPFFAGLVK 70
Query: 357 YMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSA 536
YM SGPVVAMV EGLNVVKTG VMLGETNP DSKPGTIRGDFCIQV RNIIHGSDSV+SA
Sbjct: 71 YMQSGPVVAMVLEGLNVVKTGLVMLGETNPVDSKPGTIRGDFCIQVDRNIIHGSDSVESA 130
Query: 537 EKEISLWFKPEELVEYKSCAFDWIY 611
EKEI LW +PEELV+YKSCA +WIY
Sbjct: 131 EKEIGLWIQPEELVDYKSCAKNWIY 155
>ref|XP_546907.2| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 164
Score = 241 bits (615), Expect = 6e-64
Identities = 120/154 (77%), Positives = 136/154 (88%)
Frame = +3
Query: 153 RTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDR 332
RTM +E TFIA+KPDGVQ LVGEI+KRF+QK L+A+K +QASE+LLK+HYIDLKD
Sbjct: 12 RTMTSSECTFIAIKPDGVQCNLVGEIMKRFKQKVSCLIAMKLIQASEDLLKEHYIDLKDL 71
Query: 333 PFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIH 512
PFF GLVKYM SGPVVA+VWEGLNVVKTGRVMLGET+PADSKPGTI GDFCIQ+GR IIH
Sbjct: 72 PFFAGLVKYMQSGPVVAIVWEGLNVVKTGRVMLGETDPADSKPGTICGDFCIQIGRKIIH 131
Query: 513 GSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
GSDSV+ AEKEI L F+PEELV+YKSCA +WIYE
Sbjct: 132 GSDSVERAEKEIGL-FQPEELVDYKSCAQNWIYE 164
>ref|XP_534114.2| PREDICTED: similar to Nucleoside diphosphate kinase, mitochondrial
precursor (NDP kinase, mitochondrial) (NDK) (nm23-H4)
(Nucleoside diphosphate kinase D) (NDPKD) [Canis
familiaris].
Length = 773
Score = 180 bits (457), Expect = 1e-45
Identities = 85/148 (57%), Positives = 113/148 (76%)
Frame = +3
Query: 141 PPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYID 320
P S + ERT +AVKPDGVQR LVG++I+RFE++GF+LV +K LQA E +L +H+ D
Sbjct: 614 PNSGGSSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFKLVGMKMLQAPERVLAEHHHD 673
Query: 321 LKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 500
L+ +PF+P L+ YM SGPVVAMVWEG +VV + R M+G T+ A++ PGTIRGDF I + R
Sbjct: 674 LQRKPFYPPLISYMTSGPVVAMVWEGPSVVCSSRTMIGHTDSAEATPGTIRGDFSIHISR 733
Query: 501 NIIHGSDSVKSAEKEISLWFKPEELVEY 584
NIIH SDSV+ A +EI LWF+ ELV++
Sbjct: 734 NIIHASDSVEGARREIQLWFQSSELVDW 761
>ref|XP_853834.1| PREDICTED: similar to Nucleoside diphosphate kinase 3 (NDK 3) (NDP
kinase 3) (Nucleoside diphosphate kinase C) (NDPKC)
(nm23-H3) (DR-nm23) [Canis familiaris].
Length = 237
Score = 178 bits (452), Expect = 5e-45
Identities = 90/173 (52%), Positives = 122/173 (70%), Gaps = 31/173 (17%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
ERTF+AVKPDG QR LVGEI++R+E+KGF+LVALK +QAS+ELL++HY L++RPF+ GL
Sbjct: 26 ERTFLAVKPDGGQRRLVGEILRRYERKGFKLVALKLVQASDELLREHYAGLRERPFYGGL 85
Query: 351 VKYMGSGPVVAM----------------------VWEGLNVVKTGRVMLGETNPADSKPG 464
V YM SGPVVAM VW+GL+VV+ R ++G T+PAD+ PG
Sbjct: 86 VDYMRSGPVVAMVSAGGAGRAWERSWALTPPARAVWQGLDVVRASRALIGATDPADAAPG 145
Query: 465 TIRGDFCIQVG---------RNIIHGSDSVKSAEKEISLWFKPEELVEYKSCA 596
TIRGDFC++V RN+IHGSD V+SA +EI+LWF+ ++L+ ++ A
Sbjct: 146 TIRGDFCVEVAATGLTRLPRRNVIHGSDLVESARREIALWFRGDKLLCWEDSA 198
>ref|XP_854282.1| PREDICTED: similar to Nucleoside diphosphate kinase, mitochondrial
precursor (NDP kinase, mitochondrial) (NDK) (nm23-H4)
(Nucleoside diphosphate kinase D) (NDPKD) [Canis
familiaris].
Length = 435
Score = 148 bits (374), Expect = 5e-36
Identities = 67/111 (60%), Positives = 89/111 (80%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
ERT +AVKPDGVQR LVG++I+RFE++GF+LV +K LQA E +L +HY DL+ +PF+P L
Sbjct: 135 ERTLVAVKPDGVQRRLVGDVIQRFERRGFKLVGMKMLQAPERVLAEHYHDLQRKPFYPSL 194
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRN 503
+ YM SGPVVAMVWEG NVV + R M+G T+ A++ PGTIRGDF + + R+
Sbjct: 195 ISYMTSGPVVAMVWEGPNVVCSSRTMIGHTDSAEAAPGTIRGDFSVHISRD 245
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,826,828
Number of extensions: 762819
Number of successful extensions: 4004
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3977
Number of HSP's successfully gapped: 15
Length of query: 268
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 167
Effective length of database: 15,507,568
Effective search space: 2589763856
Effective search space used: 2589763856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013104
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013104
(805 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069844.1| nucleoside diphosphate kinase B [Bos taurus]. 304 5e-83
Alignment gi|NP_991346.2| nucleoside diphosphate kinase A 1 [Bos taurus]. 281 6e-76
Alignment gi|NP_991387.2| nucleoside diphosphate kinase A 1 [Bos taurus]. 281 6e-76
Alignment gi|XP_002695979.1| PREDICTED: NME1-NME2 protein-like [Bos tauru... 232 2e-61
Alignment gi|NP_001092456.1| nucleoside diphosphate kinase 3 [Bos taurus]. 224 7e-59
Alignment gi|NP_001071374.1| nucleoside diphosphate kinase 4 [Bos taurus]. 141 3e-35
Alignment gi|XP_002689257.1| PREDICTED: non-metastatic cells 5, protein e... 73 3e-13
Alignment gi|NP_001015656.1| nucleoside diphosphate kinase 7 [Bos taurus]. 69 4e-12
Alignment gi|NP_001178145.1| nucleoside diphosphate kinase homolog 5 [Bos... 67 1e-11
Alignment gi|XP_002697101.1| PREDICTED: nucleoside diphosphate kinase typ... 67 2e-11
>ref|NP_001069844.1| nucleoside diphosphate kinase B [Bos taurus].
