Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013132
(1131 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533520.2| PREDICTED: similar to phosphoserine aminotransf... 579 e-165
>ref|XP_533520.2| PREDICTED: similar to phosphoserine aminotransferase isoform 1 [Canis
familiaris].
Length = 370
Score = 579 bits (1493), Expect = e-165
Identities = 288/334 (86%), Positives = 303/334 (90%)
Frame = +2
Query: 83 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 262
M + QVVNFG GPAKLPRSVLLEIQKELLDYKG+GISVLEMSHRSSDF+KIINN ENLV
Sbjct: 1 MSAPRQVVNFGPGPAKLPRSVLLEIQKELLDYKGIGISVLEMSHRSSDFAKIINNAENLV 60
Query: 263 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGT 442
RELL++PDNYKVIFVQGGG GQFSAVPLNLI KAGRCADYVVTGSWS FGT
Sbjct: 61 RELLAVPDNYKVIFVQGGGSGQFSAVPLNLISRKAGRCADYVVTGSWSAKAAEEAKKFGT 120
Query: 443 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 622
VN+VHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLV DMSSN
Sbjct: 121 VNVVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
Query: 623 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 802
FLSKPVDVSKFGVIFAGAQKNVGSAGVT+VI+RDDLLGFALRECPS+L+YKVQAGN+SLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTIVIIRDDLLGFALRECPSVLEYKVQAGNSSLY 240
Query: 803 NTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQHRSK 982
NTPPCFS+YVMGLVLEWIKNNGGAAAMEKLS IKSQMIYDIIDNSQGFYVCPVE ++RSK
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQMIYDIIDNSQGFYVCPVETKNRSK 300
Query: 983 MNIPFRIWHTKGDDALEKGFLIKLLN*K*SPLKG 1084
MNIPFRI + KGDDALEK FL K L LKG
Sbjct: 301 MNIPFRIGNAKGDDALEKRFLDKALELNMISLKG 334
Score = 57.8 bits (138), Expect = 2e-08
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = +1
Query: 1033 ERFLDKALELKMISPEGHRSLGGIRASLYNAVT 1131
+RFLDKALEL MIS +GHRS+GGIRASLYNAVT
Sbjct: 318 KRFLDKALELNMISLKGHRSVGGIRASLYNAVT 350
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,870,332
Number of extensions: 1337116
Number of successful extensions: 3577
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3577
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013132
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013132
(1131 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095620.1| phosphoserine aminotransferase [Bos taurus]. 597 e-171
>ref|NP_001095620.1| phosphoserine aminotransferase [Bos taurus].
Length = 370
Score = 597 bits (1538), Expect = e-171
Identities = 297/334 (88%), Positives = 308/334 (92%)
Frame = +2
Query: 83 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 262
MDSLM VVNFG GPAKLPRSVLLE+QKELLDYKG+GISVLEMSHRSSDFSKIIN TE LV
Sbjct: 1 MDSLMPVVNFGPGPAKLPRSVLLEMQKELLDYKGIGISVLEMSHRSSDFSKIINKTETLV 60
Query: 263 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGT 442
RELL+IPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWS FGT
Sbjct: 61 RELLAIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSAKAAEEAKKFGT 120
Query: 443 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 622
VNIVHPKLGSYTKIPDPSTW L+PDASYVYYCANETVHGVEFDFIPDVKGAVLV DMSSN
Sbjct: 121 VNIVHPKLGSYTKIPDPSTWTLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
Query: 623 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 802
FLS+PVDVSKFGVIFAGAQKNVGSAGVTVVI+RDDLLGFAL+ECPS+LDYKVQAGNNSLY
Sbjct: 181 FLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIIRDDLLGFALKECPSVLDYKVQAGNNSLY 240
Query: 803 NTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQHRSK 982
NTPPCFS+YVMGLVLEWIKNNGGAAAMEKLS IKSQMIYDIIDNSQGFYVCPVEPQ+RSK
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQMIYDIIDNSQGFYVCPVEPQNRSK 300
Query: 983 MNIPFRIWHTKGDDALEKGFLIKLLN*K*SPLKG 1084
MNIPFRI +TKGDDALEK FL K L LKG
Sbjct: 301 MNIPFRIGNTKGDDALEKRFLDKALELNMISLKG 334
Score = 56.2 bits (134), Expect = 5e-08
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +1
Query: 1033 ERFLDKALELKMISPEGHRSLGGIRASLYNAVT 1131
+RFLDKALEL MIS +GHRS+GGIR SLYNAVT
Sbjct: 318 KRFLDKALELNMISLKGHRSVGGIRVSLYNAVT 350
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,020,997
Number of extensions: 1310597
Number of successful extensions: 3588
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3586
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013132
(1131 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928114.2| PREDICTED: phosphoserine aminotransferase is... 475 e-134
Alignment gi|XP_003353599.1| PREDICTED: phosphoserine aminotransferase-li... 60 3e-09
>ref|XP_001928114.2| PREDICTED: phosphoserine aminotransferase isoform 2 [Sus scrofa].
