Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013126
(1048 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776573.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 531 e-151
Alignment gi|NP_001094619.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 337 1e-92
Alignment gi|NP_001180184.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 332 3e-91
Alignment gi|XP_002698247.1| PREDICTED: procollagen-lysine, 2-oxoglutarat... 332 3e-91
>ref|NP_776573.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Bos
taurus].
Length = 726
Score = 531 bits (1367), Expect = e-151
Identities = 266/298 (89%), Positives = 273/298 (91%), Gaps = 1/298 (0%)
Frame = +3
Query: 141 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASSGGGLK 320
ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDW + +GGGLK
Sbjct: 17 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWPGEAMLAGGGLK 76
Query: 321 VRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR 497
VRLLKKALEKHAD ENLVILFTDSYDVVFASGPRELLKKFRQA+SQVVFSAEELIYPDRR
Sbjct: 77 VRLLKKALEKHADKENLVILFTDSYDVVFASGPRELLKKFRQARSQVVFSAEELIYPDRR 136
Query: 498 LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN 677
LEA YP VSDGKRFLGSGGFIGYAPNL KLVAEWEGQDSDSDQLFYTKIFLDPEKRE+IN
Sbjct: 137 LEANYPVVSDGKRFLGSGGFIGYAPNLIKLVAEWEGQDSDSDQLFYTKIFLDPEKREQIN 196
Query: 678 ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 857
ITLDHRCRIFQN GALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI
Sbjct: 197 ITLDHRCRIFQNFHGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 256
Query: 858 PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
PRFWTFETGC+VCDEGLRSLKGIGDEALP VLVG+FIEQPTP YP+
Sbjct: 257 PRFWTFETGCAVCDEGLRSLKGIGDEALPAVLVGVFIEQPTPFLSLFFQRLLLLHYPQ 314
>ref|NP_001094619.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Bos taurus].
Length = 762
Score = 337 bits (863), Expect = 1e-92
Identities = 160/303 (52%), Positives = 222/303 (73%), Gaps = 3/303 (0%)
Frame = +3
Query: 147 KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLK 320
K + P D LLV+TVATKE++GF RF +SA++FNY ++ LG GE+W + + GGG K
Sbjct: 34 KPSSIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINTIGGGQK 93
Query: 321 VRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR 497
VRL+K+ +E +A+ E+LV+LFT+ ++V+FA GP E+LKKF+++ +VVF+A+ +++PD+R
Sbjct: 94 VRLMKEIMEHYANQEDLVVLFTECFNVIFAGGPEEVLKKFQKSNHKVVFAADGILWPDKR 153
Query: 498 LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN 677
L KYP V GKR+L SGGFIGYAP ++++V +W QD+D DQLFYTKI++DP KRE IN
Sbjct: 154 LADKYPIVHIGKRYLNSGGFIGYAPYINRIVQQWNLQDNDDDQLFYTKIYIDPLKREAIN 213
Query: 678 ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 857
ITLDH+C+IFQ L+GA+DEVVLKFE G+ RA+N+ Y+TLPV+I+GNGPTK+ LNY GNYI
Sbjct: 214 ITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNVFYETLPVMINGNGPTKILLNYFGNYI 273
Query: 858 PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPRNG 1037
P WT + GC+ C+ L + + P V +G+FIEQPTP YP+
Sbjct: 274 PNAWTQDNGCTFCEVDTIDLSAV--DVYPNVTIGVFIEQPTPFLPRFLNTLLTLDYPKEA 331
Query: 1038 CGF 1046
F
Sbjct: 332 LKF 334
>ref|NP_001180184.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [Bos taurus].
Length = 751
Score = 332 bits (851), Expect = 3e-91
Identities = 162/290 (55%), Positives = 213/290 (73%), Gaps = 3/290 (1%)
Frame = +3
Query: 168 DNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKVRLLKKA 341
+ +LV+TVAT ETEG+RRF +SA+FFNY ++ LGLGE+W + + GGG KVR LKK
Sbjct: 50 EKMLVITVATAETEGYRRFLQSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKE 109
Query: 342 LEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKYPA 518
+EK+A+ E++VI+F DSYDVV A P ELLKKF Q+ S+++FSAE +P+ L +YP
Sbjct: 110 MEKYAEREDMVIMFVDSYDVVLAGSPSELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPE 169
Query: 519 VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDHRC 698
V GKRFL SGGFIG+AP + ++V +W+ +D D DQLFYT+++LDP RE++ ++LDH+
Sbjct: 170 VGTGKRFLNSGGFIGFAPTIHQIVRQWKYKDDDDDQLFYTRLYLDPGLREKLGLSLDHKS 229
Query: 699 RIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFE 878
RIFQNL+GALDEVVLKF +VR RN+AYDTLPV++HGNGPTKLQLNYLGNY+P WT E
Sbjct: 230 RIFQNLNGALDEVVLKFGRNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLGNYVPNGWTPE 289
Query: 879 TGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYP 1028
GC C++G R L G + P VL+ +F+EQPTP YP
Sbjct: 290 GGCGFCNQGRRPLP--GGQPPPRVLLAVFVEQPTPFLPRFLQRLLLLDYP 337
>ref|XP_002698247.1| PREDICTED: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Bos
taurus].
