Animal-Genome cDNA 20110601C-013117


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013117
         (517 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001124230.1| copper transport protein ATOX1 [Bos taurus].      132   2e-31

>ref|NP_001124230.1| copper transport protein ATOX1 [Bos taurus].
          Length = 68

 Score =  132 bits (332), Expect = 2e-31
 Identities = 63/64 (98%), Positives = 64/64 (100%)
 Frame = +1

Query: 112 MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCIDSEHSVDTLLETLGKTGK 291
           MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCI+SEHSVDTLLETLGKTGK
Sbjct: 1   MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCINSEHSVDTLLETLGKTGK 60

Query: 292 AVSY 303
           AVSY
Sbjct: 61  AVSY 64


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 18,634,478
Number of extensions: 549965
Number of successful extensions: 3170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3142
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 17,681,374
Length adjustment: 95
Effective length of query: 77
Effective length of database: 14,538,014
Effective search space: 1119427078
Effective search space used: 1119427078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Animal-Genome cDNA 20110601C-013117

Animal-Genome cDNA 20110601C-013117


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013117
         (517 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003119.1| copper transport protein ATOX1 [Canis lupus ...   124   5e-29

>ref|NP_001003119.1| copper transport protein ATOX1 [Canis lupus familiaris].
          Length = 68

 Score =  124 bits (311), Expect = 5e-29
 Identities = 59/64 (92%), Positives = 62/64 (96%)
 Frame = +1

Query: 112 MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCIDSEHSVDTLLETLGKTGK 291
           MPKHEFSVDMTCEGCSNAV+RVLNKLGGV+FDIDLPNKKVCI+SEHSVD LLETL KTGK
Sbjct: 1   MPKHEFSVDMTCEGCSNAVSRVLNKLGGVEFDIDLPNKKVCINSEHSVDILLETLEKTGK 60

Query: 292 AVSY 303
           AVSY
Sbjct: 61  AVSY 64


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 19,290,436
Number of extensions: 546892
Number of successful extensions: 3160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3138
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 18,874,504
Length adjustment: 95
Effective length of query: 77
Effective length of database: 15,707,584
Effective search space: 1209483968
Effective search space used: 1209483968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013117
         (517 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001161113.1| copper transport protein ATOX1 [Sus scrofa].      134   3e-32

>ref|NP_001161113.1| copper transport protein ATOX1 [Sus scrofa].
          Length = 68

 Score =  134 bits (337), Expect = 3e-32
 Identities = 64/64 (100%), Positives = 64/64 (100%)
 Frame = +1

Query: 112 MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCIDSEHSVDTLLETLGKTGK 291
           MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCIDSEHSVDTLLETLGKTGK
Sbjct: 1   MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCIDSEHSVDTLLETLGKTGK 60

Query: 292 AVSY 303
           AVSY
Sbjct: 61  AVSY 64


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,195,178
Number of extensions: 376702
Number of successful extensions: 1971
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1955
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 11,343,932
Length adjustment: 92
Effective length of query: 80
Effective length of database: 9,053,408
Effective search space: 724272640
Effective search space used: 724272640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013117
         (517 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033850.1| copper transport protein ATOX1 [Mus musculus].       119   1e-27

>ref|NP_033850.1| copper transport protein ATOX1 [Mus musculus].
          Length = 68

 Score =  119 bits (298), Expect = 1e-27
 Identities = 56/64 (87%), Positives = 60/64 (93%)
 Frame = +1

Query: 112 MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCIDSEHSVDTLLETLGKTGK 291
           MPKHEFSVDMTCEGC+ AV+RVLNKLGGV+F+IDLPNKKVCIDSEHS DTLL TL KTGK
Sbjct: 1   MPKHEFSVDMTCEGCAEAVSRVLNKLGGVEFNIDLPNKKVCIDSEHSSDTLLATLNKTGK 60

