BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013121
(1047 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859639.1| PREDICTED: similar to ubiquitin specific protea... 453 e-127
Alignment gi|XP_849718.1| PREDICTED: similar to ubiquitin specific protea... 453 e-127
Alignment gi|XP_536136.2| PREDICTED: similar to ubiquitin-specific protea... 213 2e-55
Alignment gi|XP_535474.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 168 7e-42
Alignment gi|XP_862599.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 168 7e-42
Alignment gi|XP_862575.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 168 7e-42
Alignment gi|XP_531655.2| PREDICTED: similar to ubiquitin specific protea... 162 5e-40
Alignment gi|XP_860508.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 162 5e-40
Alignment gi|XP_860477.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 162 5e-40
Alignment gi|XP_860441.1| PREDICTED: similar to ubiquitin specific protea... 162 5e-40
>ref|XP_859639.1| PREDICTED: similar to ubiquitin specific protease 2 isoform 2 [Canis
familiaris].
Length = 606
Score = 453 bits (1166), Expect = e-127
Identities = 216/221 (97%), Positives = 218/221 (98%)
Frame = +1
Query: 385 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 564
NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS+ HTALMEEF
Sbjct: 260 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSNVHTALMEEF 319
Query: 565 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 744
AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV
Sbjct: 320 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 379
Query: 745 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 924
RPKS+PE LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF
Sbjct: 380 RPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 439
Query: 925 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
WDLSLPIAKRGYPEVTL DCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 440 WDLSLPIAKRGYPEVTLTDCMRLFTKEDVLDGDEKPTCCRC 480
>ref|XP_849718.1| PREDICTED: similar to ubiquitin specific protease 2 isoform 1 [Canis
familiaris].
Length = 606
S
Animal-Genome cDNA 20110601C-013121
Animal-Genome cDNA 20110601C-013121
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013121
(1047 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039728.1| ubiquitin carboxyl-terminal hydrolase 2 [Bos... 447 e-126
Alignment gi|NP_001039841.1| ubiquitin carboxyl-terminal hydrolase 21 [Bo... 214 1e-55
Alignment gi|NP_001069594.1| ubiquitin carboxyl-terminal hydrolase 8 [Bos... 170 2e-42
Alignment gi|NP_001039895.1| ubiquitin carboxyl-terminal hydrolase 15 [Bo... 162 5e-40
Alignment gi|NP_001093789.1| ubiquitin carboxyl-terminal hydrolase 4 [Bos... 157 1e-38
Alignment gi|XP_002695689.1| PREDICTED: ubiquitin specific peptidase 32 [... 150 1e-36
Alignment gi|XP_869385.4| PREDICTED: ubiquitin specific peptidase 32 isof... 150 1e-36
Alignment gi|NP_001073777.1| ubiquitin carboxyl-terminal hydrolase 11 [Bo... 150 2e-36
Alignment gi|XP_002697125.1| PREDICTED: ubiquitin specific peptidase 19 [... 150 2e-36
Alignment gi|XP_592460.3| PREDICTED: ubiquitin thioesterase 19 [Bos tauru... 150 2e-36
>ref|NP_001039728.1| ubiquitin carboxyl-terminal hydrolase 2 [Bos taurus].
Length = 606
Score = 447 bits (1149), Expect = e-126
Identities = 213/221 (96%), Positives = 215/221 (97%)
Frame = +1
Query: 385 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 564
NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY+RDLSHSS AHTALMEEF
Sbjct: 260 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSSRAHTALMEEF 319
Query: 565 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 744
AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRV
Sbjct: 320 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVIA 379
Query: 745 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 924
RPKS+ E LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF
Sbjct: 380 RPKSNTENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 439
Query: 925 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
WDLSLPI KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 440 WDLSLPITKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 480
>ref|NP_001039841.1| ubiquitin carboxyl-terminal hydrolase 21 [Bos taurus].
Length = 565
Score = 214 bits (544), Expect = 1e-55
Identities = 111/232 (47%), Positives = 147/232 (63%), Gaps = 17/232 (7%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQT 582
G GLRNLGNTCF+N++LQCLS+TR LRD+CL+R + +++ A L E FA +I
Sbjct: 210 GHVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQE-LTEAFADVIGA 268
Query: 583 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNR--------V 738
+W + V+P+ F+ Q+Y P F GY+QQDAQEFL+ L++ LH E+NR +
Sbjct: 269 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 328
Query: 739 TVRPKSSPEGLD-------HLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG 897
P P L L DD++ MW++YLEREDS+I DLFVGQLKS L C CG
Sbjct: 329 ASSPAPHPPRLGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 388
Query: 898 YCSTVFDPFWDLSLPIAKRGYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
Y ST F+ F DLSLPI K+G+ +V+L DC LFTKE+ L+ + P C RC
Sbjct: 389 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRC 440
>ref|NP_001069594.1| ubiquitin carboxyl-terminal hydrolase 8 [Bos taurus].
Length = 1085
Score = 170 bits (431), Expect = 2e-42
Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL NT L DY + Y D++ S+ H + EEF
Sbjct: 739 SGPALTGLRNLGNTCYMNSILQCLCNTPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 798
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 799 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 857
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 858 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 917
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 918 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 955
>ref|NP_001039895.1| ubiquitin carboxyl-terminal hydrolase 15 [Bos taurus].
Length = 952
Score = 162 bits (410), Expect = 5e-40
Identities = 83/183 (45%), Positives = 110/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 258 GLCGLSNLGNTCFMNSAFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 317
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 318 KQMW-SGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 376
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 377 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 436
Query: 937 LPI 945
LP+
Sbjct: 437 LPL 439
>ref|NP_001093789.1| ubiquitin carboxyl-terminal hydrolase 4 [Bos taurus].
