Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013113
(1078 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547911.2| PREDICTED: similar to Translation initiation fa... 580 e-165
Alignment gi|XP_868103.1| PREDICTED: similar to Translation initiation fa... 529 e-150
Alignment gi|XP_868107.1| PREDICTED: similar to Translation initiation fa... 473 e-133
Alignment gi|XP_532909.2| PREDICTED: similar to eukaryotic translation in... 83 4e-16
Alignment gi|XP_860673.1| PREDICTED: similar to eukaryotic translation in... 83 4e-16
Alignment gi|XP_860642.1| PREDICTED: similar to eukaryotic translation in... 83 4e-16
Alignment gi|XP_534645.1| PREDICTED: similar to Translation initiation fa... 76 5e-14
Alignment gi|XP_857908.1| PREDICTED: similar to Translation initiation fa... 62 7e-10
Alignment gi|XP_542030.1| PREDICTED: similar to CG11334-PB, isoform B [Ca... 55 1e-07
>ref|XP_547911.2| PREDICTED: similar to Translation initiation factor eIF-2B beta
subunit (eIF-2B GDP-GTP exchange factor) (S20I15)
(S20III15) isoform 1 [Canis familiaris].
Length = 351
Score = 580 bits (1494), Expect = e-165
Identities = 299/321 (93%), Positives = 304/321 (94%)
Frame = +3
Query: 114 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 293
MPGAAA+ SEL IESFVEALKR GR SSEDMARETLGLLRRIITD+RWSNA ELMEL
Sbjct: 1 MPGAAAEGSELCGSIESFVEALKRDGGRRSSEDMARETLGLLRRIITDHRWSNAEELMEL 60
Query: 294 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 473
+RREG+RMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTS GLSE
Sbjct: 61 VRREGQRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSEGLSE 120
Query: 474 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 653
DF HYA+LQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFL E
Sbjct: 121 DFSFHYAQLQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLIE 180
Query: 654 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 833
AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL
Sbjct: 181 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 240
Query: 834 ANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHRR 1013
ANGALRAVTGTHTLALAAKHHSTPLIVCAP KLSPQFPNEEDSFHKFVAPEEVLPF
Sbjct: 241 ANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEG 300
Query: 1014 DILEKVSVHCPVFDYVPPELI 1076
DILEKVSVHCPVFDYVPPELI
Sbjct: 301 DILEKVSVHCPVFDYVPPELI 321
>ref|XP_868103.1| PREDICTED: similar to Translation initiation factor eIF-2B beta
subunit (eIF-2B GDP-GTP exchange factor) (S20I15)
(S20III15) isoform 2 [Canis familiaris].
Length = 293
Score = 529 bits (1363), Expect = e-150
Identities = 274/293 (93%), Positives = 279/293 (95%)
Frame = +3
Query: 114 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 293
MPGAAA+ SEL IESFVEALKR GR SSEDMARETLGLLRRIITD+RWSNA ELMEL
Sbjct: 1 MPGAAAEGSELCGSIESFVEALKRDGGRRSSEDMARETLGLLRRIITDHRWSNAEELMEL 60
Query: 294 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 473
+RREG+RMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTS GLSE
Sbjct: 61 VRREGQRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSEGLSE 120
Query: 474 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 653
DF HYA+LQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFL E
Sbjct: 121 DFSFHYAQLQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLIE 180
Query: 654 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 833
AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL
Sbjct: 181 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 240
Query: 834 ANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEE 992
ANGALRAVTGTHTLALAAKHHSTPLIVCAP KLSPQFPNEEDSFHKFVAPEE
Sbjct: 241 ANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEE 293
>ref|XP_868107.1| PREDICTED: similar to Translation initiation factor eIF-2B beta
subunit (eIF-2B GDP-GTP exchange factor) (S20I15)
(S20III15) isoform 3 [Canis familiaris].
Length = 305
Score = 473 bits (1218), Expect = e-133
Identities = 255/321 (79%), Positives = 260/321 (80%)
Frame = +3
Query: 114 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 293
MPGAAA+ SEL IESFVEALKR GR SSEDMARETLGLLRRIITD+RWSNA ELMEL
Sbjct: 1 MPGAAAEGSELCGSIESFVEALKRDGGRRSSEDMARETLGLLRRIITDHRWSNAEELMEL 60
Query: 294 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 473
+RREG+RMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTS GLSE
Sbjct: 61 VRREGQRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSEGLSE 120
Query: 474 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 653
DF HYA+LQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFL E
Sbjct: 121 DFSFHYAQLQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLIE 180
Query: 654 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 833
AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNK
Sbjct: 181 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNK--------- 231
Query: 834 ANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHRR 1013
FPNEEDSFHKFVAPEEVLPF
Sbjct: 232 -------------------------------------FPNEEDSFHKFVAPEEVLPFTEG 254
Query: 1014 DILEKVSVHCPVFDYVPPELI 1076
DILEKVSVHCPVFDYVPPELI
Sbjct: 255 DILEKVSVHCPVFDYVPPELI 275
>ref|XP_532909.2| PREDICTED: similar to eukaryotic translation initiation factor 2B,
subunit 4 delta long isoform isoform 1 [Canis
familiaris].
