Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013134
(1051 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033276.1| interleukin enhancer binding factor 2 [Bos t... 528 e-153
Alignment gi|NP_001193424.1| interleukin enhancer-binding factor 3 [Bos t... 86 7e-17
Alignment gi|XP_002696447.1| PREDICTED: Zinc finger RNA binding protein-l... 78 1e-14
Alignment gi|XP_580670.3| PREDICTED: zinc finger RNA binding protein isof... 78 1e-14
Alignment gi|NP_001069207.1| spermatid perinuclear RNA-binding protein [B... 77 2e-14
Alignment gi|XP_002688981.1| PREDICTED: KIAA1086 protein-like [Bos taurus]. 76 4e-14
Alignment gi|XP_875807.3| PREDICTED: zinc finger RNA binding protein 2 [B... 76 4e-14
>ref|NP_001033276.1| interleukin enhancer binding factor 2 [Bos taurus].
Length = 390
Score = 528 bits (1359), Expect(2) = e-153
Identities = 268/269 (99%), Positives = 269/269 (100%)
Frame = +2
Query: 188 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 367
VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID
Sbjct: 27 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 86
Query: 368 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 547
NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL
Sbjct: 87 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 146
Query: 548 RAQDPAEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 727
RAQDP+EVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR
Sbjct: 147 RAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 206
Query: 728 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV
Sbjct: 207 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 266
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCESGN 994
AYRRCLQILAAGLFLPGSVGITDPCESGN
Sbjct: 267 AYRRCLQILAAGLFLPGSVGITDPCESGN 295
Score = 35.0 bits (79), Expect(2) = e-153
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 997 RVHTFMTLEQQDMVC*TA 1050
RVHT MTLEQQDMVC TA
Sbjct: 297 RVHTVMTLEQQDMVCYTA 314
>ref|NP_001193424.1| interleukin enhancer-binding factor 3 [Bos taurus].
Length = 899
Score = 85.5 bits (210), Expect = 7e-17
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q LT +T++
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LTAVTDD 142
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 143 K-YEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|XP_002696447.1| PREDICTED: Zinc finger RNA binding protein-like [Bos taurus].
Length = 1171
Score = 77.8 bits (190), Expect = 1e-14
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEV-LTM 580
++ V +VG KG + G +LV++ P+ ++ + + + L P + +
Sbjct: 882 LKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPEKYDIKC 941
Query: 581 LTNETGFEISSS-DATVKILITTVPPNLRK-------------LDPELHLDIKVLQSALA 718
+E ++S + +++ IT P +R+ DP LD + ALA
Sbjct: 942 AVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALA 1001
Query: 719 AIRHARWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQP 892
A+RHA+WF+ A+ QS V ++IR+L+DL R P + W ++LL A+ + P
Sbjct: 1002 ALRHAKWFQARANGLQSCV-IIIRILRDLCQRVPTWSDFPSWAMELLVEKAISS--ASSP 1058
Query: 893 LALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+ A RR + +++G+ L GS G+ DPCE
Sbjct: 1059 QSPGDALRRVFECISSGIILKGSPGLLDPCE 1089
>ref|XP_580670.3| PREDICTED: zinc finger RNA binding protein isoform 1 [Bos taurus].
Length = 1053
Score = 77.8 bits (190), Expect = 1e-14
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEV-LTM 580
++ V +VG KG + G +LV++ P+ ++ + + + L P + +
Sbjct: 764 LKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPEKYDIKC 823
Query: 581 LTNETGFEISSS-DATVKILITTVPPNLRK-------------LDPELHLDIKVLQSALA 718
+E ++S + +++ IT P +R+ DP LD + ALA
Sbjct: 824 AVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALA 883
Query: 719 AIRHARWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQP 892
A+RHA+WF+ A+ QS V ++IR+L+DL R P + W ++LL A+ + P
Sbjct: 884 ALRHAKWFQARANGLQSCV-IIIRILRDLCQRVPTWSDFPSWAMELLVEKAISS--ASSP 940
Query: 893 LALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+ A RR + +++G+ L GS G+ DPCE
Sbjct: 941 QSPGDALRRVFECISSGIILKGSPGLLDPCE 971
>ref|NP_001069207.1| spermatid perinuclear RNA-binding protein [Bos taurus].