Length = 963
Score = 157 bits (398), Expect = 1e-38
Identities = 84/183 (45%), Positives = 112/183 (61%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS LQCLSNT L DY L+ Y +++ + + E +A+LI
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S + V+P FKTQ+ R+AP+F GY QQD+QE L FLLDGLH ++NRV +P
Sbjct: 360 KQMW-SGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ + PD ++ W + R DS I D F G KS+L C +C S FDPF L+
Sbjct: 419 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 937 LPI 945
LP+
Sbjct: 479 LPL 481
>ref|XP_002695689.1| PREDICTED: ubiquitin specific peptidase 32 [Bos taurus].
Length = 1543
Score = 150 bits (380), Expect = 1e-36
Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Frame = +1
Query: 400 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS----SAHTALMEEFA 567
+G GL NLGNTCFMNS +QC+SNT+ L Y + ++ +L+ ++ H A +
Sbjct: 670 KGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKC--YG 727
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
L+Q +W+ + +V +P + + I +YAPRF G+ QQD+QE L FLLDGLH ++NRV +
Sbjct: 728 DLVQELWSGTQKNV-APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEK 786
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
P + D PD E + W +L R S + DLF GQL+S + C CG+ S FDPF
Sbjct: 787 PYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFN 846
Query: 928 DLSLPIAKRGY 960
LSLP+ Y
Sbjct: 847 FLSLPLPMDSY 857
>ref|XP_869385.4| PREDICTED: ubiquitin specific peptidase 32 isoform 3 [Bos taurus].
Length = 1543
Score = 150 bits (380), Expect = 1e-36
Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Frame = +1
Query: 400 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS----SAHTALMEEFA 567
+G GL NLGNTCFMNS +QC+SNT+ L Y + ++ +L+ ++ H A +
Sbjct: 670 KGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKC--YG 727
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
L+Q +W+ + +V +P + + I +YAPRF G+ QQD+QE L FLLDGLH ++NRV +
Sbjct: 728 DLVQELWSGTQKNV-APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEK 786
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
P + D PD E + W +L R S + DLF GQL+S + C CG+ S FDPF
Sbjct: 787 PYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFN 846
Query: 928 DLSLPIAKRGY 960
LSLP+ Y
Sbjct: 847 FLSLPLPMDSY 857
>ref|NP_001073777.1| ubiquitin carboxyl-terminal hydrolase 11 [Bos taurus].
Length = 756
Score = 150 bits (379), Expect = 2e-36
Identities = 76/183 (41%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
G+ GL NLGNTCFMNS LQCLSN +L +Y L+ Y+ +L+ + + + +A L+
Sbjct: 100 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLKNRYLEELNFCNPLGMKGEIAQAYADLV 159
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ W+ +V P FKT++ +A +F+GY Q D+QE L FLLDGLH ++NR+ +
Sbjct: 160 KQAWSGHHRSIV-PQVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRIKKKEYV 218
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
PD E ++ W+ + R DS I D F G KS+L C DCG S FDPF LS
Sbjct: 219 ELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLS 278
Query: 937 LPI 945
+P+
Sbjct: 279 VPL 281
>ref|XP_002697125.1| PREDICTED: ubiquitin specific peptidase 19 [Bos taurus].
Length = 1238
Score = 150 bits (378), Expect = 2e-36
Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 2/186 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTA--LMEEFAKLI 576
G GL NLGNTCFMNS++Q LSNTRELRD+ R + ++++++ T L FA L+
Sbjct: 452 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 511
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W + + PS+ K + A +F GY Q DAQEF+ FLLDGLH ++NR+ +P +
Sbjct: 512 RALWKGT-HHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYT 570
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
D PD+ + W+++ R DS I DLF GQ KS L C C S FDPF L
Sbjct: 571 ETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLP 630
Query: 937 LPIAKR 954
+P+ ++
Sbjct: 631 VPLPQK 636
>ref|XP_592460.3| PREDICTED: ubiquitin thioesterase 19 [Bos taurus].
Length = 1238
Score = 150 bits (378), Expect = 2e-36
Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 2/186 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTA--LMEEFAKLI 576
G GL NLGNTCFMNS++Q LSNTRELRD+ R + ++++++ T L FA L+
Sbjct: 452 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 511
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W + + PS+ K + A +F GY Q DAQEF+ FLLDGLH ++NR+ +P +
Sbjct: 512 RALWKGT-HHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYT 570
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
D PD+ + W+++ R DS I DLF GQ KS L C C S FDPF L
Sbjct: 571 ETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLP 630
Query: 937 LPIAKR 954
+P+ ++
Sbjct: 631 VPLPQK 636
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,231,971
Number of extensions: 1017592
Number of successful extensions: 4206
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 56
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
core = 453 bits (1166), Expect = e-127
Identities = 216/221 (97%), Positives = 218/221 (98%)
Frame = +1
Query: 385 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 564
NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS+ HTALMEEF
Sbjct: 260 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSNVHTALMEEF 319
Query: 565 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 744
AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV
Sbjct: 320 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 379
Query: 745 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 924
RPKS+PE LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF
Sbjct: 380 RPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 439
Query: 925 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
WDLSLPIAKRGYPEVTL DCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 440 WDLSLPIAKRGYPEVTLTDCMRLFTKEDVLDGDEKPTCCRC 480
>ref|XP_536136.2| PREDICTED: similar to ubiquitin-specific protease 21 isoform a [Canis
familiaris].