Length = 751
Score = 332 bits (851), Expect = 3e-91
Identities = 162/290 (55%), Positives = 213/290 (73%), Gaps = 3/290 (1%)
Frame = +3
Query: 168 DNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKVRLLKKA 341
+ +LV+TVAT ETEG+RRF +SA+FFNY ++ LGLGE+W + + GGG KVR LKK
Sbjct: 50 EKMLVITVATAETEGYRRFLQSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKE 109
Query: 342 LEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKYPA 518
+EK+A+ E++VI+F DSYDVV A P ELLKKF Q+ S+++FSAE +P+ L +YP
Sbjct: 110 MEKYAEREDMVIMFVDSYDVVLAGSPSELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPE 169
Query: 519 VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDHRC 698
V GKRFL SGGFIG+AP + ++V +W+ +D D DQLFYT+++LDP RE++ ++LDH+
Sbjct: 170 VGTGKRFLNSGGFIGFAPTIHQIVRQWKYKDDDDDQLFYTRLYLDPGLREKLGLSLDHKS 229
Query: 699 RIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFE 878
RIFQNL+GALDEVVLKF +VR RN+AYDTLPV++HGNGPTKLQLNYLGNY+P WT E
Sbjct: 230 RIFQNLNGALDEVVLKFGRNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLGNYVPNGWTPE 289
Query: 879 TGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYP 1028
GC C++G R L G + P VL+ +F+EQPTP YP
Sbjct: 290 GGCGFCNQGRRPLP--GGQPPPRVLLAVFVEQPTPFLPRFLQRLLLLDYP 337
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,173,024
Number of extensions: 1140545
Number of successful extensions: 5225
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5179
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013126
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013126
(1048 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865470.1| PREDICTED: similar to Procollagen-lysine,2-oxog... 531 e-151
Alignment gi|XP_544565.2| PREDICTED: similar to Procollagen-lysine,2-oxog... 531 e-151
Alignment gi|XP_865452.1| PREDICTED: similar to Procollagen-lysine,2-oxog... 526 e-149
Alignment gi|XP_542822.2| PREDICTED: similar to procollagen-lysine, 2-oxo... 338 7e-93
Alignment gi|XP_536856.2| PREDICTED: similar to procollagen-lysine, 2-oxo... 330 1e-90
Alignment gi|XP_858413.1| PREDICTED: similar to procollagen-lysine, 2-oxo... 330 1e-90
>ref|XP_865470.1| PREDICTED: similar to Procollagen-lysine,2-oxoglutarate 5-dioxygenase
1 precursor (Lysyl hydroxylase 1) (LH1) isoform 3 [Canis
familiaris].
Length = 728
Score = 531 bits (1368), Expect = e-151
Identities = 267/299 (89%), Positives = 276/299 (92%), Gaps = 2/299 (0%)
Frame = +3
Query: 141 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWN-EKEASSGGGL 317
E KGDA+PEDNLLVLTVAT ETEGFRRFKRS QFFNYKIQALGLGEDW EK S+GGGL
Sbjct: 17 EAKGDARPEDNLLVLTVATTETEGFRRFKRSGQFFNYKIQALGLGEDWTGEKGTSAGGGL 76
Query: 318 KVRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDR 494
KVRLLKKALEKHAD E+LVILFTDSYDVVFASGPRELLKKFRQA+ QVVFSAEELIYPDR
Sbjct: 77 KVRLLKKALEKHADKEDLVILFTDSYDVVFASGPRELLKKFRQARGQVVFSAEELIYPDR 136
Query: 495 RLEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERI 674
RLEAKYPAVSDGKRFLGSGGFIGYAP+LSKLVAEWEGQDSDSDQLFYT+IFLDPEKRERI
Sbjct: 137 RLEAKYPAVSDGKRFLGSGGFIGYAPSLSKLVAEWEGQDSDSDQLFYTQIFLDPEKRERI 196
Query: 675 NITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 854
NITLDHRCRIFQNLDGALDEVVLKFEMG VRARNLAYDTLPVLIHGNGPTKLQLNYLGNY
Sbjct: 197 NITLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 256
Query: 855 IPRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
IPRFWTFETGCSVCDEGLRSL+GIG+EALPTVLVG+FIEQPTP YPR
Sbjct: 257 IPRFWTFETGCSVCDEGLRSLRGIGEEALPTVLVGVFIEQPTPFLSLFFRRLLHLHYPR 315
>ref|XP_544565.2| PREDICTED: similar to Procollagen-lysine,2-oxoglutarate 5-dioxygenase
1 precursor (Lysyl hydroxylase 1) (LH1) isoform 1 [Canis
familiaris].
