Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013105
(986 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852729.1| PREDICTED: similar to POU domain, class 2, tran... 456 e-128
Alignment gi|XP_541592.2| PREDICTED: similar to POU domain, class 2, tran... 456 e-128
Alignment gi|XP_866309.1| PREDICTED: similar to POU domain, class 2, tran... 411 e-115
Alignment gi|XP_866292.1| PREDICTED: similar to POU domain, class 2, tran... 411 e-115
Alignment gi|XP_866246.1| PREDICTED: similar to POU domain, class 2, tran... 394 e-110
Alignment gi|XP_866233.1| PREDICTED: similar to POU domain, class 2, tran... 394 e-110
Alignment gi|XP_866262.1| PREDICTED: similar to POU domain, class 2, tran... 391 e-109
Alignment gi|XP_866277.1| PREDICTED: similar to POU domain, class 2, tran... 390 e-108
Alignment gi|XP_862886.1| PREDICTED: similar to POU domain, class 2, tran... 182 3e-46
Alignment gi|XP_547481.2| PREDICTED: similar to POU domain, class 2, tran... 182 3e-46
>ref|XP_852729.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
(Octamer-binding transcription factor 2) (Oct-2) (OTF-2)
(Lymphoid-restricted immunoglobulin octamer binding
protein NF-A2) isoform 2 [Canis familiaris].
Length = 479
Score = 456 bits (1174), Expect = e-128
Identities = 232/295 (78%), Positives = 232/295 (78%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 180
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 181 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 240
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 241 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 295
>ref|XP_541592.2| PREDICTED: similar to POU domain, class 2, transcription factor 2
(Octamer-binding transcription factor 2) (Oct-2) (OTF-2)
(Lymphoid-restricted immunoglobulin octamer binding
protein NF-A2) isoform 1 [Canis familiaris].
Length = 467
Score = 456 bits (1174), Expect = e-128
Identities = 232/295 (78%), Positives = 232/295 (78%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 180
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 181 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 240
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 241 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 295
>ref|XP_866309.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 8 [Canis familiaris].
Length = 463
Score = 411 bits (1057), Expect = e-115
Identities = 216/295 (73%), Positives = 216/295 (73%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 279
>ref|XP_866292.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 7 [Canis familiaris].
Length = 400
Score = 411 bits (1057), Expect = e-115
Identities = 216/295 (73%), Positives = 216/295 (73%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 279
>ref|XP_866246.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 4 [Canis familiaris].
Length = 460
Score = 394 bits (1013), Expect = e-110
Identities = 210/295 (71%), Positives = 211/295 (71%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDA + GFDGLPG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAGETGL---GLPRRELSSPSLGFDGLPG 276
>ref|XP_866233.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 3 [Canis familiaris].
Length = 458
Score = 394 bits (1013), Expect = e-110
Identities = 210/295 (71%), Positives = 211/295 (71%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDA + GFDGLPG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAGETGL-----GPNQLSSPSLGFDGLPG 274
>ref|XP_866262.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 5 [Canis familiaris].
Length = 471
Score = 391 bits (1005), Expect = e-109
Identities = 210/303 (69%), Positives = 211/303 (69%), Gaps = 8/303 (2%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSV--------DXXXXXXXXXXXXXXGFDG 934
ISRFEALNLSFKNMCKLKPLLEKWLNDA + GFDG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAGETGLGLPRREVGGGPGRRPLMPPSPSLGFDG 284
Query: 935 LPG 943
LPG
Sbjct: 285 LPG 287
>ref|XP_866277.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 6 [Canis familiaris].
Length = 452
Score = 390 bits (1001), Expect = e-108
Identities = 203/268 (75%), Positives = 203/268 (75%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDA 862
ISRFEALNLSFKNMCKLKPLLEKWLNDA
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDA 252
>ref|XP_862886.1| PREDICTED: similar to POU domain, class 2, transcription factor 1
(Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
(NF-A1) isoform 9 [Canis familiaris].
Length = 744
Score = 182 bits (463), Expect = 3e-46
Identities = 106/163 (65%), Positives = 114/163 (69%), Gaps = 6/163 (3%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVT--RPTLPDPHLSHPQP---PKCLEP 628
GLL NL QLPQQ+Q LL SQP L +Q T R P + PQ PK ++
Sbjct: 217 GLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTPKRIDT 276
Query: 629 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 808
PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS
Sbjct: 277 PSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 335
Query: 809 FKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
FKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 336 FKNMCKLKPLLEKWLNDAENLSSDSGLSSPSALNSPGLGMEGL 378
>ref|XP_547481.2| PREDICTED: similar to POU domain, class 2, transcription factor 1
(Octamer-binding transcription factor 1) (Oct-1) (OTF-1)
(NF-A1) isoform 1 [Canis familiaris].
Length = 779
Score = 182 bits (463), Expect = 3e-46
Identities = 106/163 (65%), Positives = 114/163 (69%), Gaps = 6/163 (3%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVT--RPTLPDPHLSHPQP---PKCLEP 628
GLL NL QLPQQ+Q LL SQP L +Q T R P + PQ PK ++
Sbjct: 229 GLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTPKRIDT 288
Query: 629 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 808
PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS
Sbjct: 289 PSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 347
Query: 809 FKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
FKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 348 FKNMCKLKPLLEKWLNDAENLSSDSGLSSPSALNSPGLGMEGL 390
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,264,984
Number of extensions: 1001475
Number of successful extensions: 5186
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 5079
Number of HSP's successfully gapped: 27
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013105
(986 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069050.1| POU domain, class 2, transcription factor 1 ... 183 2e-46
Alignment gi|NP_001192759.1| POU domain, class 2, transcription factor 3 ... 181 1e-45
Alignment gi|XP_002693076.1| PREDICTED: PLA-1 protein-like [Bos taurus]. 181 1e-45
Alignment gi|NP_001073817.1| POU domain, class 3, transcription factor 2 ... 128 9e-30
Alignment gi|XP_001787898.1| PREDICTED: POU domain, class 3, transcriptio... 120 2e-27
Alignment gi|XP_002699986.1| PREDICTED: POU domain, class 3, transcriptio... 119 4e-27
Alignment gi|XP_589021.2| PREDICTED: POU domain, class 3, transcription f... 119 4e-27
Alignment gi|XP_002691240.1| PREDICTED: POU class 3 homeobox 3-like [Bos ... 118 7e-27
Alignment gi|NP_001098921.1| POU domain, class 3, transcription factor 1 ... 117 2e-26
Alignment gi|NP_777005.1| POU domain, class 5, transcription factor 1 [Bo... 114 1e-25
>ref|NP_001069050.1| POU domain, class 2, transcription factor 1 [Bos taurus].