Length = 545
Score = 83.2 bits (204), Expect = 4e-16
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 8/221 (3%)
Frame = +3
Query: 438 LHKLLTSGGLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTI 617
L+K +T S+ +EL++ I + E +V + I+ A + I++ +VI+
Sbjct: 302 LNKEITGVSSSKREEEAKSELRAAIDRYVQEKIVL---AAQAISRFAYKKINNGDVILVY 358
Query: 618 GFSRTVEAFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMS 794
G S V L+EA A+ R+F V+V + P +G +L +AG+ + + A V+
Sbjct: 359 GCSSLVSRILQEAWAKGRRFRVVVVDSRPRLEGRHTLRSLVRAGVPASYLLIPAASYVLP 418
Query: 795 RVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHK 974
V+KV++G +LANG++ + GT LAL A+ H+ P++VC K + + ++
Sbjct: 419 EVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNE 478
Query: 975 FVAPEEVLPFHRRDI-LEKVSVHCP------VFDYVPPELI 1076
P+++L + L H V+D PPEL+
Sbjct: 479 LDDPDDLLCERGEHVALANWQNHLSLRLLNLVYDVTPPELV 519
>ref|XP_860673.1| PREDICTED: similar to eukaryotic translation initiation factor 2B,
subunit 4 delta short isoform isoform 3 [Canis
familiaris].
Length = 317
Score = 83.2 bits (204), Expect = 4e-16
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 8/221 (3%)
Frame = +3
Query: 438 LHKLLTSGGLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTI 617
L+K +T S+ +EL++ I + E +V + I+ A + I++ +VI+
Sbjct: 74 LNKEITGVSSSKREEEAKSELRAAIDRYVQEKIVL---AAQAISRFAYKKINNGDVILVY 130
Query: 618 GFSRTVEAFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMS 794
G S V L+EA A+ R+F V+V + P +G +L +AG+ + + A V+
Sbjct: 131 GCSSLVSRILQEAWAKGRRFRVVVVDSRPRLEGRHTLRSLVRAGVPASYLLIPAASYVLP 190
Query: 795 RVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHK 974
V+KV++G +LANG++ + GT LAL A+ H+ P++VC K + + ++
Sbjct: 191 EVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNE 250
Query: 975 FVAPEEVLPFHRRDI-LEKVSVHCP------VFDYVPPELI 1076
P+++L + L H V+D PPEL+
Sbjct: 251 LDDPDDLLCERGEHVALANWQNHLSLRLLNLVYDVTPPELV 291
>ref|XP_860642.1| PREDICTED: similar to eukaryotic translation initiation factor 2B,
subunit 4 delta short isoform isoform 2 [Canis
familiaris].
Length = 524
Score = 83.2 bits (204), Expect = 4e-16
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 8/221 (3%)
Frame = +3
Query: 438 LHKLLTSGGLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTI 617
L+K +T S+ +EL++ I + E +V + I+ A + I++ +VI+
Sbjct: 281 LNKEITGVSSSKREEEAKSELRAAIDRYVQEKIVL---AAQAISRFAYKKINNGDVILVY 337
Query: 618 GFSRTVEAFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMS 794
G S V L+EA A+ R+F V+V + P +G +L +AG+ + + A V+
Sbjct: 338 GCSSLVSRILQEAWAKGRRFRVVVVDSRPRLEGRHTLRSLVRAGVPASYLLIPAASYVLP 397
Query: 795 RVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHK 974
V+KV++G +LANG++ + GT LAL A+ H+ P++VC K + + ++
Sbjct: 398 EVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNE 457
Query: 975 FVAPEEVLPFHRRDI-LEKVSVHCP------VFDYVPPELI 1076
P+++L + L H V+D PPEL+
Sbjct: 458 LDDPDDLLCERGEHVALANWQNHLSLRLLNLVYDVTPPELV 498
>ref|XP_534645.1| PREDICTED: similar to Translation initiation factor eIF-2B alpha
subunit (eIF-2B GDP-GTP exchange factor) isoform 1 [Canis
familiaris].
Length = 305
Score = 76.3 bits (186), Expect = 5e-14
Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Frame = +3
Query: 483 SHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEA-A 659
S Y++ + +IE L + IA I I+T +SR V L+ A A
Sbjct: 84 SDYSKCKKIMIERGELFLRRTSLSRNKIADLCHTFIKDGARILTHAYSRVVLRVLEAAVA 143
Query: 660 RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 839
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ N
Sbjct: 144 AKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVEN 203
Query: 840 GALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFP-NEEDSFHKFVAPEEVLPFHRRD 1016
G + GT+ +A+ AK + P V A K FP N++D KF + L + +
Sbjct: 204 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKTVQTE 263
Query: 1017 ILEKVSVHCPVFDYVPPELI 1076
+ + P DY P LI
Sbjct: 264 --QDLKEEHPWVDYTSPSLI 281
>ref|XP_857908.1| PREDICTED: similar to Translation initiation factor eIF-2B alpha
subunit (eIF-2B GDP-GTP exchange factor) isoform 3 [Canis
familiaris].
Length = 294
Score = 62.4 bits (150), Expect = 7e-10
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 2/200 (1%)
Frame = +3
Query: 483 SHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEA-A 659
S Y++ + +IE L + IA I I+T +SR V L+ A A
Sbjct: 84 SDYSKCKKIMIERGELFLRRTSLSRNKIADLCHTFIKDGARILTHAYSRVVLRVLEAAVA 143
Query: 660 RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 839
K++F V +MA L + TV+ DAA+ +M +V+ VI+G + ++ N
Sbjct: 144 AKKRFSV-----------KKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVEN 192
Query: 840 GALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFP-NEEDSFHKFVAPEEVLPFHRRD 1016
G + GT+ +A+ AK + P V A K FP N++D KF + L + +
Sbjct: 193 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKTVQTE 252
Query: 1017 ILEKVSVHCPVFDYVPPELI 1076
+ + P DY P LI
Sbjct: 253 --QDLKEEHPWVDYTSPSLI 270
>ref|XP_542030.1| PREDICTED: similar to CG11334-PB, isoform B [Canis familiaris].