Length = 672
Score = 77.4 bits (189), Expect = 2e-14
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 16/207 (7%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAAL-GNKVVESLRAQDPAEVLTMLTN 589
V ++G KG + +LV++ K PT + + N ++ + + + +
Sbjct: 85 VMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCVD 144
Query: 590 ETGFEISSSDA---TVKILITT--VPPNLRKLD---------PELHLDIKVLQSALAAIR 727
E I ++ T+K+++T+ + L K D P+L LD + +ALA++R
Sbjct: 145 EASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGEKVAMKDPPDL-LDRQKCLNALASLR 203
Query: 728 HARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALN 904
HA+WF+ A+ + +++R+L+DL R P + PL W L+L+ ++ +PL
Sbjct: 204 HAKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAG 261
Query: 905 VAYRRCLQILAAGLFLPGSVGITDPCE 985
A RR ++ LA+G+ LPG G+ DPCE
Sbjct: 262 EALRRVMECLASGILLPGGPGLHDPCE 288
>ref|XP_002688981.1| PREDICTED: KIAA1086 protein-like [Bos taurus].
Length = 1009
Score = 76.3 bits (186), Expect = 4e-14
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTML 583
++ V +VG KG + G L+++ PT AL +V E L Q P +
Sbjct: 722 LKGVMRVGLLAKGLLLRGDRAVQLILLCSQKPT----RALQRRVAEQLPLQLP------V 771
Query: 584 TNETGFEISSS-----------DATVKILITTVPPNLRK------------LDPELHLDI 694
+ +E+SS + +++ ++ P +R+ DP L
Sbjct: 772 VTDDKYEVSSDPDASIVISSCEEPRIQVAVSITSPLMREDPSADQGTEVPLPDPGDVLSP 831
Query: 695 KVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVM 871
+ ALAA+RHA+WF+ AS ++IR+ +DL R P + L W ++LL A+
Sbjct: 832 EKCLQALAALRHAKWFQARASGLQPCVIVIRVFRDLCQRVPTWGALPDWAMELLVEKALS 891
Query: 872 NNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNLECTRS 1012
+ T+ PL+ A RR L+ +A+G L G+ DPCE ++ S
Sbjct: 892 S--TKGPLSPGDAVRRVLECVASGTLLTDGPGLQDPCERDQMDALGS 936
>ref|XP_875807.3| PREDICTED: zinc finger RNA binding protein 2 [Bos taurus].
Length = 999
Score = 76.3 bits (186), Expect = 4e-14
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTML 583
++ V +VG KG + G L+++ PT AL +V E L Q P +
Sbjct: 712 LKGVMRVGLLAKGLLLRGDRAVQLILLCSQKPT----RALQRRVAEQLPLQLP------V 761
Query: 584 TNETGFEISSS-----------DATVKILITTVPPNLRK------------LDPELHLDI 694
+ +E+SS + +++ ++ P +R+ DP L
Sbjct: 762 VTDDKYEVSSDPDASIVISSCEEPRIQVAVSITSPLMREDPSADQGTEVPLPDPGDVLSP 821
Query: 695 KVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVM 871
+ ALAA+RHA+WF+ AS ++IR+ +DL R P + L W ++LL A+
Sbjct: 822 EKCLQALAALRHAKWFQARASGLQPCVIVIRVFRDLCQRVPTWGALPDWAMELLVEKALS 881
Query: 872 NNPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNLECTRS 1012
+ T+ PL+ A RR L+ +A+G L G+ DPCE ++ S
Sbjct: 882 S--TKGPLSPGDAVRRVLECVASGTLLTDGPGLQDPCERDQMDALGS 926
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,781,884
Number of extensions: 1128704
Number of successful extensions: 4319
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4297
Number of HSP's successfully gapped: 8
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013134
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013134
(1051 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537263.1| PREDICTED: similar to interleukin enhancer bind... 528 e-153
Alignment gi|XP_866023.1| PREDICTED: similar to interleukin enhancer bind... 521 e-151
Alignment gi|XP_868138.1| PREDICTED: similar to interleukin enhancer bind... 86 6e-17
Alignment gi|XP_868135.1| PREDICTED: similar to interleukin enhancer bind... 86 6e-17
Alignment gi|XP_542066.2| PREDICTED: similar to interleukin enhancer bind... 84 2e-16
Alignment gi|XP_854061.1| PREDICTED: similar to interleukin enhancer bind... 84 2e-16
Alignment gi|XP_868155.1| PREDICTED: similar to interleukin enhancer bind... 84 2e-16
Alignment gi|XP_868151.1| PREDICTED: similar to interleukin enhancer bind... 84 2e-16
Alignment gi|XP_868145.1| PREDICTED: similar to interleukin enhancer bind... 84 2e-16
Alignment gi|XP_868141.1| PREDICTED: similar to interleukin enhancer bind... 84 2e-16
>ref|XP_537263.1| PREDICTED: similar to interleukin enhancer binding factor 2 isoform
1 [Canis familiaris].