Length = 730
Score = 183 bits (465), Expect = 2e-46
Identities = 106/163 (65%), Positives = 114/163 (69%), Gaps = 6/163 (3%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVT--RPTLPDPHLSHPQP---PKCLEP 628
GLL NL QLPQQ+Q LL SQP L +Q T R P + PQ PK ++
Sbjct: 229 GLLQAQNLLTQLPQQSQANLLQSQPSIALTSQPATPTRTIAATPIQTLPQSQATPKRIDT 288
Query: 629 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 808
PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS
Sbjct: 289 PSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 347
Query: 809 FKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
FKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 348 FKNMCKLKPLLEKWLNDAENLSSDSALSSPSALNSPGMGIEGL 390
>ref|NP_001192759.1| POU domain, class 2, transcription factor 3 [Bos taurus].
Length = 440
Score = 181 bits (458), Expect = 1e-45
Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 7/140 (5%)
Frame = +2
Query: 482 PNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLP----DPHLS---HPQPPKCLEPPSHP 640
PNL PQQ Q +LL Q GL +QAV RP LP +PHL H PK L
Sbjct: 128 PNLLPFPQQ-QSSLLLPQTGPGLTSQAVGRPGLPGSSLEPHLEASQHLPVPKHLPSAGGA 186
Query: 641 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 820
+EPSDLEELE+FA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 187 DEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 246
Query: 821 CKLKPLLEKWLNDAETMSVD 880
CKLKPLLEKWLNDAE+ D
Sbjct: 247 CKLKPLLEKWLNDAESSPSD 266
>ref|XP_002693076.1| PREDICTED: PLA-1 protein-like [Bos taurus].
Length = 440
Score = 181 bits (458), Expect = 1e-45
Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 7/140 (5%)
Frame = +2
Query: 482 PNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLP----DPHLS---HPQPPKCLEPPSHP 640
PNL PQQ Q +LL Q GL +QAV RP LP +PHL H PK L
Sbjct: 128 PNLLPFPQQ-QSSLLLPQTGPGLTSQAVGRPGLPGSSLEPHLEASQHLPVPKHLPSAGGA 186
Query: 641 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 820
+EPSDLEELE+FA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 187 DEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 246
Query: 821 CKLKPLLEKWLNDAETMSVD 880
CKLKPLLEKWLNDAE+ D
Sbjct: 247 CKLKPLLEKWLNDAESSPSD 266
>ref|NP_001073817.1| POU domain, class 3, transcription factor 2 [Bos taurus].
Length = 438
Score = 128 bits (321), Expect = 9e-30
Identities = 69/112 (61%), Positives = 77/112 (68%), Gaps = 14/112 (12%)
Frame = +2
Query: 581 PDPHLSH-----PQPPKCLEPPSHP---------EEPSDLEELEQFARTFKQRRIKLGFT 718
P PH SH P PP PP HP E+ ++LEQFA+ FKQRRIKLGFT
Sbjct: 224 PHPH-SHAHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFT 282
Query: 719 QGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMS 874
Q DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +A++ S
Sbjct: 283 QADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSS 334
>ref|XP_001787898.1| PREDICTED: POU domain, class 3, transcription factor 3-like [Bos
taurus].
Length = 828
Score = 120 bits (300), Expect = 2e-27
Identities = 64/113 (56%), Positives = 73/113 (64%), Gaps = 20/113 (17%)
Frame = +2
Query: 590 HLSHPQPPK---CLEPPSH-----------------PEEPSDLEELEQFARTFKQRRIKL 709
H +HP PP PP H E+ ++LEQFA+ FKQRRIKL
Sbjct: 605 HHAHPHPPHPHHAQGPPHHGGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIKL 664
Query: 710 GFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAET 868
GFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +A++
Sbjct: 665 GFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADS 717
>ref|XP_002699986.1| PREDICTED: POU domain, class 3, transcription factor 4-like [Bos
taurus].
Length = 363
Score = 119 bits (298), Expect = 4e-27
Identities = 58/76 (76%), Positives = 64/76 (84%)
Frame = +2
Query: 641 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 820
EE +ELEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 186 EETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 245
Query: 821 CKLKPLLEKWLNDAET 868
CKLKPLL KWL +A++
Sbjct: 246 CKLKPLLNKWLEEADS 261
>ref|XP_589021.2| PREDICTED: POU domain, class 3, transcription factor 4-like [Bos
taurus].
Length = 363
Score = 119 bits (298), Expect = 4e-27
Identities = 58/76 (76%), Positives = 64/76 (84%)
Frame = +2
Query: 641 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 820
EE +ELEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 186 EETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 245
Query: 821 CKLKPLLEKWLNDAET 868
CKLKPLL KWL +A++
Sbjct: 246 CKLKPLLNKWLEEADS 261
>ref|XP_002691240.1| PREDICTED: POU class 3 homeobox 3-like [Bos taurus].