Length = 152
Score = 304 bits (779), Expect = 5e-83
Identities = 146/152 (96%), Positives = 150/152 (98%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MAHAERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFLQASEELLKQHYIDLKDRPF
Sbjct: 1 MAHAERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEI+LWFKPEEL+EYK CAFDWIYE
Sbjct: 121 DSVKSAEKEINLWFKPEELIEYKPCAFDWIYE 152
>ref|NP_991346.2| nucleoside diphosphate kinase A 1 [Bos taurus].
Length = 152
Score = 281 bits (718), Expect = 6e-76
Identities = 134/152 (88%), Positives = 147/152 (96%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA++ERTFIA+KPDGVQRGL+GEIIKRFEQKGFRLVA+KF++ASE+LLK+HYIDLKDRPF
Sbjct: 1 MANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F GLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI+LWF PEELV YK+CA +WIYE
Sbjct: 121 DSVESAEKEIALWFHPEELVNYKNCAQNWIYE 152
>ref|NP_991387.2| nucleoside diphosphate kinase A 1 [Bos taurus].
Length = 152
Score = 281 bits (718), Expect = 6e-76
Identities = 134/152 (88%), Positives = 147/152 (96%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA++ERTFIA+KPDGVQRGL+GEIIKRFEQKGFRLVA+KF++ASE+LLK+HYIDLKDRPF
Sbjct: 1 MANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F GLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI+LWF PEELV YK+CA +WIYE
Sbjct: 121 DSVESAEKEIALWFHPEELVNYKNCAQNWIYE 152
>ref|XP_002695979.1| PREDICTED: NME1-NME2 protein-like [Bos taurus].
Length = 224
Score = 232 bits (592), Expect = 2e-61
Identities = 113/116 (97%), Positives = 115/116 (99%)
Frame = +3
Query: 153 RTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDR 332
RTMAHAERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFLQASEELLKQHYIDLKDR
Sbjct: 109 RTMAHAERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDR 168
Query: 333 PFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 500
PFFPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR
Sbjct: 169 PFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 224
Score = 78.2 bits (191), Expect = 8e-15
Identities = 36/43 (83%), Positives = 43/43 (100%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQA 287
MA++ERTFIA+KPDGVQRGL+GEIIKRFEQKGFRLVA+KF++A
Sbjct: 1 MANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRA 43
>ref|NP_001092456.1| nucleoside diphosphate kinase 3 [Bos taurus].
Length = 169
Score = 224 bits (571), Expect = 7e-59
Identities = 104/157 (66%), Positives = 135/157 (85%)
Frame = +3
Query: 144 PSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDL 323
P+ T H ERTF+AVKPDGVQR LVGEI++RFE+KGF+LVALK +QASEELL++HY +L
Sbjct: 14 PAAYTGVH-ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAEL 72
Query: 324 KDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRN 503
++RPFF LVKYMGSGPVVAMVW+GL+VV+ R ++G TNPAD+ PGTIRGDFCI+VG+N
Sbjct: 73 RERPFFGRLVKYMGSGPVVAMVWQGLDVVRASRALIGATNPADATPGTIRGDFCIEVGKN 132
Query: 504 IIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
+IHGSDSV+SA +EI+LWF+ +EL+ ++ + W+YE
Sbjct: 133 VIHGSDSVESARREIALWFRTDELLCWEDSSGHWLYE 169
>ref|NP_001071374.1| nucleoside diphosphate kinase 4 [Bos taurus].
Length = 255
Score = 141 bits (355), Expect(2) = 3e-35
Identities = 65/101 (64%), Positives = 81/101 (80%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
ERT +AVKPDGVQR LVG++I+RFE++GF+LV +K LQA E +L +HY DL+ +PF+P L
Sbjct: 38 ERTLVAVKPDGVQRRLVGDVIRRFERRGFKLVGMKMLQAPERILAEHYHDLQRKPFYPAL 97
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIR 473
+ YM SGPVVAMVWEG NVV T R M+G TN A + PGTIR
Sbjct: 98 ISYMSSGPVVAMVWEGPNVVCTSRAMIGHTNSAKAAPGTIR 138
Score = 25.8 bits (55), Expect(2) = 3e-35
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 478 TSAFRLAGTSFMAVIQ*KALRKKSACGLSPKSW 576
TSA AG S M V + R++S+CG SW
Sbjct: 140 TSAPTSAGMSSMPVTPWRGPRERSSCGSRAVSW 172
>ref|XP_002689257.1| PREDICTED: non-metastatic cells 5, protein expressed in
(nucleoside-diphosphate kinase)-like [Bos taurus].
Length = 209
Score = 72.8 bits (177), Expect = 3e-13
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Frame = +3
Query: 165 HAERTFIAVKPDGVQRGL-VGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFF 341
+ E+T +KPD V + + +II R GF +V + L S E Y++ + FF
Sbjct: 11 YVEKTLAIIKPDIVDKEEEIQDIILR---SGFTIVQRRKLHLSPEHCSNFYVEQYGKMFF 67
Query: 342 PGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 512
P L YM SGP+VAM+ N + + +LG +N +K P ++R + RN +H
Sbjct: 68 PNLTAYMSSGPLVAMILARYNAISYWKELLGPSNSLVAKETHPDSLRAIYGTDELRNALH 127
Query: 513 GSDSVKSAEKEISLWFKPEELVE 581
GS+ +AE+EI F P +VE
Sbjct: 128 GSNDFAAAEREIRFMF-PAVIVE 149
>ref|NP_001015656.1| nucleoside diphosphate kinase 7 [Bos taurus].
Length = 377
Score = 69.3 bits (168), Expect = 4e-12
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
E+T +KPD V + GEII+ + GF L LK + S + +ID + RPF L
Sbjct: 92 EKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 149
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 521
++++ SGP++AM + V + +LG N ++ P +IR F +N HG D
Sbjct: 150 IQFITSGPIIAMEILRDDAVCEWKRLLGPANSGLARTDAPESIRALFGTDGIKNAAHGPD 209
Query: 522 SVKSAEKEISLWF 560
S A +E+ L+F
Sbjct: 210 SFACAAREMELFF 222
Score = 55.8 bits (133), Expect = 4e-08
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Frame = +3
Query: 105 QVSAHFSTAARCPPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQ 284
++ F ++ C P+N T VKP V GL+G+I+ GF + A++
Sbjct: 217 EMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAVSEGLLGKILMTIRDAGFEISAMQMFN 276
Query: 285 ASEELLKQHYIDLKD-RPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADS-- 455
+++ Y K + +V M SGP VAM + N T R G +P +
Sbjct: 277 MDRINVEEFYEVYKGVVSEYNEMVTEMYSGPCVAMEIQQTNPTMTFREFCGPADPEIARH 336
Query: 456 -KPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFK 563
+PGT+R F +N +H +D + E+ +FK
Sbjct: 337 LRPGTLRAIFGKTKIQNAVHCTDLPEDGLLEVQYFFK 373
>ref|NP_001178145.1| nucleoside diphosphate kinase homolog 5 [Bos taurus].