Length = 727
Score = 531 bits (1368), Expect = e-151
Identities = 267/299 (89%), Positives = 276/299 (92%), Gaps = 2/299 (0%)
Frame = +3
Query: 141 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWN-EKEASSGGGL 317
E KGDA+PEDNLLVLTVAT ETEGFRRFKRS QFFNYKIQALGLGEDW EK S+GGGL
Sbjct: 17 EAKGDARPEDNLLVLTVATTETEGFRRFKRSGQFFNYKIQALGLGEDWTGEKGTSAGGGL 76
Query: 318 KVRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDR 494
KVRLLKKALEKHAD E+LVILFTDSYDVVFASGPRELLKKFRQA+ QVVFSAEELIYPDR
Sbjct: 77 KVRLLKKALEKHADKEDLVILFTDSYDVVFASGPRELLKKFRQARGQVVFSAEELIYPDR 136
Query: 495 RLEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERI 674
RLEAKYPAVSDGKRFLGSGGFIGYAP+LSKLVAEWEGQDSDSDQLFYT+IFLDPEKRERI
Sbjct: 137 RLEAKYPAVSDGKRFLGSGGFIGYAPSLSKLVAEWEGQDSDSDQLFYTQIFLDPEKRERI 196
Query: 675 NITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 854
NITLDHRCRIFQNLDGALDEVVLKFEMG VRARNLAYDTLPVLIHGNGPTKLQLNYLGNY
Sbjct: 197 NITLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 256
Query: 855 IPRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
IPRFWTFETGCSVCDEGLRSL+GIG+EALPTVLVG+FIEQPTP YPR
Sbjct: 257 IPRFWTFETGCSVCDEGLRSLRGIGEEALPTVLVGVFIEQPTPFLSLFFRRLLHLHYPR 315
>ref|XP_865452.1| PREDICTED: similar to Procollagen-lysine,2-oxoglutarate 5-dioxygenase
1 precursor (Lysyl hydroxylase 1) (LH1) isoform 2 [Canis
familiaris].
Length = 744
Score = 526 bits (1354), Expect = e-149
Identities = 267/299 (89%), Positives = 275/299 (91%), Gaps = 2/299 (0%)
Frame = +3
Query: 141 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWN-EKEASSGGGL 317
E KGDA+PEDNLLVLTVAT ETEGFRRFKRS QFFNYKIQALGLGEDW EK S+GGGL
Sbjct: 17 EAKGDARPEDNLLVLTVATTETEGFRRFKRSGQFFNYKIQALGLGEDWTGEKGTSAGGGL 76
Query: 318 KVRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDR 494
KVRLLKKALEKHAD E+LVILFTDSYDVVFASGPRELLKKFRQA+ QVVFSAEELIYPDR
Sbjct: 77 KVRLLKKALEKHADKEDLVILFTDSYDVVFASGPRELLKKFRQARGQVVFSAEELIYPDR 136
Query: 495 RLEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERI 674
RLEAKYPAVSDGKRFLGSGGFIGYAP+LSKLVAEWEGQDSDSDQLFYT+IFLDPEKRERI
Sbjct: 137 RLEAKYPAVSDGKRFLGSGGFIGYAPSLSKLVAEWEGQDSDSDQLFYTQIFLDPEKRERI 196
Query: 675 NITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 854
NITLDHRCRIFQNLDGALDEVVLKFEMG VRARNLAYDTLPVLIHGNGPTKLQLNYLGNY
Sbjct: 197 NITLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 256
Query: 855 IPRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
IPRFWTFETGCSVCDEGLRSL+GIG EALPTVLVG+FIEQPTP YPR
Sbjct: 257 IPRFWTFETGCSVCDEGLRSLRGIG-EALPTVLVGVFIEQPTPFLSLFFRRLLHLHYPR 314
>ref|XP_542822.2| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate
5-dioxygenase 2 isoform b precursor [Canis familiaris].
Length = 745
Score = 338 bits (866), Expect = 7e-93
Identities = 159/293 (54%), Positives = 220/293 (75%), Gaps = 3/293 (1%)
Frame = +3
Query: 162 PEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEA--SSGGGLKVRLLK 335
P D LLV+TVATKE++GF RF +SA++FNY ++ LG GE+W + S GGG KVRL+K
Sbjct: 43 PADKLLVITVATKESDGFHRFMQSARYFNYTVKVLGQGEEWRGGDGINSIGGGQKVRLMK 102
Query: 336 KALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKY 512
+ +E +A+ E+LV+LFT+ ++V+FA GP E+LKKF+++ +VVF+A+ +++PD+RL KY
Sbjct: 103 EVMEHYANQEDLVVLFTECFNVIFAGGPEEVLKKFQKSNHKVVFAADGILWPDKRLADKY 162
Query: 513 PAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDH 692
P V GKR+L SGGFIGYAPN++++V +W QD+D DQLFYTKI++DP KRE INITLDH
Sbjct: 163 PIVHIGKRYLNSGGFIGYAPNINQIVQQWNLQDNDDDQLFYTKIYIDPLKREAINITLDH 222
Query: 693 RCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWT 872
+C+IFQ L+GA+DEVVLKFE G+ RA+N+ Y+TLPV ++GNGPTK+ LNY GNY+P WT
Sbjct: 223 KCKIFQTLNGAVDEVVLKFENGKARAKNVFYETLPVAVNGNGPTKILLNYFGNYVPNAWT 282
Query: 873 FETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
+ GC++CD L + + P V +G+FIEQPTP YP+
Sbjct: 283 QDNGCTLCDLDTIDLSTV--DVHPNVTIGVFIEQPTPFLPRFLDILLTLDYPK 333
>ref|XP_536856.2| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 precursor isoform 1 [Canis familiaris].