Length = 247
Score = 475 bits (1223), Expect = e-134
Identities = 237/246 (96%), Positives = 237/246 (96%)
Frame = +2
Query: 83 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 262
MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV
Sbjct: 1 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 60
Query: 263 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGT 442
RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWS FGT
Sbjct: 61 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSAKAAEEAKKFGT 120
Query: 443 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 622
VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN
Sbjct: 121 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 180
Query: 623 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 802
FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 240
Query: 803 NTPPCF 820
NTPPCF
Sbjct: 241 NTPPCF 246
>ref|XP_003353599.1| PREDICTED: phosphoserine aminotransferase-like [Sus scrofa].
Length = 70
Score = 59.7 bits (143), Expect = 3e-09
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +1
Query: 1033 ERFLDKALELKMISPEGHRSLGGIRASLYNAVT 1131
+RFLDKALELKMIS +GHRS+GGIRASLYNAVT
Sbjct: 18 KRFLDKALELKMISLKGHRSVGGIRASLYNAVT 50
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,231,853
Number of extensions: 837550
Number of successful extensions: 2357
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2354
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013132
(1131 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803155.1| phosphoserine aminotransferase isoform 1 [Mus m... 567 e-162
Alignment gi|XP_001478041.2| PREDICTED: phosphoserine aminotransferase-li... 564 e-161
Alignment gi|NP_001192268.1| phosphoserine aminotransferase isoform 2 [Mu... 539 e-153
>ref|NP_803155.1| phosphoserine aminotransferase isoform 1 [Mus musculus].
Length = 370
Score = 567 bits (1462), Expect = e-162
Identities = 280/334 (83%), Positives = 304/334 (91%)
Frame = +2
Query: 83 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 262
M++ QVVNFG GPAKLP SVLLEIQK+LLDY+G+GISVLEMSHRSSDF+KII NTENLV
Sbjct: 1 MEATKQVVNFGPGPAKLPHSVLLEIQKQLLDYRGLGISVLEMSHRSSDFAKIIGNTENLV 60
Query: 263 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGT 442
RELL++P+NYKVIFVQGGG GQFSAVPLNLIGLKAGR ADYVVTG+WS FGT
Sbjct: 61 RELLAVPNNYKVIFVQGGGSGQFSAVPLNLIGLKAGRSADYVVTGAWSAKAAEEAKKFGT 120
Query: 443 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 622
VNIVHPKLGSYTKIPDPSTWNL+PDASYVY+CANETVHGVEFDF+PDVKGAVLV DMSSN
Sbjct: 121 VNIVHPKLGSYTKIPDPSTWNLNPDASYVYFCANETVHGVEFDFVPDVKGAVLVCDMSSN 180
Query: 623 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 802
FLS+PVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGF+LRECPS+LDYKVQAGNNSLY
Sbjct: 181 FLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFSLRECPSVLDYKVQAGNNSLY 240
Query: 803 NTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQHRSK 982
NTPPCFS+YVMG+VLEWIKNNGGAAAMEKLS IKSQMIY+IIDNSQGFYVCPVE Q+RS+
Sbjct: 241 NTPPCFSIYVMGMVLEWIKNNGGAAAMEKLSSIKSQMIYEIIDNSQGFYVCPVERQNRSR 300
Query: 983 MNIPFRIWHTKGDDALEKGFLIKLLN*K*SPLKG 1084
MNIPFRI + KGD+ALEK FL K + LKG
Sbjct: 301 MNIPFRIGNAKGDEALEKRFLDKAVELNMISLKG 334
Score = 56.6 bits (135), Expect = 3e-08
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +1
Query: 1033 ERFLDKALELKMISPEGHRSLGGIRASLYNAVT 1131
+RFLDKA+EL MIS +GHRS+GGIRASLYNAVT
Sbjct: 318 KRFLDKAVELNMISLKGHRSVGGIRASLYNAVT 350
>ref|XP_001478041.2| PREDICTED: phosphoserine aminotransferase-like isoform 2 [Mus
musculus].