Length = 390
Score = 528 bits (1359), Expect(2) = e-153
Identities = 268/269 (99%), Positives = 269/269 (100%)
Frame = +2
Query: 188 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 367
VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID
Sbjct: 27 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 86
Query: 368 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 547
NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL
Sbjct: 87 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 146
Query: 548 RAQDPAEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 727
RAQDP+EVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR
Sbjct: 147 RAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 206
Query: 728 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV
Sbjct: 207 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 266
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCESGN 994
AYRRCLQILAAGLFLPGSVGITDPCESGN
Sbjct: 267 AYRRCLQILAAGLFLPGSVGITDPCESGN 295
Score = 35.0 bits (79), Expect(2) = e-153
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 997 RVHTFMTLEQQDMVC*TA 1050
RVHT MTLEQQDMVC TA
Sbjct: 297 RVHTVMTLEQQDMVCYTA 314
>ref|XP_866023.1| PREDICTED: similar to interleukin enhancer binding factor 2 isoform
2 [Canis familiaris].
Length = 395
Score = 521 bits (1342), Expect(2) = e-151
Identities = 268/275 (97%), Positives = 269/275 (97%), Gaps = 6/275 (2%)
Frame = +2
Query: 188 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 367
VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID
Sbjct: 27 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 86
Query: 368 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 547
NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL
Sbjct: 87 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 146
Query: 548 RAQDPAEV------LTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQS 709
RAQDP+EV LTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQS
Sbjct: 147 RAQDPSEVFYFLSVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQS 206
Query: 710 ALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQ 889
ALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQ
Sbjct: 207 ALAAIRHARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQ 266
Query: 890 PLALNVAYRRCLQILAAGLFLPGSVGITDPCESGN 994
PLALNVAYRRCLQILAAGLFLPGSVGITDPCESGN
Sbjct: 267 PLALNVAYRRCLQILAAGLFLPGSVGITDPCESGN 301
Score = 35.0 bits (79), Expect(2) = e-151
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 997 RVHTFMTLEQQDMVC*TA 1050
RVHT MTLEQQDMVC TA
Sbjct: 303 RVHTVMTLEQQDMVCYTA 320
>ref|XP_868138.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 8 [Canis familiaris].
Length = 900
Score = 85.9 bits (211), Expect = 6e-17
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q L E
Sbjct: 89 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LAQAVTE 139
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 140 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 199
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 200 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 257
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 258 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 294
>ref|XP_868135.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 7 [Canis familiaris].
Length = 888
Score = 85.9 bits (211), Expect = 6e-17
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q L E
Sbjct: 89 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LAQAVTE 139
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 140 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 199
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 200 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 257
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 258 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 294
>ref|XP_542066.2| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 1 [Canis familiaris].
Length = 900
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|XP_854061.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 2 [Canis familiaris].
Length = 896
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|XP_868155.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 12 [Canis familiaris].
Length = 896
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|XP_868151.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 11 [Canis familiaris].
Length = 876
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 72 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 121
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 122 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 181
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 182 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 239
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 240 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 276
>ref|XP_868145.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 10 [Canis familiaris].
Length = 845
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|XP_868141.1| PREDICTED: similar to interleukin enhancer binding factor 3 isoform
a isoform 9 [Canis familiaris].
Length = 874
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 70 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 119
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 120 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 179
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 180 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 237
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 238 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 274
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,570,252
Number of extensions: 1154324
Number of successful extensions: 4537
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 4485
Number of HSP's successfully gapped: 31
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013134
(1051 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929592.2| PREDICTED: interleukin enhancer-binding fact... 529 e-154
Alignment gi|XP_003123290.2| PREDICTED: interleukin enhancer-binding fact... 84 1e-16
Alignment gi|XP_003361748.1| PREDICTED: zinc finger RNA-binding protein [... 77 1e-14
Alignment gi|XP_003122205.2| PREDICTED: spermatid perinuclear RNA-binding... 77 1e-14
Alignment gi|XP_003359791.1| PREDICTED: zinc finger RNA-binding protein-l... 51 1e-06
>ref|XP_001929592.2| PREDICTED: interleukin enhancer-binding factor 2 [Sus scrofa].