Length = 686
Score = 213 bits (542), Expect = 2e-55
Identities = 110/232 (47%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQT 582
G GLRNLGNTCF+N++LQCLS+TR LRD+CL+R + +++ A L E FA +I
Sbjct: 331 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQE-LTEAFADVIGA 389
Query: 583 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNR--------- 735
+W + V+P+ F+ Q+Y P F GY+QQDAQEFL+ L++ LH E+NR
Sbjct: 390 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 449
Query: 736 ----VTVRPKSSPEGLDH--LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG 897
+P+ L+ L DD++ MW++YLEREDS+I DLFVGQLKS L C CG
Sbjct: 450 ASSPAPAQPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 509
Query: 898 YCSTVFDPFWDLSLPIAKRGYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
Y ST F+ F DLSLPI K+G+ +V+L DC LFTKE+ L+ + P C RC
Sbjct: 510 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRC 561
>ref|XP_535474.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 8
(Ubiquitin thiolesterase 8) (Ubiquitin-specific
processing protease 8) (Deubiquitinating enzyme 8)
(hUBPy) isoform 1 [Canis familiaris].
Length = 1116
Score = 168 bits (426), Expect = 7e-42
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 770 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 829
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 830 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 888
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 889 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 948
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 949 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 986
>ref|XP_862599.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 8
(Ubiquitin thiolesterase 8) (Ubiquitin-specific
processing protease 8) (Deubiquitinating enzyme 8)
(hUBPy) isoform 4 [Canis familiaris].
Length = 1069
Score = 168 bits (426), Expect = 7e-42
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 723 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 782
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 783 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 841
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 842 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 901
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 902 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 939
>ref|XP_862575.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 8
(Ubiquitin thiolesterase 8) (Ubiquitin-specific
processing protease 8) (Deubiquitinating enzyme 8)
(hUBPy) isoform 3 [Canis familiaris].
Length = 1087
Score = 168 bits (426), Expect = 7e-42
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 741 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 800
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 801 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 859
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 860 KRHKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 919
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 920 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 957
>ref|XP_531655.2| PREDICTED: similar to ubiquitin specific protease 15 isoform 1
[Canis familiaris].
Length = 739
Score = 162 bits (410), Expect = 5e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 45 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 104
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 105 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 163
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 164 QLKDADGRPDKIVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 223
Query: 937 LPI 945
LP+
Sbjct: 224 LPL 226
>ref|XP_860508.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15
(Ubiquitin thiolesterase 15) (Ubiquitin-specific
processing protease 15) (Deubiquitinating enzyme 15)
(Unph-2) (Unph4) isoform 11 [Canis familiaris].
Length = 974
Score = 162 bits (410), Expect = 5e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 299 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 358
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 359 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 417
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 418 QLKDADGRPDKIVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 477
Query: 937 LPI 945
LP+
Sbjct: 478 LPL 480
>ref|XP_860477.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15
(Ubiquitin thiolesterase 15) (Ubiquitin-specific
processing protease 15) (Deubiquitinating enzyme 15)
(Unph-2) (Unph4) isoform 10 [Canis familiaris].
Length = 957
Score = 162 bits (410), Expect = 5e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 297 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 356
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 357 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 415
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 416 QLKDADGRPDKIVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 475
Query: 937 LPI 945
LP+
Sbjct: 476 LPL 478
>ref|XP_860441.1| PREDICTED: similar to ubiquitin specific protease 15 isoform 9
[Canis familiaris].
Length = 924
Score = 162 bits (410), Expect = 5e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 249 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 308
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 309 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 367
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 368 QLKDADGRPDKIVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 427
Query: 937 LPI 945
LP+
Sbjct: 428 LPL 430
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,915,033
Number of extensions: 1061530
Number of successful extensions: 4276
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 4154
Number of HSP's successfully gapped: 64
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013121
(1047 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357373.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 471 e-133
Alignment gi|XP_003129987.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 462 e-130
Alignment gi|XP_001927817.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 213 1e-55
Alignment gi|XP_001927765.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 169 3e-42
Alignment gi|XP_001925564.2| PREDICTED: ubiquitin carboxyl-terminal hydro... 162 2e-40
Alignment gi|XP_003126389.2| PREDICTED: ubiquitin carboxyl-terminal hydro... 162 2e-40
Alignment gi|NP_001230117.1| ubiquitin specific peptidase 4 (proto-oncoge... 158 5e-39
Alignment gi|XP_003358481.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 156 2e-38
Alignment gi|XP_003131747.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin ca... 151 7e-37
Alignment gi|XP_003132257.2| PREDICTED: ubiquitin carboxyl-terminal hydro... 150 1e-36
>ref|XP_003357373.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like isoform 2
[Sus scrofa].
Length = 396
Score = 471 bits (1211), Expect = e-133
Identities = 233/270 (86%), Positives = 233/270 (86%)
Frame = +1
Query: 238 MRTSYTVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKAKNSKSAQGLAGL 417
MRTSYTVT NKAKNSKSAQGLAGL
Sbjct: 1 MRTSYTVTLPEEPPAAPFPALAKELRPRSPLSPSLLLSTFVGLLLNKAKNSKSAQGLAGL 60
Query: 418 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQTIWTSS 597
RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQTIWTSS
Sbjct: 61 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQTIWTSS 120
Query: 598 PNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKSSPEGLDH 777
PNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKSSPEGLDH
Sbjct: 121 PNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKSSPEGLDH 180
Query: 778 LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG 957
LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG
Sbjct: 181 LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG 240
Query: 958 YPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
YPEVTLMDCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 241 YPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 270
>ref|XP_003129987.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like isoform 1
[Sus scrofa].
Length = 606
Score = 462 bits (1188), Expect = e-130
Identities = 221/221 (100%), Positives = 221/221 (100%)
Frame = +1
Query: 385 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 564
NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF
Sbjct: 260 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 319
Query: 565 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 744
AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV
Sbjct: 320 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 379
Query: 745 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 924
RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF
Sbjct: 380 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 439
Query: 925 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 440 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 480
>ref|XP_001927817.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 21 isoform 1 [Sus
scrofa].