Length = 740
Score = 330 bits (846), Expect = 1e-90
Identities = 163/296 (55%), Positives = 212/296 (71%), Gaps = 3/296 (1%)
Frame = +3
Query: 150 GDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKV 323
GD + LLV+TVAT ETEG+RRF SA+FFNY ++ LGLGE+W + + GGG KV
Sbjct: 33 GDPVNPEKLLVITVATAETEGYRRFLWSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKV 92
Query: 324 RLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRL 500
R LKK +EK+AD E++VI+F DSYDV+ A P ELLKKF Q+ S+++FSAE +P+ L
Sbjct: 93 RWLKKEMEKYADREDMVIMFVDSYDVILAGSPAELLKKFVQSGSRLLFSAEGFCWPEWGL 152
Query: 501 EAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINI 680
+YP V GKRFL SGGFIG+AP + K+V +W+ +D D DQLFYT+++LDP RE++++
Sbjct: 153 AEQYPEVGTGKRFLNSGGFIGFAPTIHKVVRQWKYKDDDDDQLFYTRLYLDPGLREKLSL 212
Query: 681 TLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIP 860
LDH+ RIFQNL+GALDEVVLKF+ +VR RN+AYDTLPV++HGNGPTKL LNYLGNY+P
Sbjct: 213 NLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGPTKLHLNYLGNYVP 272
Query: 861 RFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYP 1028
WT + GC C R+L G + P VL+ +F+EQPTP YP
Sbjct: 273 NGWTPQGGCGFCGRDRRTLP--GGQPPPRVLLAVFVEQPTPFLPRFLQRLLLLDYP 326
>ref|XP_858413.1| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate
5-dioxygenase 3 precursor isoform 2 [Canis familiaris].
Length = 754
Score = 330 bits (846), Expect = 1e-90
Identities = 163/296 (55%), Positives = 212/296 (71%), Gaps = 3/296 (1%)
Frame = +3
Query: 150 GDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKV 323
GD + LLV+TVAT ETEG+RRF SA+FFNY ++ LGLGE+W + + GGG KV
Sbjct: 33 GDPVNPEKLLVITVATAETEGYRRFLWSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKV 92
Query: 324 RLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRL 500
R LKK +EK+AD E++VI+F DSYDV+ A P ELLKKF Q+ S+++FSAE +P+ L
Sbjct: 93 RWLKKEMEKYADREDMVIMFVDSYDVILAGSPAELLKKFVQSGSRLLFSAEGFCWPEWGL 152
Query: 501 EAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINI 680
+YP V GKRFL SGGFIG+AP + K+V +W+ +D D DQLFYT+++LDP RE++++
Sbjct: 153 AEQYPEVGTGKRFLNSGGFIGFAPTIHKVVRQWKYKDDDDDQLFYTRLYLDPGLREKLSL 212
Query: 681 TLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIP 860
LDH+ RIFQNL+GALDEVVLKF+ +VR RN+AYDTLPV++HGNGPTKL LNYLGNY+P
Sbjct: 213 NLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPVVVHGNGPTKLHLNYLGNYVP 272
Query: 861 RFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYP 1028
WT + GC C R+L G + P VL+ +F+EQPTP YP
Sbjct: 273 NGWTPQGGCGFCGRDRRTLP--GGQPPPRVLLAVFVEQPTPFLPRFLQRLLLLDYP 326
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,027,429
Number of extensions: 1183766
Number of successful extensions: 5388
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5360
Number of HSP's successfully gapped: 6
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013126
(1048 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127625.1| PREDICTED: procollagen-lysine,2-oxoglutarate... 571 e-163
Alignment gi|XP_003132514.2| PREDICTED: LOW QUALITY PROTEIN: procollagen-... 258 3e-69
>ref|XP_003127625.1| PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like
[Sus scrofa].
Length = 725
Score = 571 bits (1471), Expect = e-163
Identities = 285/298 (95%), Positives = 285/298 (95%)
Frame = +3
Query: 138 TETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASSGGGL 317
TETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASSGGGL
Sbjct: 16 TETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASSGGGL 75
Query: 318 KVRLLKKALEKHADENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR 497
KVRLLKKALEKHADENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR
Sbjct: 76 KVRLLKKALEKHADENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR 135
Query: 498 LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN 677
LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN
Sbjct: 136 LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN 195
Query: 678 ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 857
ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI
Sbjct: 196 ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 255
Query: 858 PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTP YPR
Sbjct: 256 PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPFLSLFFQRLLRLQYPR 313
>ref|XP_003132514.2| PREDICTED: LOW QUALITY PROTEIN: procollagen-lysine,2-oxoglutarate
5-dioxygenase 2 [Sus scrofa].