Length = 390
Score = 529 bits (1362), Expect(2) = e-154
Identities = 269/269 (100%), Positives = 269/269 (100%)
Frame = +2
Query: 188 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 367
VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID
Sbjct: 27 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 86
Query: 368 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 547
NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL
Sbjct: 87 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 146
Query: 548 RAQDPAEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 727
RAQDPAEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR
Sbjct: 147 RAQDPAEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 206
Query: 728 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV
Sbjct: 207 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 266
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCESGN 994
AYRRCLQILAAGLFLPGSVGITDPCESGN
Sbjct: 267 AYRRCLQILAAGLFLPGSVGITDPCESGN 295
Score = 35.0 bits (79), Expect(2) = e-154
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 997 RVHTFMTLEQQDMVC*TA 1050
RVHT MTLEQQDMVC TA
Sbjct: 297 RVHTVMTLEQQDMVCYTA 314
>ref|XP_003123290.2| PREDICTED: interleukin enhancer-binding factor 3 [Sus scrofa].
Length = 703
Score = 84.0 bits (206), Expect = 1e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|XP_003361748.1| PREDICTED: zinc finger RNA-binding protein [Sus scrofa].
Length = 1032
Score = 77.4 bits (189), Expect = 1e-14
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEV-LTM 580
++ V +VG KG + G +LV++ P+ ++ + + + L P + +
Sbjct: 797 LKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAETLPKQLAVISPEKYDIKC 856
Query: 581 LTNETGFEISSS-DATVKILITTVPPNLRK-------------LDPELHLDIKVLQSALA 718
+E ++S + +++ IT P +R+ DP LD + ALA
Sbjct: 857 AVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALA 916
Query: 719 AIRHARWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQP 892
A+RHA+WF+ A+ QS V ++IR+L+DL R P + W ++LL A+ + P
Sbjct: 917 ALRHAKWFQARANGLQSCV-IIIRILRDLCQRVPTWSDFPSWAMELLVEKAISS--ASSP 973
Query: 893 LALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+ A RR + +++G+ L GS G+ DPCE
Sbjct: 974 QSPGDALRRVFECISSGIILKGSPGLLDPCE 1004
>ref|XP_003122205.2| PREDICTED: spermatid perinuclear RNA-binding protein-like [Sus
scrofa].
Length = 585
Score = 77.4 bits (189), Expect = 1e-14
Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 16/207 (7%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAAL-GNKVVESLRAQDPAEVLTMLTN 589
V ++G KG + +LV++ K PT + + N ++ + + + +
Sbjct: 85 VMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCVD 144
Query: 590 ETGFEISSSDA---TVKILITT--VPPNLRKLD---------PELHLDIKVLQSALAAIR 727
E I ++ T+K+++T+ + L K D P+L LD + +ALA++R
Sbjct: 145 EASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGEKVAMKDPPDL-LDRQKCLNALASLR 203
Query: 728 HARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALN 904
HA+WF+ A+ + +++R+L+DL R P + PL W L+L+ ++ +PL
Sbjct: 204 HAKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAG 261
Query: 905 VAYRRCLQILAAGLFLPGSVGITDPCE 985
A RR ++ LA+G+ LPG G+ DPCE
Sbjct: 262 EALRRVMECLASGILLPGGPGLHDPCE 288
>ref|XP_003359791.1| PREDICTED: zinc finger RNA-binding protein-like, partial [Sus
scrofa].
Length = 774
Score = 50.8 bits (120), Expect = 1e-06
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEV-LTM 580
++ V +VG KG + G +LV++ P+ ++ + + + L P + +
Sbjct: 614 LKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAETLPKQLAVISPEKYDIKC 673
Query: 581 LTNETGFEISSS-DATVKILITTVPPNLRK-------------LDPELHLDIKVLQSALA 718
+E ++S + +++ IT P +R+ DP LD + ALA
Sbjct: 674 AVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALA 733
Query: 719 AIRHARWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPW 838
A+RHA+WF+ A+ QS V ++IR+L+DL R P + W
Sbjct: 734 ALRHAKWFQARANGLQSCV-IIIRILRDLCQRVPTWSDFPSW 774
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,880,570
Number of extensions: 722127
Number of successful extensions: 2940
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2928
Number of HSP's successfully gapped: 6
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013134
(1051 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080650.1| interleukin enhancer-binding factor 2 [Mus musc... 528 e-153
Alignment gi|NP_001036174.1| interleukin enhancer-binding factor 3 isofor... 86 6e-17
Alignment gi|NP_001036173.1| interleukin enhancer-binding factor 3 isofor... 86 6e-17
Alignment gi|NP_001036172.1| interleukin enhancer-binding factor 3 isofor... 86 6e-17
Alignment gi|NP_034691.2| interleukin enhancer-binding factor 3 isoform 1... 86 6e-17
Alignment gi|NP_033287.2| spermatid perinuclear RNA-binding protein [Mus ... 79 5e-15
Alignment gi|NP_035897.2| zinc finger RNA-binding protein [Mus musculus]. 78 1e-14
Alignment gi|NP_001030067.2| zinc finger RNA binding protein 2 [Mus muscu... 74 2e-13
>ref|NP_080650.1| interleukin enhancer-binding factor 2 [Mus musculus].