Query: 292 AVSY 303
           AVSY
Sbjct: 61  AVSY 64


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 15,856,128
Number of extensions: 437650
Number of successful extensions: 2618
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2572
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 15,617,559
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,794,175
Effective search space: 997945650
Effective search space used: 997945650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013117
         (517 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004036.1| copper transport protein ATOX1 [Homo sapiens].       114   5e-26

>ref|NP_004036.1| copper transport protein ATOX1 [Homo sapiens].
          Length = 68

 Score =  114 bits (285), Expect = 5e-26
 Identities = 53/64 (82%), Positives = 59/64 (92%)
 Frame = +1

Query: 112 MPKHEFSVDMTCEGCSNAVTRVLNKLGGVQFDIDLPNKKVCIDSEHSVDTLLETLGKTGK 291
           MPKHEFSVDMTC GC+ AV+RVLNKLGGV++DIDLPNKKVCI+SEHS+DTLL TL KTGK
Sbjct: 1   MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60

Query: 292 AVSY 303
            VSY
Sbjct: 61  TVSY 64


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 18,875,078
Number of extensions: 531500
Number of successful extensions: 2952
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2928
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 18,297,164
Length adjustment: 95
Effective length of query: 77
Effective length of database: 15,165,584
Effective search space: 1167749968
Effective search space used: 1167749968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013117
         (517 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL894053.2| Sus scrofa unplaced genomic scaffold ChrUScaf1937      343   6e-92
Sscrofa_Chr16                                                         335   1e-89
Sscrofa_Chr08                                                         170   5e-40
Sscrofa_Chr02                                                         159   2e-36

>gb|GL894053.2| Sus scrofa unplaced genomic scaffold ChrUScaf1937
          Length = 64625

 Score =  343 bits (173), Expect = 6e-92
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                        
Query: 192  aggagttcagtttgacattgacctgcccaacaagaaggtctgcattgactctgagcacag 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 aggagttcagtttgacattgacctgcccaacaagaaggtctgcattgactctgagcacag 1677

                                                                        
Query: 252  cgtggacactctgctggagaccctggggaagacaggaaaggccgtttcctacctcggccc 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 cgtggacactctgctggagaccctggggaagacaggaaaggccgtttcctacctcggccc 1737

                                                                 
Query: 312  caagtagtgagggctcgggcccctggcctgcaggatggaccaaagtgggcagg 364
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 caagtagtgagggctcgggcccctggcctgcaggatggaccaaagtgggcagg 1790



 Score =  264 bits (133), Expect = 4e-68
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                        
Query: 360  gcaggatgctgatctgccttccagacagatgtaaggcctggcagtcctgctcaacgacgg 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5984 gcaggatgctgatctgccttccagacagatgtaaggcctggcagtcctgctcaacgacgg 6043

                                                                        
Query: 420  gaattcctgtggagaccctcacttcccctgctcctctgtagcttccctctaataaagtca 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6044 gaattcctgtggagaccctcacttcccctgctcctctgtagcttccctctaataaagtca 6103

                         
Query: 480  agctgcttttgct 492
            |||||||||||||
Sbjct: 6104 agctgcttttgct 6116



 Score =  155 bits (78), Expect = 3e-35
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                       
Query: 117 gaagcacgagttctccgtggacatgacctgtgagggctgctctaacgcagtcactcgggt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gaagcacgagttctccgtggacatgacctgtgagggctgctctaacgcagtcactcgggt 353

                             
Query: 177 cctcaacaagctgggagg 194
           ||||||||||||||||||
Sbjct: 354 cctcaacaagctgggagg 371


>Sscrofa_Chr16 
||          Length = 86898991

 Score =  335 bits (169), Expect = 1e-89
 Identities = 172/173 (99%)
 Strand = Plus / Plus

                                                                            
Query: 192      aggagttcagtttgacattgacctgcccaacaagaaggtctgcattgactctgagcacag 251
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77537838 aggagttcagtttgacattgacctgcccaacaagaaggtctgcattgactctgagcacag 77537897