Length = 358
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Frame = +3
Query: 606 IMTIGFSRTVEAFLKEAARKRKFHVIVAECAPFCQGHEM-AVNLSKAGIETTVMTDAAIF 782
+ T G+ + R H E P+ QG + A L I T++ D+
Sbjct: 173 LATAGYGTALGVIRSLHTLGRLDHAFCTETRPYNQGARLTAFELVYEQIPATLIADSMAA 232
Query: 783 AVMSR--VNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNE 956
A M+ V+ V++G ++ANG GT+ LA+AAKHH P V AP +
Sbjct: 233 AAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLETG 292
Query: 957 EDSFHKFVAPEEVLPFHR-RDILEKVSVHCPVFDYVPPELI 1076
++ + +E+ + R + V P FD P +LI
Sbjct: 293 KEIVIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLI 333
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,007,216
Number of extensions: 1311559
Number of successful extensions: 5809
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5783
Number of HSP's successfully gapped: 10
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013113
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013113
(1078 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015593.1| translation initiation factor eIF-2B subunit... 603 e-173
Alignment gi|NP_001029716.1| translation initiation factor eIF-2B subunit... 79 9e-15
Alignment gi|NP_001069211.1| translation initiation factor eIF-2B subunit... 76 4e-14
Alignment gi|NP_001039852.1| methylthioribose-1-phosphate isomerase [Bos ... 55 1e-07
>ref|NP_001015593.1| translation initiation factor eIF-2B subunit beta [Bos taurus].
Length = 351
Score = 603 bits (1556), Expect = e-173
Identities = 309/321 (96%), Positives = 312/321 (97%)
Frame = +3
Query: 114 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 293
MPGAAAK SELSERIESFVEALKRG GR SSEDMARETLGLLRRIITD+RWSNAGELMEL
Sbjct: 1 MPGAAAKGSELSERIESFVEALKRGGGRRSSEDMARETLGLLRRIITDHRWSNAGELMEL 60
Query: 294 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 473
IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE
Sbjct: 61 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 120
Query: 474 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 653
DFRSHYA+LQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFL+E
Sbjct: 121 DFRSHYAQLQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLRE 180
Query: 654 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 833
AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL
Sbjct: 181 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 240
Query: 834 ANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHRR 1013
ANGALRAV GTHTLALAAKHHSTPLIVCAP KLSPQFPNEEDSFHKFVAPEEVLPF
Sbjct: 241 ANGALRAVAGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEG 300
Query: 1014 DILEKVSVHCPVFDYVPPELI 1076
DILEKVSVHCPVFDYVPPELI
Sbjct: 301 DILEKVSVHCPVFDYVPPELI 321
>ref|NP_001029716.1| translation initiation factor eIF-2B subunit delta [Bos taurus].
Length = 524
Score = 78.6 bits (192), Expect = 9e-15
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 8/221 (3%)
Frame = +3
Query: 438 LHKLLTSGGLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTI 617
L+K +T S+ +EL++ I I E +V + I+ A + I + +VI+
Sbjct: 281 LNKEITGVSGSKREEEAKSELRAAIDRYIKEKIVL---AAQAISRFAYKKISNGDVILVY 337
Query: 618 GFSRTVEAFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMS 794
G S V L+EA A+ R+F V+V + P + +L +AG+ + + A V+
Sbjct: 338 GCSSLVSHILQEAWAKGRQFRVVVVDSRPRLEAKHTLRSLVRAGVPASYLLIPAASYVLP 397
Query: 795 RVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHK 974
V+KV++G +LANG++ + GT LAL A+ H+ P++VC K + + ++
Sbjct: 398 EVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNE 457
Query: 975 FVAPEEVLPFHRRDI-LEKVSVHCP------VFDYVPPELI 1076
P+++L + L H V+D PPEL+
Sbjct: 458 LDDPDDLLCERGEHVALANWQNHSSLRLLNLVYDVTPPELV 498
>ref|NP_001069211.1| translation initiation factor eIF-2B subunit alpha [Bos taurus].
Length = 305
Score = 76.3 bits (186), Expect = 4e-14
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 4/202 (1%)
Frame = +3
Query: 483 SHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEA-A 659
S Y++ + +IE L + + IA I I+T +SR V L+ A A
Sbjct: 84 SDYSKCKKIMIERGEIFLRRISLSRNKIADLCHTFIKDGARILTHAYSRVVLRVLEAAVA 143
Query: 660 RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 839
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ N
Sbjct: 144 AKKRFSVYITESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVEN 203
Query: 840 GALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFP-NEEDSFHKFVAPEEVLPFHR-- 1010
G + GT+ +A+ AK + P V A K FP N++D KF + L +
Sbjct: 204 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQTG 263
Query: 1011 RDILEKVSVHCPVFDYVPPELI 1076
+D+ E+ P DY P LI
Sbjct: 264 QDLREE----HPWVDYTSPSLI 281
>ref|NP_001039852.1| methylthioribose-1-phosphate isomerase [Bos taurus].