Length = 390
Score = 528 bits (1359), Expect(2) = e-153
Identities = 268/269 (99%), Positives = 269/269 (100%)
Frame = +2
Query: 188 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 367
VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID
Sbjct: 27 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 86
Query: 368 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 547
NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL
Sbjct: 87 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 146
Query: 548 RAQDPAEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 727
RAQDP+EVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR
Sbjct: 147 RAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 206
Query: 728 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV
Sbjct: 207 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 266
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCESGN 994
AYRRCLQILAAGLFLPGSVGITDPCESGN
Sbjct: 267 AYRRCLQILAAGLFLPGSVGITDPCESGN 295
Score = 35.0 bits (79), Expect(2) = e-153
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 997 RVHTFMTLEQQDMVC*TA 1050
RVHT MTLEQQDMVC TA
Sbjct: 297 RVHTVMTLEQQDMVCYTA 314
>ref|NP_001036174.1| interleukin enhancer-binding factor 3 isoform 4 [Mus musculus].
Length = 703
Score = 85.5 bits (210), Expect = 6e-17
Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q LT +T E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LTTVT-E 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|NP_001036173.1| interleukin enhancer-binding factor 3 isoform 3 [Mus musculus].
Length = 716
Score = 85.5 bits (210), Expect = 6e-17
Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q LT +T E
Sbjct: 105 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LTTVT-E 154
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 155 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 214
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 215 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 272
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 273 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 309
>ref|NP_001036172.1| interleukin enhancer-binding factor 3 isoform 2 [Mus musculus].
Length = 898
Score = 85.5 bits (210), Expect = 6e-17
Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q LT +T E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LTTVT-E 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|NP_034691.2| interleukin enhancer-binding factor 3 isoform 1 [Mus musculus].
Length = 911
Score = 85.5 bits (210), Expect = 6e-17
Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q LT +T E
Sbjct: 105 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LTTVT-E 154
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 155 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 214
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 215 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 272
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 273 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 309
>ref|NP_033287.2| spermatid perinuclear RNA-binding protein [Mus musculus].
Length = 672
Score = 79.3 bits (194), Expect = 5e-15
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAAL-GNKVVESLRAQDPAEVLTMLTN 589
V ++G KG + +LV++ K PT + + N ++ + + + N
Sbjct: 85 VMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCIN 144
Query: 590 ETGFEISSSDA---TVKILITTV----------PPNLRKLDPELHLDIKVLQSALAAIRH 730
E I ++ T+K+++T+ N+ DP LD + +ALA++RH
Sbjct: 145 EASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDRQKCLNALASLRH 204
Query: 731 ARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
A+WF+ A+ + +++R+L+DL R P + PL W L+L+ ++ +PL
Sbjct: 205 AKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGE 262
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCE 985
A RR ++ LA+G+ LPG G+ DPCE
Sbjct: 263 ALRRVMECLASGILLPGGPGLHDPCE 288
>ref|NP_035897.2| zinc finger RNA-binding protein [Mus musculus].
Length = 1074
Score = 78.2 bits (191), Expect = 1e-14
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEV-LTM 580
++ V +VG KG + G +LV++ P+ ++ + + + L P + +
Sbjct: 785 LKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPEKYDIKC 844
Query: 581 LTNETGFEISSS-DATVKILITTVPPNLRK-------------LDPELHLDIKVLQSALA 718
+E ++S + +++ IT P +R+ DP LD + ALA
Sbjct: 845 AVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALA 904
Query: 719 AIRHARWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQP 892
A+RHA+WF+ A+ QS V ++IR+L+DL R P + W ++LL A+ + P
Sbjct: 905 ALRHAKWFQARANGLQSCV-IIIRILRDLCQRVPTWSDFPSWAMELLVEKAISS--ASSP 961
Query: 893 LALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+ A RR + +++G+ L GS G+ DPCE
Sbjct: 962 QSPGDALRRVFECISSGIILKGSPGLLDPCE 992
>ref|NP_001030067.2| zinc finger RNA binding protein 2 [Mus musculus].