Length = 649
Score = 118 bits (296), Expect = 7e-27
Identities = 57/80 (71%), Positives = 65/80 (81%)
Frame = +2
Query: 629 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 808
P E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LS
Sbjct: 459 PHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLS 518
Query: 809 FKNMCKLKPLLEKWLNDAET 868
FKNMCKLKPLL KWL +A++
Sbjct: 519 FKNMCKLKPLLNKWLEEADS 538
>ref|NP_001098921.1| POU domain, class 3, transcription factor 1 [Bos taurus].
Length = 451
Score = 117 bits (292), Expect = 2e-26
Identities = 56/78 (71%), Positives = 64/78 (82%)
Frame = +2
Query: 641 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 820
E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 247 EDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 306
Query: 821 CKLKPLLEKWLNDAETMS 874
CKLKPLL KWL + ++ S
Sbjct: 307 CKLKPLLNKWLEETDSSS 324
>ref|NP_777005.1| POU domain, class 5, transcription factor 1 [Bos taurus].
Length = 360
Score = 114 bits (285), Expect = 1e-25
Identities = 65/127 (51%), Positives = 83/127 (65%), Gaps = 10/127 (7%)
Frame = +2
Query: 515 GALLTSQPR--AGLPTQAVTRPTLPDPHLSHPQPPKC----LEPPSHPEEPSDLE----E 664
G L T QP AG ++ + PDP + PK LEP +PEE D++ +
Sbjct: 88 GGLETPQPEGEAGAGVESNSEGASPDPCAAPAGAPKLDKEKLEP--NPEESQDIKALQKD 145
Query: 665 LEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLE 844
LEQFA+ KQ+RI LG+TQ DVGL +G L+G FSQTTI RFEAL LSFKNMCKL+PLL+
Sbjct: 146 LEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLLQ 205
Query: 845 KWLNDAE 865
KW+ +A+
Sbjct: 206 KWVEEAD 212
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,667,948
Number of extensions: 967245
Number of successful extensions: 4917
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4800
Number of HSP's successfully gapped: 18
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013105
(986 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999205.1| POU domain, class 2, transcription factor 2 [Su... 448 e-126
Alignment gi|NP_999429.1| POU domain, class 2, transcription factor 1 [Su... 182 2e-46
Alignment gi|XP_003130003.2| PREDICTED: POU domain, class 2, transcriptio... 163 2e-40
Alignment gi|XP_001926276.1| PREDICTED: POU domain, class 3, transcriptio... 130 1e-30
Alignment gi|XP_001925801.1| PREDICTED: POU domain, class 3, transcriptio... 121 5e-28
Alignment gi|XP_003356366.1| PREDICTED: POU domain, class 3, transcriptio... 117 1e-26
Alignment gi|NP_001106531.1| POU domain, class 5, transcription factor 1 ... 111 5e-25
Alignment gi|NP_999328.1| pituitary-specific positive transcription facto... 100 9e-22
Alignment gi|XP_003124119.1| PREDICTED: POU domain, class 4, transcriptio... 82 5e-16
Alignment gi|XP_003129209.2| PREDICTED: POU domain, class 4, transcriptio... 77 1e-14
>ref|NP_999205.1| POU domain, class 2, transcription factor 2 [Sus scrofa].
Length = 478
Score = 448 bits (1153), Expect = e-126
Identities = 229/295 (77%), Positives = 229/295 (77%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTG QLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAGPPPPQAVQAHLSQVQLMLTGRQLAGDIQQILQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTL DPHLS
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLSDPHLS 180
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
HPQPPKCLEPPSHPEE SDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 181 HPQPPKCLEPPSHPEEASDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 240
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 241 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSRPSLGFDGLPG 295
>ref|NP_999429.1| POU domain, class 2, transcription factor 1 [Sus scrofa].
Length = 745
Score = 182 bits (462), Expect = 2e-46
Identities = 106/163 (65%), Positives = 114/163 (69%), Gaps = 6/163 (3%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVT--RPTLPDPHLSHPQP---PKCLEP 628
GLL NL QLPQQ+Q LL SQP L +Q T R P + PQ PK ++
Sbjct: 217 GLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTPKRIDT 276
Query: 629 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 808
PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS
Sbjct: 277 PSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 335
Query: 809 FKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
FKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 336 FKNMCKLKPLLEKWLNDAENLSSDSALCSPSALNSPGLGVEGL 378
>ref|XP_003130003.2| PREDICTED: POU domain, class 2, transcription factor 3 [Sus
scrofa].
Length = 305
Score = 163 bits (412), Expect = 2e-40
Identities = 90/126 (71%), Positives = 95/126 (75%), Gaps = 8/126 (6%)
Frame = +2
Query: 527 TSQPRAGL-PTQAVTRPTLP----DPHLS---HPQPPKCLEPPSHPEEPSDLEELEQFAR 682
TS R L P AV RP LP +PHL H K L +EPSDLEELE+FA+
Sbjct: 6 TSSTRGALDPVPAVGRPGLPGSSLEPHLEASQHLPVSKHLPSSGGADEPSDLEELEKFAK 65
Query: 683 TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDA 862
TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDA
Sbjct: 66 TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDA 125
Query: 863 ETMSVD 880
E+ D
Sbjct: 126 ESSPSD 131
>ref|XP_001926276.1| PREDICTED: POU domain, class 3, transcription factor 2 [Sus
scrofa].
Length = 442
Score = 130 bits (327), Expect = 1e-30
Identities = 66/105 (62%), Positives = 74/105 (70%), Gaps = 9/105 (8%)
Frame = +2
Query: 587 PHLSHPQPPKCLEPPSHP---------EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLA 739
PH P PP PP HP E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA
Sbjct: 234 PHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLA 293
Query: 740 MGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMS 874
+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +A++ S
Sbjct: 294 LGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSS 338
>ref|XP_001925801.1| PREDICTED: POU domain, class 3, transcription factor 4 [Sus
scrofa].