Length = 565
Score = 213 bits (543), Expect = 1e-55
Identities = 111/232 (47%), Positives = 147/232 (63%), Gaps = 17/232 (7%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQT 582
G GLRNLGNTCF+N++LQCLS+TR LRD+CL+R + +++ A L E FA +I
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQE-LTEAFADVIGA 268
Query: 583 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNR--------V 738
+W + V+P+ F+ Q+Y P F GY+QQDAQEFL+ L++ LH E+NR +
Sbjct: 269 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 328
Query: 739 TVRPKSSPEGLD-------HLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG 897
P SP L DD++ MW++YLEREDS+I DLFVGQLKS L C CG
Sbjct: 329 ASSPAPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 388
Query: 898 YCSTVFDPFWDLSLPIAKRGYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
Y ST F+ F DLSLPI K+G+ +V+L DC LFTKE+ L+ + P C RC
Sbjct: 389 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRC 440
>ref|XP_001927765.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Sus scrofa].
Length = 1117
Score = 169 bits (427), Expect = 3e-42
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 771 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQEDINRSNLLGHKGEVAEEFG 830
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 831 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 889
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 890 KRHKEENNDHLDDFKAAEYAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 949
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 950 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 987
>ref|XP_001925564.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like, partial
[Sus scrofa].
Length = 865
Score = 162 bits (411), Expect = 2e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 171 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 230
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 231 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 289
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 290 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 349
Query: 937 LPI 945
LP+
Sbjct: 350 LPL 352
>ref|XP_003126389.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Sus scrofa].
Length = 746
Score = 162 bits (411), Expect = 2e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 102 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 161
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 162 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 220
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 221 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 280
Query: 937 LPI 945
LP+
Sbjct: 281 LPL 283
>ref|NP_001230117.1| ubiquitin specific peptidase 4 (proto-oncogene) [Sus scrofa].
Length = 963
Score = 158 bits (399), Expect = 5e-39
Identities = 85/192 (44%), Positives = 116/192 (60%), Gaps = 2/192 (1%)
Frame = +1
Query: 376 KAKNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTA 549
++ +S GL GL NLGNTCFMNS LQCLSNT L DY L+ Y +++ +
Sbjct: 291 ESPSSHVQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGE 350
Query: 550 LMEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEV 729
+ E +A+LI+ +W S + V+P FKTQ+ R+AP+F GY QQD+QE L FLLDGLH ++
Sbjct: 351 IAEAYAELIKQMW-SGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDL 409
Query: 730 NRVTVRPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCST 909
NRV +P + + PD ++ W + R DS I D F G KS+L C +C S
Sbjct: 410 NRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKISV 469
Query: 910 VFDPFWDLSLPI 945
FDPF L+LP+
Sbjct: 470 TFDPFCYLTLPL 481
>ref|XP_003358481.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Sus scrofa].
Length = 841
Score = 156 bits (394), Expect = 2e-38
Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 2/192 (1%)
Frame = +1
Query: 376 KAKNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTA 549
++ +S GL GL NLGNTCFMNS LQCLSNT L DY L+ Y +++ +
Sbjct: 473 ESPSSHVQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGE 532
Query: 550 LMEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEV 729
+ E +A+LI+ +W S + V+P KTQ+ R+AP+F GY QQD+QE L FLLDGLH ++
Sbjct: 533 IAEAYAELIKQMW-SGRDAHVAPRNVKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDL 591
Query: 730 NRVTVRPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCST 909
NRV +P + + PD ++ W + R DS I D F G KS+L C +C S
Sbjct: 592 NRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKISV 651
Query: 910 VFDPFWDLSLPI 945
FDPF L+LP+
Sbjct: 652 TFDPFCYLTLPL 663
>ref|XP_003131747.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase
32 [Sus scrofa].
Length = 1123
Score = 151 bits (381), Expect = 7e-37
Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Frame = +1
Query: 400 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS----SAHTALMEEFA 567
+G GL NLGNTCFMNS +QC+SNT+ L Y + ++ +L+ ++ H A +
Sbjct: 645 KGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKC--YG 702
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
L+Q +W+ + +V +P + + I +YAPRF G+ QQD+QE L FLLDGLH ++NRV +
Sbjct: 703 DLVQELWSGTQKNV-APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEK 761
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
P + D PD E + W +L R S + DLF GQL+S + C CG+ S FDPF
Sbjct: 762 PYVELKDSDGRPDWEVAAEAWDNHLRRNKSIVVDLFHGQLRSQVKCKTCGHISVRFDPFN 821
Query: 928 DLSLPIAKRGY 960
LSLP+ Y
Sbjct: 822 FLSLPLPMDSY 832
>ref|XP_003132257.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 19 [Sus scrofa].