Length = 370
Score = 564 bits (1453), Expect = e-161
Identities = 279/334 (83%), Positives = 303/334 (90%)
Frame = +2
Query: 83 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 262
M++ QVVNFG GPAKLP SVLLEIQK+LLDY+G+GISVLEMSHRSSDF+KII NTENLV
Sbjct: 1 MEATKQVVNFGPGPAKLPHSVLLEIQKQLLDYRGLGISVLEMSHRSSDFAKIIGNTENLV 60
Query: 263 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGT 442
RELL++P+NYKVIFVQGGG GQFSAVPLNLIGLKAGR ADYVVTG+WS FGT
Sbjct: 61 RELLAVPNNYKVIFVQGGGSGQFSAVPLNLIGLKAGRSADYVVTGAWSAKAAEEAKKFGT 120
Query: 443 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 622
VNIVHPKLGSYTKIPDPSTWNL+ DASYVY+CANETVHGVEFDF+PDVKGAVLV DMSSN
Sbjct: 121 VNIVHPKLGSYTKIPDPSTWNLNRDASYVYFCANETVHGVEFDFVPDVKGAVLVCDMSSN 180
Query: 623 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 802
FLS+PVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGF+LRECPS+LDYKVQAGNNSLY
Sbjct: 181 FLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFSLRECPSVLDYKVQAGNNSLY 240
Query: 803 NTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQHRSK 982
NTPPCFS+YVMG+VLEWIKNNGGAAAMEKLS IKSQMIY+IIDNSQGFYVCPVE Q+RS+
Sbjct: 241 NTPPCFSIYVMGMVLEWIKNNGGAAAMEKLSSIKSQMIYEIIDNSQGFYVCPVERQNRSR 300
Query: 983 MNIPFRIWHTKGDDALEKGFLIKLLN*K*SPLKG 1084
MNIPFRI + KGD+ALEK FL K + LKG
Sbjct: 301 MNIPFRIGNAKGDEALEKRFLDKAVELNMISLKG 334
Score = 56.6 bits (135), Expect = 3e-08
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +1
Query: 1033 ERFLDKALELKMISPEGHRSLGGIRASLYNAVT 1131
+RFLDKA+EL MIS +GHRS+GGIRASLYNAVT
Sbjct: 318 KRFLDKAVELNMISLKGHRSVGGIRASLYNAVT 350
>ref|NP_001192268.1| phosphoserine aminotransferase isoform 2 [Mus musculus].
Length = 367
Score = 539 bits (1389), Expect = e-153
Identities = 266/314 (84%), Positives = 288/314 (91%)
Frame = +2
Query: 143 VLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLVRELLSIPDNYKVIFVQGGGC 322
VLLEIQK+LLDY+G+GISVLEMSHRSSDF+KII NTENLVRELL++P+NYKVIFVQGGG
Sbjct: 18 VLLEIQKQLLDYRGLGISVLEMSHRSSDFAKIIGNTENLVRELLAVPNNYKVIFVQGGGS 77
Query: 323 GQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGTVNIVHPKLGSYTKIPDPSTW 502
GQFSAVPLNLIGLKAGR ADYVVTG+WS FGTVNIVHPKLGSYTKIPDPSTW
Sbjct: 78 GQFSAVPLNLIGLKAGRSADYVVTGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTW 137
Query: 503 NLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSNFLSKPVDVSKFGVIFAGAQK 682
NL+PDASYVY+CANETVHGVEFDF+PDVKGAVLV DMSSNFLS+PVDVSKFGVIFAGAQK
Sbjct: 138 NLNPDASYVYFCANETVHGVEFDFVPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQK 197
Query: 683 NVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLYNTPPCFSVYVMGLVLEWIKN 862
NVGSAGVTVVIVRDDLLGF+LRECPS+LDYKVQAGNNSLYNTPPCFS+YVMG+VLEWIKN
Sbjct: 198 NVGSAGVTVVIVRDDLLGFSLRECPSVLDYKVQAGNNSLYNTPPCFSIYVMGMVLEWIKN 257
Query: 863 NGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQHRSKMNIPFRIWHTKGDDALEKGF 1042
NGGAAAMEKLS IKSQMIY+IIDNSQGFYVCPVE Q+RS+MNIPFRI + KGD+ALEK F
Sbjct: 258 NGGAAAMEKLSSIKSQMIYEIIDNSQGFYVCPVERQNRSRMNIPFRIGNAKGDEALEKRF 317
Query: 1043 LIKLLN*K*SPLKG 1084
L K + LKG
Sbjct: 318 LDKAVELNMISLKG 331
Score = 56.6 bits (135), Expect = 3e-08
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +1
Query: 1033 ERFLDKALELKMISPEGHRSLGGIRASLYNAVT 1131
+RFLDKA+EL MIS +GHRS+GGIRASLYNAVT
Sbjct: 315 KRFLDKAVELNMISLKGHRSVGGIRASLYNAVT 347
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,026,865
Number of extensions: 1130522
Number of successful extensions: 3054
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3053
Number of HSP's successfully gapped: 6
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013132
(1131 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_478059.1| phosphoserine aminotransferase isoform 1 [Homo ... 588 e-168
Alignment gi|NP_066977.1| phosphoserine aminotransferase isoform 2 [Homo ... 532 e-151
>ref|NP_478059.1| phosphoserine aminotransferase isoform 1 [Homo sapiens].