Length = 361
Score = 121 bits (304), Expect = 5e-28
Identities = 74/148 (50%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Frame = +2
Query: 467 GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLSHPQP--PKCLEPPSH- 637
G P PN + Q + SQP + P P + Q P EPP H
Sbjct: 115 GTSPAPNP-SITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPASASSQSLHPVLREPPDHG 173
Query: 638 -----------PEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTIS 784
EE +ELEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI
Sbjct: 174 DLGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC 233
Query: 785 RFEALNLSFKNMCKLKPLLEKWLNDAET 868
RFEAL LSFKNMCKLKPLL KWL +A++
Sbjct: 234 RFEALQLSFKNMCKLKPLLNKWLEEADS 261
>ref|XP_003356366.1| PREDICTED: POU domain, class 3, transcription factor 1 [Sus
scrofa].
Length = 411
Score = 117 bits (292), Expect = 1e-26
Identities = 56/78 (71%), Positives = 64/78 (82%)
Frame = +2
Query: 641 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 820
E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 207 EDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 266
Query: 821 CKLKPLLEKWLNDAETMS 874
CKLKPLL KWL + ++ S
Sbjct: 267 CKLKPLLNKWLEETDSSS 284
>ref|NP_001106531.1| POU domain, class 5, transcription factor 1 [Sus scrofa].
Length = 360
Score = 111 bits (278), Expect = 5e-25
Identities = 64/128 (50%), Positives = 83/128 (64%), Gaps = 10/128 (7%)
Frame = +2
Query: 512 QGALLTSQPR--AGLPTQAVTRPTLPDPHLSHPQPPKC----LEPPSHPEEPSDLE---- 661
QG L T QP AG ++ + P+P + K LEP +PEE D++
Sbjct: 87 QGGLETPQPEGEAGAGVESNSEGASPEPCAAPAGAAKLDKEKLEP--NPEESQDIKALQK 144
Query: 662 ELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLL 841
+LEQFA+ KQ+RI LG+TQ DVGL +G L+G FSQTTI RFEAL LSFKNMCKL+PLL
Sbjct: 145 DLEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSFKNMCKLRPLL 204
Query: 842 EKWLNDAE 865
+KW+ +A+
Sbjct: 205 QKWVEEAD 212
>ref|NP_999328.1| pituitary-specific positive transcription factor 1 [Sus scrofa].
Length = 291
Score = 100 bits (250), Expect = 9e-22
Identities = 58/129 (44%), Positives = 76/129 (58%)
Frame = +2
Query: 479 TPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLSHPQPPKCLEPPSHPEEPSDL 658
TP L++ P T + LP PT D + K +E P + P ++
Sbjct: 75 TPCLYKFPDHTLSHGFPPMHQPLLPED----PTAADFKQELRRKSKLVEEPIDMDSP-EI 129
Query: 659 EELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 838
ELE+FA FK RRIKLG+TQ +VG A+ ++G++FSQTTI RFE L LSFKN CKLK +
Sbjct: 130 RELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAI 189
Query: 839 LEKWLNDAE 865
L KWL +AE
Sbjct: 190 LSKWLEEAE 198
>ref|XP_003124119.1| PREDICTED: POU domain, class 4, transcription factor 3 [Sus
scrofa].
Length = 338
Score = 82.0 bits (201), Expect = 5e-16
Identities = 48/96 (50%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Frame = +2
Query: 593 LSHPQP--PKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLY---G 757
+SHP P P + SD ELE FA FKQRRIKLG TQ DVG A+ L
Sbjct: 161 MSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGV 220
Query: 758 NDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAE 865
SQ+TI RFE+L LS NM LKP+L+ WL +AE
Sbjct: 221 GSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAE 256
>ref|XP_003129209.2| PREDICTED: POU domain, class 4, transcription factor 2-like [Sus
scrofa].
Length = 265
Score = 77.4 bits (189), Expect = 1e-14
Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Frame = +2
Query: 629 PSHPEEPSDLE----ELEQFARTFKQRRIKLGFTQGDVGLAMGKLY---GNDFSQTTISR 787
PSH SD++ +LE FA FKQRRIKLG TQ DVG A+ L SQ+TI R
Sbjct: 98 PSHMGCMSDVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQSTICR 157
Query: 788 FEALNLSFKNMCKLKPLLEKWLNDAE 865
FE+L LS NM LKP+L+ WL +AE
Sbjct: 158 FESLTLSHNNMIALKPILQAWLEEAE 183
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,461,850
Number of extensions: 629780
Number of successful extensions: 3168
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3101
Number of HSP's successfully gapped: 12
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013105
(986 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035268.2| POU domain, class 2, transcription factor 2 iso... 449 e-126
Alignment gi|NP_001157028.1| POU domain, class 2, transcription factor 2 ... 405 e-113
Alignment gi|NP_001157026.1| POU domain, class 2, transcription factor 2 ... 405 e-113
Alignment gi|NP_001157027.1| POU domain, class 2, transcription factor 2 ... 392 e-109
Alignment gi|NP_035269.2| POU domain, class 2, transcription factor 3 [Mu... 185 5e-47
Alignment gi|NP_945151.2| POU domain, class 2, transcription factor 1 iso... 177 1e-44
Alignment gi|NP_945152.2| POU domain, class 2, transcription factor 1 iso... 177 1e-44
Alignment gi|NP_945150.2| POU domain, class 2, transcription factor 1 iso... 177 1e-44
Alignment gi|NP_035267.2| POU domain, class 2, transcription factor 1 iso... 177 1e-44
Alignment gi|NP_032925.1| POU domain, class 3, transcription factor 2 [Mu... 130 2e-30
>ref|NP_035268.2| POU domain, class 2, transcription factor 2 isoform 2 [Mus
musculus].