Length = 1168
Score = 150 bits (378), Expect = 1e-36
Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 2/186 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTA--LMEEFAKLI 576
G GL NLGNTCFMNS++Q LSNTRELRD+ R + ++++++ T L FA L+
Sbjct: 450 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 509
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W + + PS+ K + A +F GY Q DAQEF+ FLLDGLH ++NR+ +P +
Sbjct: 510 RALWKGT-HHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYT 568
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
D PD+ + W+++ R DS I DLF GQ KS L C C S FDPF L
Sbjct: 569 ETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLP 628
Query: 937 LPIAKR 954
+P+ ++
Sbjct: 629 VPLPQK 634
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,755,037
Number of extensions: 659593
Number of successful extensions: 2726
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 2678
Number of HSP's successfully gapped: 29
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013121
(1047 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932759.1| ubiquitin carboxyl-terminal hydrolase 2 isoform... 457 e-129
Alignment gi|NP_058088.2| ubiquitin carboxyl-terminal hydrolase 2 isoform... 448 e-126
Alignment gi|NP_932760.2| ubiquitin carboxyl-terminal hydrolase 2 isoform... 448 e-126
Alignment gi|NP_038947.2| ubiquitin carboxyl-terminal hydrolase 21 [Mus m... 213 2e-55
Alignment gi|NP_062703.2| ubiquitin carboxyl-terminal hydrolase 8 [Mus mu... 164 1e-40
Alignment gi|NP_081880.2| ubiquitin carboxyl-terminal hydrolase 15 [Mus m... 162 3e-40
Alignment gi|NP_035808.2| ubiquitin carboxyl-terminal hydrolase 4 [Mus mu... 159 3e-39
Alignment gi|NP_001025105.1| ubiquitin specific protease 32 [Mus musculus]. 150 1e-36
Alignment gi|NP_001161844.1| ubiquitin carboxyl-terminal hydrolase 19 iso... 150 2e-36
Alignment gi|NP_663382.2| ubiquitin carboxyl-terminal hydrolase 19 isofor... 150 2e-36
>ref|NP_932759.1| ubiquitin carboxyl-terminal hydrolase 2 isoform Usp2-45 [Mus
musculus].
Length = 396
Score = 457 bits (1176), Expect = e-129
Identities = 224/270 (82%), Positives = 229/270 (84%)
Frame = +1
Query: 238 MRTSYTVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKAKNSKSAQGLAGL 417
MRTSYTVT NKAKNSKSAQGLAGL
Sbjct: 1 MRTSYTVTLPEEPPAAHFPALAKELRPRSPLSPSLLLSTFVGLLLNKAKNSKSAQGLAGL 60
Query: 418 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQTIWTSS 597
RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL H+SSAHTALMEEFAKLIQTIWTSS
Sbjct: 61 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEFAKLIQTIWTSS 120
Query: 598 PNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKSSPEGLDH 777
PNDVVSPSEFKTQIQRYAPRF+GYNQQDAQEFLRFLLDGLHNEVNRV RPK+SPE LDH
Sbjct: 121 PNDVVSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAARPKASPETLDH 180
Query: 778 LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG 957
LPD+EKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG
Sbjct: 181 LPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG 240
Query: 958 YPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
YPEVTLMDCMRLFTKED+LDGDEKPTCCRC
Sbjct: 241 YPEVTLMDCMRLFTKEDILDGDEKPTCCRC 270
>ref|NP_058088.2| ubiquitin carboxyl-terminal hydrolase 2 isoform Usp2-69 [Mus
musculus].
Length = 619
Score = 448 bits (1153), Expect = e-126
Identities = 212/221 (95%), Positives = 217/221 (98%)
Frame = +1
Query: 385 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 564
NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL H+SSAHTALMEEF
Sbjct: 273 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEF 332
Query: 565 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 744
AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRF+GYNQQDAQEFLRFLLDGLHNEVNRV
Sbjct: 333 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAA 392
Query: 745 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 924
RPK+SPE LDHLPD+EKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF
Sbjct: 393 RPKASPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 452
Query: 925 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
WDLSLPIAKRGYPEVTLMDCMRLFTKED+LDGDEKPTCCRC
Sbjct: 453 WDLSLPIAKRGYPEVTLMDCMRLFTKEDILDGDEKPTCCRC 493
>ref|NP_932760.2| ubiquitin carboxyl-terminal hydrolase 2 isoform Usp2-69 [Mus
musculus].
Length = 619
Score = 448 bits (1153), Expect = e-126
Identities = 212/221 (95%), Positives = 217/221 (98%)
Frame = +1
Query: 385 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 564
NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL H+SSAHTALMEEF
Sbjct: 273 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEF 332
Query: 565 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 744
AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRF+GYNQQDAQEFLRFLLDGLHNEVNRV
Sbjct: 333 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAA 392
Query: 745 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 924
RPK+SPE LDHLPD+EKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF
Sbjct: 393 RPKASPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 452
Query: 925 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
WDLSLPIAKRGYPEVTLMDCMRLFTKED+LDGDEKPTCCRC
Sbjct: 453 WDLSLPIAKRGYPEVTLMDCMRLFTKEDILDGDEKPTCCRC 493
>ref|NP_038947.2| ubiquitin carboxyl-terminal hydrolase 21 [Mus musculus].
Length = 566
Score = 213 bits (543), Expect = 2e-55
Identities = 114/233 (48%), Positives = 149/233 (63%), Gaps = 18/233 (7%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQT 582
G GLRNLGNTCF+N++LQCLS+TR LRD+CL+R + +++ A L E FA +I
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQE-LTEAFADVIGA 268
Query: 583 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR----- 747
+W + V+P+ F+ Q+Y P F GY+QQDAQEFL+ L++ LH E+NR R
Sbjct: 269 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 328
Query: 748 ---PKSSPE----GLDH----LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDC 894
P SP G H L DD++ MW++YLEREDS+I DLFVGQLKS L C C
Sbjct: 329 ASGPVPSPPCRGGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQAC 388
Query: 895 GYCSTVFDPFWDLSLPIAKRGYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
GY ST F+ F DLSLPI K+G+ +V+L DC LFTKE+ L+ + P C RC
Sbjct: 389 GYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPVCDRC 441
>ref|NP_062703.2| ubiquitin carboxyl-terminal hydrolase 8 [Mus musculus].