                                                                            
Query: 252      cgtggacactctgctggagaccctggggaagacaggaaaggccgtttcctacctcggccc 311
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 77537898 cgtggacactctgctggagaccctggggaagacaggaaaggccgtttcctaccttggccc 77537957

                                                                     
Query: 312      caagtagtgagggctcgggcccctggcctgcaggatggaccaaagtgggcagg 364
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77537958 caagtagtgagggctcgggcccctggcctgcaggatggaccaaagtgggcagg 77538010



 Score =  264 bits (133), Expect = 4e-68
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                            
Query: 360      gcaggatgctgatctgccttccagacagatgtaaggcctggcagtcctgctcaacgacgg 419
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77542536 gcaggatgctgatctgccttccagacagatgtaaggcctggcagtcctgctcaacgacgg 77542595

                                                                            
Query: 420      gaattcctgtggagaccctcacttcccctgctcctctgtagcttccctctaataaagtca 479
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77542596 gaattcctgtggagaccctcacttcccctgctcctctgtagcttccctctaataaagtca 77542655

                             
Query: 480      agctgcttttgct 492
                |||||||||||||
Sbjct: 77542656 agctgcttttgct 77542668



 Score =  220 bits (111), Expect = 6e-55
 Identities = 114/115 (99%)
 Strand = Plus / Minus

                                                                            
Query: 3        ggggccgggaccaaagagcggctgctgcggggcgcgcgcacccggaagcgcaaccgcgcc 62
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77451946 ggggccgggaccaaagagcggctgctgcggggcgcgcgcacccggaagcgcaaccgcgcc 77451887

                                                                       
Query: 63       agcgctgagagccgcgggaggcgtcgccacggccaccacgtcctcagtcatgccg 117
                |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77451886 agcgctcagagccgcgggaggcgtcgccacggccaccacgtcctcagtcatgccg 77451832



 Score =  155 bits (78), Expect = 3e-35
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                            
Query: 117      gaagcacgagttctccgtggacatgacctgtgagggctgctctaacgcagtcactcgggt 176
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77444383 gaagcacgagttctccgtggacatgacctgtgagggctgctctaacgcagtcactcgggt 77444324

                                  
Query: 177      cctcaacaagctgggagg 194
                ||||||||||||||||||
Sbjct: 77444323 cctcaacaagctgggagg 77444306


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  170 bits (86), Expect = 5e-40
 Identities = 313/385 (81%), Gaps = 9/385 (2%)
 Strand = Plus / Minus

                                                                            
Query: 88       gccacggccaccacgtcctcagtcatgccgaagcacgagttctccgtggacatgacctgt 147
                ||||| |||||||| ||||||| |||||| | |||| ||||||||  | ||||| || | 
Sbjct: 78461427 gccacagccaccacctcctcagccatgccaaggcac-agttctccacgaacatgtccagg 78461369

                                                                            
Query: 148      gagggctgctctaacgcagtcactcgggtcctcaacaagctgggaggagttcagtttgac 207
                |||||||||||||  | ||| |||| |||| ||||||| ||  |||||| ||||||||||
Sbjct: 78461368 gagggctgctctattgtagtaactcaggtcttcaacaaacttagaggaggtcagtttgac 78461309

                                                                            
Query: 208      attgacctgcccaacaagaaggtctgcattgactctgagcacagcgtggacactctgctg 267
                ||||| |||||||| | ||||||||||||||||||  ||||||| ||||||| ||| |||
Sbjct: 78461308 attgatctgcccaagaggaaggtctgcattgactc--agcacagtgtggacattcttctg 78461251

                                                                            
Query: 268      gagaccctggggaagacaggaaaggccgtttcctacctcggccccaagtagtgagggctc 327
                |||||||||||||| ||||||||||| || || || ||  | || ||| ||  ||||   
Sbjct: 78461250 gagaccctggggaaaacaggaaaggctgtgtcttatcttag-ccaaagcagcaagggtct 78461192