Length = 479
Score = 449 bits (1154), Expect = e-126
Identities = 228/295 (77%), Positives = 229/295 (77%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQ LDSPSEHTDTERNGPD NHQNPQNK SPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQSLDSPSEHTDTERNGPDINHQNPQNKASPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQA+TRPTLPDPHLS
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAMTRPTLPDPHLS 180
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 181 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 240
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 241 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 295
>ref|NP_001157028.1| POU domain, class 2, transcription factor 2 isoform 1 [Mus
musculus].
Length = 463
Score = 405 bits (1040), Expect = e-113
Identities = 213/295 (72%), Positives = 213/295 (72%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQ LDSPSEHTDTERNGPD NHQNPQNK SPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQSLDSPSEHTDTERNGPDINHQNPQNKASPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 279
>ref|NP_001157026.1| POU domain, class 2, transcription factor 2 isoform 4 [Mus
musculus].
Length = 583
Score = 405 bits (1040), Expect = e-113
Identities = 213/295 (72%), Positives = 213/295 (72%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQ LDSPSEHTDTERNGPD NHQNPQNK SPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQSLDSPSEHTDTERNGPDINHQNPQNKASPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 279
>ref|NP_001157027.1| POU domain, class 2, transcription factor 2 isoform 3 [Mus
musculus].
Length = 485
Score = 392 bits (1007), Expect = e-109
Identities = 213/317 (67%), Positives = 213/317 (67%), Gaps = 22/317 (6%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQ LDSPSEHTDTERNGPD NHQNPQNK SPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQSLDSPSEHTDTERNGPDINHQNPQNKASPFSVSPTGPS 60
Query: 239 TK----------------------IKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQ 352
TK IKAEDPSGDS MLTGSQ
Sbjct: 61 TKVGILSGLHLTFWGPGPCLSPPQIKAEDPSGDSAPAAPPPPQPAQPHLPQAQLMLTGSQ 120
Query: 353 LAGDIXXXXXXXXXXXXPGHHXXXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTS 532
LAGDI PGHH GLLPTPNLFQLPQQTQGALLTS
Sbjct: 121 LAGDIQQLLQLQQLVLVPGHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTS 180
Query: 533 QPRAGLPTQAVTRPTLPDPHLSHPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLG 712
QPRAGLPTQ PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLG
Sbjct: 181 QPRAGLPTQ----------------PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLG 224
Query: 713 FTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXX 892
FTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD
Sbjct: 225 FTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLP 284
Query: 893 XXXXXXXXXXGFDGLPG 943
GFDGLPG
Sbjct: 285 SPNQLSSPSLGFDGLPG 301
>ref|NP_035269.2| POU domain, class 2, transcription factor 3 [Mus musculus].
Length = 431
Score = 185 bits (469), Expect = 5e-47
Identities = 109/189 (57%), Positives = 121/189 (64%), Gaps = 7/189 (3%)
Frame = +2
Query: 335 MLTGSQLAGDIXXXXXXXXXXXXPGHHXXXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQ 514
M+ G+Q++GD+ PGH GL PNL PQQ Q
Sbjct: 71 MMPGNQMSGDMASLHPLQQLVLVPGH-LQSVSQFLLSQTPPGQQGL--QPNLLSFPQQ-Q 126
Query: 515 GALLTSQPRAGLPTQAVTRPTLP----DPHLSHPQP---PKCLEPPSHPEEPSDLEELEQ 673
LL Q GL +QAV RP L +PHL PQ PK L P +EP+DLEELE+
Sbjct: 127 STLLLPQTGPGLASQAVGRPGLSGSSLEPHLDAPQHLPGPKHLPGPGGNDEPTDLEELEK 186
Query: 674 FARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWL 853
FA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWL
Sbjct: 187 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWL 246
Query: 854 NDAETMSVD 880
NDAE+ D
Sbjct: 247 NDAESSPSD 255
>ref|NP_945151.2| POU domain, class 2, transcription factor 1 isoform L [Mus
musculus].
Length = 758
Score = 177 bits (448), Expect = 1e-44
Identities = 104/167 (62%), Positives = 112/167 (67%), Gaps = 10/167 (5%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVTRP---------TLPDPHLSHPQPPK 616
GLL NL QLPQQ+Q LL QP L +Q T TLP + PK
Sbjct: 230 GLLQAQNLLTQLPQQSQANLLQPQPSITLTSQPTTPTRTIAAASVQTLPQSQST----PK 285
Query: 617 CLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 796
++ PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA
Sbjct: 286 RIDTPSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 344
Query: 797 LNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
LNLSFKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 345 LNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGL 391
>ref|NP_945152.2| POU domain, class 2, transcription factor 1 isoform B [Mus
musculus].
Length = 782
Score = 177 bits (448), Expect = 1e-44
Identities = 104/167 (62%), Positives = 112/167 (67%), Gaps = 10/167 (5%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVTRP---------TLPDPHLSHPQPPK 616
GLL NL QLPQQ+Q LL QP L +Q T TLP + PK
Sbjct: 230 GLLQAQNLLTQLPQQSQANLLQPQPSITLTSQPTTPTRTIAAASVQTLPQSQST----PK 285
Query: 617 CLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 796
++ PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA
Sbjct: 286 RIDTPSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 344
Query: 797 LNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
LNLSFKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 345 LNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGL 391
>ref|NP_945150.2| POU domain, class 2, transcription factor 1 isoform Z [Mus
musculus].