Length = 209
Score = 67.4 bits (163), Expect = 1e-11
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Frame = +3
Query: 165 HAERTFIAVKPDGVQRGL-VGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFF 341
+ E+T +KPD V + + +II R GF +V + L S E Y++ + FF
Sbjct: 11 YVEKTLAIIKPDIVDKEEEIQDIILR---SGFTIVQRRKLHLSPEHCSNFYVEQYGKMFF 67
Query: 342 PGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 512
P L YM SGP+VAM+ N + + +LG +N +K P ++R + +N +H
Sbjct: 68 PNLTAYMSSGPLVAMILARYNAISYWKELLGPSNSLVAKETHPDSLRAIYGTDDLKNALH 127
Query: 513 GSDSVKSAEKEISLWFKPEELVE 581
GS+ + E+EI + P +VE
Sbjct: 128 GSNDFAAVEREIR-FMLPAVIVE 149
>ref|XP_002697101.1| PREDICTED: nucleoside diphosphate kinase type 6-like isoform 2 [Bos
taurus].
Length = 186
Score = 67.0 bits (162), Expect = 2e-11
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +3
Query: 177 TFIAVKPDGVQRGLVGEII-KRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLV 353
T +KPD V L+ E + ++ F +V ++ L +E ++ Y + + R F+ LV
Sbjct: 14 TLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQKFYREHEGRFFYQRLV 73
Query: 354 KYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSDS 524
++M SGP+ A + + ++ R ++G T ++ P +IRG F + RN HGSDS
Sbjct: 74 EFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDS 133
Query: 525 VKSAEKEISLWF 560
V SA +EI+ +F
Sbjct: 134 VVSASREIAAFF 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,817,032
Number of extensions: 785875
Number of successful extensions: 3927
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3891
Number of HSP's successfully gapped: 17
Length of query: 268
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 168
Effective length of database: 14,372,574
Effective search space: 2414592432
Effective search space used: 2414592432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013104
(805 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038075.1| nucleoside diphosphate kinase B [Sus scrofa]. 311 3e-85
Alignment gi|NP_001191688.1| nucleoside diphosphate kinase A [Sus scrofa]. 281 4e-76
Alignment gi|XP_003124767.1| PREDICTED: nucleoside diphosphate kinase 3-l... 222 2e-58
Alignment gi|NP_001137192.1| nucleoside diphosphate kinase, mitochondrial... 183 8e-47
Alignment gi|XP_003355116.1| PREDICTED: nucleoside diphosphate kinase 7, ... 75 4e-14
Alignment gi|XP_003354337.1| PREDICTED: nucleoside diphosphate kinase hom... 69 3e-12
Alignment gi|XP_003132229.1| PREDICTED: nucleoside diphosphate kinase 6-l... 67 9e-12
Alignment gi|XP_003132228.1| PREDICTED: nucleoside diphosphate kinase 6-l... 67 9e-12
Alignment gi|XP_003132227.1| PREDICTED: nucleoside diphosphate kinase 6-l... 67 9e-12
Alignment gi|XP_003132226.1| PREDICTED: nucleoside diphosphate kinase 6-l... 67 9e-12
>ref|NP_001038075.1| nucleoside diphosphate kinase B [Sus scrofa].
Length = 152
Score = 311 bits (797), Expect = 3e-85
Identities = 152/152 (100%), Positives = 152/152 (100%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF
Sbjct: 1 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE
Sbjct: 121 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 152
>ref|NP_001191688.1| nucleoside diphosphate kinase A [Sus scrofa].
Length = 152
Score = 281 bits (718), Expect = 4e-76
Identities = 136/152 (89%), Positives = 144/152 (94%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA +ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KF+QASE+LLK+HYIDLKDRPF
Sbjct: 1 MASSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFMQASEDLLKEHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F GLV YM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FAGLVTYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI LWF PEELV+YKSCA WIYE
Sbjct: 121 DSVESAEKEIGLWFHPEELVDYKSCAQAWIYE 152
>ref|XP_003124767.1| PREDICTED: nucleoside diphosphate kinase 3-like [Sus scrofa].
Length = 170
Score = 222 bits (566), Expect = 2e-58
Identities = 103/158 (65%), Positives = 134/158 (84%)
Frame = +3
Query: 141 PPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYID 320
P + T H ERTF+AVKPDGVQR LVGEI++RFE+KGF+LVALK +QASEELL++HY +
Sbjct: 14 PAAAYTGVH-ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAE 72
Query: 321 LKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 500
L++RPF+ LVKYMGSGPVVAMVW+GL+VV+ R ++G TNP D+ PGTIRGDFCI+VG+
Sbjct: 73 LRERPFYGRLVKYMGSGPVVAMVWQGLDVVRASRALIGATNPVDATPGTIRGDFCIEVGK 132
Query: 501 NIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
N+IHGSDSV+SA +EI+LWF+ +EL+ ++ A W+YE
Sbjct: 133 NVIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 170
>ref|NP_001137192.1| nucleoside diphosphate kinase, mitochondrial [Sus scrofa].
Length = 187
Score = 183 bits (465), Expect = 8e-47
Identities = 86/149 (57%), Positives = 111/149 (74%)
Frame = +3
Query: 138 CPPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYI 317
CP R ERT +AVKPDGVQR L G++I+RFE++GF+LV +K LQ E LL +HY
Sbjct: 32 CPSWTR-----ERTLVAVKPDGVQRRLGGDVIQRFERRGFKLVGMKMLQVPESLLAEHYH 86
Query: 318 DLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 497
+L+ +PF+P L+ YM SGPVVAMVWEG NVV R M+G TN A++ PGTIRGDF I +
Sbjct: 87 ELRRKPFYPALISYMSSGPVVAMVWEGPNVVCASRAMIGHTNSAEAAPGTIRGDFSIHIS 146
Query: 498 RNIIHGSDSVKSAEKEISLWFKPEELVEY 584
RN+IH SDSV+ A++EI LWF+ ELV++
Sbjct: 147 RNVIHASDSVEGAQREIQLWFQSSELVDW 175
>ref|XP_003355116.1| PREDICTED: nucleoside diphosphate kinase 7, partial [Sus scrofa].