Length = 1080
Score = 164 bits (414), Expect = 1e-40
Identities = 89/220 (40%), Positives = 126/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 734 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 793
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F G +QQD+QE L FL+DGLH ++N+ R
Sbjct: 794 IIMKALWTGQYR-YISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 852
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E +HL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 853 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 912
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 913 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 950
>ref|NP_081880.2| ubiquitin carboxyl-terminal hydrolase 15 [Mus musculus].
Length = 981
Score = 162 bits (411), Expect = 3e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 287 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 346
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 347 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 405
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 406 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 465
Query: 937 LPI 945
LP+
Sbjct: 466 LPL 468
>ref|NP_035808.2| ubiquitin carboxyl-terminal hydrolase 4 [Mus musculus].
Length = 962
Score = 159 bits (403), Expect = 3e-39
Identities = 83/183 (45%), Positives = 113/183 (61%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS LQCLSNT L +Y L+ Y +++ + + E +A+LI
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S + V+P FKTQ+ R+AP+F GY QQD+QE L F+LDGLH ++NRV +P
Sbjct: 360 KQMW-SGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYL 418
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
P+ + PD ++ W + R DS I D F G KS+L C +C S FDPF L+
Sbjct: 419 EPKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 937 LPI 945
LP+
Sbjct: 479 LPL 481
>ref|NP_001025105.1| ubiquitin specific protease 32 [Mus musculus].
Length = 1604
Score = 150 bits (380), Expect = 1e-36
Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Frame = +1
Query: 400 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS----SAHTALMEEFA 567
+G GL NLGNTCFMNS +QC+SNT+ L Y + ++ +L+ ++ H A +
Sbjct: 731 KGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKC--YG 788
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
L+Q +W+ + +V +P + + I +YAPRF G+ QQD+QE L FLLDGLH ++NRV +
Sbjct: 789 DLVQELWSGTQKNV-APLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEK 847
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
P + D PD E + W +L R S + DLF GQL+S + C CG+ S FDPF
Sbjct: 848 PYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFN 907
Query: 928 DLSLPIAKRGY 960
LSLP+ Y
Sbjct: 908 FLSLPLPMDSY 918
>ref|NP_001161844.1| ubiquitin carboxyl-terminal hydrolase 19 isoform 3 [Mus musculus].
Length = 1323
Score = 150 bits (379), Expect = 2e-36
Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 2/186 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTA--LMEEFAKLI 576
G GL NLGNTCFMNS++Q LSNTRELRD+ R + ++++++ T L FA L+
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W + + PS+ K + A +F GY Q DAQEF+ FLLDGLH ++NR+ +P +
Sbjct: 597 RALWKGT-HQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYT 655
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
D PD+ + W+++ R DS I DLF GQ KS L C C S FDPF L
Sbjct: 656 ETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLP 715
Query: 937 LPIAKR 954
+P+ ++
Sbjct: 716 VPLPQK 721
>ref|NP_663382.2| ubiquitin carboxyl-terminal hydrolase 19 isoform 5 [Mus musculus].
Length = 1299
Score = 150 bits (379), Expect = 2e-36
Identities = 78/186 (41%), Positives = 111/186 (59%), Gaps = 2/186 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTA--LMEEFAKLI 576
G GL NLGNTCFMNS++Q LSNTRELRD+ R + ++++++ T L FA L+
Sbjct: 513 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 572
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W + + PS+ K + A +F GY Q DAQEF+ FLLDGLH ++NR+ +P +
Sbjct: 573 RALWKGT-HQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYT 631
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
D PD+ + W+++ R DS I DLF GQ KS L C C S FDPF L
Sbjct: 632 ETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLP 691
Query: 937 LPIAKR 954
+P+ ++
Sbjct: 692 VPLPQK 697
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,310,038
Number of extensions: 844591
Number of successful extensions: 3210
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3128
Number of HSP's successfully gapped: 43
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013121
(1047 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_741994.1| ubiquitin carboxyl-terminal hydrolase 2 isoform... 460 e-129
Alignment gi|NP_001230688.1| ubiquitin carboxyl-terminal hydrolase 2 isof... 453 e-127
Alignment gi|NP_004196.4| ubiquitin carboxyl-terminal hydrolase 2 isoform... 451 e-127
Alignment gi|NP_001014443.1| ubiquitin carboxyl-terminal hydrolase 21 [Ho... 213 2e-55
Alignment gi|NP_036607.3| ubiquitin carboxyl-terminal hydrolase 21 [Homo ... 213 2e-55
Alignment gi|NP_001122083.1| ubiquitin carboxyl-terminal hydrolase 8 [Hom... 168 9e-42
Alignment gi|NP_001122082.1| ubiquitin carboxyl-terminal hydrolase 8 [Hom... 168 9e-42
Alignment gi|NP_005145.3| ubiquitin carboxyl-terminal hydrolase 8 [Homo s... 168 9e-42
Alignment gi|NP_006304.1| ubiquitin carboxyl-terminal hydrolase 15 [Homo ... 162 4e-40
Alignment gi|NP_003354.2| ubiquitin carboxyl-terminal hydrolase 4 isoform... 157 1e-38
>ref|NP_741994.1| ubiquitin carboxyl-terminal hydrolase 2 isoform b [Homo sapiens].
Length = 396
Score = 460 bits (1183), Expect = e-129
Identities = 226/270 (83%), Positives = 230/270 (85%)
Frame = +1
Query: 238 MRTSYTVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKAKNSKSAQGLAGL 417
MRTSYTVT NKAKNSKSAQGLAGL
Sbjct: 1 MRTSYTVTLPEDPPAAPFPALAKELRPRSPLSPSLLLSTFVGLLLNKAKNSKSAQGLAGL 60
Query: 418 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQTIWTSS 597
RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL H S+AHTAL+EEFAKLIQTIWTSS
Sbjct: 61 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS 120
Query: 598 PNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKSSPEGLDH 777
PNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVT+RPKS+PE LDH
Sbjct: 121 PNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDH 180
Query: 778 LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG 957
LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG
Sbjct: 181 LPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG 240
Query: 958 YPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
YPEVTLMDCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 241 YPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 270
>ref|NP_001230688.1| ubiquitin carboxyl-terminal hydrolase 2 isoform c [Homo sapiens].