Length = 358
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Frame = +3
Query: 675 HVIVAECAPFCQGHEM-AVNLSKAGIETTVMTDAAIFAVMSR--VNKVIIGTKTILANGA 845
H E P+ QG + A L I T++ D+ A M+ V+ V++G ++ANG
Sbjct: 196 HAFCTETRPYNQGARLTAFELVYEQIPATLIADSMAAAAMAHQGVSAVVVGADRVVANGD 255
Query: 846 LRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHR-RDIL 1022
GT+ LA+AAKHH P V AP + + + +E+ + R
Sbjct: 256 TANKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLETGREIVIEERPDQELTDVNGVRIAA 315
Query: 1023 EKVSVHCPVFDYVPPELI 1076
+ V P FD P +LI
Sbjct: 316 PGIGVWNPAFDVTPHDLI 333
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,080,595
Number of extensions: 1270629
Number of successful extensions: 5350
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5337
Number of HSP's successfully gapped: 4
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013113
(1078 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128716.1| PREDICTED: translation initiation factor eIF... 616 e-177
Alignment gi|XP_001927637.1| PREDICTED: translation initiation factor eIF... 78 1e-14
Alignment gi|XP_003123394.1| PREDICTED: methylthioribose-1-phosphate isom... 59 6e-09
>ref|XP_003128716.1| PREDICTED: translation initiation factor eIF-2B subunit beta-like
[Sus scrofa].
Length = 351
Score = 616 bits (1588), Expect = e-177
Identities = 316/321 (98%), Positives = 316/321 (98%)
Frame = +3
Query: 114 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 293
MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL
Sbjct: 1 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 60
Query: 294 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 473
IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE
Sbjct: 61 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 120
Query: 474 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 653
DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE
Sbjct: 121 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 180
Query: 654 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 833
AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL
Sbjct: 181 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 240
Query: 834 ANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHRR 1013
ANGALRAVTGTHTLALAAKHHSTPLIVCAP KLSPQFPNEEDSFHKFVAPEEVLPF
Sbjct: 241 ANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEG 300
Query: 1014 DILEKVSVHCPVFDYVPPELI 1076
DILEKVSVHCPVFDYVPPELI
Sbjct: 301 DILEKVSVHCPVFDYVPPELI 321
>ref|XP_001927637.1| PREDICTED: translation initiation factor eIF-2B subunit alpha [Sus
scrofa].
Length = 305
Score = 77.8 bits (190), Expect = 1e-14
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 2/200 (1%)
Frame = +3
Query: 483 SHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEA-A 659
S Y++ + +IE L + + + IA I I+T +SR V L+ A A
Sbjct: 84 SDYSKCKKIMIERGEIFLRRISLSRKKIADMCHTFIKDGARILTHAYSRVVLRVLEAAVA 143
Query: 660 RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 839
K++F V + E P G +MA L + TV+ DAA+ +M +V+ VI+G + ++ N
Sbjct: 144 AKKRFSVYITESQPDLSGQKMAKALCHLNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVEN 203
Query: 840 GALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFP-NEEDSFHKFVAPEEVLPFHRRD 1016
G + GT+ +A+ AK + P V A K FP N++D KF + L +
Sbjct: 204 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG 263
Query: 1017 ILEKVSVHCPVFDYVPPELI 1076
+ + P DY P LI
Sbjct: 264 --QDLKEEHPWVDYTAPSLI 281
>ref|XP_003123394.1| PREDICTED: methylthioribose-1-phosphate isomerase [Sus scrofa].
Length = 358
Score = 58.5 bits (140), Expect = 6e-09
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
Frame = +3
Query: 606 IMTIGFSRTVEAFLKEAARKRKFHVIVAECAPFCQGHEM-AVNLSKAGIETTVMTDAAIF 782
+ T G+ + + R H E P+ QG + A L I T++TD+
Sbjct: 173 LATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEHIPATLITDSMAA 232
Query: 783 AVMSR--VNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNE 956
A M+ V+ V++G ++ANG GT+ LA+AAKHH P V AP + +
Sbjct: 233 AAMAHKGVSAVVVGADRVVANGDTANKVGTYQLAIAAKHHGIPFYVAAPSSSCDLRLESG 292
Query: 957 EDSFHKFVAPEEVLPFHR-RDILEKVSVHCPVFDYVPPELI 1076
++ + +E+ + R + V P FD P +LI
Sbjct: 293 QEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLI 333
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,770,396
Number of extensions: 817748
Number of successful extensions: 3513
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3502
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013113
(1078 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663420.1| translation initiation factor eIF-2B subunit be... 573 e-164
Alignment gi|NP_034252.2| translation initiation factor eIF-2B subunit de... 80 2e-15
Alignment gi|NP_001120828.1| translation initiation factor eIF-2B subunit... 80 2e-15
Alignment gi|NP_001120827.1| translation initiation factor eIF-2B subunit... 80 2e-15
Alignment gi|NP_663346.1| translation initiation factor eIF-2B subunit al... 80 3e-15
Alignment gi|NP_080699.3| methylthioribose-1-phosphate isomerase [Mus mus... 61 2e-09
>ref|NP_663420.1| translation initiation factor eIF-2B subunit beta [Mus musculus].