Length = 372
Score = 75.1 bits (183), Expect = 4e-14
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
E+T +KPD V + GEII+ + GF L LK + S + +ID + RPF L
Sbjct: 91 EKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 148
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 521
++++ SGP++AM + + + +LG N ++ PG+IR F RN HG D
Sbjct: 149 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 208
Query: 522 SVKSAEKEISLWF 560
S+ A +E+ L+F
Sbjct: 209 SLSCAAREMELFF 221
Score = 52.4 bits (124), Expect = 3e-07
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Frame = +3
Query: 105 QVSAHFSTAARCPPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQ 284
++ F ++ C P+N T VKP + GL+G+I+ GF + A++
Sbjct: 216 EMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFN 275
Query: 285 ASEELLKQHYIDLKD-RPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADS-- 455
+++ Y K + +V M SGP VAM + N T R G +P +
Sbjct: 276 MDRVNVEEFYEVYKGVVSEYNEMVTEMYSGPCVAMEIQQTNPTMTFREFCGPADPEIARH 335
Query: 456 -KPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISL 554
+PGT+R F +N +H +D + E+ +
Sbjct: 336 LRPGTLRAIFGKTKIQNAVHCTDLPEDGLLEVKI 369
>ref|XP_003354337.1| PREDICTED: nucleoside diphosphate kinase homolog 5-like [Sus
scrofa].
Length = 212
Score = 68.9 bits (167), Expect = 3e-12
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Frame = +3
Query: 165 HAERTFIAVKPDGVQRGL-VGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFF 341
+ E+T +KPD V + + +II R GF +V + L S E Y++ + FF
Sbjct: 11 YVEKTLAIIKPDIVDKEEEIQDIILR---SGFTIVQRRKLHLSPEHCSNFYVEQYGKMFF 67
Query: 342 PGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 512
P L YM SGP+VAMV + + +LG +N +K P ++R + RN +H
Sbjct: 68 PNLTAYMSSGPLVAMVLARHKAISYWKELLGPSNSLIAKETHPDSLRAIYGTDELRNALH 127
Query: 513 GSDSVKSAEKEISLWF 560
GS+ +AE+EI F
Sbjct: 128 GSNDFAAAEREIRFMF 143
>ref|XP_003132229.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 5 [Sus
scrofa].
Length = 186
Score = 67.4 bits (163), Expect = 9e-12
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +3
Query: 177 TFIAVKPDGVQRGLVGEII-KRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLV 353
T +KPD V L+ E I ++ F +V ++ L +E ++ Y + + R F+ LV
Sbjct: 14 TLALIKPDAVAHPLILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRLV 73
Query: 354 KYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSDS 524
++M SGP+ A + + ++ R ++G T ++ P +IRG F + RN HGSDS
Sbjct: 74 EFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSDS 133
Query: 525 VKSAEKEISLWF 560
V SA +EI+ +F
Sbjct: 134 VVSASREIAAFF 145
>ref|XP_003132228.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 4 [Sus
scrofa].
Length = 186
Score = 67.4 bits (163), Expect = 9e-12
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +3
Query: 177 TFIAVKPDGVQRGLVGEII-KRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLV 353
T +KPD V L+ E I ++ F +V ++ L +E ++ Y + + R F+ LV
Sbjct: 14 TLALIKPDAVAHPLILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRLV 73
Query: 354 KYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSDS 524
++M SGP+ A + + ++ R ++G T ++ P +IRG F + RN HGSDS
Sbjct: 74 EFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSDS 133
Query: 525 VKSAEKEISLWF 560
V SA +EI+ +F
Sbjct: 134 VVSASREIAAFF 145
>ref|XP_003132227.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 3 [Sus
scrofa].
Length = 186
Score = 67.4 bits (163), Expect = 9e-12
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +3
Query: 177 TFIAVKPDGVQRGLVGEII-KRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLV 353
T +KPD V L+ E I ++ F +V ++ L +E ++ Y + + R F+ LV
Sbjct: 14 TLALIKPDAVAHPLILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRLV 73
Query: 354 KYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSDS 524
++M SGP+ A + + ++ R ++G T ++ P +IRG F + RN HGSDS
Sbjct: 74 EFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSDS 133
Query: 525 VKSAEKEISLWF 560
V SA +EI+ +F
Sbjct: 134 VVSASREIAAFF 145
>ref|XP_003132226.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 2 [Sus
scrofa].
Length = 186
Score = 67.4 bits (163), Expect = 9e-12
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +3
Query: 177 TFIAVKPDGVQRGLVGEII-KRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLV 353
T +KPD V L+ E I ++ F +V ++ L +E ++ Y + + R F+ LV
Sbjct: 14 TLALIKPDAVAHPLILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRLV 73
Query: 354 KYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSDS 524
++M SGP+ A + + ++ R ++G T ++ P +IRG F + RN HGSDS
Sbjct: 74 EFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSDS 133
Query: 525 VKSAEKEISLWF 560
V SA +EI+ +F
Sbjct: 134 VVSASREIAAFF 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,746,639
Number of extensions: 573675
Number of successful extensions: 2647
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2625
Number of HSP's successfully gapped: 14
Length of query: 268
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,928,923
Effective search space: 1526845833
Effective search space used: 1526845833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013104
(805 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070997.1| nucleoside diphosphate kinase B [Mus musculu... 291 5e-79
Alignment gi|NP_032731.1| nucleoside diphosphate kinase B [Mus musculus]. 291 5e-79
Alignment gi|XP_485703.2| PREDICTED: nucleoside diphosphate kinase B-like... 288 3e-78
Alignment gi|XP_980967.1| PREDICTED: nucleoside diphosphate kinase B-like... 288 3e-78
Alignment gi|NP_032730.1| nucleoside diphosphate kinase A [Mus musculus]. 288 3e-78
Alignment gi|NP_062704.2| nucleoside diphosphate kinase 3 [Mus musculus]. 215 4e-56
Alignment gi|XP_001478949.1| PREDICTED: nucleoside diphosphate kinase B-l... 207 6e-54
Alignment gi|XP_143595.5| PREDICTED: nucleoside diphosphate kinase B-like... 197 8e-51
Alignment gi|NP_062705.1| nucleoside diphosphate kinase, mitochondrial pr... 180 1e-45
Alignment gi|NP_835172.1| nucleoside diphosphate kinase 7 isoform 2 [Mus ... 74 1e-13
>ref|NP_001070997.1| nucleoside diphosphate kinase B [Mus musculus].
Length = 152
Score = 291 bits (744), Expect = 5e-79
Identities = 139/152 (91%), Positives = 147/152 (96%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYIDLKDRPF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI LWFKPEEL++YKSCA DW+YE
Sbjct: 121 DSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152
>ref|NP_032731.1| nucleoside diphosphate kinase B [Mus musculus].
Length = 152
Score = 291 bits (744), Expect = 5e-79
Identities = 139/152 (91%), Positives = 147/152 (96%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYIDLKDRPF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI LWFKPEEL++YKSCA DW+YE
Sbjct: 121 DSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152
>ref|XP_485703.2| PREDICTED: nucleoside diphosphate kinase B-like [Mus musculus].