Length = 714
Score = 258 bits (660), Expect = 3e-69
Identities = 118/214 (55%), Positives = 159/214 (74%)
Frame = +3
Query: 390 YDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKYPAVSDGKRFLGSGGFIGYA 569
+DV+FA GP E+LKKF+++ +VVFSA+ +++PD+RL KYP V GKR+L SGGFIGYA
Sbjct: 70 FDVIFAGGPEEVLKKFQKSNHKVVFSADGILWPDKRLADKYPIVHIGKRYLNSGGFIGYA 129
Query: 570 PNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDHRCRIFQNLDGALDEVVLKF 749
P ++++V +W QD+D DQLFYTKI++DP KRE +NITLDH+C+IFQ L+GA+DEVVLKF
Sbjct: 130 PYINRIVQQWNLQDNDDDQLFYTKIYIDPLKREALNITLDHKCKIFQTLNGAVDEVVLKF 189
Query: 750 EMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFETGCSVCDEGLRSLKGIG 929
E G+ RA+N+ Y+TLPV I+GNGPTK+ LNY GNY+P WT + GC++CD L +
Sbjct: 190 ENGKARAKNVFYETLPVAINGNGPTKILLNYFGNYVPNAWTQDNGCTLCDVDTIDLSAV- 248
Query: 930 DEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
+ P V +G+FIEQPTP YP+
Sbjct: 249 -DVHPNVTIGVFIEQPTPFLPRFLDTLLTLDYPK 281
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,365,513
Number of extensions: 742092
Number of successful extensions: 3462
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3450
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013126
(1048 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035252.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 509 e-144
Alignment gi|NP_001136388.1| procollagen-lysine,2-oxoglutarate 5-dioxygen... 334 6e-92
Alignment gi|NP_036091.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 334 6e-92
Alignment gi|NP_036092.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 333 2e-91
>ref|NP_035252.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Mus
musculus].
Length = 728
Score = 509 bits (1310), Expect = e-144
Identities = 256/300 (85%), Positives = 272/300 (90%), Gaps = 3/300 (1%)
Frame = +3
Query: 141 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEK--EASSGGG 314
+ K DAK EDNLLVLTVATKETEGFRRFKRSAQFFNYKIQ+LGLGEDW+ A++GGG
Sbjct: 17 QAKDDAKLEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQSLGLGEDWSVDGGPAAAGGG 76
Query: 315 LKVRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPD 491
KVRLLKKALEKHAD E+LVILF DSYDVVFASGPRELLKKF+QAKSQVVFSAEE IYPD
Sbjct: 77 QKVRLLKKALEKHADKEDLVILFVDSYDVVFASGPRELLKKFQQAKSQVVFSAEEHIYPD 136
Query: 492 RRLEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRER 671
RRLEAKYP V DGKRFLGSGGFIGYAP+LSKLVAEWEGQDSDSDQLFYTKIFL+PEKRE+
Sbjct: 137 RRLEAKYPTVPDGKRFLGSGGFIGYAPSLSKLVAEWEGQDSDSDQLFYTKIFLNPEKREQ 196
Query: 672 INITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGN 851
INI+LDHRCRIFQNLDGALDEVVLKFEMG VRARNLAYDTLPV++HGNGPTKLQLNYLGN
Sbjct: 197 INISLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVVVHGNGPTKLQLNYLGN 256
Query: 852 YIPRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
YIPRFWTFETGC+VCDEGLRSLKGIGDEALPTVLVG+FIEQPTP YP+
Sbjct: 257 YIPRFWTFETGCTVCDEGLRSLKGIGDEALPTVLVGVFIEQPTPFLSLFFLRLLRLRYPQ 316
>ref|NP_001136388.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1 [Mus
musculus].
Length = 758
Score = 334 bits (857), Expect = 6e-92
Identities = 163/293 (55%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Frame = +3
Query: 162 PEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEA--SSGGGLKVRLLK 335
P D LLV+TVATKE +GF RF SA++FNY ++ LG G++W + S GGG KVRLLK
Sbjct: 35 PADKLLVITVATKENDGFHRFMNSAKYFNYTVKVLGQGQEWRGGDGMNSIGGGQKVRLLK 94
Query: 336 KALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKY 512
+A+E +A E+LVILFT+ +DVVFA GP E+LKKF++ ++VF+A+ L++PD+RL KY
Sbjct: 95 EAMEHYASQEDLVILFTECFDVVFAGGPEEVLKKFQKTNHKIVFAADGLLWPDKRLADKY 154
Query: 513 PAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDH 692
P V GKR+L SGGFIGYAP +S+LV +W QD+D DQLFYTK+++DP KRE NITLDH
Sbjct: 155 PVVHIGKRYLNSGGFIGYAPYISRLVQQWNLQDNDDDQLFYTKVYIDPLKREAFNITLDH 214
Query: 693 RCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWT 872
+C+IFQ L+GA DEVVLKFE G+ R +N Y+TLPV I+GNGPTK+ LNY GNY+P WT
Sbjct: 215 KCKIFQALNGATDEVVLKFENGKSRVKNTFYETLPVAINGNGPTKILLNYFGNYVPNSWT 274
Query: 873 FETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
E GC++CD L + + P V +G+FIEQPTP YP+
Sbjct: 275 QENGCALCDVDTIDLSTV--DVPPKVTLGVFIEQPTPFLPRFLNLLLTLDYPK 325
>ref|NP_036091.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 2 [Mus
musculus].