Length = 874
Score = 73.9 bits (180), Expect = 2e-13
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLR--AQDPAEVLT 577
++ V +VG KG + G + L ++ PT + + ++ L A+D EV +
Sbjct: 586 LKGVVRVGILAKGLVLRGDHSVQLTLLCSKKPTHSLLQRIKQELPRELSIVAEDKYEVSS 645
Query: 578 MLTNETGFEISSS-DATVKILITTVPPNLRK------------LDPELHLDIKVLQSALA 718
++ IS+ + VK+ ++ P +R+ DPE LD + LA
Sbjct: 646 --DHDANIVISACVEPGVKVTVSATSPLMREDPSVKQGQQDALSDPEDVLDRERCLETLA 703
Query: 719 AIRHARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPL 895
A+RHA+WF+ AS ++IR+L++L P + L W ++LL + + P +PL
Sbjct: 704 ALRHAKWFQARASGLQPCVIVIRVLRELCRCLPPWGALPAWAMELLVEKVLSSAP--RPL 761
Query: 896 ALNVAYRRCLQILAAGLFLPGSVGITDPCESG 991
+ A RR L+ +A G L G+ DPCE G
Sbjct: 762 SPGDAMRRVLEYVATGALLTDGPGLQDPCEKG 793
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,488,908
Number of extensions: 973797
Number of successful extensions: 3541
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3520
Number of HSP's successfully gapped: 9
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013134
(1051 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004506.2| interleukin enhancer-binding factor 2 [Homo sap... 528 e-153
Alignment gi|NP_001131145.1| interleukin enhancer-binding factor 3 isofor... 84 2e-16
Alignment gi|NP_060090.2| interleukin enhancer-binding factor 3 isoform d... 84 2e-16
Alignment gi|NP_703194.1| interleukin enhancer-binding factor 3 isoform c... 84 2e-16
Alignment gi|NP_004507.2| interleukin enhancer-binding factor 3 isoform b... 84 2e-16
Alignment gi|NP_036350.2| interleukin enhancer-binding factor 3 isoform a... 84 2e-16
Alignment gi|NP_001164608.1| spermatid perinuclear RNA-binding protein is... 80 4e-15
Alignment gi|NP_060857.2| spermatid perinuclear RNA-binding protein isofo... 80 4e-15
Alignment gi|NP_057191.2| zinc finger RNA-binding protein [Homo sapiens]. 78 2e-14
Alignment gi|NP_055989.1| zinc finger RNA-binding protein 2 isoform 1 [Ho... 73 4e-13
>ref|NP_004506.2| interleukin enhancer-binding factor 2 [Homo sapiens].
Length = 390
Score = 528 bits (1359), Expect(2) = e-153
Identities = 268/269 (99%), Positives = 269/269 (100%)
Frame = +2
Query: 188 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 367
VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID
Sbjct: 27 VPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVID 86
Query: 368 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 547
NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL
Sbjct: 87 NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESL 146
Query: 548 RAQDPAEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 727
RAQDP+EVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR
Sbjct: 147 RAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIR 206
Query: 728 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV
Sbjct: 207 HARWFEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 266
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCESGN 994
AYRRCLQILAAGLFLPGSVGITDPCESGN
Sbjct: 267 AYRRCLQILAAGLFLPGSVGITDPCESGN 295
Score = 35.0 bits (79), Expect(2) = e-153
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +1
Query: 997 RVHTFMTLEQQDMVC*TA 1050
RVHT MTLEQQDMVC TA
Sbjct: 297 RVHTVMTLEQQDMVCYTA 314
>ref|NP_001131145.1| interleukin enhancer-binding factor 3 isoform e [Homo sapiens].
Length = 706
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|NP_060090.2| interleukin enhancer-binding factor 3 isoform d [Homo sapiens].
Length = 898
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|NP_703194.1| interleukin enhancer-binding factor 3 isoform c [Homo sapiens].
Length = 690
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|NP_004507.2| interleukin enhancer-binding factor 3 isoform b [Homo sapiens].
Length = 702
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|NP_036350.2| interleukin enhancer-binding factor 3 isoform a [Homo sapiens].
Length = 894
Score = 84.0 bits (206), Expect = 2e-16
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 26/217 (11%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTMLTNE 592
V +VG KG + G +LV++ K PT AL +KV ++L Q A E
Sbjct: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQLAA------VTE 141
Query: 593 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 697
+EI S DA + I T PP L DP LD +
Sbjct: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
Query: 698 VLQSALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 874
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
Query: 875 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+P+ A RR L+ LA+G+ +P GI DPCE
Sbjct: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCE 296
>ref|NP_001164608.1| spermatid perinuclear RNA-binding protein isoform 2 [Homo sapiens].