Length = 181
Score = 288 bits (738), Expect = 3e-78
Identities = 140/158 (88%), Positives = 148/158 (93%)
Frame = +3
Query: 141 PPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYID 320
P S RTMA+ E TFIA+KPDGVQRGLVGEIIKRFEQKGF LVA+KFLQASEE LKQHYID
Sbjct: 24 PTSFRTMANLECTFIAIKPDGVQRGLVGEIIKRFEQKGFHLVAMKFLQASEEHLKQHYID 83
Query: 321 LKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 500
LK RPFFPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR
Sbjct: 84 LKVRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 143
Query: 501 NIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
NIIHGSDSV+SAEKE+ LWFKPEEL++YKSCA DW+YE
Sbjct: 144 NIIHGSDSVESAEKEMHLWFKPEELMDYKSCAHDWVYE 181
>ref|XP_980967.1| PREDICTED: nucleoside diphosphate kinase B-like [Mus musculus].
Length = 181
Score = 288 bits (738), Expect = 3e-78
Identities = 140/158 (88%), Positives = 148/158 (93%)
Frame = +3
Query: 141 PPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYID 320
P S RTMA+ E TFIA+KPDGVQRGLVGEIIKRFEQKGF LVA+KFLQASEE LKQHYID
Sbjct: 24 PTSFRTMANLECTFIAIKPDGVQRGLVGEIIKRFEQKGFHLVAMKFLQASEEHLKQHYID 83
Query: 321 LKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 500
LK RPFFPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR
Sbjct: 84 LKVRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 143
Query: 501 NIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
NIIHGSDSV+SAEKE+ LWFKPEEL++YKSCA DW+YE
Sbjct: 144 NIIHGSDSVESAEKEMHLWFKPEELMDYKSCAHDWVYE 181
>ref|NP_032730.1| nucleoside diphosphate kinase A [Mus musculus].
Length = 152
Score = 288 bits (737), Expect = 3e-78
Identities = 140/152 (92%), Positives = 147/152 (96%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA++ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLV LKFLQASE+LLK+HY DLKDRPF
Sbjct: 1 MANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F GLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEISLWF+PEELVEYKSCA +WIYE
Sbjct: 121 DSVKSAEKEISLWFQPEELVEYKSCAQNWIYE 152
>ref|NP_062704.2| nucleoside diphosphate kinase 3 [Mus musculus].
Length = 169
Score = 215 bits (547), Expect = 4e-56
Identities = 96/148 (64%), Positives = 128/148 (86%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
ERTF+AVKPDGVQR LVGEI++RFE+KGF+LVALK +QASEELL++HY++L+++PF+ L
Sbjct: 22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRL 81
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 530
VKYM SGPVVAMVW+GL+VV R ++G T+P D+ PGTIRGDFC++VG+N+IHGSDSV+
Sbjct: 82 VKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHGSDSVE 141
Query: 531 SAEKEISLWFKPEELVEYKSCAFDWIYE 614
SA +EI+LWF+ EL+ ++ A W+YE
Sbjct: 142 SAHREIALWFREAELLCWEDSAGHWLYE 169
>ref|XP_001478949.1| PREDICTED: nucleoside diphosphate kinase B-like [Mus musculus].
Length = 178
Score = 207 bits (528), Expect = 6e-54
Identities = 104/153 (67%), Positives = 120/153 (78%)
Frame = +3
Query: 156 TMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRP 335
T+A + FIA+K DGVQ GLVG IIK F++K F A+KFL ASEE LKQ Y+D KD P
Sbjct: 20 TLASLKHNFIAIKLDGVQHGLVGGIIKHFKEKRFCPTAVKFLWASEEHLKQRYVDWKDHP 79
Query: 336 FFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 515
FFPGL+K++ SGP+ AMVWEGLN+VK GRVML ETNPADSKPGTIRG+ CIQ GRNI +
Sbjct: 80 FFPGLLKHLNSGPIGAMVWEGLNLVKRGRVMLRETNPADSKPGTIRGESCIQGGRNITYS 139
Query: 516 SDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
SDSV+ SLWFKPEELV+YKSCA DW YE
Sbjct: 140 SDSVE------SLWFKPEELVDYKSCAHDWGYE 166
>ref|XP_143595.5| PREDICTED: nucleoside diphosphate kinase B-like [Mus musculus].
Length = 203
Score = 197 bits (501), Expect = 8e-51
Identities = 103/153 (67%), Positives = 119/153 (77%)
Frame = +3
Query: 156 TMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRP 335
T+A + TFIA+K DGVQ GLVG IIKRF++K F L+A+KFL ASEE LKQ Y+D KD P
Sbjct: 45 TLASLKHTFIAIKFDGVQHGLVGGIIKRFKEKRFCLMAVKFLWASEEHLKQRYVDWKDHP 104
Query: 336 FFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 515
FFPG +K++ SG + AMVWEGLN+VK GRVML ETNPA SKPGTIRG+ CIQ GRNI G
Sbjct: 105 FFPGPLKHLNSGHIGAMVWEGLNLVKRGRVMLRETNPAYSKPGTIRGESCIQGGRNITCG 164
Query: 516 SDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
SDSV+ SLWFK EELV+YKS A DW YE
Sbjct: 165 SDSVE------SLWFKSEELVDYKSRAHDWGYE 191
>ref|NP_062705.1| nucleoside diphosphate kinase, mitochondrial precursor [Mus
musculus].
Length = 186
Score = 180 bits (457), Expect = 1e-45
Identities = 81/138 (58%), Positives = 106/138 (76%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
ERT +AVKPDGVQR LVG +I+RFE++GF+LV +K LQA E +L +HY DL+ +PF+P L
Sbjct: 37 ERTLVAVKPDGVQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPAL 96
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 530
+ YM SGPVVAMVWEG NVV R M+G T+ ++ PGTIRGDF + + RN+IH SDSV
Sbjct: 97 ISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEAAPGTIRGDFSVHISRNVIHASDSVD 156
Query: 531 SAEKEISLWFKPEELVEY 584
A++EI LWF+ EL+ +
Sbjct: 157 GAQREIELWFQSSELLNW 174
>ref|NP_835172.1| nucleoside diphosphate kinase 7 isoform 2 [Mus musculus].