Length = 737
Score = 334 bits (857), Expect = 6e-92
Identities = 163/293 (55%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Frame = +3
Query: 162 PEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEA--SSGGGLKVRLLK 335
P D LLV+TVATKE +GF RF SA++FNY ++ LG G++W + S GGG KVRLLK
Sbjct: 35 PADKLLVITVATKENDGFHRFMNSAKYFNYTVKVLGQGQEWRGGDGMNSIGGGQKVRLLK 94
Query: 336 KALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKY 512
+A+E +A E+LVILFT+ +DVVFA GP E+LKKF++ ++VF+A+ L++PD+RL KY
Sbjct: 95 EAMEHYASQEDLVILFTECFDVVFAGGPEEVLKKFQKTNHKIVFAADGLLWPDKRLADKY 154
Query: 513 PAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDH 692
P V GKR+L SGGFIGYAP +S+LV +W QD+D DQLFYTK+++DP KRE NITLDH
Sbjct: 155 PVVHIGKRYLNSGGFIGYAPYISRLVQQWNLQDNDDDQLFYTKVYIDPLKREAFNITLDH 214
Query: 693 RCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWT 872
+C+IFQ L+GA DEVVLKFE G+ R +N Y+TLPV I+GNGPTK+ LNY GNY+P WT
Sbjct: 215 KCKIFQALNGATDEVVLKFENGKSRVKNTFYETLPVAINGNGPTKILLNYFGNYVPNSWT 274
Query: 873 FETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
E GC++CD L + + P V +G+FIEQPTP YP+
Sbjct: 275 QENGCALCDVDTIDLSTV--DVPPKVTLGVFIEQPTPFLPRFLNLLLTLDYPK 325
>ref|NP_036092.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 precursor [Mus
musculus].
Length = 741
Score = 333 bits (853), Expect = 2e-91
Identities = 160/290 (55%), Positives = 214/290 (73%), Gaps = 3/290 (1%)
Frame = +3
Query: 168 DNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKVRLLKKA 341
D LLV+TVAT ETEG+RRF +SA+FFNY ++ LGLG++W + + GGG KVR LKK
Sbjct: 40 DKLLVITVATAETEGYRRFLQSAEFFNYTVRTLGLGQEWRGGDVARTVGGGQKVRWLKKE 99
Query: 342 LEKHADE-NLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKYPA 518
+EK+AD+ +++I+F DSYDV+ AS P ELLKKF Q+ S ++FSAE +P+ L +YP
Sbjct: 100 MEKYADQKDMIIMFVDSYDVILASSPTELLKKFVQSGSHLLFSAESFCWPEWGLAEQYPE 159
Query: 519 VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDHRC 698
V GKRFL SGGFIG+AP + ++V +W +D D DQLFYT+++LDP RE++ ++LDH+
Sbjct: 160 VGMGKRFLNSGGFIGFAPTIHQIVRQWNYKDDDDDQLFYTQLYLDPGLREKLKLSLDHKS 219
Query: 699 RIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFE 878
RIFQNL+GALDEV+LKF+ +VR RN+AYDTLPV++HGNGPTKLQLNYLGNY+P WT +
Sbjct: 220 RIFQNLNGALDEVILKFDQNRVRIRNVAYDTLPVVVHGNGPTKLQLNYLGNYVPNGWTPQ 279
Query: 879 TGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYP 1028
GC C++ LR+L G + P VL+ +F+EQPTP YP
Sbjct: 280 GGCGFCNQTLRTLP--GGQPPPRVLLAVFVEQPTPFLPRFLQRLLLLDYP 327
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,476,181
Number of extensions: 926722
Number of successful extensions: 3911
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3887
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013126
(1048 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000293.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 533 e-152
Alignment gi|NP_891988.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 337 1e-92
Alignment gi|NP_000926.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 337 1e-92
Alignment gi|NP_001075.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase... 327 1e-89
>ref|NP_000293.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Homo
sapiens].
Length = 727
Score = 533 bits (1374), Expect = e-152
Identities = 268/299 (89%), Positives = 276/299 (92%), Gaps = 2/299 (0%)
Frame = +3
Query: 141 ETKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWN-EKEASSGGGL 317
E KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWN EK S+GGG
Sbjct: 17 EAKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNVEKGTSAGGGQ 76
Query: 318 KVRLLKKALEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDR 494
KVRLLKKALEKHAD E+LVILF DSYDV+FASGPRELLKKFRQA+SQVVFSAEELIYPDR
Sbjct: 77 KVRLLKKALEKHADKEDLVILFADSYDVLFASGPRELLKKFRQARSQVVFSAEELIYPDR 136
Query: 495 RLEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERI 674
RLE KYP VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRE+I
Sbjct: 137 RLETKYPVVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKREQI 196
Query: 675 NITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 854
NITLDHRCRIFQNLDGALDEVVLKFEMG VRARNLAYDTLPVLIHGNGPTKLQLNYLGNY
Sbjct: 197 NITLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNY 256
Query: 855 IPRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
IPRFWTFETGC+VCDEGLRSLKGIGDEALPTVLVG+FIEQPTP YP+
Sbjct: 257 IPRFWTFETGCTVCDEGLRSLKGIGDEALPTVLVGVFIEQPTPFVSLFFQRLLRLHYPQ 315
>ref|NP_891988.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1 precursor
[Homo sapiens].