Length = 370
Score = 588 bits (1517), Expect = e-168
Identities = 292/334 (87%), Positives = 307/334 (91%)
Frame = +2
Query: 83 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 262
MD+ QVVNFG GPAKLP SVLLEIQKELLDYKGVGISVLEMSHRSSDF+KIINNTENLV
Sbjct: 1 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60
Query: 263 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGT 442
RELL++PDNYKVIF+QGGGCGQFSAVPLNLIGLKAGRCADYVVTG+WS FGT
Sbjct: 61 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120
Query: 443 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 622
+NIVHPKLGSYTKIPDPSTWNL+PDASYVYYCANETVHGVEFDFIPDVKGAVLV DMSSN
Sbjct: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
Query: 623 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 802
FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPS+L+YKVQAGN+SLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240
Query: 803 NTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYVCPVEPQHRSK 982
NTPPCFS+YVMGLVLEWIKNNGGAAAMEKLS IKSQ IY+IIDNSQGFYVCPVEPQ+RSK
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK 300
Query: 983 MNIPFRIWHTKGDDALEKGFLIKLLN*K*SPLKG 1084
MNIPFRI + KGDDALEK FL K L LKG
Sbjct: 301 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKG 334
Score = 57.0 bits (136), Expect = 3e-08
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = +1
Query: 1033 ERFLDKALELKMISPEGHRSLGGIRASLYNAVT 1131
+RFLDKALEL M+S +GHRS+GGIRASLYNAVT
Sbjct: 318 KRFLDKALELNMLSLKGHRSVGGIRASLYNAVT 350
>ref|NP_066977.1| phosphoserine aminotransferase isoform 2 [Homo sapiens].
Length = 324
Score = 532 bits (1371), Expect = e-151
Identities = 261/290 (90%), Positives = 274/290 (94%)
Frame = +2
Query: 83 MDSLMQVVNFGAGPAKLPRSVLLEIQKELLDYKGVGISVLEMSHRSSDFSKIINNTENLV 262
MD+ QVVNFG GPAKLP SVLLEIQKELLDYKGVGISVLEMSHRSSDF+KIINNTENLV
Sbjct: 1 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV 60
Query: 263 RELLSIPDNYKVIFVQGGGCGQFSAVPLNLIGLKAGRCADYVVTGSWSXXXXXXXXXFGT 442
RELL++PDNYKVIF+QGGGCGQFSAVPLNLIGLKAGRCADYVVTG+WS FGT
Sbjct: 61 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT 120
Query: 443 VNIVHPKLGSYTKIPDPSTWNLSPDASYVYYCANETVHGVEFDFIPDVKGAVLVSDMSSN 622
+NIVHPKLGSYTKIPDPSTWNL+PDASYVYYCANETVHGVEFDFIPDVKGAVLV DMSSN
Sbjct: 121 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN 180
Query: 623 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSILDYKVQAGNNSLY 802
FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPS+L+YKVQAGN+SLY
Sbjct: 181 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY 240
Query: 803 NTPPCFSVYVMGLVLEWIKNNGGAAAMEKLSCIKSQMIYDIIDNSQGFYV 952
NTPPCFS+YVMGLVLEWIKNNGGAAAMEKLS IKSQ IY+IIDNSQGFYV
Sbjct: 241 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,184,973
Number of extensions: 1329043
Number of successful extensions: 3563
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3562
Number of HSP's successfully gapped: 3
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013132
(1131 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 408 e-111
>Sscrofa_Chr01
|| Length = 315321322
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 274 atccattccagacaactacaaggtgatttttgtgcaaggaggtgggtgtggccagttcag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257817272 atccattccagacaactacaaggtgatttttgtgcaaggaggtgggtgtggccagttcag 257817331
Query: 334 tgctgtccccttaaacctgattggcctgaaagcaggaaggtgtgctgactatgtggtgac 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257817332 tgctgtccccttaaacctgattggcctgaaagcaggaaggtgtgctgactatgtggtgac 257817391
Query: 394 aggatcctggtcagctaaggctgcagaagaagccaagaaatttgggactgtgaatattgt 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257817392 aggatcctggtcagctaaggctgcagaagaagccaagaaatttgggactgtgaatattgt 257817451
Query: 454 ccaccctaaacttgggagttacacaa 479
||||||||||||||||||||||||||