Length = 277
Score = 73.9 bits (180), Expect = 1e-13
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
E+T +KPD V + GEII+ + GF + L+ + + + ++D RPF+ L
Sbjct: 111 EKTLALIKPDAVSKA--GEIIEMINKSGFTITKLRMMTLTRKEAADFHVDHHSRPFYNEL 168
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 521
++++ SGPV+AM + + + +LG N S+ PG+IR F RN HG D
Sbjct: 169 IQFITSGPVIAMEILRDDAICEWKRLLGPANSGLSRTDAPGSIRALFGTDGVRNAAHGPD 228
Query: 522 SVKSAEKEISLWF 560
+ SA +E+ L+F
Sbjct: 229 TFASAAREMELFF 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,985,303
Number of extensions: 623199
Number of successful extensions: 3114
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3088
Number of HSP's successfully gapped: 14
Length of query: 268
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 168
Effective length of database: 12,613,959
Effective search space: 2119145112
Effective search space used: 2119145112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013104
(805 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018146.1| NME1-NME2 protein [Homo sapiens]. 300 1e-81
Alignment gi|NP_001018149.1| nucleoside diphosphate kinase B isoform a [H... 295 4e-80
Alignment gi|NP_002503.1| nucleoside diphosphate kinase B isoform a [Homo... 295 4e-80
Alignment gi|NP_001018147.1| nucleoside diphosphate kinase B isoform a [H... 295 4e-80
Alignment gi|NP_001018148.1| nucleoside diphosphate kinase B isoform a [H... 295 4e-80
Alignment gi|NP_937818.1| nucleoside diphosphate kinase A isoform a [Homo... 283 1e-76
Alignment gi|NP_000260.1| nucleoside diphosphate kinase A isoform b [Homo... 281 5e-76
Alignment gi|NP_002504.2| nucleoside diphosphate kinase 3 [Homo sapiens]. 224 5e-59
Alignment gi|NP_005000.1| nucleoside diphosphate kinase, mitochondrial pr... 187 1e-47
Alignment gi|NP_001185611.1| nucleoside diphosphate kinase B isoform b [H... 141 8e-34
>ref|NP_001018146.1| NME1-NME2 protein [Homo sapiens].
Length = 267
Score = 300 bits (767), Expect = 1e-81
Identities = 145/159 (91%), Positives = 151/159 (94%)
Frame = +3
Query: 138 CPPSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYI 317
C RTMA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYI
Sbjct: 109 CIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYI 168
Query: 318 DLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 497
DLKDRPFFPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG
Sbjct: 169 DLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVG 228
Query: 498 RNIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
RNIIHGSDSVKSAEKEISLWFKPEELV+YKSCA DW+YE
Sbjct: 229 RNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 267
Score = 216 bits (551), Expect = 1e-56
Identities = 104/116 (89%), Positives = 111/116 (95%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLV LKF+QASE+LLK+HY+DLKDRPF
Sbjct: 1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNI 506
F GLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR +
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTM 116
>ref|NP_001018149.1| nucleoside diphosphate kinase B isoform a [Homo sapiens].
Length = 152
Score = 295 bits (754), Expect = 4e-80
Identities = 142/152 (93%), Positives = 148/152 (97%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYIDLKDRPF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEISLWFKPEELV+YKSCA DW+YE
Sbjct: 121 DSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>ref|NP_002503.1| nucleoside diphosphate kinase B isoform a [Homo sapiens].
Length = 152
Score = 295 bits (754), Expect = 4e-80
Identities = 142/152 (93%), Positives = 148/152 (97%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYIDLKDRPF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEISLWFKPEELV+YKSCA DW+YE
Sbjct: 121 DSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>ref|NP_001018147.1| nucleoside diphosphate kinase B isoform a [Homo sapiens].
Length = 152
Score = 295 bits (754), Expect = 4e-80
Identities = 142/152 (93%), Positives = 148/152 (97%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYIDLKDRPF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEISLWFKPEELV+YKSCA DW+YE
Sbjct: 121 DSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>ref|NP_001018148.1| nucleoside diphosphate kinase B isoform a [Homo sapiens].
Length = 152
Score = 295 bits (754), Expect = 4e-80
Identities = 142/152 (93%), Positives = 148/152 (97%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYIDLKDRPF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
FPGLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSVKSAEKEISLWFKPEELV+YKSCA DW+YE
Sbjct: 121 DSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>ref|NP_937818.1| nucleoside diphosphate kinase A isoform a [Homo sapiens].
Length = 177
Score = 283 bits (724), Expect = 1e-76
Identities = 136/153 (88%), Positives = 145/153 (94%)
Frame = +3
Query: 156 TMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRP 335
TMA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLV LKF+QASE+LLK+HY+DLKDRP
Sbjct: 25 TMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRP 84
Query: 336 FFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 515
FF GLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG
Sbjct: 85 FFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHG 144
Query: 516 SDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
SDSV+SAEKEI LWF PEELV+Y SCA +WIYE
Sbjct: 145 SDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 177
>ref|NP_000260.1| nucleoside diphosphate kinase A isoform b [Homo sapiens].
Length = 152
Score = 281 bits (719), Expect = 5e-76
Identities = 135/152 (88%), Positives = 144/152 (94%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLV LKF+QASE+LLK+HY+DLKDRPF
Sbjct: 1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 518
F GLVKYM SGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 519 DSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
DSV+SAEKEI LWF PEELV+Y SCA +WIYE
Sbjct: 121 DSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>ref|NP_002504.2| nucleoside diphosphate kinase 3 [Homo sapiens].
Length = 169
Score = 224 bits (572), Expect = 5e-59
Identities = 105/157 (66%), Positives = 136/157 (86%)
Frame = +3
Query: 144 PSNRTMAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDL 323
P+ T AH ERTF+AVKPDGVQR LVGEI++RFE+KGF+LVALK +QASEELL++HY +L
Sbjct: 14 PAACTGAH-ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAEL 72
Query: 324 KDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRN 503
++RPF+ LVKYM SGPVVAMVW+GL+VV+T R ++G TNPAD+ PGTIRGDFCI+VG+N
Sbjct: 73 RERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKN 132
Query: 504 IIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 614
+IHGSDSV+SA +EI+LWF+ +EL+ ++ A W+YE
Sbjct: 133 LIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169
>ref|NP_005000.1| nucleoside diphosphate kinase, mitochondrial precursor [Homo
sapiens].
Length = 187
Score = 187 bits (474), Expect = 1e-47
Identities = 83/138 (60%), Positives = 110/138 (79%)
Frame = +3
Query: 171 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGL 350
ERT +AVKPDGVQR LVG++I+RFE++GF LV +K LQA E +L +HY DL+ +PF+P L
Sbjct: 38 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPAL 97
Query: 351 VKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 530
++YM SGPVVAMVWEG NVV+ R M+G T+ A++ PGTIRGDF + + RN+IH SDSV+
Sbjct: 98 IRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVE 157
Query: 531 SAEKEISLWFKPEELVEY 584
A++EI LWF+ ELV +
Sbjct: 158 GAQREIQLWFQSSELVSW 175
>ref|NP_001185611.1| nucleoside diphosphate kinase B isoform b [Homo sapiens].
