Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013106
(1438 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,107,285
Number of extensions: 1486212
Number of successful extensions: 4762
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4738
Number of HSP's successfully gapped: 0
Length of query: 479
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,174,046
Effective search space: 5286919158
Effective search space used: 5286919158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013106
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013106
(1438 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866309.1| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
Alignment gi|XP_866292.1| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
Alignment gi|XP_866277.1| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
Alignment gi|XP_866262.1| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
Alignment gi|XP_866246.1| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
Alignment gi|XP_866233.1| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
Alignment gi|XP_852729.1| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
Alignment gi|XP_541592.2| PREDICTED: similar to POU domain, class 2, tran... 72 2e-12
>ref|XP_866309.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 8 [Canis familiaris].
Length = 463
Score = 71.6 bits (174), Expect = 2e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
>ref|XP_866292.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 7 [Canis familiaris].
Length = 400
Score = 71.6 bits (174), Expect = 2e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
>ref|XP_866277.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 6 [Canis familiaris].
Length = 452
Score = 71.6 bits (174), Expect = 2e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
>ref|XP_866262.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 5 [Canis familiaris].
Length = 471
Score = 71.6 bits (174), Expect = 2e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
>ref|XP_866246.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 4 [Canis familiaris].
Length = 460
Score = 71.6 bits (174), Expect = 2e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
>ref|XP_866233.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
isoform 3 [Canis familiaris].
Length = 458
Score = 71.6 bits (174), Expect = 2e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
>ref|XP_852729.1| PREDICTED: similar to POU domain, class 2, transcription factor 2
(Octamer-binding transcription factor 2) (Oct-2) (OTF-2)
(Lymphoid-restricted immunoglobulin octamer binding
protein NF-A2) isoform 2 [Canis familiaris].
Length = 479
Score = 71.6 bits (174), Expect = 2e-12
Identities = 47/112 (41%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQVSGPP 749
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ P
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRP 172
>ref|XP_541592.2| PREDICTED: similar to POU domain, class 2, transcription factor 2
(Octamer-binding transcription factor 2) (Oct-2) (OTF-2)
(Lymphoid-restricted immunoglobulin octamer binding
protein NF-A2) isoform 1 [Canis familiaris].
Length = 467
Score = 71.6 bits (174), Expect = 2e-12
Identities = 47/112 (41%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQVSGPP 749
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ P
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRP 172
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,424,501
Number of extensions: 1062298
Number of successful extensions: 4971
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4954
Number of HSP's successfully gapped: 8
Length of query: 479
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 372
Effective length of database: 15,307,552
Effective search space: 5694409344
Effective search space used: 5694409344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013106
(1438 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999205.1| POU domain, class 2, transcription factor 2 [Su... 72 1e-12
>ref|NP_999205.1| POU domain, class 2, transcription factor 2 [Sus scrofa].
Length = 478
Score = 71.6 bits (174), Expect = 1e-12
Identities = 47/112 (41%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAGPPPPQAVQAHLSQVQLMLTGRQLAGDIQQILQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQVSGPP 749
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ P
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRP 172
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,059,740
Number of extensions: 1672538
Number of successful extensions: 3081
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3070
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 376
Effective length of database: 8,779,541
Effective search space: 3301107416
Effective search space used: 3301107416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013106
(1438 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035268.2| POU domain, class 2, transcription factor 2 iso... 72 1e-12
Alignment gi|NP_001157028.1| POU domain, class 2, transcription factor 2 ... 72 1e-12
Alignment gi|NP_001157027.1| POU domain, class 2, transcription factor 2 ... 72 1e-12
Alignment gi|NP_001157026.1| POU domain, class 2, transcription factor 2 ... 72 1e-12
>ref|NP_035268.2| POU domain, class 2, transcription factor 2 isoform 2 [Mus
musculus].
Length = 479
Score = 72.0 bits (175), Expect = 1e-12
Identities = 47/112 (41%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQVSGPP 749
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ P
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAMTRP 172
>ref|NP_001157028.1| POU domain, class 2, transcription factor 2 isoform 1 [Mus
musculus].
Length = 463
Score = 71.6 bits (174), Expect = 1e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
>ref|NP_001157027.1| POU domain, class 2, transcription factor 2 isoform 3 [Mus
musculus].
Length = 485
Score = 71.6 bits (174), Expect = 1e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 85 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 142
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 143 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 202
Query: 762 GQD 770
D
Sbjct: 203 PSD 205
>ref|NP_001157026.1| POU domain, class 2, transcription factor 2 isoform 4 [Mus
musculus].