Length = 351
Score = 573 bits (1477), Expect = e-164
Identities = 290/321 (90%), Positives = 304/321 (94%)
Frame = +3
Query: 114 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 293
MPGAAAK SELSERIE FVE LKRG G+ SSEDMARETLGLLRR+ITD+ W+NAG+LM+L
Sbjct: 1 MPGAAAKGSELSERIEGFVETLKRGGGQRSSEDMARETLGLLRRLITDHHWNNAGDLMDL 60
Query: 294 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 473
IRREGRRMTAAQPSETTVGNMVRRVL+IIREEYGRLHGRSDESDQQESLHKLLTSGGLSE
Sbjct: 61 IRREGRRMTAAQPSETTVGNMVRRVLKIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 120
Query: 474 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 653
DF H+A L++NIIEAINELLVELEGT ENIAAQALEHIHSNEVIMTIG+SRTVEAFLKE
Sbjct: 121 DFSFHFAPLKANIIEAINELLVELEGTMENIAAQALEHIHSNEVIMTIGYSRTVEAFLKE 180
Query: 654 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 833
AARKRKFHVIVAECAPFCQGHEMAVNLSK GIETTVMTDAAIFAVMSRVNKVIIGTKTIL
Sbjct: 181 AARKRKFHVIVAECAPFCQGHEMAVNLSKEGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 240
Query: 834 ANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHRR 1013
ANG+LRAV GTHTLALAAKHHSTPLIVCAP KLSPQFP+EEDSFHKFVAPEEVLPF
Sbjct: 241 ANGSLRAVAGTHTLALAAKHHSTPLIVCAPMFKLSPQFPSEEDSFHKFVAPEEVLPFTEG 300
Query: 1014 DILEKVSVHCPVFDYVPPELI 1076
DILEKVSVHCPVFDYVPP+LI
Sbjct: 301 DILEKVSVHCPVFDYVPPDLI 321
>ref|NP_034252.2| translation initiation factor eIF-2B subunit delta isoform 2 [Mus
musculus].
Length = 524
Score = 80.5 bits (197), Expect = 2e-15
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Frame = +3
Query: 462 GLSEDFRSHYAELQSNIIEAINELLVE-LEGTTENIAAQALEHIHSNEVIMTIGFSRTVE 638
G+S R E +S + EA++ + E + + I+ A I +VI+ G S V
Sbjct: 287 GMSSSKREE--EAKSELREALDRYVQEKIVLAAQAISRFASTKISDGDVILVYGCSSLVS 344
Query: 639 AFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVII 815
L+EA R+F V+V + P +G M +L +AG+ T+ + A V+ V+KV++
Sbjct: 345 RILQEARVEGRRFRVVVVDSRPRLEGRHMLHSLVRAGVPTSYLLIPAASYVLPEVSKVLL 404
Query: 816 GTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEV 995
G +LANG++ + GT LAL A+ H+ P++VC K + + ++ P++
Sbjct: 405 GAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDD- 463
Query: 996 LPFHRRDILEKVSVHCP--------VFDYVPPELI 1076
L R D + + V+D PPEL+
Sbjct: 464 LQCKRGDQVALANWQSHPSLRLLNLVYDVTPPELV 498
>ref|NP_001120828.1| translation initiation factor eIF-2B subunit delta isoform 1 [Mus
musculus].
Length = 544
Score = 80.5 bits (197), Expect = 2e-15
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Frame = +3
Query: 462 GLSEDFRSHYAELQSNIIEAINELLVE-LEGTTENIAAQALEHIHSNEVIMTIGFSRTVE 638
G+S R E +S + EA++ + E + + I+ A I +VI+ G S V
Sbjct: 307 GMSSSKREE--EAKSELREALDRYVQEKIVLAAQAISRFASTKISDGDVILVYGCSSLVS 364
Query: 639 AFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVII 815
L+EA R+F V+V + P +G M +L +AG+ T+ + A V+ V+KV++
Sbjct: 365 RILQEARVEGRRFRVVVVDSRPRLEGRHMLHSLVRAGVPTSYLLIPAASYVLPEVSKVLL 424
Query: 816 GTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEV 995
G +LANG++ + GT LAL A+ H+ P++VC K + + ++ P++
Sbjct: 425 GAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDD- 483
Query: 996 LPFHRRDILEKVSVHCP--------VFDYVPPELI 1076
L R D + + V+D PPEL+
Sbjct: 484 LQCKRGDQVALANWQSHPSLRLLNLVYDVTPPELV 518
>ref|NP_001120827.1| translation initiation factor eIF-2B subunit delta isoform 1 [Mus
musculus].
Length = 544
Score = 80.5 bits (197), Expect = 2e-15
Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Frame = +3
Query: 462 GLSEDFRSHYAELQSNIIEAINELLVE-LEGTTENIAAQALEHIHSNEVIMTIGFSRTVE 638
G+S R E +S + EA++ + E + + I+ A I +VI+ G S V
Sbjct: 307 GMSSSKREE--EAKSELREALDRYVQEKIVLAAQAISRFASTKISDGDVILVYGCSSLVS 364
Query: 639 AFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVII 815
L+EA R+F V+V + P +G M +L +AG+ T+ + A V+ V+KV++
Sbjct: 365 RILQEARVEGRRFRVVVVDSRPRLEGRHMLHSLVRAGVPTSYLLIPAASYVLPEVSKVLL 424
Query: 816 GTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEV 995
G +LANG++ + GT LAL A+ H+ P++VC K + + ++ P++
Sbjct: 425 GAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDD- 483
Query: 996 LPFHRRDILEKVSVHCP--------VFDYVPPELI 1076
L R D + + V+D PPEL+
Sbjct: 484 LQCKRGDQVALANWQSHPSLRLLNLVYDVTPPELV 518
>ref|NP_663346.1| translation initiation factor eIF-2B subunit alpha [Mus musculus].