Length = 82
Score = 141 bits (355), Expect = 8e-34
Identities = 69/76 (90%), Positives = 73/76 (96%)
Frame = +3
Query: 159 MAHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPF 338
MA+ ERTFIA+KPDGVQRGLVGEIIKRFEQKGFRLVA+KFL+ASEE LKQHYIDLKDRPF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 339 FPGLVKYMGSGPVVAM 386
FPGLVKYM SGPVVAM
Sbjct: 61 FPGLVKYMNSGPVVAM 76
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,222,585
Number of extensions: 743959
Number of successful extensions: 4079
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 19
Length of query: 268
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 167
Effective length of database: 14,967,800
Effective search space: 2499622600
Effective search space used: 2499622600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013104
(805 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 502 e-139
Sscrofa_Chr04 353 9e-95
gb|GL895991.2| Sus scrofa unplaced genomic scaffold ChrUScaf3875 347 6e-93
Sscrofa_Chr01 113 2e-22
Sscrofa_Chr06 70 2e-09
>Sscrofa_Chr12
|| Length = 63588571
Score = 502 bits (253), Expect = e-139
Identities = 253/253 (100%)
Strand = Plus / Plus
Query: 498 aggaacatcattcatggcagtgattcagtaaaaagcgctgagaaagaaatcagcctgtgg 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513129 aggaacatcattcatggcagtgattcagtaaaaagcgctgagaaagaaatcagcctgtgg 27513188
Query: 558 tttaagcccgaagagttggttgagtacaagtcttgtgcttttgactggatctatgaataa 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513189 tttaagcccgaagagttggttgagtacaagtcttgtgcttttgactggatctatgaataa 27513248
Query: 618 gaggtggacagagcattggtcccctttggcacggcttgatgtgtcctgagacacagctct 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513249 gaggtggacagagcattggtcccctttggcacggcttgatgtgtcctgagacacagctct 27513308
Query: 678 tcattccatggacttggaagcagtaggatgggtcttccctgaggcgtatttaccaataaa 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27513309 tcattccatggacttggaagcagtaggatgggtcttccctgaggcgtatttaccaataaa 27513368
Query: 738 gcctttaaaaact 750
|||||||||||||
Sbjct: 27513369 gcctttaaaaact 27513381
Score = 303 bits (153), Expect = 8e-80
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 3 cggccgcctcccgcctcgcgggttgggcggcgggccgtccggggtgtggccgcggtgggc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27507399 cggccgcctcccgcctcgcgggttgggcggcgggccgtccggggtgtggccgcggtgggc 27507458
Query: 63 ccctcctccgcgggctccaggccgcgggggtccctccgctctcaggtctccgctcacttc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27507459 ccctcctccgcgggctccaggccgcgggggtccctccgctctcaggtctccgctcacttc 27507518
Query: 123 tccaccgctgctcgctgcccgccctccaaccgg 155
|||||||||||||||||||||||||||||||||
Sbjct: 27507519 tccaccgctgctcgctgcccgccctccaaccgg 27507551
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 154 ggaccatggcccacgcggagcgcaccttcatcgcggtcaagccggacggcgtccagcgcg 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27507881 ggaccatggcccacgcggagcgcaccttcatcgcggtcaagccggacggcgtccagcgcg 27507940
Query: 214 gtctcgtgggcgagatcatcaagcgcttcgagcagaagggattccgcctcgttgccttga 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27507941 gtctcgtgggcgagatcatcaagcgcttcgagcagaagggattccgcctcgttgccttga 27508000
Query: 274 agttccttcagg 285
||||||||||||
Sbjct: 27508001 agttccttcagg 27508012
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 386 ggtctgggaggggctgaatgtagtgaagacaggccgagtgatgcttggagagaccaaccc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27511972 ggtctgggaggggctgaatgtagtgaagacaggccgagtgatgcttggagagaccaaccc 27512031
Query: 446 agcggattctaagccaggcaccattcgcggggacttctgcattcaggttggcagg 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27512032 agcggattctaagccaggcaccattcgcggggacttctgcattcaggttggcagg 27512086
Score = 212 bits (107), Expect = 2e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 282 caggcctctgaggaactcctgaagcagcactacattgacctgaaagaccggcccttcttc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27509060 caggcctctgaggaactcctgaagcagcactacattgacctgaaagaccggcccttcttc 27509119
Query: 342 ccgggactggtgaagtacatgggctcagggccagttgtggcgatggt 388
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27509120 ccgggactggtgaagtacatgggctcagggccagttgtggcgatggt 27509166
Score = 127 bits (64), Expect = 1e-26
Identities = 94/104 (90%)
Strand = Plus / Plus
Query: 171 gagcgcaccttcatcgcggtcaagccggacggcgtccagcgcggtctcgtgggcgagatc 230
|||||||||||||| || ||||||| || || ||||||||||| |||||||||||||||
Sbjct: 27494709 gagcgcaccttcattgccatcaagcccgatggggtccagcgcggcctcgtgggcgagatc 27494768
Query: 231 atcaagcgcttcgagcagaagggattccgcctcgttgccttgaa 274
|||||||| || ||||||||||||||||||||||||||| ||||
Sbjct: 27494769 atcaagcgttttgagcagaagggattccgcctcgttgccatgaa 27494812
Score = 109 bits (55), Expect = 2e-21
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 386 ggtctgggaggggctgaatgtagtgaagacaggccgagtgatgcttggagagaccaaccc 445
||||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct: 27502011 ggtctgggaagggctgaatgttgtaaagacaggtcgagtgatgcttggggagaccaaccc 27502070
Query: 446 agcggattctaagccaggcaccattcgcggggacttctgcattcaggttggcagg 500
|| ||||| ||||| || ||||| || |||||||||||||| || || ||||||
Sbjct: 27502071 tgcagattccaagcctgggaccatccgaggggacttctgcatccaagtcggcagg 27502125
>Sscrofa_Chr04
|| Length = 143465943
Score = 353 bits (178), Expect = 9e-95
Identities = 388/459 (84%), Gaps = 8/459 (1%)
Strand = Plus / Plus
Query: 300 ctgaagcagcactacattgacctgaaagaccggcccttcttcccgggactggtgaagtac 359
||||||||||||||||| |||||||||| | ||| ||||||||||| |||| ||||||
Sbjct: 42078714 ctgaagcagcactacatcgacctgaaagcacagccattcttcccggggctggagaagtat 42078773