Sbjct: 257817452 ccaccctaaacttgggagttacacaa 257817477
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 480 aaattccagatccgagcacctggaacctcagcccagacgcttcctacgtatattactgtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257818289 aaattccagatccgagcacctggaacctcagcccagacgcttcctacgtatattactgtg 257818348
Query: 540 ctaatgagaccgtgcatggagtggagtttgactttatcccagatgtcaaaggagcagtgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257818349 ctaatgagaccgtgcatggagtggagtttgactttatcccagatgtcaaaggagcagtgc 257818408
Query: 600 tggtctctgacatgtcctcaaacttcctgtccaagccagtggatgtgtccaag 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257818409 tggtctctgacatgtcctcaaacttcctgtccaagccagtggatgtgtccaag 257818461
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 2 aggagctggctgcaagacttgggctgcccacgcgatcggtcctctgcgacagactctccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257809929 aggagctggctgcaagacttgggctgcccacgcgatcggtcctctgcgacagactctccg 257809988
Query: 62 taccgattgccgcaccgcaccatggactccctgatgcaggtggtcaatttcggggccggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257809989 taccgattgccgcaccgcaccatggactccctgatgcaggtggtcaatttcggggccggg 257810048
Query: 122 ccagccaagctgccgcgctcggta 145
||||||||||||||||||||||||
Sbjct: 257810049 ccagccaagctgccgcgctcggta 257810072
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 821 agcgtctatgtcatgggcttggtcctggagtggattaagaacaacggcggtgctgcagcc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257823365 agcgtctatgtcatgggcttggtcctggagtggattaagaacaacggcggtgctgcagcc 257823424
Query: 881 atggagaagcttagctgcatcaaatcacaaatgatttatgatattatcgataattctcaa 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257823425 atggagaagcttagctgcatcaaatcacaaatgatttatgatattatcgataattctcaa 257823484
Query: 941 ggattctatgt 951
|||||||||||
Sbjct: 257823485 ggattctatgt 257823495
Score = 206 bits (104), Expect = 2e-50
Identities = 132/140 (94%), Gaps = 1/140 (0%)
Strand = Plus / Plus
Query: 952 atgtccagtggagccccagcatagaagcaaaatgaatattccatttcgcatttggcacac 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 257833580 atgtccagtggagccccagcatagaagcaaaatgaatattccatttcgcattggcaacac 257833639
Query: 1012 caaaggagatgatgctctagag-aaaggtttcttgataaagctcttgaactgaaaatgat 1070
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 257833640 caaaggagatgatgctctagagaaaaggtttcttgataaagctcttgagctgaaaatgat 257833699
Query: 1071 ctcccctgaagggcacaggt 1090
||||| ||||||||||||
Sbjct: 257833700 ctccctgaaagggcacaggt 257833719
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 203 gaaatgagccacaggtcatcagatttttctaaaattattaacaacacagagaatcttgtg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257814565 gaaatgagccacaggtcatcagatttttctaaaattattaacaacacagagaatcttgtg 257814624
Query: 263 cgggaattgct 273
|||||||||||
Sbjct: 257814625 cgggaattgct 257814635
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 142 ggtattgttggagatacaaaaagaattattagactacaaaggagttgggattagtgttct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257813574 ggtattgttggagatacaaaaagaattattagactacaaaggagttgggattagtgttct 257813633
Query: 202 tg 203
||
Sbjct: 257813634 tg 257813635
Score = 81.8 bits (41), Expect = 8e-13
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 1087 aggtccctgggaggcatccgggcatctctctataatgctgtgacc 1131
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257834625 aggtccgtgggaggcatccgggcatctctctataatgctgtgacc 257834669
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,610,172
Number of extensions: 220
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 8
Length of query: 1131
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1110
Effective length of database: 2,808,413,156
Effective search space: 3117338603160
Effective search space used: 3117338603160
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)