Length = 305
Score = 80.1 bits (196), Expect = 3e-15
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 2/200 (1%)
Frame = +3
Query: 483 SHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEA-A 659
S Y++ + +IE L + + IA I I+T +SR V L+EA A
Sbjct: 84 SDYSKCKKIMIERGELFLRRISLSRNKIANLCHTFIKDGARILTHAYSRVVLRVLEEAVA 143
Query: 660 RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 839
K++F V + E P G +MA LS + TV+ DAA+ +M + + VI+G + ++ N
Sbjct: 144 AKKRFSVYITESQPDLSGKKMAKALSHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVEN 203
Query: 840 GALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFP-NEEDSFHKFVAPEEVLPFHRRD 1016
G + GT+ +A+ AK + P V A K FP N+ED KF + L +
Sbjct: 204 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQEDVPDKFKYKADTLKSVQTG 263
Query: 1017 ILEKVSVHCPVFDYVPPELI 1076
+ + P DY P LI
Sbjct: 264 --QDLKEEHPWVDYTSPSLI 281
>ref|NP_080699.3| methylthioribose-1-phosphate isomerase [Mus musculus].
Length = 369
Score = 60.8 bits (146), Expect = 2e-09
Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 4/269 (1%)
Frame = +3
Query: 282 LMELIRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSG 461
L+ +R + R + AA+P+ + R + ++ +E R G ++E+ ++ +
Sbjct: 75 LVAFVRDQLRLLVAARPTAVNMARAARDLGQVAAQEAER-EGATEETVRERVIR------ 127
Query: 462 GLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEA 641
+ED + +I + L+E + L H ++ + T G+ +
Sbjct: 128 -FAEDMLEKDLKDNRSIGDLGARHLLE-QTNPRGGKVTVLTHCNTG-ALATAGYGTALGV 184
Query: 642 FLKEAARKRKFHVIVAECAPFCQGHEM-AVNLSKAGIETTVMTDAAIFAVMSR--VNKVI 812
R H E P+ QG + A L I T++TD+ A M+ V+ V+
Sbjct: 185 IRSLHEMGRLEHTFCTETRPYNQGARLTAFELVYEQIPATLITDSMAAAAMAHRGVSAVV 244
Query: 813 IGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEE 992
+G ++ANG GT+ LA+ AKHH P V AP ++ + +E
Sbjct: 245 VGADRVVANGDTANKIGTYQLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERPSQE 304
Query: 993 VLPFHR-RDILEKVSVHCPVFDYVPPELI 1076
+ + R + + V P FD P ELI
Sbjct: 305 LTDLNGVRIAAQGIRVWNPAFDVTPHELI 333
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,286,910
Number of extensions: 1071743
Number of successful extensions: 4264
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4246
Number of HSP's successfully gapped: 6
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013113
(1078 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055054.1| translation initiation factor eIF-2B subunit be... 589 e-168
Alignment gi|NP_001029288.1| translation initiation factor eIF-2B subunit... 83 5e-16
Alignment gi|NP_056451.3| translation initiation factor eIF-2B subunit de... 83 5e-16
Alignment gi|NP_751945.2| translation initiation factor eIF-2B subunit de... 83 5e-16
Alignment gi|NP_001405.1| translation initiation factor eIF-2B subunit al... 77 3e-14
Alignment gi|NP_001026897.1| methylthioribose-1-phosphate isomerase isofo... 58 2e-08
Alignment gi|NP_115661.1| methylthioribose-1-phosphate isomerase isoform ... 55 8e-08
>ref|NP_055054.1| translation initiation factor eIF-2B subunit beta [Homo sapiens].
Length = 351
Score = 589 bits (1518), Expect = e-168
Identities = 301/321 (93%), Positives = 308/321 (95%)
Frame = +3
Query: 114 MPGAAAKSSELSERIESFVEALKRGSGRHSSEDMARETLGLLRRIITDYRWSNAGELMEL 293
MPG+AAK SELSERIESFVE LKRG G SSE+MARETLGLLR+IITD+RWSNAGELMEL
Sbjct: 1 MPGSAAKGSELSERIESFVETLKRGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMEL 60
Query: 294 IRREGRRMTAAQPSETTVGNMVRRVLRIIREEYGRLHGRSDESDQQESLHKLLTSGGLSE 473
IRREGRRMTAAQPSETTVGNMVRRVL+IIREEYGRLHGRSDESDQQESLHKLLTSGGL+E
Sbjct: 61 IRREGRRMTAAQPSETTVGNMVRRVLKIIREEYGRLHGRSDESDQQESLHKLLTSGGLNE 120
Query: 474 DFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 653
DF HYA+LQSNIIEAINELLVELEGT ENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE
Sbjct: 121 DFSFHYAQLQSNIIEAINELLVELEGTMENIAAQALEHIHSNEVIMTIGFSRTVEAFLKE 180
Query: 654 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 833
AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL
Sbjct: 181 AARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTIL 240
Query: 834 ANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHRR 1013
ANGALRAVTGTHTLALAAKHHSTPLIVCAP KLSPQFPNEEDSFHKFVAPEEVLPF
Sbjct: 241 ANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEG 300
Query: 1014 DILEKVSVHCPVFDYVPPELI 1076
DILEKVSVHCPVFDYVPPELI
Sbjct: 301 DILEKVSVHCPVFDYVPPELI 321
>ref|NP_001029288.1| translation initiation factor eIF-2B subunit delta isoform 2 [Homo
sapiens].