Query: 360 atgggctcagggccagttgtggcgatggtct--------gggaggggctgaatgtagtga 411
||| |||| | |||||||| ||||||| |||||||| |||||| || ||
Sbjct: 42078774 atgagctccagagtggttgtggccatggtctcatggcctgggagggggtgaatgaaggga 42078833
Query: 412 agacaggccgagtgatgcttggagagaccaacccagcggattctaagccaggcaccattc 471
||| || ||| ||||||| |||| ||| ||||| ||||| ||||||||||||||||
Sbjct: 42078834 agatcgggtgagcaatgcttgaggagatcaatccagcagattcgaagccaggcaccattc 42078893
Query: 472 gcggggacttctgcattcaggttggcaggaacatcattcatggcagtgattcagtaaaaa 531
|||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct: 42078894 atcgggacttctgcattcaagttggcaggatcatcattcatagcagtgattcagtaaaaa 42078953
Query: 532 gcgctgagaaagaaatcagcctgtggtttaagcccgaagagttggttgagtacaagtctt 591
| | ||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 42078954 gttcggagaaagcaatgagcctgtggtttaagcccgaagaattggttgcctacaagtctt 42079013
Query: 592 gtgcttttgactggatctatgaataagaggtggacagagcattggtcccctttggcacgg 651
||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct: 42079014 gtgcttttgaccagatctatgaataagaggtggacagagcatcagtcccctttggccctg 42079073
Query: 652 cttgatgtgtcctgagacacagctcttcattccatggacttggaagcagtaggatgggtc 711
|||||||||| ||| ||||||||||||||||||| |||||||||| |||| ||||| ||
Sbjct: 42079074 cttgatgtgttctgggacacagctcttcattccactgacttggaagaagtaagatggatc 42079133
Query: 712 ttccctgaggcgtatttaccaataaagcctttaaaaact 750
|| ||| | || |||||||||||||||||||| ||||||
Sbjct: 42079134 tttcctaaagcatatttaccaataaagcctttgaaaact 42079172
>gb|GL895991.2| Sus scrofa unplaced genomic scaffold ChrUScaf3875
Length = 10916
Score = 347 bits (175), Expect = 6e-93
Identities = 319/367 (86%)
Strand = Plus / Minus
Query: 384 atggtctgggaggggctgaatgtagtgaagacaggccgagtgatgcttggagagaccaac 443
|||| |||||||||| |||||| || ||||| || ||| ||||||| |||| |||
Sbjct: 1463 atggcctgggagggggtgaatgaagggaagatcgggtgagcaatgcttgaggagatcaat 1404
Query: 444 ccagcggattctaagccaggcaccattcgcggggacttctgcattcaggttggcaggaac 503
||||| ||||| |||||||||||||||| |||||||||||||||| |||||||||| |
Sbjct: 1403 ccagcagattcgaagccaggcaccattcatcgggacttctgcattcaagttggcaggatc 1344
Query: 504 atcattcatggcagtgattcagtaaaaagcgctgagaaagaaatcagcctgtggtttaag 563
||||||||| ||||||||||||||||||| | ||||||| ||| |||||||||||||||
Sbjct: 1343 atcattcatagcagtgattcagtaaaaagttcggagaaagcaatgagcctgtggtttaag 1284
Query: 564 cccgaagagttggttgagtacaagtcttgtgcttttgactggatctatgaataagaggtg 623
|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1283 cccgaagaattggttgcctacaagtcttgtgcttttgaccagatctatgaataagaggtg 1224
Query: 624 gacagagcattggtcccctttggcacggcttgatgtgtcctgagacacagctcttcattc 683
|||||||||| |||||||||||| | ||||||||||| ||| |||||||||||||||||
Sbjct: 1223 gacagagcatcagtcccctttggccctgcttgatgtgttctgggacacagctcttcattc 1164
Query: 684 catggacttggaagcagtaggatgggtcttccctgaggcgtatttaccaataaagccttt 743
|| |||||||||| |||| ||||| |||| ||| | || ||||||||||||||||||||
Sbjct: 1163 cactgacttggaagaagtaagatggatctttcctaaagcatatttaccaataaagccttt 1104
Query: 744 aaaaact 750
||||||
Sbjct: 1103 gaaaact 1097
Score = 61.9 bits (31), Expect = 5e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 300 ctgaagcagcactacattgacctgaaagaccggcccttcttcccgggactggtgaagta 358
||||||||||||||||| |||||||||| | ||| ||||||||||| |||| ||||||
Sbjct: 1635 ctgaagcagcactacatcgacctgaaagcacagccattcttcccggggctggagaagta 1577
>Sscrofa_Chr01
|| Length = 315321322
Score = 113 bits (57), Expect = 2e-22
Identities = 157/189 (83%), Gaps = 1/189 (0%)
Strand = Plus / Minus
Query: 444 ccagcggattctaagccaggcaccattcgcggggacttctgcattcaggttggcaggaac 503
||||| |||||||||| |||||||||| | || |||||| |||||| ||| |||||||
Sbjct: 37677851 ccagcagattctaagctgggcaccattctcagg-acttctccattcaagttagcaggaat 37677793
Query: 504 atcattcatggcagtgattcagtaaaaagcgctgagaaagaaatcagcctgtggtttaag 563
|||||| ||| |||||||| |||||||| |||| ||||||| |||||| |||||||||
Sbjct: 37677792 atcatttgtggtagtgattctgtaaaaagtcctgaaaaagaaaccagcctttggtttaag 37677733
Query: 564 cccgaagagttggttgagtacaagtcttgtgcttttgactggatctatgaataagaggtg 623
| ||||| ||||||| | || ||||||||||| ||||||||| ||||| |||||||
Sbjct: 37677732 ctggaagaactggttgactgcatgtcttgtgcttatgactggattcatgaaaaagaggtt 37677673
Query: 624 gacagagca 632
|||| ||||
Sbjct: 37677672 gacaaagca 37677664
>Sscrofa_Chr06
|| Length = 157765593
Score = 69.9 bits (35), Expect = 2e-09
Identities = 150/187 (80%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 377 tgtggcgatggtctgggaggggctgaatgtagtgaagacaggccgagtgatgcttggaga 436
|||||| ||||||||| ||||||||||||| || ||||||| ||| ||||| ||| ||
Sbjct: 151213922 tgtggccatggtctgg-aggggctgaatgtggtatagacagggagagggatgcctgggga 151213980
Query: 437 gaccaacccagcggattctaagccaggcaccattcgcggggacttctgcattcaggttgg 496
|||| | ||||| || |||||| | |||| || | ||||| || |||||| | ||
Sbjct: 151213981 gacccatccagcagaatctaagtcgagcacgatatgaggggatgtcctcattcaaggcgg 151214040
Query: 497 caggaacatcattcatggcagtgattcagtaaaaagcgctgagaaagaaatcagcctgtg 556
|||||||||| ||||| ||||||||||||||||||| |||| | |||| ||||||| |
Sbjct: 151214041 caggaacatcgttcatagcagtgattcagtaaaaagagctggggaagacgtcagcctacg 151214100
Query: 557 gtttaag 563
|||||||
Sbjct: 151214101 gtttaag 151214107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,679,988
Number of extensions: 104
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 13
Length of query: 805
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 784
Effective length of database: 2,808,413,156
Effective search space: 2201795914304
Effective search space used: 2201795914304
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)