Length = 758
Score = 337 bits (863), Expect = 1e-92
Identities = 159/298 (53%), Positives = 220/298 (73%), Gaps = 3/298 (1%)
Frame = +3
Query: 147 KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEA--SSGGGLK 320
K + P D LLV+TVATKE++GF RF +SA++FNY ++ LG GE+W + S GGG K
Sbjct: 30 KPSSIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINSIGGGQK 89
Query: 321 VRLLKKALEKHADEN-LVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR 497
VRL+K+ +E +AD++ LV++FT+ +DV+FA GP E+LKKF++A +VVF+A+ +++PD+R
Sbjct: 90 VRLMKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKR 149
Query: 498 LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN 677
L KYP V GKR+L SGGFIGYAP ++++V +W QD+D DQLFYTK+++DP KRE IN
Sbjct: 150 LADKYPVVHIGKRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYIDPLKREAIN 209
Query: 678 ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 857
ITLDH+C+IFQ L+GA+DEVVLKFE G+ RA+N Y+TLPV I+GNGPTK+ LNY GNY+
Sbjct: 210 ITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNTFYETLPVAINGNGPTKILLNYFGNYV 269
Query: 858 PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
P WT + GC++C+ L + + P V +G+FIEQPTP YP+
Sbjct: 270 PNSWTQDNGCTLCEFDTVDLSAV--DVHPNVSIGVFIEQPTPFLPRFLDILLTLDYPK 325
>ref|NP_000926.2| procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 2 precursor
[Homo sapiens].
Length = 737
Score = 337 bits (863), Expect = 1e-92
Identities = 159/298 (53%), Positives = 220/298 (73%), Gaps = 3/298 (1%)
Frame = +3
Query: 147 KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEA--SSGGGLK 320
K + P D LLV+TVATKE++GF RF +SA++FNY ++ LG GE+W + S GGG K
Sbjct: 30 KPSSIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINSIGGGQK 89
Query: 321 VRLLKKALEKHADEN-LVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRR 497
VRL+K+ +E +AD++ LV++FT+ +DV+FA GP E+LKKF++A +VVF+A+ +++PD+R
Sbjct: 90 VRLMKEVMEHYADQDDLVVMFTECFDVIFAGGPEEVLKKFQKANHKVVFAADGILWPDKR 149
Query: 498 LEAKYPAVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERIN 677
L KYP V GKR+L SGGFIGYAP ++++V +W QD+D DQLFYTK+++DP KRE IN
Sbjct: 150 LADKYPVVHIGKRYLNSGGFIGYAPYVNRIVQQWNLQDNDDDQLFYTKVYIDPLKREAIN 209
Query: 678 ITLDHRCRIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYI 857
ITLDH+C+IFQ L+GA+DEVVLKFE G+ RA+N Y+TLPV I+GNGPTK+ LNY GNY+
Sbjct: 210 ITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNTFYETLPVAINGNGPTKILLNYFGNYV 269
Query: 858 PRFWTFETGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYPR 1031
P WT + GC++C+ L + + P V +G+FIEQPTP YP+
Sbjct: 270 PNSWTQDNGCTLCEFDTVDLSAV--DVHPNVSIGVFIEQPTPFLPRFLDILLTLDYPK 325
>ref|NP_001075.1| procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 precursor [Homo
sapiens].
Length = 738
Score = 327 bits (838), Expect = 1e-89
Identities = 158/290 (54%), Positives = 211/290 (72%), Gaps = 3/290 (1%)
Frame = +3
Query: 168 DNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNEKEASS--GGGLKVRLLKKA 341
+ LLV+TVAT ETEG+ RF RSA+FFNY ++ LGLGE+W + + GGG KVR LKK
Sbjct: 37 EKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKE 96
Query: 342 LEKHAD-ENLVILFTDSYDVVFASGPRELLKKFRQAKSQVVFSAEELIYPDRRLEAKYPA 518
+EK+AD E+++I+F DSYDV+ A P ELLKKF Q+ S+++FSAE +P+ L +YP
Sbjct: 97 MEKYADREDMIIMFVDSYDVILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPE 156
Query: 519 VSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKRERINITLDHRC 698
V GKRFL SGGFIG+A + ++V +W+ +D D DQLFYT+++LDP RE++++ LDH+
Sbjct: 157 VGTGKRFLNSGGFIGFATTIHQIVRQWKYKDDDDDQLFYTRLYLDPGLREKLSLNLDHKS 216
Query: 699 RIFQNLDGALDEVVLKFEMGQVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFE 878
RIFQNL+GALDEVVLKF+ +VR RN+AYDTLP+++HGNGPTKLQLNYLGNY+P WT E
Sbjct: 217 RIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLGNYVPNGWTPE 276
Query: 879 TGCSVCDEGLRSLKGIGDEALPTVLVGLFIEQPTPXXXXXXXXXXXXXYP 1028
GC C++ R+L G + P V + +F+EQPTP YP
Sbjct: 277 GGCGFCNQDRRTLP--GGQPPPRVFLAVFVEQPTPFLPRFLQRLLLLDYP 324
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,002,041
Number of extensions: 1140111
Number of successful extensions: 5080
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5053
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013126
(1048 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 335 3e-89
>Sscrofa_Chr06
|| Length = 157765593
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 385 acagctatgacgtggtgtttgcctccgggccccgagagctgctgaagaagttccggcagg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65907705 acagctatgacgtggtgtttgcctccgggccccgagagctgctgaagaagttccggcagg 65907764