Length = 769
Score = 177 bits (448), Expect = 1e-44
Identities = 104/167 (62%), Positives = 112/167 (67%), Gaps = 10/167 (5%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVTRP---------TLPDPHLSHPQPPK 616
GLL NL QLPQQ+Q LL QP L +Q T TLP + PK
Sbjct: 241 GLLQAQNLLTQLPQQSQANLLQPQPSITLTSQPTTPTRTIAAASVQTLPQSQST----PK 296
Query: 617 CLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 796
++ PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA
Sbjct: 297 RIDTPSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 355
Query: 797 LNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
LNLSFKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 356 LNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGL 402
>ref|NP_035267.2| POU domain, class 2, transcription factor 1 isoform A [Mus
musculus].
Length = 793
Score = 177 bits (448), Expect = 1e-44
Identities = 104/167 (62%), Positives = 112/167 (67%), Gaps = 10/167 (5%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVTRP---------TLPDPHLSHPQPPK 616
GLL NL QLPQQ+Q LL QP L +Q T TLP + PK
Sbjct: 241 GLLQAQNLLTQLPQQSQANLLQPQPSITLTSQPTTPTRTIAAASVQTLPQSQST----PK 296
Query: 617 CLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 796
++ PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA
Sbjct: 297 RIDTPSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 355
Query: 797 LNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGL 937
LNLSFKNMCKLKPLLEKWLNDAE +S D G +GL
Sbjct: 356 LNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGL 402
>ref|NP_032925.1| POU domain, class 3, transcription factor 2 [Mus musculus].
Length = 445
Score = 130 bits (327), Expect = 2e-30
Identities = 66/105 (62%), Positives = 74/105 (70%), Gaps = 9/105 (8%)
Frame = +2
Query: 587 PHLSHPQPPKCLEPPSHP---------EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLA 739
PH P PP PP HP E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA
Sbjct: 237 PHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLA 296
Query: 740 MGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMS 874
+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +A++ S
Sbjct: 297 LGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSS 341
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,606,916
Number of extensions: 793698
Number of successful extensions: 4095
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4010
Number of HSP's successfully gapped: 20
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013105
(986 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193955.1| POU domain, class 2, transcription factor 2 ... 456 e-128
Alignment gi|NP_001193954.1| POU domain, class 2, transcription factor 2 ... 456 e-128
Alignment gi|NP_002689.1| POU domain, class 2, transcription factor 2 iso... 411 e-115
Alignment gi|NP_001185715.1| POU domain, class 2, transcription factor 1 ... 182 4e-46
Alignment gi|NP_001185712.1| POU domain, class 2, transcription factor 1 ... 181 9e-46
Alignment gi|NP_002688.3| POU domain, class 2, transcription factor 1 iso... 181 9e-46
Alignment gi|NP_055167.2| POU domain, class 2, transcription factor 3 [Ho... 176 2e-44
Alignment gi|NP_005595.2| POU domain, class 3, transcription factor 2 [Ho... 130 2e-30
Alignment gi|NP_000298.2| POU domain, class 3, transcription factor 4 [Ho... 120 2e-27
Alignment gi|NP_006227.1| POU domain, class 3, transcription factor 3 [Ho... 119 3e-27
>ref|NP_001193955.1| POU domain, class 2, transcription factor 2 isoform 3 [Homo
sapiens].
Length = 467
Score = 456 bits (1174), Expect = e-128
Identities = 232/295 (78%), Positives = 232/295 (78%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 180
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 181 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 240
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 241 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 295
>ref|NP_001193954.1| POU domain, class 2, transcription factor 2 isoform 1 [Homo
sapiens].
Length = 479
Score = 456 bits (1174), Expect = e-128
Identities = 232/295 (78%), Positives = 232/295 (78%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 180
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 181 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 240
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 241 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 295
>ref|NP_002689.1| POU domain, class 2, transcription factor 2 isoform 2 [Homo
sapiens].
Length = 463
Score = 411 bits (1057), Expect = e-115
Identities = 216/295 (73%), Positives = 216/295 (73%)
Frame = +2
Query: 59 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 238
MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS
Sbjct: 1 MVHSSMGAPEIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNPQNKTSPFSVSPTGPS 60
Query: 239 TKIKAEDPSGDSXXXXXXXXXXXXXXXXXXXXMLTGSQLAGDIXXXXXXXXXXXXPGHHX 418
TKIKAEDPSGDS MLTGSQLAGDI PGHH
Sbjct: 61 TKIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 419 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLS 598
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ------------- 167
Query: 599 HPQPPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 778
PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT
Sbjct: 168 ---PPKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 224
Query: 779 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDXXXXXXXXXXXXXXGFDGLPG 943
ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVD GFDGLPG
Sbjct: 225 ISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPG 279
>ref|NP_001185715.1| POU domain, class 2, transcription factor 1 isoform 3 [Homo
sapiens].
Length = 703
Score = 182 bits (462), Expect = 4e-46
Identities = 135/316 (42%), Positives = 156/316 (49%), Gaps = 38/316 (12%)
Frame = +2
Query: 47 GAGSMVHSSMGAP---EIRMSKPLEAEKQGLDSPSEHTDTERNGPDTNHQNP-------- 193
GA S SS A + RM+ P E K ++S +T T+ NG D Q
Sbjct: 5 GAASQDESSAAAAAAADSRMNNPSETSKPSMESGDGNTGTQTNGLDFQKQPVPVGGAIST 64
Query: 194 -----------QNKTSPFSVSPTGPSTKI--KAEDPSGDSXXXXXXXXXXXXXXXXXXXX 334
Q + + S+ S + K+ + SGDS
Sbjct: 65 AQAQAFLGHLHQVQLAGTSLQAAAQSLNVQSKSNEESGDSQQPSQPSQQPSVQAAIPQTQ 124
Query: 335 -MLTGSQLAGDIXXXXXXXXXXXXPGHHXXXXXXXXXXXXXXXXX-------GLLPTPNL 490
ML G Q+ GD+ GLL NL
Sbjct: 125 LMLAGGQITGDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQGLLQAQNL 184
Query: 491 F-QLPQQTQGALLTSQPRAGLPTQAVT--RPTLPDPHLSHPQP---PKCLEPPSHPEEPS 652
QLPQQ+Q LL SQP L +Q T R P + PQ PK ++ PS EEPS
Sbjct: 185 LTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTPKRIDTPSL-EEPS 243
Query: 653 DLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 832
DLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK
Sbjct: 244 DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 303
Query: 833 PLLEKWLNDAETMSVD 880
PLLEKWLNDAE +S D
Sbjct: 304 PLLEKWLNDAENLSSD 319
>ref|NP_001185712.1| POU domain, class 2, transcription factor 1 isoform 2 [Homo
sapiens].