Length = 658
Score = 79.7 bits (195), Expect = 4e-15
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAAL-GNKVVESLRAQDPAEVLTMLTN 589
V ++G KG + +LV++ K PT + + N ++ + + + N
Sbjct: 71 VMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCVN 130
Query: 590 ETGFEISSSDA---TVKILITTV----------PPNLRKLDPELHLDIKVLQSALAAIRH 730
E I ++ T+K+++T+ N+ DP LD + +ALA++RH
Sbjct: 131 EASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVSMKDPPDLLDRQKCLNALASLRH 190
Query: 731 ARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
A+WF+ A+ + +++R+L+DL R P + PL W L+L+ ++ +PL
Sbjct: 191 AKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGE 248
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCE 985
A RR ++ LA+G+ LPG G+ DPCE
Sbjct: 249 ALRRVMECLASGILLPGGPGLHDPCE 274
>ref|NP_060857.2| spermatid perinuclear RNA-binding protein isoform 1 [Homo sapiens].
Length = 672
Score = 79.7 bits (195), Expect = 4e-15
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Frame = +2
Query: 413 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAAL-GNKVVESLRAQDPAEVLTMLTN 589
V ++G KG + +LV++ K PT + + N ++ + + + N
Sbjct: 85 VMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCVN 144
Query: 590 ETGFEISSSDA---TVKILITTV----------PPNLRKLDPELHLDIKVLQSALAAIRH 730
E I ++ T+K+++T+ N+ DP LD + +ALA++RH
Sbjct: 145 EASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVSMKDPPDLLDRQKCLNALASLRH 204
Query: 731 ARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNV 907
A+WF+ A+ + +++R+L+DL R P + PL W L+L+ ++ +PL
Sbjct: 205 AKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSI--GTCNRPLGAGE 262
Query: 908 AYRRCLQILAAGLFLPGSVGITDPCE 985
A RR ++ LA+G+ LPG G+ DPCE
Sbjct: 263 ALRRVMECLASGILLPGGPGLHDPCE 288
>ref|NP_057191.2| zinc finger RNA-binding protein [Homo sapiens].
Length = 1074
Score = 77.8 bits (190), Expect = 2e-14
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 17/211 (8%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEV-LTM 580
++ V +VG KG + G +LV++ P+ ++ + + + L P + +
Sbjct: 785 LKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPEKYDIKC 844
Query: 581 LTNETGFEISSS-DATVKILITTVPPNLRK-------------LDPELHLDIKVLQSALA 718
+E ++S + +++ IT P +R+ DP LD + ALA
Sbjct: 845 AVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALA 904
Query: 719 AIRHARWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQP 892
A+RHA+WF+ A+ QS V ++IR+L+DL R P + W ++LL A+ + P
Sbjct: 905 ALRHAKWFQARANGLQSCV-IIIRILRDLCQRVPTWSDFPSWAMELLVEKAISS--ASSP 961
Query: 893 LALNVAYRRCLQILAAGLFLPGSVGITDPCE 985
+ A RR + +++G+ L GS G+ DPCE
Sbjct: 962 QSPGDALRRVFECISSGIILKGSPGLLDPCE 992
>ref|NP_055989.1| zinc finger RNA-binding protein 2 isoform 1 [Homo sapiens].
Length = 939
Score = 73.2 bits (178), Expect = 4e-13
Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Frame = +2
Query: 404 IEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPAEVLTML 583
++ V +VG KG + G L ++ PT + + ++ L+ E
Sbjct: 653 LKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRIAQQLPRQLQMVTEDEYEVSS 712
Query: 584 TNETGFEISS-SDATVKILITTVPPNLRK---LDPELH---------LDIKVLQSALAAI 724
E ISS + +++ I+ P +R+ DP + L K +LAA+
Sbjct: 713 DPEANIVISSCEEPRMQVTISVTSPLMREDPSTDPGVEEPQADAGDVLSPKKCLESLAAL 772
Query: 725 RHARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLAL 901
RHARWF+ AS ++IR+L+DL R P + L W ++LL AV + PL
Sbjct: 773 RHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPAWAMELLVEKAVSS--AAGPLGP 830
Query: 902 NVAYRRCLQILAAGLFLPGSVGITDPCE 985
A RR L+ +A G L G+ DPCE
Sbjct: 831 GDAVRRVLECVATGTLLTDGPGLQDPCE 858
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,933,018
Number of extensions: 1152188
Number of successful extensions: 4354
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4332
Number of HSP's successfully gapped: 11
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013134
(1051 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 236 2e-59
>Sscrofa_Chr04
|| Length = 143465943
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 568 agttttgaccatgctgaccaatgaaactggctttgagatcagttcttctgatgctacagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104877423 agttttgaccatgctgaccaatgaaactggctttgagatcagttcttctgatgctacagt 104877482
Query: 628 gaagattctcattacaacagtgccgcccaatctccgaaaactggacccagaactccact 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104877483 gaagattctcattacaacagtgccgcccaatctccgaaaactggacccagaactccact 104877541