Length = 362
Score = 453 bits (1165), Expect = e-127
Identities = 215/224 (95%), Positives = 220/224 (98%)
Frame = +1
Query: 376 KAKNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALM 555
K +NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL H S+AHTAL+
Sbjct: 13 KRQNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALV 72
Query: 556 EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNR 735
EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNR
Sbjct: 73 EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNR 132
Query: 736 VTVRPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVF 915
VT+RPKS+PE LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVF
Sbjct: 133 VTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVF 192
Query: 916 DPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
DPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 193 DPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 236
>ref|NP_004196.4| ubiquitin carboxyl-terminal hydrolase 2 isoform a [Homo sapiens].
Length = 605
Score = 451 bits (1160), Expect = e-127
Identities = 214/221 (96%), Positives = 218/221 (98%)
Frame = +1
Query: 385 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEF 564
NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL H S+AHTAL+EEF
Sbjct: 259 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEF 318
Query: 565 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTV 744
AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVT+
Sbjct: 319 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTL 378
Query: 745 RPKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 924
RPKS+PE LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF
Sbjct: 379 RPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 438
Query: 925 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC
Sbjct: 439 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 479
>ref|NP_001014443.1| ubiquitin carboxyl-terminal hydrolase 21 [Homo sapiens].
Length = 565
Score = 213 bits (542), Expect = 2e-55
Identities = 112/232 (48%), Positives = 147/232 (63%), Gaps = 17/232 (7%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQT 582
G GLRNLGNTCF+N++LQCLS+TR LRD+CL+R + +++ A L E FA +I
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQE-LTEAFADVIGA 268
Query: 583 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR----- 747
+W + V+P+ F+ Q+Y P F GY+QQDAQEFL+ L++ LH E+NR R
Sbjct: 269 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 328
Query: 748 ---PKSSPEGLD-------HLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG 897
P SP L DD++ MW++YLEREDS+I DLFVGQLKS L C CG
Sbjct: 329 ANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 388
Query: 898 YCSTVFDPFWDLSLPIAKRGYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
Y ST F+ F DLSLPI K+G+ +V+L DC LFTKE+ L+ + P C RC
Sbjct: 389 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRC 440
>ref|NP_036607.3| ubiquitin carboxyl-terminal hydrolase 21 [Homo sapiens].
Length = 565
Score = 213 bits (542), Expect = 2e-55
Identities = 112/232 (48%), Positives = 147/232 (63%), Gaps = 17/232 (7%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSSAHTALMEEFAKLIQT 582
G GLRNLGNTCF+N++LQCLS+TR LRD+CL+R + +++ A L E FA +I
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQE-LTEAFADVIGA 268
Query: 583 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR----- 747
+W + V+P+ F+ Q+Y P F GY+QQDAQEFL+ L++ LH E+NR R
Sbjct: 269 LWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPIL 328
Query: 748 ---PKSSPEGLD-------HLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG 897
P SP L DD++ MW++YLEREDS+I DLFVGQLKS L C CG
Sbjct: 329 ANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACG 388
Query: 898 YCSTVFDPFWDLSLPIAKRGYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
Y ST F+ F DLSLPI K+G+ +V+L DC LFTKE+ L+ + P C RC
Sbjct: 389 YRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRC 440
>ref|NP_001122083.1| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens].
Length = 1118
Score = 168 bits (425), Expect = 9e-42
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 772 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 831
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 832 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 951 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 988
>ref|NP_001122082.1| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens].
Length = 1118
Score = 168 bits (425), Expect = 9e-42
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 772 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 831
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 832 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 951 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 988
>ref|NP_005145.3| ubiquitin carboxyl-terminal hydrolase 8 [Homo sapiens].
Length = 1118
Score = 168 bits (425), Expect = 9e-42
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 2/220 (0%)
Frame = +1
Query: 394 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSSS-AHTA-LMEEFA 567
S L GLRNLGNTC+MNSILQCL N L DY + Y D++ S+ H + EEF
Sbjct: 772 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 831
Query: 568 KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVR 747
+++ +WT +SP +FK I + +F GY+QQD+QE L FL+DGLH ++N+ R
Sbjct: 832 IIMKALWTGQYR-YISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890
Query: 748 PKSSPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 927
+ E DHL D + W+K+ + +S I LF GQ KS++ C C S F+ F
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950
Query: 928 DLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRC 1047
LSLP+A + TL DC+RLF+KE+ L + + C C
Sbjct: 951 YLSLPLASTS--KCTLQDCLRLFSKEEKLTDNNRFYCSHC 988
>ref|NP_006304.1| ubiquitin carboxyl-terminal hydrolase 15 [Homo sapiens].
Length = 952
Score = 162 bits (411), Expect = 4e-40
Identities = 83/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS +QCLSNT L +Y L Y +L+ + + + +A+LI
Sbjct: 258 GLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELI 317
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S V+P FKTQ+ R+AP+F GY QQD QE L FLLDGLH ++NR+ +P
Sbjct: 318 KQMW-SGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYI 376
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ D PD + W +L+R DS I D+F G KS+L C +C S FDPF L+
Sbjct: 377 QLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLT 436
Query: 937 LPI 945
LP+
Sbjct: 437 LPL 439
>ref|NP_003354.2| ubiquitin carboxyl-terminal hydrolase 4 isoform a [Homo sapiens].