Length = 755
Score = 181 bits (459), Expect = 9e-46
Identities = 103/144 (71%), Positives = 110/144 (76%), Gaps = 6/144 (4%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVT--RPTLPDPHLSHPQP---PKCLEP 628
GLL NL QLPQQ+Q LL SQP L +Q T R P + PQ PK ++
Sbjct: 229 GLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTPKRIDT 288
Query: 629 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 808
PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS
Sbjct: 289 PSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 347
Query: 809 FKNMCKLKPLLEKWLNDAETMSVD 880
FKNMCKLKPLLEKWLNDAE +S D
Sbjct: 348 FKNMCKLKPLLEKWLNDAENLSSD 371
>ref|NP_002688.3| POU domain, class 2, transcription factor 1 isoform 1 [Homo
sapiens].
Length = 766
Score = 181 bits (459), Expect = 9e-46
Identities = 103/144 (71%), Positives = 110/144 (76%), Gaps = 6/144 (4%)
Frame = +2
Query: 467 GLLPTPNLF-QLPQQTQGALLTSQPRAGLPTQAVT--RPTLPDPHLSHPQP---PKCLEP 628
GLL NL QLPQQ+Q LL SQP L +Q T R P + PQ PK ++
Sbjct: 240 GLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTPKRIDT 299
Query: 629 PSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 808
PS EEPSDLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS
Sbjct: 300 PSL-EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS 358
Query: 809 FKNMCKLKPLLEKWLNDAETMSVD 880
FKNMCKLKPLLEKWLNDAE +S D
Sbjct: 359 FKNMCKLKPLLEKWLNDAENLSSD 382
>ref|NP_055167.2| POU domain, class 2, transcription factor 3 [Homo sapiens].
Length = 436
Score = 176 bits (447), Expect = 2e-44
Identities = 97/140 (69%), Positives = 103/140 (73%), Gaps = 7/140 (5%)
Frame = +2
Query: 482 PNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLP----DPHLS---HPQPPKCLEPPSHP 640
PNL PQQ G LL Q GL +QA P LP +PHL H PK L
Sbjct: 124 PNLLPFPQQQSGLLLP-QTGPGLASQAFGHPGLPGSSLEPHLEASQHLPVPKHLPSSGGA 182
Query: 641 EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 820
+EPSDLEELE+FA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 183 DEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 242
Query: 821 CKLKPLLEKWLNDAETMSVD 880
CKLKPLLEKWLNDAE+ D
Sbjct: 243 CKLKPLLEKWLNDAESSPSD 262
>ref|NP_005595.2| POU domain, class 3, transcription factor 2 [Homo sapiens].
Length = 443
Score = 130 bits (327), Expect = 2e-30
Identities = 66/105 (62%), Positives = 74/105 (70%), Gaps = 9/105 (8%)
Frame = +2
Query: 587 PHLSHPQPPKCLEPPSHP---------EEPSDLEELEQFARTFKQRRIKLGFTQGDVGLA 739
PH P PP PP HP E+ ++LEQFA+ FKQRRIKLGFTQ DVGLA
Sbjct: 235 PHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLA 294
Query: 740 MGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAETMS 874
+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +A++ S
Sbjct: 295 LGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSS 339
>ref|NP_000298.2| POU domain, class 3, transcription factor 4 [Homo sapiens].
Length = 361
Score = 120 bits (301), Expect = 2e-27
Identities = 73/148 (49%), Positives = 83/148 (56%), Gaps = 14/148 (9%)
Frame = +2
Query: 467 GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRPTLPDPHLSHPQP--PKCLEPPSH- 637
G P PN + Q + SQP + P P + Q P EPP H
Sbjct: 115 GASPAPNP-SITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASAQSLHPVLREPPDHG 173
Query: 638 -----------PEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTIS 784
EE +ELEQFA+ FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI
Sbjct: 174 ELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTIC 233
Query: 785 RFEALNLSFKNMCKLKPLLEKWLNDAET 868
RFE L LSFKNMCKLKPLL KWL +A++
Sbjct: 234 RFEGLQLSFKNMCKLKPLLNKWLEEADS 261
>ref|NP_006227.1| POU domain, class 3, transcription factor 3 [Homo sapiens].