Length = 523
Score = 82.8 bits (203), Expect = 5e-16
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 8/221 (3%)
Frame = +3
Query: 438 LHKLLTSGGLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTI 617
L+K +TS G S+ +EL++ I + E +V + I+ A + I + +VI+
Sbjct: 280 LNKEITSVGSSKREEEAKSELRAAIDRYVQEKIVL---AAQAISRFAYQKISNGDVILVY 336
Query: 618 GFSRTVEAFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMS 794
G S V L+EA R+F V+V + P+ +G +L AG+ + + A V+
Sbjct: 337 GCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGRHTLRSLVHAGVPASYLLIPAASYVLP 396
Query: 795 RVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHK 974
V+KV++G +LANG++ + GT LAL A+ H+ P++VC K + + ++
Sbjct: 397 EVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNE 456
Query: 975 FVAPEEVLPFHRRDI-LEKVSVHCP------VFDYVPPELI 1076
P+++ + L H V+D PPEL+
Sbjct: 457 LDDPDDLQCKRGEHVALANWQNHASLRLLNLVYDVTPPELV 497
>ref|NP_056451.3| translation initiation factor eIF-2B subunit delta isoform 3 [Homo
sapiens].
Length = 522
Score = 82.8 bits (203), Expect = 5e-16
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 8/221 (3%)
Frame = +3
Query: 438 LHKLLTSGGLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTI 617
L+K +TS G S+ +EL++ I + E +V + I+ A + I + +VI+
Sbjct: 279 LNKEITSVGSSKREEEAKSELRAAIDRYVQEKIVL---AAQAISRFAYQKISNGDVILVY 335
Query: 618 GFSRTVEAFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMS 794
G S V L+EA R+F V+V + P+ +G +L AG+ + + A V+
Sbjct: 336 GCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGRHTLRSLVHAGVPASYLLIPAASYVLP 395
Query: 795 RVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHK 974
V+KV++G +LANG++ + GT LAL A+ H+ P++VC K + + ++
Sbjct: 396 EVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNE 455
Query: 975 FVAPEEVLPFHRRDI-LEKVSVHCP------VFDYVPPELI 1076
P+++ + L H V+D PPEL+
Sbjct: 456 LDDPDDLQCKRGEHVALANWQNHASLRLLNLVYDVTPPELV 496
>ref|NP_751945.2| translation initiation factor eIF-2B subunit delta isoform 1 [Homo
sapiens].
Length = 543
Score = 82.8 bits (203), Expect = 5e-16
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 8/221 (3%)
Frame = +3
Query: 438 LHKLLTSGGLSEDFRSHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTI 617
L+K +TS G S+ +EL++ I + E +V + I+ A + I + +VI+
Sbjct: 300 LNKEITSVGSSKREEEAKSELRAAIDRYVQEKIVL---AAQAISRFAYQKISNGDVILVY 356
Query: 618 GFSRTVEAFLKEA-ARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMS 794
G S V L+EA R+F V+V + P+ +G +L AG+ + + A V+
Sbjct: 357 GCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGRHTLRSLVHAGVPASYLLIPAASYVLP 416
Query: 795 RVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHK 974
V+KV++G +LANG++ + GT LAL A+ H+ P++VC K + + ++
Sbjct: 417 EVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNE 476
Query: 975 FVAPEEVLPFHRRDI-LEKVSVHCP------VFDYVPPELI 1076
P+++ + L H V+D PPEL+
Sbjct: 477 LDDPDDLQCKRGEHVALANWQNHASLRLLNLVYDVTPPELV 517
>ref|NP_001405.1| translation initiation factor eIF-2B subunit alpha [Homo sapiens].
Length = 305
Score = 77.0 bits (188), Expect = 3e-14
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Frame = +3
Query: 483 SHYAELQSNIIEAINELLVELEGTTENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEA-A 659
S Y++ + +IE L + + IA I I+T +SR V L+ A A
Sbjct: 84 SDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVA 143
Query: 660 RKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILAN 839
K++F V V E P G +MA L + TV+ DAA+ +M + + VI+G + ++ N
Sbjct: 144 AKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVEN 203
Query: 840 GALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFP-NEEDSFHKFVAPEEVLPFHRRD 1016
G + GT+ +A+ AK + P V A K FP N++D KF + L +
Sbjct: 204 GGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKADTLKVAQTG 263
Query: 1017 ILEKVSVHCPVFDYVPPELI 1076
+ + P DY P LI
Sbjct: 264 --QDLKEEHPWVDYTAPSLI 281
>ref|NP_001026897.1| methylthioribose-1-phosphate isomerase isoform 1 [Homo sapiens].
Length = 369
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Frame = +3
Query: 606 IMTIGFSRTVEAFLKEAARKRKFHVIVAECAPFCQGHEM-AVNLSKAGIETTVMTDAAIF 782
+ T G+ + + R H E P+ QG + A L I T++TD+ +
Sbjct: 173 LATAGYGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFELVYEQIPATLITDSMVA 232
Query: 783 AVMSR--VNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNE 956
A M+ V+ V++G ++ANG GT+ LA+ AKHH P V AP +
Sbjct: 233 AAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETG 292
Query: 957 EDSFHKFVAPEEVLPFHR-RDILEKVSVHCPVFDYVPPELI 1076
++ + +E+ + R + V P FD P +LI
Sbjct: 293 KEIIIEERPGQELTDVNGVRIAAPGIGVWNPAFDVTPHDLI 333
>ref|NP_115661.1| methylthioribose-1-phosphate isomerase isoform 2 [Homo sapiens].