                                                                            
Query: 328      gggcccctggcctgcaggatggaccaaagtgggcagg-----atgctgatctgccttcca 382
                |||| ||||||||| ||||||  ||||||||||||||     || ||   | || |||||
Sbjct: 78461191 gggctcctggcctgtaggatgagccaaagtgggcaggacaccatcctttccagctttcca 78461132

                                                                            
Query: 383      gacagatgtaaggcctggcagtcctgctcaacgacgggaattcctgtggagaccctcact 442
                | |||||  | |  ||||||||||||||||| || | || |||||| |||||||||||||
Sbjct: 78461131 ggcagatccaggaactggcagtcctgctcaaggatgtgagttcctgcggagaccctcact 78461072

                                         
Query: 443      tcccctgctcctctgtagcttccct 467
                | |||||||||||||||||||||||
Sbjct: 78461071 taccctgctcctctgtagcttccct 78461047


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  159 bits (80), Expect = 2e-36
 Identities = 329/412 (79%), Gaps = 25/412 (6%)
 Strand = Plus / Plus

                                                                            
Query: 103      tcctcagtcatgccgaagca----cgagttctccgtggacatgacctgtgagggctgctc 158
                ||||||||||||||||||||     ||||||||| ||||||| | |||||| ||||||||
Sbjct: 30534393 tcctcagtcatgccgaagcatgactgagttctccatggacataaactgtgaaggctgctc 30534452

                                                                            
Query: 159      taacgcagtcactcgggtcctcaacaagctgggaggagttcagtttgacattgacctgcc 218
                ||||||||||||| || |||||||  ||| ||||||||||||||||||||||||||| ||
Sbjct: 30534453 taacgcagtcacttggctcctcaatgagccgggaggagttcagtttgacattgacctacc 30534512

                                                                            
Query: 219      ------------caacaagaaggtctgcattgactctgagcacagcgtggacactctgct 266
                            |||  |||| ||||||||  |||||||||| || ||| ||||||||||
Sbjct: 30534513 acagagttgatgcaatgagaaagtctgcatcaactctgagcatagtgtgcacactctgct 30534572

                                                                            
Query: 267      ggagaccctggggaagacaggaaaggccgtttcctacctcggccccaagtagtgagggct 326
                |||||| ||||| || ||||||||||| |||||||||||| |||||||| |||  |||||
Sbjct: 30534573 ggagacactgggaaaaacaggaaaggctgtttcctacctcagccccaagcagt--gggct 30534630

                                                                            
Query: 327      cgggcccctggcctgcaggatggaccaaagtgggcaggatgctgat------ctgccttc 380
                 ||||| | |||  ||||||   |  ||||| |||||||  |||||      ||||||||
Sbjct: 30534631 -gggcctcaggctggcaggagaaatgaaagtaggcaggactctgatccactgctgccttc 30534689

                                                                            
Query: 381      cagacagatgtaaggcctggcagtcctgctcaacgacgggaattcctgtggagaccctca 440
                |||| |||| |  | || |||| |||||||||  || |||| ||  ||  |||| |||||
Sbjct: 30534690 cagagagatctcggacccggcaatcctgctcagtgaagggagtttgtggagagatcctca 30534749

                                                                    
Query: 441      cttcccctgctcctctgtagcttccctctaataaagtcaagctgcttttgct 492
                ||| |||||||||||||||||||| ||  ||||||| |||||||||||||||
Sbjct: 30534750 cttgccctgctcctctgtagcttctctgcaataaaggcaagctgcttttgct 30534801


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 11,615,310
Number of extensions: 351
Number of successful extensions: 351
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 12
Length of query: 517
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 496
Effective length of database: 2,808,413,156
Effective search space: 1392972925376
Effective search space used: 1392972925376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)