Query: 445 ccaagagccaggtggtcttctcggcagaggagctcatctacccggaccgcaggctggagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65907765 ccaagagccaggtggtcttctcggcagaggagctcatctacccggaccgcaggctggagg 65907824
Query: 505 ccaagtacccggccgtctccgacggcaagaggttcctgggctctggagg 553
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65907825 ccaagtacccggccgtctccgacggcaagaggttcctgggctctggagg 65907873
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 1 gtgcgtggcagcgggatcaccggccccgtcgcgaagtttccagcttttttgcgagagccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65898242 gtgcgtggcagcgggatcaccggccccgtcgcgaagtttccagcttttttgcgagagccg 65898301
Query: 61 ctggatcagccggacgtccccaggccctggccatgcggctcctgctacttctggccccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65898302 ctggatcagccggacgtccccaggccctggccatgcggctcctgctacttctggccccac 65898361
Query: 121 tgggctggctgcttctgaccgaaacgaagggtgacgccaaaccggagg 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65898362 tgggctggctgcttctgaccgaaacgaagggtgacgccaaaccggagg 65898409
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 258 caggcgctgggactgggggaggactggaatgagaaggaggcatcgtcgggtggagggctg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65907134 caggcgctgggactgggggaggactggaatgagaaggaggcatcgtcgggtggagggctg 65907193
Query: 318 aaggttcggctgctgaagaaagccctggaaaagcatgcagacgagaacctggtcattctc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65907194 aaggttcggctgctgaagaaagccctggaaaagcatgcagacgagaacctggtcattctc 65907253
Query: 378 ttcacagacag 388
|||||||||||
Sbjct: 65907254 ttcacagacag 65907264
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 551 aggcttcattggttatgcccccaacctcagcaaactggtggctgagtgggagggtcagga 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65909519 aggcttcattggttatgcccccaacctcagcaaactggtggctgagtgggagggtcagga 65909578
Query: 611 cagcgacagcgaccaactcttttataccaagatcttcttggacccagagaagaggg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65909579 cagcgacagcgaccaactcttttataccaagatcttcttggacccagagaagaggg 65909634
Score = 224 bits (113), Expect = 8e-56
Identities = 120/121 (99%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 929 ggatgaagctctgcccacagtcctggtcggcctgttcatcgaacagcccacgccgttcct 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65915690 ggatgaagctctgcccacagtcctggtcggcctgttcatcgaacagcccacgccgttcct 65915749
Query: 989 gtccctgttcttccagcggctcctgcgcctccaatacccccgg-aacggatgcggctttt 1047
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 65915750 gtccctgttcttccagcggctcctgcgcctccaatacccccggaaacggatgcggctttt 65915809
Query: 1048 c 1048
|
Sbjct: 65915810 c 65915810
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 826 agctgcagctgaactacctgggcaactacatcccgcgcttctggaccttcgagacggggt 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65915024 agctgcagctgaactacctgggcaactacatcccgcgcttctggaccttcgagacggggt 65915083
Query: 886 gctctgtgtgtgatgagggcctgcgcagcctcaagggcattgggg 930
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65915084 gctctgtgtgtgatgagggcctgcgcagcctcaagggcattgggg 65915128
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 729 gatgaggtcgtgctcaagttcgagatgggccaagtgagagcgaggaacctggcctacgac 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65913844 gatgaggtcgtgctcaagttcgagatgggccaagtgagagcgaggaacctggcctacgac 65913903
Query: 789 accctcccggtcctgattcacggcaatgggcccaccaag 827
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65913904 accctcccggtcctgattcacggcaatgggcccaccaag 65913942
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 168 gacaacctcttggtgctcacggtggccacgaaggagaccgaggggttccgacgcttcaag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65905595 gacaacctcttggtgctcacggtggccacgaaggagaccgaggggttccgacgcttcaag 65905654
Query: 228 cgctcagcccagttcttcaactacaagatccagg 261
||||||||||||||||||||||||||||||||||
Sbjct: 65905655 cgctcagcccagttcttcaactacaagatccagg 65905688
Score = 131 bits (66), Expect = 8e-28
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 665 ggagcggatcaatatcaccttggaccaccgctgccgtatcttccagaatctggatggagc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65911701 ggagcggatcaatatcaccttggaccaccgctgccgtatcttccagaatctggatggagc 65911760
Query: 725 cttggatgag 734
||||| ||||
Sbjct: 65911761 cttgggtgag 65911770
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,735,514
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 9
Length of query: 1048
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1027
Effective length of database: 2,808,413,156
Effective search space: 2884240311212
Effective search space used: 2884240311212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)