Length = 963
Score = 157 bits (398), Expect = 1e-38
Identities = 84/183 (45%), Positives = 112/183 (61%), Gaps = 2/183 (1%)
Frame = +1
Query: 403 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLSHSS--SAHTALMEEFAKLI 576
GL GL NLGNTCFMNS LQCLSNT L DY L+ Y +++ + + E +A+LI
Sbjct: 300 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELI 359
Query: 577 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTVRPKS 756
+ +W S + V+P FKTQ+ R+AP+F GY QQD+QE L FLLDGLH ++NRV +P
Sbjct: 360 KQMW-SGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 757 SPEGLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 936
+ + PD ++ W + R DS I D F G KS+L C +C S FDPF L+
Sbjct: 419 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 937 LPI 945
LP+
Sbjct: 479 LPL 481
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,999,109
Number of extensions: 1025980
Number of successful extensions: 3939
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 3830
Number of HSP's successfully gapped: 69
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013121
(1047 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 708 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 708 bits (357), Expect = 0.0
Identities = 373/381 (97%)
Strand = Plus / Minus
Query: 4 agtcggccggagcgctagagcggggaccggggcggttggccgcgcgcgccggggaggttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51603686 agtcggccggagcgctagagcggggaccggggcggttggccgcgcgcgccggggaggttg 51603627
Query: 64 aggcggaggagcgcgcggtcggcccgccgtagcggttaccgctgggcgccgcggacggtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51603626 aggcggaggagcgcgcggtcggcccgccgtagcggttaccgctgggcgccgcggacggtg 51603567
Query: 124 tcttgtggctgcctcgccggcttgggcgtccgggccgtgagaccgcgcggtactgccccg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51603566 tcttgtggctgcctcgccggcttgggcgtccgggccgtgagaccgcgcggtactgccccg 51603507
Query: 184 cgccctcttggccaacgttaggcgaggggccgagcccgnnnnnnnntccccagcatgcgc 243
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 51603506 cgccctcttggccaacgttaggcgaggggccgagcccgcccccccctccccagcatgcgc 51603447
Query: 244 acctcgtacaccgtgaccctgcccgaggagccccccgccgccccctttcctgccctcgcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51603446 acctcgtacaccgtgaccctgcccgaggagccccccgccgccccctttcctgccctcgcc 51603387
Query: 304 aaggagctgcggccgcgatcccctctctccccttccctgctgctctccaccttcgtgggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51603386 aaggagctgcggccgcgatcccctctctccccttccctgctgctctccaccttcgtgggg 51603327
Query: 364 ctcctgctcaacaaagccaag 384
|||||||||||||||||||||
Sbjct: 51603326 ctcctgctcaacaaagccaag 51603306
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 435 gtgcttcatgaactccatcctgcagtgcctgagcaacacccgggagctgagagactactg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51599479 gtgcttcatgaactccatcctgcagtgcctgagcaacacccgggagctgagagactactg 51599420
Query: 495 cctccagaggctctacatgcgggacctcagccacagcagcagtgcacacacggccctcat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51599419 cctccagaggctctacatgcgggacctcagccacagcagcagtgcacacacggccctcat 51599360
Query: 555 ggaag 559
|||||
Sbjct: 51599359 ggaag 51599355
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 558 agagtttgcaaaactaatccagaccatatggacctcatcccccaatgatgtggtgagccc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51599199 agagtttgcaaaactaatccagaccatatggacctcatcccccaatgatgtggtgagccc 51599140
Query: 618 ctctgagttcaagacccagatccagagatacgcaccgcgcttcgtcggctataa 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51599139 ctctgagttcaagacccagatccagagatacgcaccgcgcttcgtcggctataa 51599086
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 672 tcagcaggacgctcaggagtttcttcgcttccttctggatgggctccacaacgaggtgaa 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51598988 tcagcaggacgctcaggagtttcttcgcttccttctggatgggctccacaacgaggtgaa 51598929
Query: 732 ccgggtcacagtgaggcccaagtccagtcccgagggcctcgaccatctccc 782
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51598928 ccgggtcacagtgaggcccaagtccagtcccgagggcctcgaccatctccc 51598878
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 847 gatctctttgttgggcagctgaagagctccctgacgtgtacggattgtggttactgttct 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51598477 gatctctttgttgggcagctgaagagctccctgacgtgtacggattgtggttactgttct 51598418
Query: 907 acagtctttgaccccttctgggacctctccctgcccattgctaag 951
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51598417 acagtctttgaccccttctgggacctctccctgcccattgctaag 51598373
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 950 agcgaggttatcccgaggtgactctaatggattgcatgaggctcttcaccaaagaggatg 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51598286 agcgaggttatcccgaggtgactctaatggattgcatgaggctcttcaccaaagaggatg 51598227
Query: 1010 tgctggatggcgacgagaa 1028
|||||||||||||||||||
Sbjct: 51598226 tgctggatggcgacgagaa 51598208
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 783 tgatgatgagaaagggcgccagatgtggaggaaatatctagaacgggaagacagtcggat 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51598722 tgatgatgagaaagggcgccagatgtggaggaaatatctagaacgggaagacagtcggat 51598663
Query: 843 cgggg 847
|||||
Sbjct: 51598662 cgggg 51598658
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 383 agaactctaagagcgcccagggtctggctggtcttcgaaaccttgggaacacg 435
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51600055 agaactctaagagcgcccagggtctggctggtcttcgaaaccttgggaacacg 51600003
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,781,982
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 9
Length of query: 1047
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1026
Effective length of database: 2,808,413,156
Effective search space: 2881431898056
Effective search space used: 2881431898056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)