Length = 322
Score = 55.5 bits (132), Expect = 8e-08
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Frame = +3
Query: 684 VAECAPFCQGHEM-AVNLSKAGIETTVMTDAAIFAVMSR--VNKVIIGTKTILANGALRA 854
V E P+ QG + A L I T++TD+ + A M+ V+ V++G ++ANG
Sbjct: 152 VLETRPYNQGARLTAFELVYEQIPATLITDSMVAAAMAHRGVSAVVVGADRVVANGDTAN 211
Query: 855 VTGTHTLALAAKHHSTPLIVCAPYVKLSPQFPNEEDSFHKFVAPEEVLPFHR-RDILEKV 1031
GT+ LA+ AKHH P V AP + ++ + +E+ + R +
Sbjct: 212 KVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVNGVRIAAPGI 271
Query: 1032 SVHCPVFDYVPPELI 1076
V P FD P +LI
Sbjct: 272 GVWNPAFDVTPHDLI 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,136,027
Number of extensions: 1285493
Number of successful extensions: 5112
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5091
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013113
(1078 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 474 e-131
>Sscrofa_Chr07
|| Length = 134764511
Score = 474 bits (239), Expect = e-131
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 39 cctcttctgccccggaagtgcaagttcggaggtcttgcaggtggggattccgccggcaag 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104047943 cctcttctgccccggaagtgcaagttcggaggtcttgcaggtggggattccgccggcaag 104048002
Query: 99 gcggctgctttcgagatgccaggggctgccgccaagagctcggagttgtccgagaggatc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104048003 gcggctgctttcgagatgccaggggctgccgccaagagctcggagttgtccgagaggatc 104048062
Query: 159 gagagtttcgtggaggcactgaaacggggcagcgggcggcacagctctgaggacatggcc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104048063 gagagtttcgtggaggcactgaaacggggcagcgggcggcacagctctgaggacatggcc 104048122
Query: 219 cgggagaccctgggactgctgcgccggatcatcacggactaccgctggagcaacgcagg 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104048123 cgggagaccctgggactgctgcgccggatcatcacggactaccgctggagcaacgcagg 104048181
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 546 gaagggacaaccgagaacattgcagcccaggccctggaacacatccactccaatgaggtg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104049635 gaagggacaaccgagaacattgcagcccaggccctggaacacatccactccaatgaggtg 104049694
Query: 606 atcatgaccattggcttctcccgaacagtagaggccttcctcaaagaggcagcccgaaag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104049695 atcatgaccattggcttctcccgaacagtagaggccttcctcaaagaggcagcccgaaag 104049754
Query: 666 aggaaattccatgtcattgtggcagagtgtgctcctttctgtcagg 711
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104049755 aggaaattccatgtcattgtggcagagtgtgctcctttctgtcagg 104049800
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 396 agactccatggacgcagcgacgaaagcgatcagcaggagtccctgcacaaactcttgacg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104048576 agactccatggacgcagcgacgaaagcgatcagcaggagtccctgcacaaactcttgacg 104048635
Query: 456 tccgggggcctgagcgaggatttccgctctcattatgctgaactccagtccaacatcatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104048636 tccgggggcctgagcgaggatttccgctctcattatgctgaactccagtccaacatcatt 104048695
Query: 516 gaggcaattaatgagctgcttgtggaactgg 546
|||||||||||||||||||||||||||||||
Sbjct: 104048696 gaggcaattaatgagctgcttgtggaactgg 104048726
Score = 250 bits (126), Expect = 1e-63
Identities = 140/142 (98%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 804 aaggtgatcattggcacaaagaccatcctggccaatggtgctctgagagctgtgacagga 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104051261 aaggtgatcattggcacaaagaccatcctggccaatggtgctctgagagctgtgacagga 104051320
Query: 864 acacatactttagcactggcagcaaaacaccattccaccccactcatcgtctgtgctcct 923
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104051321 acacatactttagcactggcagcaaaacaccattccaccccactcatcgtctgtgctcc- 104051379
Query: 924 tatg-tcaaactttccccacag 944
|||| |||||||||||||||||
Sbjct: 104051380 tatgttcaaactttccccacag 104051401
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 273 gcaggggagctgatggaactgatccgcagagaaggccggaggatgacggccgcgcagccc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104048296 gcaggggagctgatggaactgatccgcagagaaggccggaggatgacggccgcgcagccc 104048355
Query: 333 tcagagaccaccgtgggcaacatggtgcggagagtgctcaggatcatccgggaggagtat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104048356 tcagagaccaccgtgggcaacatggtgcggagagtgctcaggatcatccgggaggagtat 104048415
Query: 393 ggcag 397
|||||
Sbjct: 104048416 ggcag 104048420
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 708 cagggtcatgagatggcggtcaatttgtccaaagcaggtattgagacaactgtcatgact 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104050582 cagggtcatgagatggcggtcaatttgtccaaagcaggtattgagacaactgtcatgact 104050641
Query: 768 gatgctgccatttttgctgttatgtcaagagtcaataaggtg 809
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104050642 gatgctgccatttttgctgttatgtcaagagtcaataaggtg 104050683
Score = 127 bits (64), Expect = 1e-26
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 942 cagttccccaatgaagaagattcatttcacaaatttgtggcccctgaagaagtcttgcct 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104052637 cagttccccaatgaagaagattcatttcacaaatttgtggcccctgaagaagtcttgcc- 104052695
Query: 1002 tttcacagaagg 1013
||||||||||||
Sbjct: 104052696 tttcacagaagg 104052707
Score = 125 bits (63), Expect = 5e-26
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1012 gggacattctggagaaggtcagtgtccactgccccgtgtttgactacgtccccccagagc 1071
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 104053950 gggacattctggagaaggtcagtgttcactgccccgtgtttgactacgtccccccagagc 104054009
Query: 1072 tcattac 1078
|||||||
Sbjct: 104054010 tcattac 104054016
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,910,007
Number of extensions: 116
Number of successful extensions: 116
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 8
Length of query: 1078
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1057
Effective length of database: 2,808,413,156
Effective search space: 2968492705892
Effective search space used: 2968492705892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)