Length = 583
Score = 71.6 bits (174), Expect = 1e-12
Identities = 49/123 (39%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Frame = +3
Query: 474 MQREEPGQDSGFVPAHSPPCQ--------------------DIXXXXXXXXXXXXPGHHX 593
++ E+P DS PA PP Q DI PGHH
Sbjct: 63 IKAEDPSGDSA--PAAPPPPQPAQPHLPQAQLMLTGSQLAGDIQQLLQLQQLVLVPGHHL 120
Query: 594 XXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGPPHSHR 761
GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P H
Sbjct: 121 QPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPPSHPEE 180
Query: 762 GQD 770
D
Sbjct: 181 PSD 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,155,908
Number of extensions: 854557
Number of successful extensions: 3580
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3567
Number of HSP's successfully gapped: 4
Length of query: 479
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 374
Effective length of database: 12,463,779
Effective search space: 4661453346
Effective search space used: 4661453346
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013106
(1438 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193955.1| POU domain, class 2, transcription factor 2 ... 71 2e-12
Alignment gi|NP_001193954.1| POU domain, class 2, transcription factor 2 ... 71 2e-12
Alignment gi|NP_002689.1| POU domain, class 2, transcription factor 2 iso... 71 2e-12
>ref|NP_001193955.1| POU domain, class 2, transcription factor 2 isoform 3 [Homo
sapiens].
Length = 467
Score = 71.2 bits (173), Expect = 2e-12
Identities = 36/57 (63%), Positives = 36/57 (63%)
Frame = +3
Query: 579 PGHHXXXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQVSGPP 749
PGHH GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ P
Sbjct: 116 PGHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRP 172
>ref|NP_001193954.1| POU domain, class 2, transcription factor 2 isoform 1 [Homo
sapiens].
Length = 479
Score = 71.2 bits (173), Expect = 2e-12
Identities = 36/57 (63%), Positives = 36/57 (63%)
Frame = +3
Query: 579 PGHHXXXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQVSGPP 749
PGHH GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ P
Sbjct: 116 PGHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAVTRP 172
>ref|NP_002689.1| POU domain, class 2, transcription factor 2 isoform 2 [Homo
sapiens].
Length = 463
Score = 71.2 bits (173), Expect = 2e-12
Identities = 38/68 (55%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = +3
Query: 579 PGHHXXXXXXXXXXXXXXXXXGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ----VSGP 746
PGHH GLLPTPNLFQLPQQTQGALLTSQPRAGLPTQ + P
Sbjct: 116 PGHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQPPKCLEPP 175
Query: 747 PHSHRGQD 770
H D
Sbjct: 176 SHPEEPSD 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,503,880
Number of extensions: 1004065
Number of successful extensions: 4436
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4420
Number of HSP's successfully gapped: 3
Length of query: 479
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,802,980
Effective search space: 5521511540
Effective search space used: 5521511540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013106
(1438 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1068 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1068 bits (539), Expect = 0.0
Identities = 545/547 (99%)
Strand = Plus / Plus
Query: 97 tggcaaagaattttccgaagtgactgtaccaatttaatcacccaccaggggctggagtat 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867011 tggcaaagaattttccgaagtgactgtaccaatttaatcacccaccaggggctggagtat 45867070
Query: 157 tttaaagctcattctagacctgctatcatttcccttgggagtgttttaaaaggaaggatg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867071 tttaaagctcattctagacctgctatcatttcccttgggagtgttttaaaaggaaggatg 45867130
Query: 217 acttggtctgatttacatttttaaacgattctattatgttctttgggaatataagacaaa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867131 acttggtctgatttacatttttaaacgattctattatgttctttgggaatataagacaaa 45867190
Query: 277 gcagatatttcaccaagaaagaaaaggtaaataaagagctagccctccttccatgacacc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867191 gcagatatttcaccaagaaagaaaaggtaaataaagagctagccctccttccatgacacc 45867250
Query: 337 tgttggtaccccagtaccccagggttaggagaggtctcctgggttcccttagctcagggc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867251 tgttggtaccccagtaccccagggttaggagaggtctcctgggttcccttagctcagggc 45867310
Query: 397 cacggtccagagacccgtgctccattccacgcttcctggtgccagcctgcccgcggagca 456
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45867311 cacggtccagagacccgtgctccattcctcgcttcctggtgccagcctgcccgcggagca 45867370
Query: 457 cccctggggctcaggcaatgcagagggaggagccgggccaggactcaggctttgttcctg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867371 cccctggggctcaggcaatgcagagggaggagccgggccaggactcaggctttgttcctg 45867430
Query: 517 cccactcccctccctgccaggacatacagcagctcctccagctccagcagctggtgcttg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867431 cccactcccctccctgccaggacatacagcagctcctccagctccagcagctggtgcttg 45867490
Query: 577 tgccgggtcaccacctccagccacctgctcagttcctgctgccgcaggcccagcagagcc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867491 tgccgggtcaccacctccagccacctgctcagttcctgctgccgcaggcccagcagagcc 45867550
Query: 637 aaccagg 643
| |||||
Sbjct: 45867551 agccagg 45867557
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,318,100
Number of extensions: 550
Number of successful extensions: 550
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 1
Length of query: 1438
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1417
Effective length of database: 2,808,413,156
Effective search space: 3979521442052
Effective search space used: 3979521442052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)