Length = 500
Score = 119 bits (299), Expect = 3e-27
Identities = 64/114 (56%), Positives = 73/114 (64%), Gaps = 21/114 (18%)
Frame = +2
Query: 590 HLSHPQPPK---CLEPPSH------------------PEEPSDLEELEQFARTFKQRRIK 706
H +HP PP PP H E+ ++LEQFA+ FKQRRIK
Sbjct: 276 HHAHPHPPHPHHAQGPPHHGGGGGGAGPGLNSHDPHSDEDTPTSDDLEQFAKQFKQRRIK 335
Query: 707 LGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAET 868
LGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +A++
Sbjct: 336 LGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADS 389
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,349,166
Number of extensions: 969236
Number of successful extensions: 5179
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5080
Number of HSP's successfully gapped: 23
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013105
(986 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 214 7e-53
Sscrofa_Chr09 141 8e-31
Sscrofa_Chr03 101 7e-19
Sscrofa_Chr04 72 6e-10
>Sscrofa_Chr06
|| Length = 157765593
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 361 ggacatacagcagctcctccagctccagcagctggtgcttgtgccgggtcaccacctcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867450 ggacatacagcagctcctccagctccagcagctggtgcttgtgccgggtcaccacctcca 45867509
Query: 421 gccacctgctcagttcctgctgccgcaggcccagcagagccagccagg 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867510 gccacctgctcagttcctgctgccgcaggcccagcagagccagccagg 45867557
Score = 161 bits (81), Expect = 9e-37
Identities = 107/120 (89%)
Strand = Plus / Minus
Query: 243 agatcaaggctgaagaccccagtggcgactcagccccagcagcannnnnnnnnnnnnagc 302
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 45853900 agatcaaggctgaagaccccagtggcgactcagccccagcagcacccccacccccccagc 45853841
Query: 303 cggctcagccgcatctgccccaggcccaactcatgttgacgggcagccagctagccgggg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45853840 cggctcagccgcatctgccccaggcccaactcatgttgacgggcagccagctagccgggg 45853781
Score = 105 bits (53), Expect = 5e-20
Identities = 125/149 (83%)
Strand = Plus / Minus
Query: 686 ttcaagcaacgccgcatcaagctgggcttcacgcagggtgacgtgggcctggccatgggc 745
|||||||| || ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 86798333 ttcaagcagcggcgcatcaagctgggcttcacgcaggccgacgtggggctggcgctgggc 86798274
Query: 746 aagctctacggcaacgacttcagccagacgaccatctctcgctttgaggccctcaacctg 805
| ||| ||||| |||| ||| ||||| ||||||| ||||| |||||||| | |||
Sbjct: 86798273 acgctgtacggtaacgtgttctcgcagaccaccatctgccgcttcgaggccctgcagctg 86798214
Query: 806 agcttcaagaatatgtgcaaactcaagcc 834
||||||||||| |||||||| ||||||||
Sbjct: 86798213 agcttcaagaacatgtgcaagctcaagcc 86798185
>Sscrofa_Chr09
|| Length = 153670197
Score = 141 bits (71), Expect = 8e-31
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 717 cgcagggtgacgtgggcctggccatgggcaagctctacggcaacgacttcagccagacga 776
||||||| |||||||| ||||| ||||| ||||| || ||||| |||||||||||||| |
Sbjct: 52616473 cgcagggagacgtggggctggcgatgggaaagctgtatggcaatgacttcagccagacta 52616414
Query: 777 ccatctctcgctttgaggccctcaacctgagcttcaagaatatgtgcaaactcaagcccc 836
||||||| | |||||||||||||| |||||||||||||| |||||||| ||||| || |
Sbjct: 52616413 ccatctcgagatttgaggccctcaatctgagcttcaagaacatgtgcaagctcaaaccac 52616354
Query: 837 tcctggagaagtggctcaacgacgcag 863
| |||||||||||||| ||||| ||||
Sbjct: 52616353 tgctggagaagtggctgaacgatgcag 52616327
Score = 69.9 bits (35), Expect = 3e-09
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 644 gagcccagtgacctggaggagctcgagcagttcgcccgtaccttcaagcaacgccgcatc 703
||||||||||||||||||||||| ||| |||| ||| ||||||||||| | |||||
Sbjct: 52616969 gagcccagtgacctggaggagctggagaagtttgccaagaccttcaagcagaggcgcatt 52616910
Query: 704 aagctgggcttcacgcagg 722
|||||||||||||| ||||
Sbjct: 52616909 aagctgggcttcacacagg 52616891
>Sscrofa_Chr03
|| Length = 144787322
Score = 101 bits (51), Expect = 7e-19
Identities = 138/167 (82%)
Strand = Plus / Plus
Query: 686 ttcaagcaacgccgcatcaagctgggcttcacgcagggtgacgtgggcctggccatgggc 745
||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 52014825 ttcaagcaacggcgcatcaagctgggcttcacgcaggccgacgtggggctggcgctgggc 52014884
Query: 746 aagctctacggcaacgacttcagccagacgaccatctctcgctttgaggccctcaacctg 805
| || || ||||||| ||| ||||| ||||||| ||||| ||||| || | |||
Sbjct: 52014885 actctgtatggcaacgtgttctcgcagaccaccatctgccgcttcgaggctctgcagctg 52014944
Query: 806 agcttcaagaatatgtgcaaactcaagcccctcctggagaagtggct 852
||||||||||| |||||||| |||||||| || ||| | ||||||||
Sbjct: 52014945 agcttcaagaacatgtgcaagctcaagccgctgctgaacaagtggct 52014991
>Sscrofa_Chr04
|| Length = 143465943
Score = 71.9 bits (36), Expect = 6e-10
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 761 gacttcagccagacgaccatctctcgctttgaggccctcaacctgagcttcaagaatatg 820
||||||||||| || ||||||||||| ||||| ||| | ||||| ||||| ||||| |||
Sbjct: 91300633 gacttcagccaaactaccatctctcgttttgaagccttgaacctcagctttaagaacatg 91300574
Query: 821 tgcaaactcaagcccctcctggagaagtggct 852
||||| | ||||| || ||||||||||||||
Sbjct: 91300573 tgcaagttaaagccacttctggagaagtggct 91300542
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,613,555
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 8
Length of query: 986
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 965
Effective length of database: 2,808,413,156
Effective search space: 2710118695540
Effective search space used: 2710118695540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)