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 217 gtgtgaaatggcctttcctcgggtcaagccagcacctgatgaaacttccttcagtgaggc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104875627 gtgtgaaatggcctttcctcgggtcaagccagcacctgatgaaacttccttcagtgaggc 104875686
Query: 277 cttactgaagaggaatcaggacctggctcctaattcagctgagcagg 323
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104875687 cttactgaagaggaatcaggacctggctcctaattcagctgagcagg 104875733
Score = 204 bits (103), Expect = 7e-50
Identities = 116/119 (97%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 913 cagacgatgcttgcagattctggctgcaggactgttcctgccagggtcagtgggtatcac 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104879440 cagacgatgcttgcagattctggctgcaggactgttcctgccagggtcagtgggtatcac 104879499
Query: 973 tgacccctgtgagagtggcaactt-agagtgcacacgttcatgactctggaacagcagg 1030
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 104879500 tgacccctgtgagagtggcaacttcagagtgcacacagtcatgactctggaacagcagg 104879558
Score = 198 bits (100), Expect = 4e-48
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 400 gcaaatcgaagaagttcgacaagttggatcatataaaaagggaacgatgactacaggaca 459
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104876298 gcaaatcgaagaagtccgacaagttggatcatataaaaagggaacgatgactacaggaca 104876357
Query: 460 caatgtggctgacctggtggtaatcctaaagattttgccaacac 503
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104876358 caatgtggctgacctggtggtaatcctaaagattttgccaacac 104876401
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 21 atacgccggcaagccgcctctccagttgagggcttctcggaggaaaggggcggttggtgt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104874074 atacgccggcaagccgcctctccagttgagggcttctcggaggaaaggggcggttggtgt 104874133
Query: 81 ggcctccattgttcggactttgggacgccatgagg 115
|||||||||||||||||||||||||||||||||||
Sbjct: 104874134 ggcctccattgttcggactttgggacgccatgagg 104874168
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 766 agttaaagttctcattagactgctgaaggacctgaggattcgttttcctggttttgagcc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104878601 agttaaagttctcattagactgctgaaggacctgaggattcgttttcctggttttgagcc 104878660
Query: 826 cctcacaccttggatccttgacctgcttg 854
|||||||||||||||||||||||||||||
Sbjct: 104878661 cctcacaccttggatccttgacctgcttg 104878689
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 320 caggcctctatcctttctttggtgacaaaaataaataatgtgattgacaacttgatcgtg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104876115 caggcctctatcctttctttggtgacaaaaataaataatgtgattgacaacttgatcgtg 104876174
Query: 380 gctccagggacatttgaagtg 400
|||||||||||||||||||||
Sbjct: 104876175 gctccagggacatttgaagtg 104876195
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 687 tggacatcaaggtgttgcagagtgccttagcagccatccgacacgcccgctggtttgagg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104877996 tggacatcaaggtgttgcagagtgccttagcagccatccgacacgcccgctggtttgagg 104878055
Query: 747 agaacgcttctcagtccac 765
|||||||||||||||||||
Sbjct: 104878056 agaacgcttctcagtccac 104878074
Score = 135 bits (68), Expect = 5e-29
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 504 tggaagccgttgctgctcttgggaacaaagtcgtggagagcttgagagcacaggatcctg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104876952 tggaagccgttgctgctcttgggaacaaagtcgtggagagcttgagagcacaggatcctg 104877011
Query: 564 ctgaagttttga 575
|||||| |||||
Sbjct: 104877012 ctgaaggtttga 104877023
Score = 127 bits (64), Expect = 1e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 113 aggggggacagaggccgtggtcgtggcgggcgctttggttccagaggaggcccaggagga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104874866 aggggggacagaggccgtggtcgtggcgggcgctttggttccagaggaggcccaggagga 104874925
Query: 173 gggt 176
||||
Sbjct: 104874926 gggt 104874929
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 854 gggcactatgctgtgatgaacaaccccacgagacagcctttggccctgaatgtggcgtac 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104879305 gggcactatgctgtgatgaacaaccccacgagacagcctttggccctgaatgtggcgtac 104879364
Query: 914 ag 915
||
Sbjct: 104879365 ag 104879366
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 174 ggttcaggccgtttgtgccacatatcccatttgatttctatttg 217
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104875143 ggttcaggccgtttgtgccacatatcccatttgatttctatttg 104875186
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,446,162
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 12
Length of query: 1051
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1030
Effective length of database: 2,808,413,156
Effective search space: 2892665550680
Effective search space used: 2892665550680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)